Citrus Sinensis ID: 048343

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MAISPKMNHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSWN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccEEEcHHHHHHHHHcccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEccccHHHHHHHccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccEEEcccccEEccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEccHHHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccHHHHHHcccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MAISPKMNHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFltstktprpysILIFFdahqlhnkpelhLQELRNEFSLVASSFiannvdnpssrgklFFCYLEFKESQSSFALFAvnslphirlvgpdakslkddsvqMEQGDFARMAESMADFVQSRtkltvgpihhppllskkqiGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMpmfladrndpnklvffyqgsgmqlgaEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIyldnwktgygvhgfwpsswn
Flexible Loop (DISEMBL)
MAISPKMNHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIannvdnpssRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIhhppllskkqiGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSWN
Low Complexity Region (SEG)
MAISPKMNHlilyfaaiiillVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGlivvviliWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSWN
Disordered region (IsUnstruct)
*******NHLILYFAAIIILLVSLST*******V*ELLNL****EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVG***************************FVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWP****
Disordered Region (DISOPRED)
****PKMNHLILYFAAIIILLVSLSTS*******************GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD*PSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGP******************RMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPS***
Disordered Region (DISEMBL)
MAISPKMNHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSWN
Disordered Region (DISPRO)
**ISPKMNHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSW*
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAISPKMNHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSWN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9SYB5	346	Probable dolichyl-diphosp	yes	no	0.902	0.904	0.673	1e-129
Q94I55	336	Probable dolichyl-diphosp	yes	no	0.893	0.922	0.607	1e-111
F4I8X8	343	Probable dolichyl-diphosp	no	no	0.953	0.965	0.579	1e-103
Q63ZR0	329	Magnesium transporter pro	N/A	no	0.642	0.677	0.262	2e-12
Q9CQY5	335	Magnesium transporter pro	yes	no	0.847	0.877	0.243	5e-12
P34669	340	Probable dolichyl-diphosp	yes	no	0.766	0.782	0.239	8e-10
Q5ZJ06	328	Magnesium transporter pro	no	no	0.642	0.679	0.245	8e-10
O35777	335	Magnesium transporter pro	yes	no	0.850	0.880	0.238	1e-09
Q7ZV50	328	Magnesium transporter pro	no	no	0.818	0.865	0.234	6e-09
Q9H0U3	335	Magnesium transporter pro	yes	no	0.636	0.659	0.239	6e-09

>sp|Q9SYB5|OST3B_ARATH Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B OS=Arabidopsis thaliana GN=OST3B PE=2 SV=1

 Score =  462 bits (1190), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 212/315 (67%), Positives = 266/315 (84%), Gaps = 2/315 (0%)

Query: 33  LVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELR 92
           L++EL++L+S SE+GVIHL+D  +S+FLTS  TPRPYS+L+FFDA QLH+K EL LQELR
Sbjct: 34  LLNELVSLRSTSESGVIHLDDHGISKFLTSASTPRPYSLLVFFDATQLHSKNELRLQELR 93

Query: 93  NEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLK 152
            EF +V++SF+ANN  N S   KLFFC +EF +SQSSF LF VN+LPHIRLV P   +L+
Sbjct: 94  REFGIVSASFLANN--NGSEGTKLFFCEIEFSKSQSSFQLFGVNALPHIRLVSPSISNLR 151

Query: 153 DDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAK 212
           D+S QM+Q D++R+AESMA+FV+ RTKL VGPI  PPLLSK QIG+IV +I+I  PF+ K
Sbjct: 152 DESGQMDQSDYSRLAESMAEFVEQRTKLKVGPIQRPPLLSKPQIGIIVALIVIATPFIIK 211

Query: 213 KIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM 272
           ++  GET+LHD ++WL G++F+YFFSV+G MHNIIRKMPMFL DRNDPNKLVFFYQGSGM
Sbjct: 212 RVLKGETILHDTRLWLSGAIFIYFFSVAGTMHNIIRKMPMFLQDRNDPNKLVFFYQGSGM 271

Query: 273 QLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNW 332
           QLGAEGFAVGFLYT+VGLLLA +T+ LVRVK+++ QR +M+++L ISFWAV KV+YLDNW
Sbjct: 272 QLGAEGFAVGFLYTVVGLLLAFVTNVLVRVKNITAQRLIMLLALFISFWAVKKVVYLDNW 331

Query: 333 KTGYGVHGFWPSSWN 347
           KTGYG+H +WPSSW 
Sbjct: 332 KTGYGIHPYWPSSWR 346

May be involved in N-glycosylation through its association with N-oligosaccharyl transferase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94I55|OST3_ORYSJ Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 OS=Oryza sativa subsp. japonica GN=OST3 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/316 (60%), Positives = 251/316 (79%), Gaps = 6/316 (1%)

Query: 32  DLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQEL 91
           DLV+EL +L+S+S +GVIHL D  ++RFL S   PRPYS+L+FFDA  LH+K +LHL +L
Sbjct: 27  DLVAELQSLRSRSPSGVIHLTDTSITRFL-SAPAPRPYSVLVFFDAASLHSKTDLHLPQL 85

Query: 92  RNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL 151
           R EF+L+++SF+A+N   P+S   LFF  +EF ESQ SFA F VNSLPH+RLV P+   L
Sbjct: 86  RREFALLSASFLAHN---PAS-ADLFFADIEFSESQHSFAQFGVNSLPHVRLVRPEHTRL 141

Query: 152 KDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMA 211
              S QM+Q  F+R+A+SMA+FV+SRT L VGPI  PPL+S+ Q+ L+V++ L+ IPF+ 
Sbjct: 142 AG-SEQMDQSHFSRLADSMAEFVESRTGLEVGPIVRPPLVSRNQMILLVILFLVSIPFLI 200

Query: 212 KKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSG 271
           K+I  GETL HDR++W+ G++F+YFFSVSG M+ IIR  PMF+ DR+DPNKLVFFYQGSG
Sbjct: 201 KRIMDGETLFHDRRVWMAGALFIYFFSVSGGMYGIIRHTPMFITDRSDPNKLVFFYQGSG 260

Query: 272 MQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDN 331
           MQLGAEGFAVGFLYT+VGL++A++TH LVRV+S+ IQR+ M+  ++I +WAV KVI LDN
Sbjct: 261 MQLGAEGFAVGFLYTLVGLMIAMVTHLLVRVESLQIQRFTMLAVMIIGWWAVKKVILLDN 320

Query: 332 WKTGYGVHGFWPSSWN 347
           WKTGY +H FWPSSW 
Sbjct: 321 WKTGYSIHTFWPSSWR 336

May be involved in N-glycosylation through its association with N-oligosaccharyl transferase.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|F4I8X8|OST3A_ARATH Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3A OS=Arabidopsis thaliana GN=OST3A PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/333 (57%), Positives = 251/333 (75%), Gaps = 2/333 (0%)

Query: 14  FAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILI 73
           F  +I+ L +L+   S+SDL +EL++L+S +E+GVI  N+  VS+F+TS  TPRPYS++I
Sbjct: 11  FFILIVFLFTLANPKSDSDLKNELVSLRSTAESGVISFNNDDVSKFITSVSTPRPYSLII 70

Query: 74  FFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF 133
           FFDA  LH   +L L E R EF LV+++FI NN +N S+  KLFFC +E   S++SF  F
Sbjct: 71  FFDAVHLHGNSQLRLPEFRREFRLVSATFITNN-NNESNGTKLFFCEIESTHSEASFRRF 129

Query: 134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSK 193
           AV SLPHI LV P  ++L + S QM+ GDF  +AESMA+FV+ +TKLTV  I  PPL+SK
Sbjct: 130 AVESLPHISLVSPTTENLTE-SDQMDGGDFTGLAESMAEFVERQTKLTVCSIQRPPLISK 188

Query: 194 KQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMF 253
            QIG+IV +I+I  P + KKI  GETLLHD +IWL+G+VFVYFFSVSG MHNIIR+MPM+
Sbjct: 189 TQIGIIVAIIIISTPILIKKILKGETLLHDHRIWLVGAVFVYFFSVSGTMHNIIREMPMY 248

Query: 254 LADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMI 313
           + D  D +K VFF + S MQLGAEGF VGFLYT+VGLLLA +T+ +VRVK +  QR  M+
Sbjct: 249 IKDYEDSSKFVFFIEESEMQLGAEGFFVGFLYTVVGLLLAFVTNVVVRVKKLDEQRMAML 308

Query: 314 VSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSW 346
           ++L ISFWAV KV+YLDNWKTGY ++ +WPSSW
Sbjct: 309 LALSISFWAVRKVVYLDNWKTGYEIYPYWPSSW 341

May be involved in N-glycosylation through its association with N-oligosaccharyl transferase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q63ZR0|MAGT1_XENLA Magnesium transporter protein 1 OS=Xenopus laevis GN=magt1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 17/240 (7%)

Query: 31  SDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQE 90
           SD V +L++  S+    VI +N     RF+ S   PR YS+++ F A Q H +  +  ++
Sbjct: 32  SDKVGQLMDWASKRP--VIRMNGDKFRRFIKSP--PRNYSVVVMFTALQAHRQCVV-CKQ 86

Query: 91  LRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKS 150
              E+ ++A+S+  ++    +   ++FF  ++F E    F +  +NS P      P  K 
Sbjct: 87  ADEEYQILANSWRYSS----AFTNRIFFAVVDFDEGSDVFQMLNMNSAPTFINFPPKGKP 142

Query: 151 LKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFM 210
            K D+ +++   FA  AE +A +V  RT + +  I  P       +GL++ VI   +   
Sbjct: 143 KKGDTYELQVRGFA--AEQLARWVADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLR 200

Query: 211 AKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGS 270
              +      L+++  W L ++       SG M N IR  P   A +N     V +  GS
Sbjct: 201 RSNL----DFLNNKTGWALAALCFVLAMTSGQMWNHIRGPP--YAHKNPHTNQVNYIHGS 254

Xenopus laevis (taxid: 8355)

>sp|Q9CQY5|MAGT1_MOUSE Magnesium transporter protein 1 OS=Mus musculus GN=Magt1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 30/324 (9%)

Query: 4   SPKMNHLILYFAAIIILLVSLSTSDSN--------SDLVSELLNLQSQSEAGVIHLNDQL 55
           SP+    +   AA+ +LLVS   S S         S+ VS+L+   ++    VI +N   
Sbjct: 3   SPRWFWSVCAIAAVALLLVSKVPSASAQRKKEMVLSEKVSQLMEWANKRP--VIRMNGDK 60

Query: 56  VSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGK 115
             R + +   PR YS+++ F A QLH +  +  ++   EF ++A+S+  +N    +   +
Sbjct: 61  FRRLVKAP--PRNYSVVVMFTALQLHRQCVV-CKQADEEFQILANSWRYSN----AFTNR 113

Query: 116 LFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ 175
           +FF  ++F E    F +  +NS P      P  K  + D+ +++   F+  AE +A ++ 
Sbjct: 114 IFFAMVDFDEGSDVFQMLNMNSAPTFINFPPKGKPKRADTYELQVRGFS--AEQIARWIA 171

Query: 176 SRTKLTVGPIHHPPLLSKKQIGLIVVVI--LIWIPFMAKKIFAGETLLHDRKIWLLGSVF 233
            RT + +  I  P       +GL++ VI  L+++        +    L ++  W   ++ 
Sbjct: 172 DRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLR------RSNMEFLFNKTGWAFAALC 225

Query: 234 VYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM-QLGAEGFAVGFLYTIVGLLL 292
                 SG M N IR  P   A +N     V +  GS   Q  AE   V      V L +
Sbjct: 226 FVLAMTSGQMWNHIRGPP--YAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNGGVTLGM 283

Query: 293 ALMTHGLVRVKSVSIQRWVMIVSL 316
            L+         +  +R + I  +
Sbjct: 284 VLLCEAATSDMDIGKRRMMCIAGI 307

May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. May be involved in Mg(2+) transport in epithelial cells.

Mus musculus (taxid: 10090)

>sp|P34669|OST3_CAEEL Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 OS=Caenorhabditis elegans GN=ZK686.3 PE=3 SV=2

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 135/288 (46%), Gaps = 22/288 (7%)

Query: 7   MNHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTK-T 65
           M  ++L F  ++ +  S +   +  D V  L++L S+    ++  N   + ++ T  +  
Sbjct: 1   MRTMVLLFFMLLAVYES-AQQQTLEDKVQNLVDLTSRQS--IVKFN---MDKWKTLVRMQ 54

Query: 66  PRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE 125
           PR YS+++ F A     +  +  +   +EF +VA+S       +   R K+FF  +++++
Sbjct: 55  PRNYSMIVMFTALSPGVQCPI-CKPAYDEFMIVANS--HRYTSSEGDRRKVFFGIVDYED 111

Query: 126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARM---AESMADFVQSRTKLTV 182
           +   F    +N+ P +   GP   + K    + EQ DF R    A+++  FV  +T++ V
Sbjct: 112 APQIFQQMNLNTAPILYHFGPKLGAKK----RPEQMDFQRQGFDADAIGRFVADQTEVHV 167

Query: 183 GPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGA 242
             I  PP  +   +  + V +L+ + +M +        L +R +W    + + F  +SG 
Sbjct: 168 RVIR-PPNYTAPVVIALFVALLLGMLYMKRNSL---DFLFNRTVWGFVCLAITFIFMSGQ 223

Query: 243 MHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGL 290
           M N IR  P  + + N   +  F +  +  QL AE + VG LY ++ +
Sbjct: 224 MWNHIRGPPFMITNPNT-KEPSFIHGSTQFQLIAETYIVGLLYALIAI 270

Caenorhabditis elegans (taxid: 6239)

>sp|Q5ZJ06|MAGT1_CHICK Magnesium transporter protein 1 OS=Gallus gallus GN=MAGT1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 17/240 (7%)

Query: 31  SDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQE 90
           S+ VS+L+   S+    VI +N     R + +   PR YS+++ F A Q H +  +  ++
Sbjct: 31  SEKVSQLMEWTSKRS--VIRMNGDKFRRLVKAP--PRNYSVIVMFTALQPHRQCVV-CKQ 85

Query: 91  LRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKS 150
              E+ ++A+S+  ++    +   K+FF  ++F E    F +  +NS P         K 
Sbjct: 86  ADEEYQVLANSWRYSS----AFTNKIFFAMVDFDEGSDVFQMLNMNSAPTFINFPAKGKP 141

Query: 151 LKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFM 210
            + D+ +++   FA  AE +A +V  RT + +  I  P       +GL++ VI   +   
Sbjct: 142 KRGDTYELQVRGFA--AEQLARWVADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLR 199

Query: 211 AKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGS 270
              +      L+++  W   ++       SG M N IR  P   A +N     V +  GS
Sbjct: 200 GSNL----DFLYNKTGWAFAALCFVLAMTSGQMWNHIRGPP--YAHKNPHTGQVNYIHGS 253

May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. May be involved in Mg(2+) transport in epithelial cells.

Gallus gallus (taxid: 9031)

>sp|O35777|MAGT1_RAT Magnesium transporter protein 1 OS=Rattus norvegicus GN=Magt1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 138/323 (42%), Gaps = 28/323 (8%)

Query: 4   SPKMNHLILYFAAIIILLVSLSTSDSNSD-----LVSELLNLQS-QSEAGVIHLNDQLVS 57
           SP+    +   AA+ +LLVS   S S        LV +++ L    ++  VI +N     
Sbjct: 3   SPRWLWCVCATAAVTLLLVSKVPSASAQRKKEKVLVEKVIQLMEWTNQRPVIRMNG---D 59

Query: 58  RFLTSTKTP-RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKL 116
           +F    K P R YS+++ F A QLH +  +  ++   EF ++A+ +  ++    +   ++
Sbjct: 60  KFRPLVKAPPRNYSVIVMFTALQLHRQCVV-CKQADEEFQILANFWRYSS----AFTNRI 114

Query: 117 FFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176
           FF  ++F E    F +  +NS P      P  K  + D+ +++   F+  AE +A ++  
Sbjct: 115 FFAMVDFDEGSDVFQMLNMNSAPTFINFPPKGKPKRADTYELQVRGFS--AEQIARWIAD 172

Query: 177 RTKLTVGPIHHPPLLSKKQIGLIVVVI--LIWIPFMAKKIFAGETLLHDRKIWLLGSVFV 234
           RT + +  I  P       +GL++ VI  L+++        +    L ++  W   ++  
Sbjct: 173 RTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLR------RSNMEFLFNKTGWAFAALCF 226

Query: 235 YFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM-QLGAEGFAVGFLYTIVGLLLA 293
                SG M N IR  P   A +N     V +  GS   Q  AE   V      V L + 
Sbjct: 227 VLAMTSGQMWNHIRGPP--YAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNGGVTLGMV 284

Query: 294 LMTHGLVRVKSVSIQRWVMIVSL 316
           L+         +  +R + I  +
Sbjct: 285 LLCEAAASDMDIGKRRMMCIAGI 307

May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. May be involved in Mg(2+) transport in epithelial cells.

Rattus norvegicus (taxid: 10116)

>sp|Q7ZV50|MAGT1_DANRE Magnesium transporter protein 1 OS=Danio rerio GN=magt1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 138/315 (43%), Gaps = 31/315 (9%)

Query: 10  LILYFAAIIILLVSLSTSDSNSDLVSELLN--LQSQSEAGVIHLNDQLVSRFLTSTKTPR 67
           LI+ F  + +  + L+       L+SE ++  ++  S+  V+ LN +   R + +   PR
Sbjct: 6   LIVVFLVVCLHDMRLNGQKKKETLLSEKVSQMMEWVSKRAVVRLNGEKFKRLVRAH--PR 63

Query: 68  PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ 127
            YS+++ F A Q   +  +  ++   E+ ++A+S+  ++    +   ++FF  ++F E  
Sbjct: 64  NYSVIVMFTALQPQRQCGV-CRQADEEYQILANSWRYSS----AFTNRIFFAMVDFDEGS 118

Query: 128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHH 187
             F +  +NS P         K  + D+ +++   FA  AE +A +V  RT + +  I  
Sbjct: 119 DVFQMLNMNSAPTFINFPAKGKPKRADTYELQVRGFA--AEQLARWVADRTDVHIRVIRP 176

Query: 188 PPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNII 247
           P       +GL    +L +I  +A         L ++ +W   ++       SG M N I
Sbjct: 177 PNYAGPLMLGL----LLAFIGSLAYLRRNNLEFLFNKNVWAFSALCFVLIMTSGQMWNHI 232

Query: 248 RKMPMFLADRNDPNKLVFFYQGSGM-QLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVS 306
           R  P   A +N     V +  GS   Q  AE         IV L  A +T G+V +   +
Sbjct: 233 RGPP--YAHKNPNTGQVSYIHGSSQAQFVAET-------HIVLLFNAAVTIGMVLLHEAA 283

Query: 307 ------IQRWVMIVS 315
                 ++R +M V+
Sbjct: 284 TSGLDIVKRKIMCVA 298

Cell surface magnesium transporter.

Danio rerio (taxid: 7955)

>sp|Q9H0U3|MAGT1_HUMAN Magnesium transporter protein 1 OS=Homo sapiens GN=MAGT1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 31  SDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQE 90
           S+ VS+L+   ++    VI +N     R + +   PR YS+++ F A QLH +  +  ++
Sbjct: 38  SEKVSQLMEWTNKRP--VIRMNGDKFRRLVKAP--PRNYSVIVMFTALQLHRQCVV-CKQ 92

Query: 91  LRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKS 150
              EF ++A+S+  ++    +   ++FF  ++F E    F +  +NS P         K 
Sbjct: 93  ADEEFQILANSWRYSS----AFTNRIFFAMVDFDEGSDVFQMLNMNSAPTFINFPAKGKP 148

Query: 151 LKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVI--LIWIP 208
            + D+ +++   F+  AE +A ++  RT + +  I  P       +GL++ VI  L+++ 
Sbjct: 149 KRGDTYELQVRGFS--AEQIARWIADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLR 206

Query: 209 FMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQ 268
                  +    L ++  W   ++       SG M N IR  P   A +N     V +  
Sbjct: 207 ------RSNMEFLFNKTGWAFAALCFVLAMTSGQMWNHIRGPP--YAHKNPHTGHVNYIH 258

Query: 269 GS 270
           GS
Sbjct: 259 GS 260

May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. May be involved in Mg(2+) transport in epithelial cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
255554977	349	Tumor suppressor candidate, putative [Ri	0.991	0.985	0.722	1e-142
225444373	339	PREDICTED: uncharacterized protein LOC10	0.919	0.941	0.735	1e-138
356536045	334	PREDICTED: uncharacterized protein LOC10	0.939	0.976	0.717	1e-136
255641270	336	unknown [Glycine max]	0.939	0.970	0.706	1e-135
356575803	336	PREDICTED: uncharacterized protein LOC10	0.939	0.970	0.706	1e-135
449433934	344	PREDICTED: polyubiquitin-like isoform 3	0.936	0.944	0.689	1e-133
15220609	346	OST3 and OST6 domain-containing protein	0.902	0.904	0.673	1e-128
297840375	346	OST3/OST6 family protein [Arabidopsis ly	0.896	0.898	0.674	1e-127
83032259	346	unknown [Brassica rapa]	0.902	0.904	0.669	1e-124
224116098	312	predicted protein [Populus trichocarpa]	0.899	1.0	0.739	1e-123

>gi|255554977|ref|XP_002518526.1| Tumor suppressor candidate, putative [Ricinus communis] gi|223542371|gb|EEF43913.1| Tumor suppressor candidate, putative [Ricinus communis]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/350 (72%), Positives = 296/350 (84%), Gaps = 6/350 (1%)

Query: 1   MAISPKMN--HLILYFAAIIILLVSLSTSDSN-SDLVSELLNLQSQSEAGVIHLNDQLVS 57
           MAIS K+   HL+L     + L  S++ S S+  DLV+ELL+LQSQS  GVIHLND  +S
Sbjct: 1   MAISAKLTITHLLLV-TTFLSLFTSVTISASDPQDLVTELLSLQSQSSTGVIHLNDHSIS 59

Query: 58  RFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPS-SRGKL 116
           RFLTSTKTPRPYS+LIFFDA QLH K ELHLQ+L +EFSLVASSFI NN D  S S GKL
Sbjct: 60  RFLTSTKTPRPYSLLIFFDAKQLHEKAELHLQDLHHEFSLVASSFINNNADQSSASYGKL 119

Query: 117 FFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS 176
           FFC +EFKESQS+F+LF VNSLPHIRLV P+ K+ KD S  M+QGDF+RMAESM+DF++S
Sbjct: 120 FFCDIEFKESQSTFSLFGVNSLPHIRLVNPNVKNPKD-SDAMDQGDFSRMAESMSDFIES 178

Query: 177 RTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYF 236
           RTKL+VGPIH PP +S+ Q+   +V +LIW+PFM KK+  G+TLLHD +IWL G+VFVYF
Sbjct: 179 RTKLSVGPIHRPPPISRNQMISAIVCLLIWMPFMIKKLLTGQTLLHDWRIWLSGAVFVYF 238

Query: 237 FSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMT 296
           FSVSGAMHNIIRKMPMFLADRNDPNKL+FFYQGSGMQLGAEGFA+GFLYT+VGLLLA +T
Sbjct: 239 FSVSGAMHNIIRKMPMFLADRNDPNKLIFFYQGSGMQLGAEGFAIGFLYTVVGLLLAFIT 298

Query: 297 HGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKTGYGVHGFWPSSW 346
           H LV VK+V++QR+VM+VSL+ISFWAVNKVIYLDNWKTGYGVH FWPSSW
Sbjct: 299 HVLVMVKNVTVQRFVMVVSLVISFWAVNKVIYLDNWKTGYGVHAFWPSSW 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444373|ref|XP_002267126.1| PREDICTED: uncharacterized protein LOC100243455 [Vitis vinifera] gi|147770840|emb|CAN74174.1| hypothetical protein VITISV_019222 [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/321 (73%), Positives = 277/321 (86%), Gaps = 2/321 (0%)

Query: 27  SDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPEL 86
           S + SD V+ELL+LQS+S++GVIHL+D  +SRFLTST TPRPYSILIFFDA QLH+KPEL
Sbjct: 21  SGAESDRVAELLSLQSRSKSGVIHLDDHSLSRFLTSTTTPRPYSILIFFDATQLHDKPEL 80

Query: 87  HLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGP 146
           +LQ LR+EF L+ASSFI+NN D+PS+  KLFFC +EFKESQSSFA F + SLPHIRLVGP
Sbjct: 81  NLQGLRSEFGLLASSFISNNKDSPSA-SKLFFCDIEFKESQSSFAQFGITSLPHIRLVGP 139

Query: 147 DAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIW 206
           D KSLKD S QMEQGD +RMA+SM+DFV+SRTKL+VGPI  PP+ SKKQ+G  V   L+W
Sbjct: 140 DVKSLKD-SEQMEQGDISRMADSMSDFVESRTKLSVGPIKRPPMFSKKQLGFFVAAFLVW 198

Query: 207 IPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFF 266
            PF+ KK+ AG+TLLHD KIWL  +VFVYFFSVSG MHNIIRKMPMFLADRNDP+KL+FF
Sbjct: 199 APFVVKKVLAGQTLLHDSKIWLGSAVFVYFFSVSGTMHNIIRKMPMFLADRNDPSKLIFF 258

Query: 267 YQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKV 326
           YQGSGMQLGAEGFA+GFLYTIVGLLLA +TH LVRVK+V++QR +M+ +L ISF AV KV
Sbjct: 259 YQGSGMQLGAEGFAIGFLYTIVGLLLAFVTHVLVRVKNVTVQRVIMLFALFISFLAVKKV 318

Query: 327 IYLDNWKTGYGVHGFWPSSWN 347
           + LDNWKTGYG+H FWPSSWN
Sbjct: 319 VSLDNWKTGYGIHAFWPSSWN 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536045|ref|XP_003536551.1| PREDICTED: uncharacterized protein LOC100789480 [Glycine max]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/333 (71%), Positives = 287/333 (86%), Gaps = 7/333 (2%)

Query: 16  AIIILLVSLSTSDSNSD-LVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIF 74
           +++IL+V +S++ ++SD  VSELL+LQS+S++GVI LNDQ ++RFLTS KTPRPYSIL+F
Sbjct: 8   SLLILMVFISSAMASSDERVSELLSLQSRSKSGVIRLNDQSLARFLTSVKTPRPYSILLF 67

Query: 75  FDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFA 134
           FDA QLH+KPEL L ELRNEFS+V+SSF+ANN  N     KLFFC +EFKESQ +F+ F 
Sbjct: 68  FDAAQLHDKPELRLTELRNEFSIVSSSFLANNPSN----TKLFFCDIEFKESQLTFSQFG 123

Query: 135 VNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKK 194
           VN+LPHIRL+GP A  LKD S  M+QGDF+R+A+SMA+FV+S+TKL+VGPIH PPL S+ 
Sbjct: 124 VNALPHIRLIGPTA-GLKD-SEPMDQGDFSRLADSMAEFVESKTKLSVGPIHRPPLFSRN 181

Query: 195 QIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFL 254
           QI L+ V ILIWIPF  KK+ AG+T+LHD K+WL GSVFVYFFSVSGAMHNIIRKMPMFL
Sbjct: 182 QIILLTVFILIWIPFFLKKVIAGQTILHDPKVWLAGSVFVYFFSVSGAMHNIIRKMPMFL 241

Query: 255 ADRNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIV 314
            DRNDP+KLVFFYQGSGMQLGAEGFAVGFLYT+VGLLLA  THGLVRV +VS+QR VMI 
Sbjct: 242 VDRNDPSKLVFFYQGSGMQLGAEGFAVGFLYTVVGLLLAFTTHGLVRVSNVSVQRVVMIF 301

Query: 315 SLLISFWAVNKVIYLDNWKTGYGVHGFWPSSWN 347
           +LL+SF AV +V+YLDNWKTGYG+HGFWPSSWN
Sbjct: 302 ALLVSFLAVKQVVYLDNWKTGYGIHGFWPSSWN 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641270|gb|ACU20912.1| unknown [Glycine max]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/331 (70%), Positives = 287/331 (86%), Gaps = 5/331 (1%)

Query: 18  IILLVSLSTS-DSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFD 76
           +IL+V +S++  S+ + VSEL++LQS+S++G+I LNDQ ++RFLT+ KTPRPYSIL+FFD
Sbjct: 10  LILMVFVSSAIASDDERVSELVSLQSRSKSGLIRLNDQSLARFLTAVKTPRPYSILLFFD 69

Query: 77  AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVN 136
           A QLH+KPEL L ELRNEFS+V+SSF+ANN  NP +  KLFFC +EFKESQ SF+ F VN
Sbjct: 70  AAQLHDKPELRLTELRNEFSIVSSSFLANN--NPPNTNKLFFCDIEFKESQLSFSQFGVN 127

Query: 137 SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQI 196
           +LPHIRL+GP+   LKD S  M+QGDF+R+A+SMA+FV+S+T L+VGPIH PPL S+ Q+
Sbjct: 128 ALPHIRLIGPNM-GLKD-SESMDQGDFSRLADSMAEFVESKTNLSVGPIHRPPLFSRNQL 185

Query: 197 GLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLAD 256
            L+ V IL+WIPF+ KK+ AG+T+LHD K+WL GSVFVYFFSVSGAMHNIIRKMPMFL D
Sbjct: 186 VLLTVFILLWIPFLLKKLLAGQTILHDPKVWLAGSVFVYFFSVSGAMHNIIRKMPMFLVD 245

Query: 257 RNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSL 316
           RNDP+KLVFFYQGSGMQLGAEGFAVGFLYT+VGLLLA MTHGLVRV +VS+QR VMI +L
Sbjct: 246 RNDPSKLVFFYQGSGMQLGAEGFAVGFLYTVVGLLLAFMTHGLVRVSNVSVQRVVMIFAL 305

Query: 317 LISFWAVNKVIYLDNWKTGYGVHGFWPSSWN 347
           L+SF AV +V+YLDNWKTGYG+HGFWPSSWN
Sbjct: 306 LVSFLAVKRVVYLDNWKTGYGIHGFWPSSWN 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575803|ref|XP_003556026.1| PREDICTED: uncharacterized protein LOC100793228 [Glycine max]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/331 (70%), Positives = 287/331 (86%), Gaps = 5/331 (1%)

Query: 18  IILLVSLSTS-DSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFD 76
           +IL+V +S++  S+ + VSEL++LQS+S++G+I LNDQ ++RFLT+ KTPRPYSIL+FFD
Sbjct: 10  LILMVFVSSAIASDDERVSELVSLQSRSKSGLIRLNDQSLARFLTAVKTPRPYSILLFFD 69

Query: 77  AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVN 136
           A QLH+KPEL L ELRNEFS+V+SSF+ANN  NP +  KLFFC +EFKESQ SF+ F VN
Sbjct: 70  AAQLHDKPELRLTELRNEFSIVSSSFLANN--NPPNTNKLFFCDIEFKESQLSFSQFGVN 127

Query: 137 SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQI 196
           +LPHIRL+GP+   LKD S  M+QGDF+R+A+SMA+FV+S+T L+VGPIH PPL S+ Q+
Sbjct: 128 ALPHIRLIGPNM-GLKD-SESMDQGDFSRLADSMAEFVESKTNLSVGPIHRPPLFSRNQL 185

Query: 197 GLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLAD 256
            L+ V IL+WIPF+ KK+ AG+T+LHD K+WL GSVFVYFFSVSGAMHNIIRKMPMFL D
Sbjct: 186 VLLTVFILLWIPFLLKKLLAGQTILHDPKVWLAGSVFVYFFSVSGAMHNIIRKMPMFLVD 245

Query: 257 RNDPNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSL 316
           RNDP+KLVFFYQGSGMQLGAEGFAVGFLYT+VGLLLA MTHGLVRV +VS+QR VMI +L
Sbjct: 246 RNDPSKLVFFYQGSGMQLGAEGFAVGFLYTVVGLLLAFMTHGLVRVSNVSVQRVVMIFAL 305

Query: 317 LISFWAVNKVIYLDNWKTGYGVHGFWPSSWN 347
           L+SF AV +V+YLDNWKTGYG+HGFWPSSWN
Sbjct: 306 LVSFLAVKQVVYLDNWKTGYGIHGFWPSSWN 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433934|ref|XP_004134751.1| PREDICTED: polyubiquitin-like isoform 3 [Cucumis sativus]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/328 (68%), Positives = 277/328 (84%), Gaps = 3/328 (0%)

Query: 21  LVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQL 80
            V  S S S+SD V+ELL+LQS+S +GVIHL+DQ VSRFLT+ K+PRPYS+LIFFDA QL
Sbjct: 19  FVQYSLSSSDSDRVAELLDLQSRSPSGVIHLDDQSVSRFLTTPKSPRPYSLLIFFDALQL 78

Query: 81  HNKPELHLQELRNEFSLVASSFIANNVDNPS-SRGKLFFCYLEFKESQSSFALFAVNSLP 139
           H+K ELHL+ELR+EF LV+SSFIANN D  S SR KLFFC +EFK+SQ SF+LF VN+LP
Sbjct: 79  HDKSELHLKELRHEFGLVSSSFIANNPDPSSPSRSKLFFCEIEFKQSQPSFSLFGVNALP 138

Query: 140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLI 199
           H+RL+GP+    K D  QM+Q D++R+AESMA+FV+S+T L VGPI  PP+ SK Q+ ++
Sbjct: 139 HVRLIGPNQTPKKSD--QMDQSDYSRLAESMAEFVESKTSLVVGPIQRPPMFSKNQLVVL 196

Query: 200 VVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRND 259
            + +LI  PF  KK+ AGETLL+DRK+WL G++F+YFFSV+G MHNIIRKMPMFL DRND
Sbjct: 197 FIAMLISAPFALKKVIAGETLLNDRKVWLTGAIFIYFFSVAGTMHNIIRKMPMFLTDRND 256

Query: 260 PNKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLIS 319
           P+KLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLA MTH LV+V++V+IQR  MI++L +S
Sbjct: 257 PSKLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLAFMTHVLVKVRNVNIQRVFMIIALFVS 316

Query: 320 FWAVNKVIYLDNWKTGYGVHGFWPSSWN 347
           FWAV KV+YLDNWKTGYG+HG+WPSSWN
Sbjct: 317 FWAVKKVVYLDNWKTGYGIHGYWPSSWN 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220609|ref|NP_176372.1| OST3 and OST6 domain-containing protein [Arabidopsis thaliana] gi|75213403|sp|Q9SYB5.1|OST3B_ARATH RecName: Full=Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B; Flags: Precursor gi|4508079|gb|AAD21423.1| Hypothetical protein [Arabidopsis thaliana] gi|332195765|gb|AEE33886.1| OST3 and OST6 domain-containing protein [Arabidopsis thaliana]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/315 (67%), Positives = 266/315 (84%), Gaps = 2/315 (0%)

Query: 33  LVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELR 92
           L++EL++L+S SE+GVIHL+D  +S+FLTS  TPRPYS+L+FFDA QLH+K EL LQELR
Sbjct: 34  LLNELVSLRSTSESGVIHLDDHGISKFLTSASTPRPYSLLVFFDATQLHSKNELRLQELR 93

Query: 93  NEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLK 152
            EF +V++SF+ANN  N S   KLFFC +EF +SQSSF LF VN+LPHIRLV P   +L+
Sbjct: 94  REFGIVSASFLANN--NGSEGTKLFFCEIEFSKSQSSFQLFGVNALPHIRLVSPSISNLR 151

Query: 153 DDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAK 212
           D+S QM+Q D++R+AESMA+FV+ RTKL VGPI  PPLLSK QIG+IV +I+I  PF+ K
Sbjct: 152 DESGQMDQSDYSRLAESMAEFVEQRTKLKVGPIQRPPLLSKPQIGIIVALIVIATPFIIK 211

Query: 213 KIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM 272
           ++  GET+LHD ++WL G++F+YFFSV+G MHNIIRKMPMFL DRNDPNKLVFFYQGSGM
Sbjct: 212 RVLKGETILHDTRLWLSGAIFIYFFSVAGTMHNIIRKMPMFLQDRNDPNKLVFFYQGSGM 271

Query: 273 QLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNW 332
           QLGAEGFAVGFLYT+VGLLLA +T+ LVRVK+++ QR +M+++L ISFWAV KV+YLDNW
Sbjct: 272 QLGAEGFAVGFLYTVVGLLLAFVTNVLVRVKNITAQRLIMLLALFISFWAVKKVVYLDNW 331

Query: 333 KTGYGVHGFWPSSWN 347
           KTGYG+H +WPSSW 
Sbjct: 332 KTGYGIHPYWPSSWR 346

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840375|ref|XP_002888069.1| OST3/OST6 family protein [Arabidopsis lyrata subsp. lyrata] gi|297333910|gb|EFH64328.1| OST3/OST6 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/313 (67%), Positives = 264/313 (84%), Gaps = 2/313 (0%)

Query: 35  SELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE 94
           +EL++L+S SE+GVIHL+D  +S+FLTS  TPRPYS+L+FFDA QLH+K EL LQELR E
Sbjct: 36  NELVSLRSTSESGVIHLDDHGISKFLTSASTPRPYSLLVFFDATQLHSKNELRLQELRRE 95

Query: 95  FSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDD 154
           F +V++SF+ANN  N S   KLFFC +EF +SQSSF LF VN+LPHIRLV P   +L+D+
Sbjct: 96  FGIVSASFLANN--NGSEGTKLFFCEIEFSQSQSSFQLFGVNALPHIRLVSPSISNLRDE 153

Query: 155 SVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKI 214
           S QM+Q D++R+AESMA+FV+ RTKL VGPI  PPLLSK QIG+IV +I+I  PF+ K++
Sbjct: 154 SGQMDQSDYSRLAESMAEFVEQRTKLKVGPIQRPPLLSKPQIGVIVALIVIATPFIIKRV 213

Query: 215 FAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGMQL 274
             GET+LHD ++WL G++F+YFFSV+G MHNIIRKMPMFL DRNDPNKLVFFYQGSGMQL
Sbjct: 214 LKGETILHDSRLWLSGAIFIYFFSVAGTMHNIIRKMPMFLQDRNDPNKLVFFYQGSGMQL 273

Query: 275 GAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNWKT 334
           GAEGFAVGFLYT+VGLLLA +T+ LVRVK+++ QR +M+++L ISFWAV KV+YLDNWKT
Sbjct: 274 GAEGFAVGFLYTVVGLLLAFVTNVLVRVKNLTAQRLIMLLALFISFWAVKKVVYLDNWKT 333

Query: 335 GYGVHGFWPSSWN 347
           GYG+H +WPSSW 
Sbjct: 334 GYGIHPYWPSSWR 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83032259|gb|ABB97041.1| unknown [Brassica rapa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/315 (66%), Positives = 259/315 (82%), Gaps = 2/315 (0%)

Query: 33  LVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELR 92
           L +EL +L+S SE+GVIHL+D  +S+FL S+ TPRPYSIL+FFDA QLH+K EL LQELR
Sbjct: 34  LTNELASLRSNSESGVIHLDDHGISKFLISSPTPRPYSILLFFDATQLHSKTELRLQELR 93

Query: 93  NEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLK 152
            EF LV+++F+ANN  N S   KLFFC +EF  SQSSF  F VN+LPHIRLV      L 
Sbjct: 94  REFGLVSATFLANN--NGSDLNKLFFCEIEFSRSQSSFQRFGVNALPHIRLVTGSTAKLS 151

Query: 153 DDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAK 212
           D+S QM+Q DFAR+AESMA+FV+ RTKLTVGPI  PP LSK QI +IV +I+I  PF+ K
Sbjct: 152 DESGQMDQSDFARLAESMAEFVEQRTKLTVGPIQRPPFLSKAQISVIVAMIVIATPFVIK 211

Query: 213 KIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM 272
           +I  GETLLHD ++WL G++F+YFFSV+G MHNIIRKMPMFL DRNDPNKLVFFYQGSGM
Sbjct: 212 RILRGETLLHDHRLWLSGAIFIYFFSVAGTMHNIIRKMPMFLQDRNDPNKLVFFYQGSGM 271

Query: 273 QLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDNW 332
           QLGAEGFAVGFLYT+VGLLLA +T+ LVRV+++++QR VM+V+L++S WAV +V+YLDNW
Sbjct: 272 QLGAEGFAVGFLYTVVGLLLAFVTNVLVRVRNLNVQRLVMLVALVVSSWAVKQVVYLDNW 331

Query: 333 KTGYGVHGFWPSSWN 347
           KTGYG+H +WPSSW 
Sbjct: 332 KTGYGIHPYWPSSWQ 346

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116098|ref|XP_002317210.1| predicted protein [Populus trichocarpa] gi|222860275|gb|EEE97822.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/315 (73%), Positives = 270/315 (85%), Gaps = 3/315 (0%)

Query: 32  DLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQEL 91
           DLV+ELL L+SQS++GVIHLND +VSRFLTSTKTPRPY++LIFFDA  LH+K ELHLQ+L
Sbjct: 1   DLVTELLYLRSQSKSGVIHLNDHIVSRFLTSTKTPRPYTLLIFFDAKHLHSKTELHLQDL 60

Query: 92  RNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL 151
             EFSL++SSFI+NN    SS   LFFC +EFKESQ+SFALF VNSLPHIRLVGP+ K+ 
Sbjct: 61  HTEFSLLSSSFISNNDA--SSASSLFFCDVEFKESQNSFALFGVNSLPHIRLVGPNVKNP 118

Query: 152 KDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMA 211
           KD S QM+QGDF+RMAESMA+FV+SRTKLTVGPI+ PP+LS  QI  + V++LIW  F  
Sbjct: 119 KD-SEQMDQGDFSRMAESMAEFVESRTKLTVGPINRPPMLSTNQIAFLGVILLIWAFFFI 177

Query: 212 KKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSG 271
           KK+   +T LHD K+WLLG+VFVYFFSVSGAM NIIRKMPMFL DRNDPNKLVFFYQGSG
Sbjct: 178 KKLLTKDTFLHDWKVWLLGAVFVYFFSVSGAMFNIIRKMPMFLVDRNDPNKLVFFYQGSG 237

Query: 272 MQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWAVNKVIYLDN 331
           MQLGAEGFAVGFLYTIVGLLL ++TH LVRVK+ + QR VM VSL+ISFWAV KV++LDN
Sbjct: 238 MQLGAEGFAVGFLYTIVGLLLGVVTHVLVRVKNRTAQRVVMGVSLVISFWAVRKVVHLDN 297

Query: 332 WKTGYGVHGFWPSSW 346
           WKTGYGVH FWP+SW
Sbjct: 298 WKTGYGVHAFWPTSW 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2195743	346	OST3/6 "oligosaccharyltransfer	0.927	0.930	0.663	4.2e-118
TAIR|locus:2200086	343	AT1G11560 "AT1G11560" [Arabido	0.927	0.938	0.574	1.2e-95
UNIPROTKB|F1NVF1	299	TUSC3 "Uncharacterized protein	0.769	0.892	0.228	6.1e-11
UNIPROTKB|F1NLC6	300	TUSC3 "Uncharacterized protein	0.769	0.89	0.228	6.2e-11
UNIPROTKB|F1NJY1	301	TUSC3 "Uncharacterized protein	0.769	0.887	0.228	6.2e-11
FB|FBgn0032015	330	Ostgamma "Oligosaccharide tran	0.798	0.839	0.234	4.6e-10
ZFIN|ZDB-GENE-050522-381	300	tusc3 "tumor suppressor candid	0.769	0.89	0.221	9.9e-10
MGI|MGI:1914325	335	Magt1 "magnesium transporter 1	0.829	0.859	0.226	1.9e-09
WB|WBGene00022793	340	ZK686.3 [Caenorhabditis elegan	0.697	0.711	0.239	4.3e-09
UNIPROTKB|E2RDD3	347	TUSC3 "Uncharacterized protein	0.769	0.769	0.214	7.8e-09

TAIR|locus:2195743 OST3/6 "oligosaccharyltransferase subunit 3/6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 215/324 (66%), Positives = 267/324 (82%)

Query:    23 SLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHN 82
             S S SDS+SDL++EL++L+S SE+GVIHL+D  +S+FLTS  TPRPYS+L+FFDA QLH+
Sbjct:    24 SFSDSDSDSDLLNELVSLRSTSESGVIHLDDHGISKFLTSASTPRPYSLLVFFDATQLHS 83

Query:    83 KPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIR 142
             K EL LQELR EF +V++SF+ANN  N S   KLFFC +EF +SQSSF LF VN+LPHIR
Sbjct:    84 KNELRLQELRREFGIVSASFLANN--NGSEGTKLFFCEIEFSKSQSSFQLFGVNALPHIR 141

Query:   143 LVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXX 202
             LV P   +L+D+S QM+Q D++R+AESMA+FV+ RTKL VGPI  PPLLSK QIG     
Sbjct:   142 LVSPSISNLRDESGQMDQSDYSRLAESMAEFVEQRTKLKVGPIQRPPLLSKPQIGIIVAL 201

Query:   203 XXXWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNK 262
                  PF+ K++  GET+LHD ++WL G++F+YFFSV+G MHNIIRKMPMFL DRNDPNK
Sbjct:   202 IVIATPFIIKRVLKGETILHDTRLWLSGAIFIYFFSVAGTMHNIIRKMPMFLQDRNDPNK 261

Query:   263 LVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWA 322
             LVFFYQGSGMQLGAEGFAVGFLYT+VGLLLA +T+ LVRVK+++ QR +M+++L ISFWA
Sbjct:   262 LVFFYQGSGMQLGAEGFAVGFLYTVVGLLLAFVTNVLVRVKNITAQRLIMLLALFISFWA 321

Query:   323 VNKVIYLDNWKTGYGVHGFWPSSW 346
             V KV+YLDNWKTGYG+H +WPSSW
Sbjct:   322 VKKVVYLDNWKTGYGIHPYWPSSW 345

GO:0005576 "extracellular region" evidence=ISM

GO:0015157 "oligosaccharide transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006487 "protein N-linked glycosylation" evidence=IMP

GO:0008250 "oligosaccharyltransferase complex" evidence=IPI

TAIR|locus:2200086 AT1G11560 "AT1G11560" [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 186/324 (57%), Positives = 239/324 (73%)

Query:    23 SLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHN 82
             +L+   S+SDL +EL++L+S +E+GVI  N+  VS+F+TS  TPRPYS++IFFDA  LH 
Sbjct:    20 TLANPKSDSDLKNELVSLRSTAESGVISFNNDDVSKFITSVSTPRPYSLIIFFDAVHLHG 79

Query:    83 KPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIR 142
               +L L E R EF LV+++FI NN +N S+  KLFFC +E   S++SF  FAV SLPHI 
Sbjct:    80 NSQLRLPEFRREFRLVSATFITNN-NNESNGTKLFFCEIESTHSEASFRRFAVESLPHIS 138

Query:   143 LVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXX 202
             LV P  ++L + S QM+ GDF  +AESMA+FV+ +TKLTV  I  PPL+SK QIG     
Sbjct:   139 LVSPTTENLTE-SDQMDGGDFTGLAESMAEFVERQTKLTVCSIQRPPLISKTQIGIIVAI 197

Query:   203 XXXWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNK 262
                  P + KKI  GETLLHD +IWL+G+VFVYFFSVSG MHNIIR+MPM++ D  D +K
Sbjct:   198 IIISTPILIKKILKGETLLHDHRIWLVGAVFVYFFSVSGTMHNIIREMPMYIKDYEDSSK 257

Query:   263 LVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSLLISFWA 322
              VFF + S MQLGAEGF VGFLYT+VGLLLA +T+ +VRVK +  QR  M+++L ISFWA
Sbjct:   258 FVFFIEESEMQLGAEGFFVGFLYTVVGLLLAFVTNVVVRVKKLDEQRMAMLLALSISFWA 317

Query:   323 VNKVIYLDNWKTGYGVHGFWPSSW 346
             V KV+YLDNWKTGY ++ +WPSSW
Sbjct:   318 VRKVVYLDNWKTGYEIYPYWPSSW 341

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0015157 "oligosaccharide transmembrane transporter activity" evidence=ISS

UNIPROTKB|F1NVF1 TUSC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 65/284 (22%), Positives = 123/284 (43%)

Query:    40 LQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVA 99
             ++  S   VI +N     RF+ +   PR YS+++ F A Q   +  +  ++   E+ ++A
Sbjct:    10 MEWSSRRSVIRMNGDKFRRFVKAP--PRNYSVIVMFTALQPQRQCSV-CRQANEEYQVLA 66

Query:   100 SSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME 159
             +S+  ++  +     KLFF  +++ E    F    +NS P      P  K  + D+  ++
Sbjct:    67 NSWRYSSAFS----NKLFFTIVDYDEGADVFQQLNMNSAPTFMHFPPKGKPKRADTFDLQ 122

Query:   160 QGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXXXWIPFMAKKIFAGET 219
             +  FA  AE +A ++  RT + +  +  PP  S              + ++ +       
Sbjct:   123 RIGFA--AEQLAKWIADRTDVHIR-VFRPPNYSGTIALALLVSLVGGLLYLRRNNLE--- 176

Query:   220 LLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM-QLGAEG 278
              ++++  W + ++ V F   SG M N IR  P   A +N  N  V +  GS   Q  AE 
Sbjct:   177 FIYNKTGWAMAALCVVFAMTSGQMWNHIRGPPY--AHKNPQNGQVSYIHGSSQAQFVAES 234

Query:   279 FAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSL-LISFW 321
               +  L   + + + L+         V  +R + +V L L+ F+
Sbjct:   235 HIILLLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFF 278

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1NLC6 TUSC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 65/284 (22%), Positives = 123/284 (43%)

Query:    40 LQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVA 99
             ++  S   VI +N     RF+ +   PR YS+++ F A Q   +  +  ++   E+ ++A
Sbjct:    10 MEWSSRRSVIRMNGDKFRRFVKAP--PRNYSVIVMFTALQPQRQCSV-CRQANEEYQVLA 66

Query:   100 SSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME 159
             +S+  ++  +     KLFF  +++ E    F    +NS P      P  K  + D+  ++
Sbjct:    67 NSWRYSSAFS----NKLFFTIVDYDEGADVFQQLNMNSAPTFMHFPPKGKPKRADTFDLQ 122

Query:   160 QGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXXXWIPFMAKKIFAGET 219
             +  FA  AE +A ++  RT + +  +  PP  S              + ++ +       
Sbjct:   123 RIGFA--AEQLAKWIADRTDVHIR-VFRPPNYSGTIALALLVSLVGGLLYLRRNNLE--- 176

Query:   220 LLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM-QLGAEG 278
              ++++  W + ++ V F   SG M N IR  P   A +N  N  V +  GS   Q  AE 
Sbjct:   177 FIYNKTGWAMAALCVVFAMTSGQMWNHIRGPPY--AHKNPQNGQVSYIHGSSQAQFVAES 234

Query:   279 FAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSL-LISFW 321
               +  L   + + + L+         V  +R + +V L L+ F+
Sbjct:   235 HIILLLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFF 278

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1NJY1 TUSC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 65/284 (22%), Positives = 123/284 (43%)

Query:    40 LQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVA 99
             ++  S   VI +N     RF+ +   PR YS+++ F A Q   +  +  ++   E+ ++A
Sbjct:    10 MEWSSRRSVIRMNGDKFRRFVKAP--PRNYSVIVMFTALQPQRQCSV-CRQANEEYQVLA 66

Query:   100 SSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME 159
             +S+  ++  +     KLFF  +++ E    F    +NS P      P  K  + D+  ++
Sbjct:    67 NSWRYSSAFS----NKLFFTIVDYDEGADVFQQLNMNSAPTFMHFPPKGKPKRADTFDLQ 122

Query:   160 QGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXXXWIPFMAKKIFAGET 219
             +  FA  AE +A ++  RT + +  +  PP  S              + ++ +       
Sbjct:   123 RIGFA--AEQLAKWIADRTDVHIR-VFRPPNYSGTIALALLVSLVGGLLYLRRNNLE--- 176

Query:   220 LLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM-QLGAEG 278
              ++++  W + ++ V F   SG M N IR  P   A +N  N  V +  GS   Q  AE 
Sbjct:   177 FIYNKTGWAMAALCVVFAMTSGQMWNHIRGPPY--AHKNPQNGQVSYIHGSSQAQFVAES 234

Query:   279 FAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSL-LISFW 321
               +  L   + + + L+         V  +R + +V L L+ F+
Sbjct:   235 HIILLLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFF 278

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008250 "oligosaccharyltransferase complex" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0050890 "cognition" evidence=IEA

FB|FBgn0032015 Ostgamma "Oligosaccharide transferase gamma subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 70/298 (23%), Positives = 132/298 (44%)

Query:    26 TSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPE 85
             T  S S+ V  L+++ ++    ++  N      ++ S   PR YS+++   A     + +
Sbjct:    30 TGLSLSEKVQNLVDMNAKKP--LLRFNGPKFREYVKSA--PRNYSMIVMLTALAPSRQCQ 85

Query:    86 LHLQELRNEFSLVASSF-IANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLV 144
             +  +   +EF++VA+S+  ++   N     KLFF  ++F +    F L  +N+ P     
Sbjct:    86 I-CRHAHDEFAIVANSYRFSSTYSN-----KLFFAMVDFDDGSEVFQLLRLNTAPVFMHF 139

Query:   145 GPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXX 204
                 K    D++ + +  FA  A+S+A FV  RT +T+  I  PP  S            
Sbjct:   140 PAKGKPKGADTMDIHRVGFA--ADSIAKFVAERTDITIR-IFRPPNYSGTVAMITLVALV 196

Query:   205 XWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLV 264
                 ++ +        L+++ +W   +VF  F  +SG M N IR  P+    +N    + 
Sbjct:   197 GSFLYIRRNNLE---FLYNKNLWGAIAVFFCFAMISGQMWNHIRGPPLVHKSQN--GGVA 251

Query:   265 FFYQGSGMQLGAEGFAVGFLYTIVGL-LLALMTHGLVRVKSVS-IQRWVMIVSLLISF 320
             + +  S  QL  E + V FL  ++ L ++ L+  G  +  + + I     +V L + F
Sbjct:   252 YIHGSSQGQLVVETYIVMFLNAMIVLGMILLIESGTPKAHNKNRIMAMTGLVLLTVFF 309

GO:0035010 "encapsulation of foreign target" evidence=IMP

ZFIN|ZDB-GENE-050522-381 tusc3 "tumor suppressor candidate 3" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 9.9e-10, P = 9.9e-10
 Identities = 63/284 (22%), Positives = 122/284 (42%)

Query:    40 LQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVA 99
             ++  S   VI +N     RF+ +   PR YS+++ F A Q   +  +  ++   E+ ++A
Sbjct:    10 MEWSSRRSVIRMNGDKFRRFVKAP--PRNYSVIVMFTALQPQRQCSV-CRQANEEYQVLA 66

Query:   100 SSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME 159
             +S+  ++  +     KLFF  +++ E    F    +NS P         K  + D+  ++
Sbjct:    67 NSWRYSSAFS----NKLFFTVVDYDEGADVFQQLNMNSAPTFMHFPAKGKPKRADTFDLQ 122

Query:   160 QGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXXXWIPFMAKKIFAGET 219
             +  FA  +E +A ++  RT + +  +  PP  S              + ++ +       
Sbjct:   123 RIGFA--SEQLAKWIADRTDVQIR-VFRPPNYSGTIALALLVSLVGGLLYLRRNNLE--- 176

Query:   220 LLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM-QLGAEG 278
              ++++  W + ++ V F   SG M N IR  P   A +N  N  V +  GS   Q  AE 
Sbjct:   177 FIYNKTGWAMAALCVVFAMTSGQMWNHIRGPPY--AHKNPQNGQVSYIHGSSQAQFVAES 234

Query:   279 FAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSL-LISFW 321
               +  L   + + + L+         V  +R + +V L L+ F+
Sbjct:   235 HIILLLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFF 278

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0015693 "magnesium ion transport" evidence=IGI

MGI|MGI:1914325 Magt1 "magnesium transporter 1" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 70/309 (22%), Positives = 132/309 (42%)

Query:    31 SDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQE 90
             S+ VS+L+   ++    VI +N     R + +   PR YS+++ F A QLH +  +  ++
Sbjct:    38 SEKVSQLMEWANKRP--VIRMNGDKFRRLVKAP--PRNYSVVVMFTALQLHRQCVV-CKQ 92

Query:    91 LRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKS 150
                EF ++A+S+  +N    +   ++FF  ++F E    F +  +NS P      P  K 
Sbjct:    93 ADEEFQILANSWRYSN----AFTNRIFFAMVDFDEGSDVFQMLNMNSAPTFINFPPKGKP 148

Query:   151 LKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXXXWIPFM 210
              + D+ +++   F+  AE +A ++  RT + +  I  P       +G         + ++
Sbjct:   149 KRADTYELQVRGFS--AEQIARWIADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLV-YL 205

Query:   211 AKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGS 270
              +   +    L ++  W   ++       SG M N IR  P   A +N     V +  GS
Sbjct:   206 RR---SNMEFLFNKTGWAFAALCFVLAMTSGQMWNHIRGPPY--AHKNPHTGHVNYIHGS 260

Query:   271 GM-QLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMI--VSLLISFWAVNKVI 327
                Q  AE   V      V L + L+         +  +R + I  + L++ F++    I
Sbjct:   261 SQAQFVAETHIVLLFNGGVTLGMVLLCEAATSDMDIGKRRMMCIAGIGLVVLFFSWMLSI 320

Query:   328 YLDNWKTGY 336
             +   +  GY
Sbjct:   321 FRSKYH-GY 328

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008250 "oligosaccharyltransferase complex" evidence=ISO

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050890 "cognition" evidence=ISO

WB|WBGene00022793 ZK686.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 159 (61.0 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 63/263 (23%), Positives = 118/263 (44%)

Query:    32 DLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKT-PRPYSILIFFDAHQLHNKPELHLQE 90
             D V  L++L S+    ++  N   + ++ T  +  PR YS+++ F A     +  +  + 
Sbjct:    25 DKVQNLVDLTSRQS--IVKFN---MDKWKTLVRMQPRNYSMIVMFTALSPGVQCPI-CKP 78

Query:    91 LRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKS 150
               +EF +VA+S       +   R K+FF  ++++++   F    +N+ P +   GP   +
Sbjct:    79 AYDEFMIVANSH--RYTSSEGDRRKVFFGIVDYEDAPQIFQQMNLNTAPILYHFGPKLGA 136

Query:   151 LKDDSVQMEQGDFARM---AESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXXXWI 207
              K    + EQ DF R    A+++  FV  +T++ V  I  PP  +   +          +
Sbjct:   137 KK----RPEQMDFQRQGFDADAIGRFVADQTEVHVRVIR-PPNYTAPVVIALFVALLLGM 191

Query:   208 PFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFY 267
              +M +        L +R +W    + + F  +SG M N IR  P  + + N      F +
Sbjct:   192 LYMKRNSL---DFLFNRTVWGFVCLAITFIFMSGQMWNHIRGPPFMITNPNTKEPS-FIH 247

Query:   268 QGSGMQLGAEGFAVGFLYTIVGL 290
               +  QL AE + VG LY ++ +
Sbjct:   248 GSTQFQLIAETYIVGLLYALIAI 270

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|E2RDD3 TUSC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 61/284 (21%), Positives = 122/284 (42%)

Query:    40 LQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVA 99
             ++  S   +  +N     +F+ +   PR YS+++ F A Q   +  +  ++   E+ ++A
Sbjct:    57 MEWSSRRSIFRMNGDKFRKFIKAP--PRNYSMIVMFTALQPQRQCSV-CRQANEEYQILA 113

Query:   100 SSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME 159
             +S+  ++    +   KLFF  +++ E    F    +NS P      P  +  + D+  ++
Sbjct:   114 NSWRYSS----AFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQ 169

Query:   160 QGDFARMAESMADFVQSRTKLTVGPIHHPPLLSKKQIGXXXXXXXXWIPFMAKKIFAGET 219
             +  FA  AE +A ++  RT + +  +  PP  S              + ++ +       
Sbjct:   170 RIGFA--AEQLAKWIADRTDVHIR-VFRPPNYSGTIALALLVSLVGGLLYLRRNNLE--- 223

Query:   220 LLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVFFYQGSGM-QLGAEG 278
              ++++  W + S+ + F   SG M N IR  P   A +N  N  V +  GS   Q  AE 
Sbjct:   224 FIYNKTGWAMVSLCIVFAMTSGQMWNHIRGPPY--AHKNPHNGQVSYIHGSSQAQFVAES 281

Query:   279 FAVGFLYTIVGLLLALMTHGLVRVKSVSIQRWVMIVSL-LISFW 321
               +  L   + + + L+         V  +R + +V L L+ F+
Sbjct:   282 HIILVLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFF 325

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISS

GO:0050890 "cognition" evidence=ISS

GO:0015693 "magnesium ion transport" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IDA

GO:0004579 "dolichyl-diphosphooligosaccharide-protein glycotransferase activity" evidence=IDA

GO:0008250 "oligosaccharyltransferase complex" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94I55	OST3_ORYSJ	No assigned EC number	0.6075	0.8933	0.9226	yes	no
Q9SYB5	OST3B_ARATH	No assigned EC number	0.6730	0.9020	0.9046	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00006911001	SubName- Full=Putative uncharacterized protein (Chromosome chr10 scaffold_179, whole genome shotgun sequence); (339 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002845001	SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (850 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
pfam04756	138	pfam04756, OST3_OST6, OST3 / OST6 family	4e-23

>gnl|CDD|218246 pfam04756, OST3_OST6, OST3 / OST6 family

 Score = 92.8 bits (231), Expect = 4e-23
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 36/163 (22%)

Query: 169 SMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWL 228
            +A FV  RTK+    I  PP +S   I + ++++LI                       
Sbjct: 1   QIAPFVADRTKVPDLKIPRPPNISIPSIMVCMLIVLI----------------------- 37

Query: 229 LGSVFVYFFSVSGAMHNIIRKMPMFLADRNDP---NKLVFFYQGSGMQLGAEGFAVGFLY 285
                 YF  +SG ++N+IR  P    D ++      +VF +  S  Q G EG  V FLY
Sbjct: 38  -----SYFLIISGTIYNVIRGPPFIGKDPDEHGKSRPVVFMHGRSQGQFGIEGLIVSFLY 92

Query: 286 TIVGLLLALMTHGLVRVKSVSIQRWVM-----IVSLLISFWAV 323
           T+ GL   L+ +   + K    Q  ++     +  +++SF+A+
Sbjct: 93  TMGGLGFILLDYVNKKSKKKGKQNRILLAAIGLTLIVVSFFAI 135

The proteins in this family are part of a complex of eight ER proteins that transfers core oligosaccharide from dolichol carrier to Asn-X-Ser/Thr motifs. This family includes both OST3 and OST6, each of which contains four predicted transmembrane helices. Disruption of OST3 and OST6 leads to a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	100.0
PF04756	160	OST3_OST6: OST3 / OST6 family; InterPro: IPR021149	99.97
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.73
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.72
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.7
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.7
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.7
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.68
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.68
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.67
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.66
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.64
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.63
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.63
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.62
PRK09381	109	trxA thioredoxin; Provisional	99.61
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.6
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.6
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.58
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.57
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.57
PTZ00102	477	disulphide isomerase; Provisional	99.55
PRK10996	139	thioredoxin 2; Provisional	99.54
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.54
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.53
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.52
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.52
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.52
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.51
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.5
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.49
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.49
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.47
PLN02309	457	5'-adenylylsulfate reductase	99.47
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.47
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.44
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.42
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.41
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.41
PHA02278	103	thioredoxin-like protein	99.4
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.39
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.38
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.38
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.36
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.35
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.34
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.31
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.31
PTZ00102	477	disulphide isomerase; Provisional	99.31
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.29
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.28
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.27
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.24
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.2
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.19
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.16
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.15
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.14
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.11
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.11
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.1
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.1
PTZ00051	98	thioredoxin; Provisional	99.09
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.09
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.06
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.03
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.96
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.94
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.88
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.88
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.81
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.8
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.79
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.76
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.76
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.74
PTZ00062	204	glutaredoxin; Provisional	98.61
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.59
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.53
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.53
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.5
PHA02125	75	thioredoxin-like protein	98.46
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.4
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.39
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.38
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.36
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.34
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.28
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.27
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.26
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.26
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.2
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.19
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.15
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.12
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.1
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.09
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.07
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.06
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.02
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	97.95
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.93
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.88
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.86
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.78
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	97.71
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.7
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.58
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.56
smart00594	122	UAS UAS domain.	97.55
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	97.55
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.52
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.52
PF13728	215	TraF: F plasmid transfer operon protein	97.49
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.45
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.39
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.35
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.24
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.24
KOG3356	147	consensus Predicted membrane protein [Function unk	97.17
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.15
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.1
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.06
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.05
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	96.96
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.95
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	96.88
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	96.8
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	96.73
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.63
PTZ00056	199	glutathione peroxidase; Provisional	96.61
PRK11200	85	grxA glutaredoxin 1; Provisional	96.58
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	96.56
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	96.45
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	96.45
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	96.38
KOG1672	211	consensus ATP binding protein [Posttranslational m	96.16
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.15
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	96.15
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	96.13
PLN02412	167	probable glutathione peroxidase	96.12
PRK15000	200	peroxidase; Provisional	96.06
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.94
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	95.86
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.85
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	95.79
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	95.68
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	95.59
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	95.55
PRK13190	202	putative peroxiredoxin; Provisional	95.42
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	95.4
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	95.37
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	95.32
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	95.3
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	95.17
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	95.13
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	95.09
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.07
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	95.01
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	94.98
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	94.91
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	94.86
PTZ00253	199	tryparedoxin peroxidase; Provisional	94.78
PRK13599	215	putative peroxiredoxin; Provisional	94.71
PTZ00256	183	glutathione peroxidase; Provisional	94.61
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	94.48
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	94.46
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	94.4
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	94.33
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	94.26
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	94.22
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.18
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.09
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	93.97
PRK10329	81	glutaredoxin-like protein; Provisional	93.76
PRK13189	222	peroxiredoxin; Provisional	93.66
KOG3170	240	consensus Conserved phosducin-like protein [Signal	93.56
KOG3171	273	consensus Conserved phosducin-like protein [Signal	93.22
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	92.96
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	92.84
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	92.42
PRK13191	215	putative peroxiredoxin; Provisional	92.35
PTZ00137	261	2-Cys peroxiredoxin; Provisional	92.34
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	92.3
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	92.28
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	92.25
PRK10638	83	glutaredoxin 3; Provisional	91.68
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	91.4
PHA03050	108	glutaredoxin; Provisional	91.24
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	91.02
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	90.99
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	90.8
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	90.33
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	90.05
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	89.52
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	88.54
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	87.07
PRK10606	183	btuE putative glutathione peroxidase; Provisional	86.2
PF01307	104	Plant_vir_prot: Plant viral movement protein; Inte	85.27
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	84.76
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	84.71
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	83.27
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	82.93
PRK10824	115	glutaredoxin-4; Provisional	81.17
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	81.04

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-70  Score=506.13  Aligned_cols=309  Identities=35%  Similarity=0.550  Sum_probs=269.1

Q ss_pred             cCCCChhHHHHHHHHHh-cCCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           26 TSDSNSDLVSELLNLQS-QSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        26 ~~~~~~~~~~~L~~l~~-~s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      .+.+..|..+++.+|++ +++++||++||++|+.++  +.+||||+++|+|||.+++.+|+. |++++.||+.||+||+.
T Consensus        19 ~~~~~s~ls~kv~~L~~~ts~~~VI~~n~d~~~~~v--~~~prNys~IvmftA~~~~~~C~l-C~~~~~Ef~iva~S~r~   95 (331)
T KOG2603|consen   19 QAQTKSDLSNKVVQLMSWTSESGVIRMNDDKFSKFV--RPPPRNYSLIVMFTALQPHSQCQL-CLQAEEEFQIVANSWRY   95 (331)
T ss_pred             ccchhhHHHHHHHHHHhccCCCCeEEecCcchhhhc--cCCCCCeEEEEEccccCCCCcCch-hhhHHHHHHHHHHHhhc
Confidence            34444333566666666 678999999999999999  689999999999999999999999 89999999999999999


Q ss_pred             cCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCc
Q 048343          105 NNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGP  184 (347)
Q Consensus       105 ~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~  184 (347)
                      ++|++  ++.++||++||+||.+++||+++++++||+.+|+|..|+.+ ..+++++++.+..||++++|++++|.+++..
T Consensus        96 ~~~~s--n~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~-~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~s  172 (331)
T KOG2603|consen   96 NSPFS--NGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKK-RSDQMDQQDLGFEAEQIAQFVADRTKVNVRS  172 (331)
T ss_pred             cCCCC--CcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccccc-cCccchhhhcchhHHHHHHHHHHhhhheeee
Confidence            98763  45699999999999999999999999999999999877766 6788999888888999999999999999877


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHhhcchhhhhcCCCCceecCCCCCCceE
Q 048343          185 IHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLV  264 (347)
Q Consensus       185 i~~p~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~l~~k~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~  264 (347)
                      |+||+||++..+..++.+.+   ..++++.+..++++.+|.+|+++|+++++.|+||+|||+|||+||+++|+++ |+++
T Consensus       173 i~rPp~~s~~iivaliva~i---~~li~~k~~~l~fl~~r~~w~~lsl~i~f~~iSG~M~n~IR~~P~~~~dp~~-~~~~  248 (331)
T KOG2603|consen  173 IQRPPNYSKPIIVALIVALI---GGLIYKKRSNLTFLSNRTIWAVLSLFIVFFMISGQMWNHIRGPPYAIKDPHT-GKVV  248 (331)
T ss_pred             eecCCcccchhHHHHHHHHH---HHHHHHHhccchhhhhHHHHHHHHHhheeeeechhHHHHhcCCcceeeCCCC-CeEE
Confidence            99999999975444433333   3333433335788999999999999999999999999999999999999864 8899


Q ss_pred             EEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccccccCcc--chhHHHHHHHHHHHHHHHHHhhhhhccC-CCCcCcc
Q 048343          265 FFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVS--IQRWVMIVSLLISFWAVNKVIYLDNWKT-GYGVHGF  341 (347)
Q Consensus       265 yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~~~~--~~~~~~~~~~~~~f~~~s~l~s~~~~K~-~y~~~~~  341 (347)
                      ||++|+|+|||+|||+|+++|+++|+++++|++.+-..++..  +++...+.++.+.++.||+++++|+.|. |||+   
T Consensus       249 f~~g~Sq~Qf~aEtfiV~lly~~v~ll~vll~~~~~~~~~~~~~k~~~l~~~~i~~~~vFfs~~ls~f~~ky~gYPy---  325 (331)
T KOG2603|consen  249 FIHGSSQAQFGAETFIVGLLYGVVSLLMVLLTEAATSSKSIDYQKRKMLLIAGLSCVAVFFSVLLSVFRIKYPGYPY---  325 (331)
T ss_pred             EEeCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCc---
Confidence            999999999999999999999999999999999887777777  7788888888888999999999999998 6665   


Q ss_pred             CCCCCC
Q 048343          342 WPSSWN  347 (347)
Q Consensus       342 ~p~~~~  347 (347)
                      ||.+|.
T Consensus       326 ~~l~~~  331 (331)
T KOG2603|consen  326 SFLSWR  331 (331)
T ss_pred             CccccC
Confidence            888873

>PF04756 OST3_OST6: OST3 / OST6 family; InterPro: IPR021149 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose

Probab=99.97  E-value=1e-33  Score=247.57  Aligned_cols=142  Identities=31%  Similarity=0.458  Sum_probs=13.0

Q ss_pred             HHHHHHHhhcCCCCCcccCCCCchhHHHHHHHHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHhhcchhhhhcC
Q 048343          169 SMADFVQSRTKLTVGPIHHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIR  248 (347)
Q Consensus       169 ~l~~fi~~~t~~~i~~i~~p~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~l~~k~lW~~~sl~~i~~~isG~mfn~Ir  248 (347)
                      ++++|+++++++++++|+||+||++.......+++++++.++.||.  .++.++||.+|+++|++++++++||||||+||
T Consensus         1 ~~a~f~~~~t~i~~~~i~~P~~~~~~~~~i~~~i~~~~~~~~~k~~--~~~~~~~r~lw~~~sl~~~~~~~SG~mfn~Ir   78 (160)
T PF04756_consen    1 QIAPFVKFRTGIPIFKIYRPPNYSKPSIFITFFIVFVAVFLYIKRS--ILPFLRSRFLWAVLSLIIILLSTSGYMFNIIR   78 (160)
T ss_dssp             -HHHHHHHHHHHHT-------S----------------------------------------------------------
T ss_pred             ChhhHHHHHcCCCeeEEeCCCCcchhHHHHHHHHHHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5899999999998789999999988522222223233334445554  45677999999999999999999999999999


Q ss_pred             CCCceecCCCCCC--ceEEEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccccccCccch-hHHHHH
Q 048343          249 KMPMFLADRNDPN--KLVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTHGLVRVKSVSIQ-RWVMIV  314 (347)
Q Consensus       249 ~~P~~~~~~~~~g--~i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~~~p~~~~~~~~-~~~~~~  314 (347)
                      |+||+++|+|  |  .+.|++||+|+|||+|||++|++|+++|+++++|++.+|+.++.+.+ +...+.
T Consensus        79 ~~P~~~~~~~--g~~~i~f~~g~~~~QfgiE~~iv~~ly~~la~~~i~L~~~~~~~~~~~~~~~~~~~~  145 (160)
T PF04756_consen   79 GPPFIGRDPD--GSRPIYFFSGGSQGQFGIEGQIVSFLYGVLALGFILLIYAAPKKKNSPKQRRILLIS  145 (160)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             CCCccccCCC--CCCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhhHHHH
Confidence            9999999999  8  78999999999999999999999999999999999999887766554 444333

These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex.; PDB: 3G7Y_A 3G9B_A 3GA4_A.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.73  E-value=2.4e-17  Score=136.10  Aligned_cols=105  Identities=17%  Similarity=0.074  Sum_probs=86.9

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+|++||++||++.+.  -..++..++|.|+|+    ||++ |+.+.|+|+++|+.+.          +++.|+++|++
T Consensus         8 ~~~v~~l~~~~f~~~~~--v~~~~~~vlV~FyA~----WC~~-Ck~l~p~~~~la~~~~----------~~v~~~~Vd~d   70 (113)
T cd03006           8 RSPVLDFYKGQLDYAEE--LRTDAEVSLVMYYAP----WDAQ-SQAARQEFEQVAQKLS----------DQVLFVAINCW   70 (113)
T ss_pred             CCCeEEechhhhHHHHh--cccCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHhc----------CCeEEEEEECC
Confidence            35699999999999731  112356899999999    8999 8999999999999872          35999999999


Q ss_pred             CCcchH-hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          125 ESQSSF-ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       125 ~~~~lf-~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      ++++++ ++++|+++||+.+|+.|  +.      ...|.|++++++|.+|+
T Consensus        71 ~~~~l~~~~~~I~~~PTl~lf~~g--~~------~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          71 WPQGKCRKQKHFFYFPVIHLYYRS--RG------PIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             CChHHHHHhcCCcccCEEEEEECC--cc------ceEEeCCCCHHHHHhhC
Confidence            999998 58999999999999864  32      24577889999998874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.72  E-value=6.4e-17  Score=131.57  Aligned_cols=107  Identities=18%  Similarity=0.252  Sum_probs=88.9

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +|+++|++||++.+   +.  +..++|.|+|+    ||++ |+++.|+|+++|+.+.+.+|    +.+++.|+++|++++
T Consensus         2 ~v~~l~~~~f~~~i---~~--~~~vlv~F~a~----wC~~-C~~~~p~~~~~a~~~~~~~~----~~~~~~~~~vd~d~~   67 (108)
T cd02996           2 EIVSLTSGNIDDIL---QS--AELVLVNFYAD----WCRF-SQMLHPIFEEAAAKIKEEFP----DAGKVVWGKVDCDKE   67 (108)
T ss_pred             ceEEcCHhhHHHHH---hc--CCEEEEEEECC----CCHH-HHhhHHHHHHHHHHHhhccC----CCCcEEEEEEECCCC
Confidence            68999999999987   33  23689999999    8999 89999999999998865442    224699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      ++++++++++++||+++|++|  ...     ...+.+.++.++|.+||
T Consensus        68 ~~l~~~~~v~~~Ptl~~~~~g--~~~-----~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          68 SDIADRYRINKYPTLKLFRNG--MMM-----KREYRGQRSVEALAEFV  108 (108)
T ss_pred             HHHHHhCCCCcCCEEEEEeCC--cCc-----ceecCCCCCHHHHHhhC
Confidence            999999999999999999864  311     14566788999999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.70  E-value=7.8e-17  Score=133.16  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=82.0

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-  124 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-  124 (347)
                      +|+++||++||++.+   ++  +..++|.|+|+||  ||+   +  .|+++++|.+|.+.       .+.|.+++||++ 
T Consensus         1 ~g~v~L~~~nF~~~v---~~--~~~vlV~F~A~~P--wc~---k--~~~~~~LA~e~~~a-------a~~v~lakVd~~d   61 (116)
T cd03007           1 KGCVDLDTVTFYKVI---PK--FKYSLVKFDTAYP--YGE---K--HEAFTRLAESSASA-------TDDLLVAEVGIKD   61 (116)
T ss_pred             CCeeECChhhHHHHH---hc--CCcEEEEEeCCCC--CCC---C--hHHHHHHHHHHHhh-------cCceEEEEEeccc
Confidence            479999999999998   33  3369999999763  775   2  25555666555432       235999999994 


Q ss_pred             ----CCcchHhHcCCC--CCceEEEEcCCCCCCCCccccccccccc-cCHHHHHHHHHhhc
Q 048343          125 ----ESQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMAESMADFVQSRT  178 (347)
Q Consensus       125 ----~~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a~~l~~fi~~~t  178 (347)
                          ++++++++|+|+  ++||+.+|+.+. .     +....|.++ +++++|.+||++++
T Consensus        62 ~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~-~-----~~~~~Y~G~~r~~~~lv~~v~~~~  116 (116)
T cd03007          62 YGEKLNMELGERYKLDKESYPVIYLFHGGD-F-----ENPVPYSGADVTVDALQRFLKGNT  116 (116)
T ss_pred             ccchhhHHHHHHhCCCcCCCCEEEEEeCCC-c-----CCCccCCCCcccHHHHHHHHHhcC
Confidence                567899999999  999999999642 1     112467786 99999999999874

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.70  E-value=9.4e-17  Score=129.36  Aligned_cols=102  Identities=21%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +++++|++||++.+   .++ +..++|.|||+    ||++ |+.+.|.|+++|+++          .+++.|+++|++++
T Consensus         2 ~v~~l~~~~f~~~i---~~~-~~~v~v~f~a~----wC~~-C~~~~p~~~~~~~~~----------~~~~~~~~vd~~~~   62 (104)
T cd03004           2 SVITLTPEDFPELV---LNR-KEPWLVDFYAP----WCGP-CQALLPELRKAARAL----------KGKVKVGSVDCQKY   62 (104)
T ss_pred             cceEcCHHHHHHHH---hcC-CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------cCCcEEEEEECCch
Confidence            58999999999997   332 33799999999    8999 899999999999987          23699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccC-HHHHHHHH
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARM-AESMADFV  174 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~-a~~l~~fi  174 (347)
                      ++++++++|+++||+++|+++ ++.      ...+.|..+ +++|.+||
T Consensus        63 ~~~~~~~~i~~~Pt~~~~~~g-~~~------~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          63 ESLCQQANIRAYPTIRLYPGN-ASK------YHSYNGWHRDADSILEFI  104 (104)
T ss_pred             HHHHHHcCCCcccEEEEEcCC-CCC------ceEccCCCCCHHHHHhhC
Confidence            999999999999999999975 232      255667666 89998885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.70  E-value=1.5e-16  Score=127.73  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=85.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ++|++||++||++.+   +.  +..++|.|||+    ||++ |+++.|+|+++|+.+          ++++.|+++|+++
T Consensus         1 ~~~~~l~~~~f~~~v---~~--~~~~~v~f~a~----wC~~-C~~~~p~~~~~a~~~----------~~~~~~~~vd~~~   60 (101)
T cd03003           1 PEIVTLDRGDFDAAV---NS--GEIWFVNFYSP----RCSH-CHDLAPTWREFAKEM----------DGVIRIGAVNCGD   60 (101)
T ss_pred             CCeEEcCHhhHHHHh---cC--CCeEEEEEECC----CChH-HHHhHHHHHHHHHHh----------cCceEEEEEeCCc
Confidence            368999999999987   33  24799999999    8999 899999999999987          2359999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHH
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADF  173 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~f  173 (347)
                      +++++++++++++||+++|+.|  ..      ...+.|.++.++|.+|
T Consensus        61 ~~~~~~~~~v~~~Pt~~~~~~g--~~------~~~~~G~~~~~~l~~f  100 (101)
T cd03003          61 DRMLCRSQGVNSYPSLYVFPSG--MN------PEKYYGDRSKESLVKF  100 (101)
T ss_pred             cHHHHHHcCCCccCEEEEEcCC--CC------cccCCCCCCHHHHHhh
Confidence            9999999999999999999864  32      2456778889988877

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.68  E-value=3e-16  Score=124.91  Aligned_cols=103  Identities=18%  Similarity=0.307  Sum_probs=89.2

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |+.+|+++|++.+   .. .+..++|+|+++    ||++ |+.+.|.++++|+++.          +++.|+++|.++++
T Consensus         1 v~~lt~~~f~~~i---~~-~~~~vvv~f~~~----~C~~-C~~~~~~~~~~~~~~~----------~~v~~~~vd~~~~~   61 (103)
T PF00085_consen    1 VIVLTDENFEKFI---NE-SDKPVVVYFYAP----WCPP-CKAFKPILEKLAKEYK----------DNVKFAKVDCDENK   61 (103)
T ss_dssp             SEEESTTTHHHHH---TT-TSSEEEEEEEST----TSHH-HHHHHHHHHHHHHHTT----------TTSEEEEEETTTSH
T ss_pred             CEECCHHHHHHHH---Hc-cCCCEEEEEeCC----CCCc-cccccceecccccccc----------cccccchhhhhccc
Confidence            6789999999998   33 246899999998    8999 8999999999999872          37999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++++++++++|++++|.+|  ...      .++.+.+++++|.+||+++
T Consensus        62 ~l~~~~~v~~~Pt~~~~~~g--~~~------~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   62 ELCKKYGVKSVPTIIFFKNG--KEV------KRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             HHHHHTTCSSSSEEEEEETT--EEE------EEEESSSSHHHHHHHHHHH
T ss_pred             hhhhccCCCCCCEEEEEECC--cEE------EEEECCCCHHHHHHHHHcC
Confidence            99999999999999999874  322      3566778999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.68  E-value=1.4e-15  Score=139.73  Aligned_cols=114  Identities=15%  Similarity=0.186  Sum_probs=91.9

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|+++|++||++.+....+..+..++|.|||+    ||++ |++++|+|+++|+++.          +.+.|+++|++
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyAp----WC~~-Ck~~~P~~e~la~~~~----------~~v~~~~VD~~   93 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAP----WCSH-CRKMAPAWERLAKALK----------GQVNVADLDAT   93 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECC----CChH-HHHHHHHHHHHHHHcC----------CCeEEEEecCc
Confidence            4579999999999987210111245789999999    8999 8999999999999872          35899999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      ++++++++|+|+++||+++|+.|  +..      +.+.+.++.+++.+|+.+.....
T Consensus        94 ~~~~l~~~~~I~~~PTl~~f~~G--~~v------~~~~G~~s~e~L~~fi~~~~~~~  142 (224)
T PTZ00443         94 RALNLAKRFAIKGYPTLLLFDKG--KMY------QYEGGDRSTEKLAAFALGDFKKA  142 (224)
T ss_pred             ccHHHHHHcCCCcCCEEEEEECC--EEE------EeeCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999953  321      22345688999999999887543

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.67  E-value=3e-16  Score=130.76  Aligned_cols=109  Identities=15%  Similarity=0.193  Sum_probs=89.1

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChh-hcc--cchHHHHHHHHHhhhcCCCCCCCCCceEEEE
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPEL-HLQ--ELRNEFSLVASSFIANNVDNPSSRGKLFFCY  120 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~-cC~--~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~  120 (347)
                      ..+.|++||++||++.+.  ++  +..+|++|+|+    ||++ .|+  .++|.++++|..+.+        .+++.|++
T Consensus         7 ~~~~v~~lt~~nF~~~v~--~~--~~~vvv~f~a~----wc~p~~Ck~~~~~p~~~~~aa~~l~--------~~~v~~~k   70 (120)
T cd03065           7 GKDRVIDLNEKNYKQVLK--KY--DVLCLLYHEPV----ESDKEAQKQFQMEELVLELAAQVLE--------DKGIGFGL   70 (120)
T ss_pred             CCcceeeCChhhHHHHHH--hC--CceEEEEECCC----cCChhhChhhcchhhHHHHHHHHhh--------cCCCEEEE
Confidence            345799999999999982  33  55788888887    7854 169  889999999988754        24699999


Q ss_pred             EEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          121 LEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       121 vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ||++++++++++|||+++||+++|+.|  +..      . +.|.++++.+.+||++.
T Consensus        71 VD~d~~~~La~~~~I~~iPTl~lfk~G--~~v------~-~~G~~~~~~l~~~l~~~  118 (120)
T cd03065          71 VDSKKDAKVAKKLGLDEEDSIYVFKDD--EVI------E-YDGEFAADTLVEFLLDL  118 (120)
T ss_pred             EeCCCCHHHHHHcCCccccEEEEEECC--EEE------E-eeCCCCHHHHHHHHHHH
Confidence            999999999999999999999999864  332      4 67888999999999874

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.66  E-value=7.3e-16  Score=123.49  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=85.0

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +|++||+++|++.+   +++    ++|.|||+    ||++ |+++.|.|+++|+.+.         ..++.|+++|++++
T Consensus         2 ~v~~l~~~~f~~~~---~~~----~lv~f~a~----wC~~-C~~~~p~~~~l~~~~~---------~~~v~~~~vd~~~~   60 (101)
T cd02994           2 NVVELTDSNWTLVL---EGE----WMIEFYAP----WCPA-CQQLQPEWEEFADWSD---------DLGINVAKVDVTQE   60 (101)
T ss_pred             ceEEcChhhHHHHh---CCC----EEEEEECC----CCHH-HHHHhHHHHHHHHhhc---------cCCeEEEEEEccCC
Confidence            59999999999987   442    68999999    8999 8999999999998641         23699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      ++++++++++++||+++|++|  ..       ..+.|.++.++|.+|+++
T Consensus        61 ~~~~~~~~i~~~Pt~~~~~~g--~~-------~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          61 PGLSGRFFVTALPTIYHAKDG--VF-------RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             HhHHHHcCCcccCEEEEeCCC--CE-------EEecCCCCHHHHHHHHhC
Confidence            999999999999999999764  21       345678899999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.64  E-value=1.5e-15  Score=123.06  Aligned_cols=106  Identities=19%  Similarity=0.301  Sum_probs=87.0

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-  125 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-  125 (347)
                      +|+++|+++|++.+   .++ +..++|.|+|+    ||++ |+++.|+|+++|+.+.          +++.|+.+|+++ 
T Consensus         1 ~v~~l~~~~~~~~i---~~~-~~~~lv~f~a~----wC~~-C~~~~~~~~~~a~~~~----------~~~~~~~v~~~~~   61 (109)
T cd03002           1 PVYELTPKNFDKVV---HNT-NYTTLVEFYAP----WCGH-CKNLKPEYAKAAKELD----------GLVQVAAVDCDED   61 (109)
T ss_pred             CeEEcchhhHHHHH---hcC-CCeEEEEEECC----CCHH-HHhhChHHHHHHHHhc----------CCceEEEEecCcc
Confidence            48999999999998   332 34699999999    8999 8999999999999872          358899999998 


Q ss_pred             -CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          126 -SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       126 -~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                       +++++++++++++|++++|+++. +.  .......|.|.++.+++.+||
T Consensus        62 ~~~~~~~~~~i~~~Pt~~~~~~~~-~~--~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          62 KNKPLCGKYGVQGFPTLKVFRPPK-KA--SKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             ccHHHHHHcCCCcCCEEEEEeCCC-cc--cccccccccCccCHHHHHHHh
Confidence             78999999999999999999863 11  011235667889999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.63  E-value=2.5e-15  Score=120.16  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=85.8

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |+++|+++|++.+   ..+ +..++|+|+|+    ||++ |+++.|+|+++|+.+.          +++.|+.+|.++++
T Consensus         2 v~~l~~~~~~~~i---~~~-~~~vlv~f~a~----~C~~-C~~~~~~~~~~~~~~~----------~~~~~~~id~~~~~   62 (103)
T cd03001           2 VVELTDSNFDKKV---LNS-DDVWLVEFYAP----WCGH-CKNLAPEWKKAAKALK----------GIVKVGAVDADVHQ   62 (103)
T ss_pred             eEEcCHHhHHHHH---hcC-CCcEEEEEECC----CCHH-HHHHhHHHHHHHHHhc----------CCceEEEEECcchH
Confidence            7899999999987   332 33588999998    8999 8999999999998872          36999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++++++++++|++++|+++. ..      ...+.++++.+++.+|+
T Consensus        63 ~~~~~~~i~~~P~~~~~~~~~-~~------~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          63 SLAQQYGVRGFPTIKVFGAGK-NS------PQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             HHHHHCCCCccCEEEEECCCC-cc------eeecCCCCCHHHHHHHh
Confidence            999999999999999999752 21      24567789999999996

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=9.9e-16  Score=143.36  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=97.7

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .+|+++|+.||++.|  ....|.-.|+|+||||    ||++ |+++.|..|+++.+|          ++++.+++||+|+
T Consensus        23 ~~I~dvT~anfe~~V--~~~S~~~PVlV~fWap----~~~~-c~qL~p~Lekla~~~----------~G~f~LakvN~D~   85 (304)
T COG3118          23 PGIKDVTEANFEQEV--IQSSREVPVLVDFWAP----WCGP-CKQLTPTLEKLAAEY----------KGKFKLAKVNCDA   85 (304)
T ss_pred             ccceechHhHHHHHH--HHHccCCCeEEEecCC----CCch-HHHHHHHHHHHHHHh----------CCceEEEEecCCc
Confidence            369999999999988  4677788999999999    8999 899999999999987          4689999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++.+..+|||+++||++.|..|  .+.      +.+.|..+.+++.+|+.+..+.
T Consensus        86 ~p~vAaqfgiqsIPtV~af~dG--qpV------dgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118          86 EPMVAAQFGVQSIPTVYAFKDG--QPV------DGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             chhHHHHhCcCcCCeEEEeeCC--cCc------cccCCCCcHHHHHHHHHHhcCh
Confidence            9999999999999999999974  443      4456677888999999998886

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.62  E-value=2.3e-15  Score=120.19  Aligned_cols=102  Identities=16%  Similarity=0.208  Sum_probs=85.4

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +++++|+++|++.+   +.+   .++|.|+|+    ||++ |+++.|+++++|+++...       ..++.|+++|.+++
T Consensus         1 ~~~~l~~~~f~~~~---~~~---~~lv~f~a~----wC~~-C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~   62 (102)
T cd03005           1 GVLELTEDNFDHHI---AEG---NHFVKFFAP----WCGH-CKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH   62 (102)
T ss_pred             CeeECCHHHHHHHh---hcC---CEEEEEECC----CCHH-HHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC
Confidence            58999999999998   332   389999999    8999 899999999999998431       23699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      ++++++++++++|++++|+++  ...      ..+.|.++.+++.+||
T Consensus        63 ~~~~~~~~v~~~Pt~~~~~~g--~~~------~~~~G~~~~~~l~~~i  102 (102)
T cd03005          63 RELCSEFQVRGYPTLLLFKDG--EKV------DKYKGTRDLDSLKEFV  102 (102)
T ss_pred             hhhHhhcCCCcCCEEEEEeCC--Cee------eEeeCCCCHHHHHhhC
Confidence            999999999999999999864  322      4566778888888875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.61  E-value=5.5e-15  Score=120.15  Aligned_cols=107  Identities=17%  Similarity=0.224  Sum_probs=89.5

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +|+|+++++++|++.+  .+.  +..++|.||++    ||++ |+.+.|.++++|+.+          ++++.|+.+|++
T Consensus         2 ~~~v~~~~~~~~~~~v--~~~--~~~vvv~f~~~----~C~~-C~~~~p~~~~l~~~~----------~~~~~~~~vd~~   62 (109)
T PRK09381          2 SDKIIHLTDDSFDTDV--LKA--DGAILVDFWAE----WCGP-CKMIAPILDEIADEY----------QGKLTVAKLNID   62 (109)
T ss_pred             CCcceeeChhhHHHHH--hcC--CCeEEEEEECC----CCHH-HHHHhHHHHHHHHHh----------CCCcEEEEEECC
Confidence            5789999999999876  233  44799999999    8999 899999999999987          236899999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++++++++++++++|++++|+.|  ...      ....|..+.+.+.+||.+++
T Consensus        63 ~~~~~~~~~~v~~~Pt~~~~~~G--~~~------~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         63 QNPGTAPKYGIRGIPTLLLFKNG--EVA------ATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             CChhHHHhCCCCcCCEEEEEeCC--eEE------EEecCCCCHHHHHHHHHHhc
Confidence            99999999999999999999753  332      33455677899999998765

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=3.5e-15  Score=127.18  Aligned_cols=106  Identities=12%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      .+-.+++++|++.|  .+.  +-+|+|.|+|+    ||+| |+.+.|..++++..|          .+++.|+++|+|++
T Consensus        44 ~~~~~s~~~~~~~V--i~S--~~PVlVdF~A~----WCgP-Ck~l~P~l~~~~~~~----------~g~~k~~kvdtD~~  104 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKV--INS--DVPVLVDFHAE----WCGP-CKMLGPILEELVSEY----------AGKFKLYKVDTDEH  104 (150)
T ss_pred             cccccCHHHHHHHH--Hcc--CCCEEEEEecC----cCcc-HhHhhHHHHHHHHhh----------cCeEEEEEEccccc
Confidence            35667889999998  354  34799999999    8999 899999999999987          36899999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      .++..+|+|+.+||+++|+.|  +..      +...|..+++.+.+||++..+
T Consensus       105 ~ela~~Y~I~avPtvlvfknG--e~~------d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  105 PELAEDYEISAVPTVLVFKNG--EKV------DRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             cchHhhcceeeeeEEEEEECC--EEe------eeecccCCHHHHHHHHHHHhc
Confidence            999999999999999999964  332      444667889999999998654

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.60  E-value=6.2e-15  Score=120.35  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=85.4

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-  125 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-  125 (347)
                      .|++++.++|++++.  ...++..++|.|+|+    ||++ |+++.|+|+++|+.+.         +.++.|+++|++. 
T Consensus         2 ~v~~~~~~~~~~~~~--~~~~~k~vlv~f~a~----wC~~-C~~~~~~~~~la~~~~---------~~~~~~~~vd~d~~   65 (109)
T cd02993           2 AVVTLSRAEIEALAK--GERRNQSTLVVLYAP----WCPF-CQAMEASYEELAEKLA---------GSNVKVAKFNADGE   65 (109)
T ss_pred             cceeccHHHHHHHHh--hhhcCCCEEEEEECC----CCHH-HHHHhHHHHHHHHHhc---------cCCeEEEEEECCcc
Confidence            589999999999972  233556899999999    8999 8999999999999873         2359999999997 


Q ss_pred             CcchHh-HcCCCCCceEEEEcCCCCCCCCccccccccccc-cCHHHHHHHH
Q 048343          126 SQSSFA-LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMAESMADFV  174 (347)
Q Consensus       126 ~~~lf~-~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a~~l~~fi  174 (347)
                      +..+++ .++++++||+++|+++. ..      ...|++. +++++|.+||
T Consensus        66 ~~~~~~~~~~v~~~Pti~~f~~~~-~~------~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          66 QREFAKEELQLKSFPTILFFPKNS-RQ------PIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             chhhHHhhcCCCcCCEEEEEcCCC-CC------ceeccCCCCCHHHHHhhC
Confidence            567776 59999999999999853 22      2456664 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.58  E-value=1.5e-14  Score=115.63  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=86.7

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-  125 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-  125 (347)
                      +|+++|+++|++.+   +.+ +..++|.|||+    ||++ |+++.|.++.+++.+..        .+++.|+++|.++ 
T Consensus         1 ~~~~l~~~~~~~~~---~~~-~~~~~v~f~a~----~C~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~id~~~~   63 (105)
T cd02998           1 NVVELTDSNFDKVV---GDD-KKDVLVEFYAP----WCGH-CKNLAPEYEKLAAVFAN--------EDDVVIAKVDADEA   63 (105)
T ss_pred             CeEEcchhcHHHHh---cCC-CCcEEEEEECC----CCHH-HHhhChHHHHHHHHhCC--------CCCEEEEEEECCCc
Confidence            47899999999987   333 23689999999    8999 89999999999998731        3479999999999 


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++++++++++++|++++|+++. ..      ...+.+.++.+++.+||
T Consensus        64 ~~~~~~~~~i~~~P~~~~~~~~~-~~------~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          64 NKDLAKKYGVSGFPTLKFFPKGS-TE------PVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             chhhHHhCCCCCcCEEEEEeCCC-CC------ccccCCccCHHHHHhhC
Confidence            89999999999999999999752 22      24566778899999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=7e-15  Score=147.23  Aligned_cols=114  Identities=12%  Similarity=0.163  Sum_probs=99.2

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .+..|.+||++||++.+   ++  +-.++|.|+||    ||++ |+.+.|||++.|......       +..+..++||.
T Consensus        23 ~~~~Vl~Lt~dnf~~~i---~~--~~~vlVeFYAP----WCgh-ck~LaPey~kAA~~Lke~-------~s~i~LakVDa   85 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETI---NG--HEFVLVEFYAP----WCGH-CKALAPEYEKAATELKEE-------GSPVKLAKVDA   85 (493)
T ss_pred             cccceEEEecccHHHHh---cc--CceEEEEEEch----hhhh-hhhhCcHHHHHHHHhhcc-------CCCceeEEeec
Confidence            35689999999999998   44  44789999999    8999 899999999999987532       45799999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++.+++.+|+|+++||+.+|..|.  .      ...|+|+|+++.+++|+.+++|-..
T Consensus        86 t~~~~~~~~y~v~gyPTlkiFrnG~--~------~~~Y~G~r~adgIv~wl~kq~gPa~  136 (493)
T KOG0190|consen   86 TEESDLASKYEVRGYPTLKIFRNGR--S------AQDYNGPREADGIVKWLKKQSGPAS  136 (493)
T ss_pred             chhhhhHhhhcCCCCCeEEEEecCC--c------ceeccCcccHHHHHHHHHhccCCCc
Confidence            9999999999999999999999753  2      2567899999999999999999654

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.57  E-value=2.1e-14  Score=114.17  Aligned_cols=102  Identities=15%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343           51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF  130 (347)
Q Consensus        51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf  130 (347)
                      ||+++|++.+   .  ++..++|.||++    ||+. |+.++|.++++|+.+..        .+++.|+++|+++++++.
T Consensus         1 l~~~~~~~~~---~--~~~~~~i~f~~~----~C~~-c~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~   62 (102)
T TIGR01126         1 LTASNFDDIV---L--SNKDVLVEFYAP----WCGH-CKNLAPEYEKLAKELKG--------DPDIVLAKVDATAEKDLA   62 (102)
T ss_pred             CchhhHHHHh---c--cCCcEEEEEECC----CCHH-HHhhChHHHHHHHHhcc--------CCceEEEEEEccchHHHH
Confidence            6889999997   3  355799999999    8999 89999999999998732        237999999999999999


Q ss_pred             hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++|+++++|++++|+++. .       ...+.|..+.++|.+||.+++
T Consensus        63 ~~~~i~~~P~~~~~~~~~-~-------~~~~~g~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        63 SRFGVSGFPTIKFFPKGK-K-------PVDYEGGRDLEAIVEFVNEKS  102 (102)
T ss_pred             HhCCCCcCCEEEEecCCC-c-------ceeecCCCCHHHHHHHHHhcC
Confidence            999999999999999752 2       245677788999999998753

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.55  E-value=7e-14  Score=141.35  Aligned_cols=111  Identities=17%  Similarity=0.234  Sum_probs=95.3

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.++++|+++|++.+   +..+  .++|.|||+    ||++ |+++.|+|+++|+.+.+.       +.++.|+++|+++
T Consensus        32 ~~v~~l~~~~f~~~i---~~~~--~~lv~f~a~----wC~~-Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~   94 (477)
T PTZ00102         32 EHVTVLTDSTFDKFI---TENE--IVLVKFYAP----WCGH-CKRLAPEYKKAAKMLKEK-------KSEIVLASVDATE   94 (477)
T ss_pred             CCcEEcchhhHHHHH---hcCC--cEEEEEECC----CCHH-HHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCC
Confidence            579999999999998   3322  699999998    8999 899999999999987532       3579999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++++++++++++|++++|.++  ..       ..|.|.++++++.+|+++.++..+
T Consensus        95 ~~~l~~~~~i~~~Pt~~~~~~g--~~-------~~y~g~~~~~~l~~~l~~~~~~~~  142 (477)
T PTZ00102         95 EMELAQEFGVRGYPTIKFFNKG--NP-------VNYSGGRTADGIVSWIKKLTGPAV  142 (477)
T ss_pred             CHHHHHhcCCCcccEEEEEECC--ce-------EEecCCCCHHHHHHHHHHhhCCCc
Confidence            9999999999999999999864  21       156778999999999999988655

>PRK10996 thioredoxin 2; Provisional

Probab=99.54  E-value=6.1e-14  Score=119.79  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=87.7

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      .++++++++|++.+   +.  +..++|.|||+    ||++ |+++.|.|+++++.+          ++++.|+++|.+++
T Consensus        36 ~~i~~~~~~~~~~i---~~--~k~vvv~F~a~----wC~~-C~~~~~~l~~l~~~~----------~~~v~~~~vd~~~~   95 (139)
T PRK10996         36 EVINATGETLDKLL---QD--DLPVVIDFWAP----WCGP-CRNFAPIFEDVAAER----------SGKVRFVKVNTEAE   95 (139)
T ss_pred             CCEEcCHHHHHHHH---hC--CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------CCCeEEEEEeCCCC
Confidence            48899999999987   33  45799999999    8999 899999999999876          24699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++++++++|+++|++++|+.  |+..      ....|..+.+++.+|+++.+
T Consensus        96 ~~l~~~~~V~~~Ptlii~~~--G~~v------~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996         96 RELSARFRIRSIPTIMIFKN--GQVV------DMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             HHHHHhcCCCccCEEEEEEC--CEEE------EEEcCCCCHHHHHHHHHHhC
Confidence            99999999999999999985  3332      34456678999999998753

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.54  E-value=4.3e-14  Score=111.00  Aligned_cols=101  Identities=19%  Similarity=0.296  Sum_probs=84.6

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS  128 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~  128 (347)
                      +++|+++|++.+   ++++  +++|.||++    ||++ |+++.|.++++|+.+.+        .+++.|+.+|++++++
T Consensus         1 ~~l~~~~~~~~i---~~~~--~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~   62 (101)
T cd02961           1 VELTDDNFDELV---KDSK--DVLVEFYAP----WCGH-CKALAPEYEKLAKELKG--------DGKVVVAKVDCTANND   62 (101)
T ss_pred             CcccHHHHHHHH---hCCC--cEEEEEECC----CCHH-HHhhhHHHHHHHHHhcc--------CCceEEEEeeccchHH
Confidence            478999999998   4434  799999998    8999 89999999999998741        3579999999999999


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      ++++++++++|++++|+++. ..      ..++.+..+++++.+|+
T Consensus        63 ~~~~~~i~~~Pt~~~~~~~~-~~------~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          63 LCSEYGVRGYPTIKLFPNGS-KE------PVKYEGPRTLESLVEFI  101 (101)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-cc------cccCCCCcCHHHHHhhC
Confidence            99999999999999999752 22      24566677889998874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.53  E-value=7e-14  Score=111.67  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=84.7

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      .|.+||+++|++.+   .++ +..++|+|+|+    ||++ |+.+.|+++++|+.+..        ..++.|+++|.+++
T Consensus         1 ~v~~l~~~~f~~~i---~~~-~~~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~id~~~~   63 (104)
T cd02995           1 PVKVVVGKNFDEVV---LDS-DKDVLVEFYAP----WCGH-CKALAPIYEELAEKLKG--------DDNVVIAKMDATAN   63 (104)
T ss_pred             CeEEEchhhhHHHH---hCC-CCcEEEEEECC----CCHH-HHHHhhHHHHHHHHhcC--------CCCEEEEEEeCcch
Confidence            37899999999987   333 24789999999    8999 89999999999998732        24699999999987


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                       ++..+++++++|++++|+++. +.     ....+.+..+.+++.+||
T Consensus        64 -~~~~~~~~~~~Pt~~~~~~~~-~~-----~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          64 -DVPSEFVVDGFPTILFFPAGD-KS-----NPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             -hhhhhccCCCCCEEEEEcCCC-cC-----CceEccCCcCHHHHHhhC
Confidence             578899999999999999752 11     224567788999998885

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.52  E-value=6.6e-14  Score=111.95  Aligned_cols=101  Identities=22%  Similarity=0.388  Sum_probs=84.4

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE--  125 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--  125 (347)
                      |+++++++|++.+   +..+  .++|.|||+    ||++ |+.+.|.++++++.+.+        .+.+.|+++|+++  
T Consensus         2 ~~~l~~~~~~~~~---~~~~--~~~v~f~a~----wC~~-C~~~~~~~~~~~~~~~~--------~~~~~~~~id~~~~~   63 (104)
T cd02997           2 VVHLTDEDFRKFL---KKEK--HVLVMFYAP----WCGH-CKKMKPEFTKAATELKE--------DGKGVLAAVDCTKPE   63 (104)
T ss_pred             eEEechHhHHHHH---hhCC--CEEEEEECC----CCHH-HHHhCHHHHHHHHHHhh--------CCceEEEEEECCCCc
Confidence            7899999999998   3333  789999999    8999 89999999999988742        2468999999998  


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++++++++++++|++++|+++  +.      ...+.+..+++++.+|+
T Consensus        64 ~~~~~~~~~i~~~Pt~~~~~~g--~~------~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          64 HDALKEEYNVKGFPTFKYFENG--KF------VEKYEGERTAEDIIEFM  104 (104)
T ss_pred             cHHHHHhCCCccccEEEEEeCC--Ce------eEEeCCCCCHHHHHhhC
Confidence            8899999999999999999864  32      24556677899998885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.52  E-value=9.2e-14  Score=120.47  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++.++++++++|++.+   ...++..++|.|+|+    ||++ |+++.|.++++|+++.         ++++.|+++|++
T Consensus        27 ~~~v~~l~~~~f~~~l---~~~~~~~vvV~Fya~----wC~~-Ck~l~p~l~~la~~~~---------~~~v~f~~VDvd   89 (152)
T cd02962          27 PEHIKYFTPKTLEEEL---ERDKRVTWLVEFFTT----WSPE-CVNFAPVFAELSLKYN---------NNNLKFGKIDIG   89 (152)
T ss_pred             CCccEEcCHHHHHHHH---HhcCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHcc---------cCCeEEEEEECC
Confidence            3579999999999987   333455799999999    8999 8999999999999872         236999999999


Q ss_pred             CCcchHhHcCCCC------CceEEEEcCC
Q 048343          125 ESQSSFALFAVNS------LPHIRLVGPD  147 (347)
Q Consensus       125 ~~~~lf~~~~I~s------vP~l~~fpp~  147 (347)
                      +++++.++++|++      +||+++|+.|
T Consensus        90 ~~~~la~~~~V~~~~~v~~~PT~ilf~~G  118 (152)
T cd02962          90 RFPNVAEKFRVSTSPLSKQLPTIILFQGG  118 (152)
T ss_pred             CCHHHHHHcCceecCCcCCCCEEEEEECC
Confidence            9999999999998      9999999864

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.52  E-value=6.6e-14  Score=114.73  Aligned_cols=85  Identities=11%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+.-++|.+||++.+   +.  +..+||+|+|+|.  ||++ |++++|.++++|+.|          ++++.|+++|++
T Consensus         9 ~~~~~~~~~~~~~~~~---~~--~~~~v~~f~~~~~--~cp~-c~~i~P~leela~e~----------~~~v~f~kVdid   70 (111)
T cd02965           9 RHGWPRVDAATLDDWL---AA--GGDLVLLLAGDPV--RFPE-VLDVAVVLPELLKAF----------PGRFRAAVVGRA   70 (111)
T ss_pred             hcCCcccccccHHHHH---hC--CCCEEEEecCCcc--cCcc-hhhhHhHHHHHHHHC----------CCcEEEEEEECC
Confidence            4568899999999987   22  3469999999931  4999 899999999999987          356999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      +++++.++|+|+++||+++|+.|
T Consensus        71 ~~~~la~~f~V~sIPTli~fkdG   93 (111)
T cd02965          71 DEQALAARFGVLRTPALLFFRDG   93 (111)
T ss_pred             CCHHHHHHcCCCcCCEEEEEECC
Confidence            99999999999999999999964

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.51  E-value=6.1e-14  Score=115.62  Aligned_cols=77  Identities=8%  Similarity=0.122  Sum_probs=66.6

Q ss_pred             hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH
Q 048343           53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL  132 (347)
Q Consensus        53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~  132 (347)
                      .++|++.+   .+..+..+||.|+|+    ||++ |+.+.|.++++|+.+          .+.+.|+++|+|+++++.++
T Consensus         2 ~~~~~~~i---~~~~~~~vVV~F~A~----WCgp-Ck~m~P~le~la~~~----------~~~v~f~kVDvD~~~~la~~   63 (114)
T cd02954           2 GWAVDQAI---LSEEEKVVVIRFGRD----WDPV-CMQMDEVLAKIAEDV----------SNFAVIYLVDIDEVPDFNKM   63 (114)
T ss_pred             HHHHHHHH---hccCCCEEEEEEECC----CChh-HHHHHHHHHHHHHHc----------cCceEEEEEECCCCHHHHHH
Confidence            46788887   322345799999999    8999 899999999999986          24689999999999999999


Q ss_pred             cCCCCCceEEEEcCC
Q 048343          133 FAVNSLPHIRLVGPD  147 (347)
Q Consensus       133 ~~I~svP~l~~fpp~  147 (347)
                      ++|+++||+++|+.|
T Consensus        64 ~~V~~iPTf~~fk~G   78 (114)
T cd02954          64 YELYDPPTVMFFFRN   78 (114)
T ss_pred             cCCCCCCEEEEEECC
Confidence            999999999999974

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.50  E-value=8.7e-14  Score=112.18  Aligned_cols=92  Identities=18%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-CCcchHhHc
Q 048343           55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-ESQSSFALF  133 (347)
Q Consensus        55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-~~~~lf~~~  133 (347)
                      ++.+++   ...|+..++|.|||+    ||++ |+++.|+|+++|+.+.           ++.|+++|.+ +++++.+++
T Consensus         8 ~~~~~~---~~~~g~~vlV~F~a~----WC~~-C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~~~~l~~~~   68 (100)
T cd02999           8 IALDLM---AFNREDYTAVLFYAS----WCPF-SASFRPHFNALSSMFP-----------QIRHLAIEESSIKPSLLSRY   68 (100)
T ss_pred             HHHHHH---HhcCCCEEEEEEECC----CCHH-HHhHhHHHHHHHHHhc-----------cCceEEEECCCCCHHHHHhc
Confidence            455565   344677899999999    8999 8999999999998761           3678899999 788999999


Q ss_pred             CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       134 ~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++++||+++|+++   ..      ..+.|.++.+++.+|+
T Consensus        69 ~V~~~PT~~lf~~g---~~------~~~~G~~~~~~l~~f~  100 (100)
T cd02999          69 GVVGFPTILLFNST---PR------VRYNGTRTLDSLAAFY  100 (100)
T ss_pred             CCeecCEEEEEcCC---ce------eEecCCCCHHHHHhhC
Confidence            99999999999864   22      4567788999999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.49  E-value=1.5e-13  Score=108.94  Aligned_cols=95  Identities=16%  Similarity=0.220  Sum_probs=78.3

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF  133 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~  133 (347)
                      ++|++.+   ..+++..++|.|||+    ||++ |+.+.|.++++++++          .+++.|+++|+++++++.++|
T Consensus         1 ~~f~~~i---~~~~~~~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~----------~~~~~~~~vd~~~~~~l~~~~   62 (96)
T cd02956           1 QNFQQVL---QESTQVPVVVDFWAP----RSPP-SKELLPLLERLAEEY----------QGQFVLAKVNCDAQPQIAQQF   62 (96)
T ss_pred             CChHHHH---HhcCCCeEEEEEECC----CChH-HHHHHHHHHHHHHHh----------CCcEEEEEEeccCCHHHHHHc
Confidence            3678777   334456899999999    8999 899999999999886          235899999999999999999


Q ss_pred             CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       134 ~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++++|++++|+.  |+..      ..+.+..+.++|.+||
T Consensus        63 ~i~~~Pt~~~~~~--g~~~------~~~~g~~~~~~l~~~l   95 (96)
T cd02956          63 GVQALPTVYLFAA--GQPV------DGFQGAQPEEQLRQML   95 (96)
T ss_pred             CCCCCCEEEEEeC--CEEe------eeecCCCCHHHHHHHh
Confidence            9999999999984  3332      3455667889998887

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.49  E-value=1.2e-13  Score=113.32  Aligned_cols=103  Identities=11%  Similarity=-0.019  Sum_probs=82.8

Q ss_pred             EcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcch
Q 048343           50 HLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSS  129 (347)
Q Consensus        50 ~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l  129 (347)
                      .++.++|++.+  .....+-.++|.|||+    ||++ |+.+.|+++++++.+.         +.++.|+++|+++++++
T Consensus         8 ~~~~~~~~~~~--~~~~~~~~vlV~F~a~----wC~~-C~~~~p~~~~l~~~~~---------~~~v~~~~vd~d~~~~l   71 (111)
T cd02963           8 SLTFSQYENEI--VPKSFKKPYLIKITSD----WCFS-CIHIEPVWKEVIQELE---------PLGVGIATVNAGHERRL   71 (111)
T ss_pred             eeeHHHHHHhh--ccccCCCeEEEEEECC----ccHh-HHHhhHHHHHHHHHHH---------hcCceEEEEeccccHHH
Confidence            56888898755  2322345799999999    8999 8999999999999873         23689999999999999


Q ss_pred             HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      .++++|+++|++++|+.|  +..      ....+..+.+.+.+||++
T Consensus        72 ~~~~~V~~~Pt~~i~~~g--~~~------~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          72 ARKLGAHSVPAIVGIING--QVT------FYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             HHHcCCccCCEEEEEECC--EEE------EEecCCCCHHHHHHHHhc
Confidence            999999999999999853  321      333556788999999875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.47  E-value=5.4e-13  Score=110.11  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.++++++++|++.+   .+++ .+++|.|||+    ||++ |+.+.|.|+++|+.+...       .+.+.|+++|++.
T Consensus         1 ~~v~~l~~~~f~~~i---~~~~-~~vvV~f~a~----wC~~-C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~   64 (114)
T cd02992           1 DPVIVLDAASFNSAL---LGSP-SAWLVEFYAS----WCGH-CRAFAPTWKKLARDLRKW-------RPVVRVAAVDCAD   64 (114)
T ss_pred             CCeEECCHHhHHHHH---hcCC-CeEEEEEECC----CCHH-HHHHhHHHHHHHHHHHhc-------CCceEEEEEeccc
Confidence            468999999999998   3333 5799999999    8999 899999999999987421       3469999999763


Q ss_pred             --CcchHhHcCCCCCceEEEEcCCC
Q 048343          126 --SQSSFALFAVNSLPHIRLVGPDA  148 (347)
Q Consensus       126 --~~~lf~~~~I~svP~l~~fpp~~  148 (347)
                        ++++.++++++++|++++|+++.
T Consensus        65 ~~~~~~~~~~~i~~~Pt~~lf~~~~   89 (114)
T cd02992          65 EENVALCRDFGVTGYPTLRYFPPFS   89 (114)
T ss_pred             hhhHHHHHhCCCCCCCEEEEECCCC
Confidence              67899999999999999999864

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.47  E-value=2.5e-13  Score=136.36  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=90.6

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|++|+++||++++.  ...++..++|.|+|+    ||++ |+.++|+|+++|+.+.         +.++.|+++|++
T Consensus       344 ~~~Vv~Lt~~nfe~ll~--~~~~~k~vlV~FyAp----WC~~-Cq~m~p~~e~LA~~~~---------~~~V~f~kVD~d  407 (457)
T PLN02309        344 SQNVVALSRAGIENLLK--LENRKEPWLVVLYAP----WCPF-CQAMEASYEELAEKLA---------GSGVKVAKFRAD  407 (457)
T ss_pred             CCCcEECCHHHHHHHHH--hhcCCCeEEEEEECC----CChH-HHHHHHHHHHHHHHhc---------cCCeEEEEEECC
Confidence            35799999999999972  344677899999999    8999 8999999999999873         236999999999


Q ss_pred             -CCcchHh-HcCCCCCceEEEEcCCCCCCCCccccccccc-cccCHHHHHHHHHhh
Q 048343          125 -ESQSSFA-LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD-FARMAESMADFVQSR  177 (347)
Q Consensus       125 -~~~~lf~-~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~-~~~~a~~l~~fi~~~  177 (347)
                       +++++.+ +++|+++||+++|+++...       ...|. +.++++.|.+||++.
T Consensus       408 ~~~~~la~~~~~I~~~PTil~f~~g~~~-------~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        408 GDQKEFAKQELQLGSFPTILLFPKNSSR-------PIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             CcchHHHHhhCCCceeeEEEEEeCCCCC-------eeecCCCCcCHHHHHHHHHHh
Confidence             7778886 6999999999999986322       13455 469999999999864

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.47  E-value=3.5e-13  Score=135.47  Aligned_cols=109  Identities=15%  Similarity=0.130  Sum_probs=88.1

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|++||++||++.+  ....++..++|.|||+    ||++ |+.+.|+|+++|+.|.         +..+.|+++|+|
T Consensus       350 ~~~Vv~L~~~nf~~~v--~~~~~~k~VLV~FyAp----WC~~-Ck~m~P~~eelA~~~~---------~~~v~~~kVdvD  413 (463)
T TIGR00424       350 SNNVVSLSRPGIENLL--KLEERKEAWLVVLYAP----WCPF-CQAMEASYLELAEKLA---------GSGVKVAKFRAD  413 (463)
T ss_pred             CCCeEECCHHHHHHHH--hhhcCCCeEEEEEECC----CChH-HHHHHHHHHHHHHHhc---------cCCcEEEEEECC
Confidence            3579999999999998  2244566899999999    8999 8999999999999873         124899999999


Q ss_pred             CCc-chH-hHcCCCCCceEEEEcCCCCCCCCccccccccc-cccCHHHHHHHHHh
Q 048343          125 ESQ-SSF-ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD-FARMAESMADFVQS  176 (347)
Q Consensus       125 ~~~-~lf-~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~-~~~~a~~l~~fi~~  176 (347)
                      +++ ++. ++++|+++||+++|+++...       ...|. +.+++++|.+||+.
T Consensus       414 ~~~~~~~~~~~~I~~~PTii~Fk~g~~~-------~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       414 GDQKEFAKQELQLGSFPTILFFPKHSSR-------PIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             CCccHHHHHHcCCCccceEEEEECCCCC-------ceeCCCCCCCHHHHHHHHHh
Confidence            764 444 68999999999999976311       13455 46999999999985

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.44  E-value=4.3e-13  Score=110.21  Aligned_cols=83  Identities=11%  Similarity=0.149  Sum_probs=72.1

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.+.++++++|++.+  .+.+++..++|.|||+    ||++ |+.+.|.++++|+.+           .++.|+++|.++
T Consensus         4 g~v~~i~~~~f~~~i--~~~~~~~~vvv~F~a~----~c~~-C~~l~~~l~~la~~~-----------~~v~f~~vd~~~   65 (113)
T cd02957           4 GEVREISSKEFLEEV--TKASKGTRVVVHFYEP----GFPR-CKILDSHLEELAAKY-----------PETKFVKINAEK   65 (113)
T ss_pred             ceEEEEcHHHHHHHH--HccCCCCEEEEEEeCC----CCCc-HHHHHHHHHHHHHHC-----------CCcEEEEEEchh
Confidence            348899999999988  2333346899999999    8999 899999999999876           147899999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      + ++.++++|+++|++++|+.|
T Consensus        66 ~-~l~~~~~i~~~Pt~~~f~~G   86 (113)
T cd02957          66 A-FLVNYLDIKVLPTLLVYKNG   86 (113)
T ss_pred             h-HHHHhcCCCcCCEEEEEECC
Confidence            9 99999999999999999964

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.42  E-value=8.5e-13  Score=132.19  Aligned_cols=113  Identities=14%  Similarity=0.201  Sum_probs=94.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|+++|+++|++.+   +.  +..++|.|||+    ||++ |+++.|+++++|+.+.+.       ..++.|+++|+++
T Consensus         1 ~~v~~l~~~~~~~~i---~~--~~~~~v~f~a~----wC~~-c~~~~~~~~~~a~~~~~~-------~~~v~~~~vd~~~   63 (462)
T TIGR01130         1 EDVLVLTKDNFDDFI---KS--HEFVLVEFYAP----WCGH-CKSLAPEYEKAADELKKK-------GPPIKLAKVDATE   63 (462)
T ss_pred             CCceECCHHHHHHHH---hc--CCCEEEEEECC----CCHH-HHhhhHHHHHHHHHHhhc-------CCceEEEEEECCC
Confidence            368999999999998   33  22689999999    8999 899999999999988542       3479999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++++++++|+++|++++|++|.  .     ....+.|.++++++.+|+.+.++..+
T Consensus        64 ~~~l~~~~~i~~~Pt~~~~~~g~--~-----~~~~~~g~~~~~~l~~~i~~~~~~~~  113 (462)
T TIGR01130        64 EKDLAQKYGVSGYPTLKIFRNGE--D-----SVSDYNGPRDADGIVKYMKKQSGPAV  113 (462)
T ss_pred             cHHHHHhCCCccccEEEEEeCCc--c-----ceeEecCCCCHHHHHHHHHHhcCCCc
Confidence            99999999999999999998652  2     02455677899999999999988554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.41  E-value=1.7e-12  Score=115.18  Aligned_cols=124  Identities=13%  Similarity=0.160  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHh-c-CCCCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC
Q 048343           32 DLVSELLNLQS-Q-SEAGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD  108 (347)
Q Consensus        32 ~~~~~L~~l~~-~-s~~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~  108 (347)
                      +|.++|.+.+. + .-..++++++ ++|.+.+.  +.+++..+||.|||+    ||++ |+.+.|.++.+|+.|      
T Consensus        46 ~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~--~~~~~~~VVV~Fya~----wc~~-Ck~m~~~l~~LA~~~------  112 (175)
T cd02987          46 QRMQEMHAKLPFGRRFGKVYELDSGEQFLDAID--KEGKDTTVVVHIYEP----GIPG-CAALNSSLLCLAAEY------  112 (175)
T ss_pred             HHHHHHHHhccccCCCCeEEEcCCHHHHHHHHH--hcCCCcEEEEEEECC----CCch-HHHHHHHHHHHHHHC------
Confidence            44455544321 1 1235999999 99999983  333445799999999    8999 899999999999876      


Q ss_pred             CCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccc-cccccCHHHHHHHHHh
Q 048343          109 NPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQ-GDFARMAESMADFVQS  176 (347)
Q Consensus       109 ~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~-~~~~~~a~~l~~fi~~  176 (347)
                           ..+.|+++|.++. ++.++|+++++||+++|+.|  +....-..+.. .....+++++..++.+
T Consensus       113 -----~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G--~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         113 -----PAVKFCKIRASAT-GASDEFDTDALPALLVYKGG--ELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             -----CCeEEEEEeccch-hhHHhCCCCCCCEEEEEECC--EEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence                 2589999999988 89999999999999999964  43200001111 1124678888888765

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01068 thioredoxin thioredoxin

Probab=99.41  E-value=1.9e-12  Score=102.32  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=81.3

Q ss_pred             cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343           51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF  130 (347)
Q Consensus        51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf  130 (347)
                      +|+++|++.+   .+. +-.+++.|+++    ||++ |+.+.|+++++++++          ++++.|+++|.++++++.
T Consensus         1 i~~~~~~~~~---~~~-~~~vvi~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~vd~~~~~~~~   61 (101)
T TIGR01068         1 LTDANFDETI---ASS-DKPVLVDFWAP----WCGP-CKMIAPILEELAKEY----------EGKVKFVKLNVDENPDIA   61 (101)
T ss_pred             CCHHHHHHHH---hhc-CCcEEEEEECC----CCHH-HHHhCHHHHHHHHHh----------cCCeEEEEEECCCCHHHH
Confidence            4678899887   332 33689999998    8999 899999999999876          236999999999999999


Q ss_pred             hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ++|+++++|++++|+.+  +..      ..+.+..+.+++.+|+++.
T Consensus        62 ~~~~v~~~P~~~~~~~g--~~~------~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        62 AKYGIRSIPTLLLFKNG--KEV------DRSVGALPKAALKQLINKN  100 (101)
T ss_pred             HHcCCCcCCEEEEEeCC--cEe------eeecCCCCHHHHHHHHHhh
Confidence            99999999999999753  321      3334556789999999875

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PHA02278 thioredoxin-like protein

Probab=99.40  E-value=1.3e-12  Score=106.01  Aligned_cols=93  Identities=10%  Similarity=0.058  Sum_probs=71.6

Q ss_pred             hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cc
Q 048343           53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QS  128 (347)
Q Consensus        53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~  128 (347)
                      -++|++.+   +.  +-.++|+|||+    ||++ |+.+.|.++++|+++.          .++.|+++|+|++    ++
T Consensus         4 ~~~~~~~i---~~--~~~vvV~F~A~----WCgp-Ck~m~p~l~~l~~~~~----------~~~~~~~vdvd~~~~d~~~   63 (103)
T PHA02278          4 LVDLNTAI---RQ--KKDVIVMITQD----NCGK-CEILKSVIPMFQESGD----------IKKPILTLNLDAEDVDREK   63 (103)
T ss_pred             HHHHHHHH---hC--CCcEEEEEECC----CCHH-HHhHHHHHHHHHhhhc----------CCceEEEEECCccccccHH
Confidence            36788887   32  33699999999    8999 8999999999997641          2466899999975    58


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHH
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADF  173 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~f  173 (347)
                      +.++++|+++||+++|+.|  +..      .+..|..+.+++.++
T Consensus        64 l~~~~~I~~iPT~i~fk~G--~~v------~~~~G~~~~~~l~~~  100 (103)
T PHA02278         64 AVKLFDIMSTPVLIGYKDG--QLV------KKYEDQVTPMQLQEL  100 (103)
T ss_pred             HHHHCCCccccEEEEEECC--EEE------EEEeCCCCHHHHHhh
Confidence            9999999999999999964  332      333455667777654

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.39  E-value=2.6e-12  Score=103.70  Aligned_cols=101  Identities=17%  Similarity=0.141  Sum_probs=80.4

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS  128 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~  128 (347)
                      .+++ ++|++..   +   +..++|.|+|+    ||++ |+.+.|+++++|+.+...       +.++.++++|+++.++
T Consensus         3 ~~~~-~~~~~~~---~---~~~vlv~f~a~----wC~~-C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~~~   63 (104)
T cd03000           3 LDLD-DSFKDVR---K---EDIWLVDFYAP----WCGH-CKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAYSS   63 (104)
T ss_pred             eech-hhhhhhc---c---CCeEEEEEECC----CCHH-HHhhChHHHHHHHHHHhc-------CCcEEEEEEECccCHh
Confidence            3444 6788853   2   22689999999    8999 899999999999987421       2469999999999999


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +.++++++++|++++|..+  ..       ..+.|..+.+.+.+|+++.
T Consensus        64 ~~~~~~I~~~Pt~~l~~~~--~~-------~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          64 IASEFGVRGYPTIKLLKGD--LA-------YNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             HHhhcCCccccEEEEEcCC--Cc-------eeecCCCCHHHHHHHHHhh
Confidence            9999999999999999632  21       2356678899999999763

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.38  E-value=2.2e-12  Score=104.36  Aligned_cols=96  Identities=8%  Similarity=0.060  Sum_probs=74.6

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc---c
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---S  128 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---~  128 (347)
                      +.++|++.+   ...++-.++|.|||+    ||++ |+.+.|.++++|+++           +++.|+++|.|+++   +
T Consensus         2 ~~~~~~~~i---~~~~~k~vvv~F~a~----wC~~-C~~~~p~l~~la~~~-----------~~v~~~~vd~d~~~~~~~   62 (103)
T cd02985           2 SVEELDEAL---KKAKGRLVVLEFALK----HSGP-SVKIYPTMVKLSRTC-----------NDVVFLLVNGDENDSTME   62 (103)
T ss_pred             CHHHHHHHH---HHcCCCEEEEEEECC----CCHh-HHHHhHHHHHHHHHC-----------CCCEEEEEECCCChHHHH
Confidence            467888887   333456899999999    8999 899999999999886           24889999999874   8


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +.++++|+++||+++|+.|  +..      .++.| ...+++.+-+.
T Consensus        63 l~~~~~V~~~Pt~~~~~~G--~~v------~~~~G-~~~~~l~~~~~  100 (103)
T cd02985          63 LCRREKIIEVPHFLFYKDG--EKI------HEEEG-IGPDELIGDVL  100 (103)
T ss_pred             HHHHcCCCcCCEEEEEeCC--eEE------EEEeC-CCHHHHHHHHH
Confidence            9999999999999999753  332      33333 44566665554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.38  E-value=3.5e-12  Score=102.89  Aligned_cols=97  Identities=9%  Similarity=-0.013  Sum_probs=76.7

Q ss_pred             cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343           51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF  130 (347)
Q Consensus        51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf  130 (347)
                      -|.++|++++   +.  +..++|.|||+    ||++ |+.+.|+++++++.+.         ++.+.|+++|.| ++++.
T Consensus         5 ~~~~~~~~~i---~~--~~~vvv~F~a~----wC~~-Ck~~~p~l~~~~~~~~---------~~~~~~~~vd~d-~~~~~   64 (102)
T cd02948           5 NNQEEWEELL---SN--KGLTVVDVYQE----WCGP-CKAVVSLFKKIKNELG---------DDLLHFATAEAD-TIDTL   64 (102)
T ss_pred             cCHHHHHHHH---cc--CCeEEEEEECC----cCHh-HHHHhHHHHHHHHHcC---------CCcEEEEEEeCC-CHHHH
Confidence            3778999987   33  33699999999    8999 8999999999998872         235889999999 77899


Q ss_pred             hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      ++|+++++|++++|+.|  +..      .+..| .+++.+.++|.+
T Consensus        65 ~~~~v~~~Pt~~~~~~g--~~~------~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          65 KRYRGKCEPTFLFYKNG--ELV------AVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             HHcCCCcCcEEEEEECC--EEE------EEEec-CChHHHHHHHhh
Confidence            99999999999999853  322      22233 467888888764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.36  E-value=3.4e-12  Score=105.21  Aligned_cols=105  Identities=12%  Similarity=0.111  Sum_probs=80.8

Q ss_pred             CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .+.++++ ++|++.+   +.+  -.++|.|+++    ||++ |+.+.|.++++|+.+           .++.|+++|.++
T Consensus         5 ~v~~i~~~~~~~~~i---~~~--~~vvV~f~a~----~c~~-C~~~~p~l~~la~~~-----------~~i~f~~Vd~~~   63 (113)
T cd02989           5 KYREVSDEKEFFEIV---KSS--ERVVCHFYHP----EFFR-CKIMDKHLEILAKKH-----------LETKFIKVNAEK   63 (113)
T ss_pred             CeEEeCCHHHHHHHH---hCC--CcEEEEEECC----CCcc-HHHHHHHHHHHHHHc-----------CCCEEEEEEccc
Confidence            4888888 8999998   333  3699999999    8999 899999999999875           147999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccc-cccc-cccCHHHHHHHH
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQM-EQGD-FARMAESMADFV  174 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~-~~~~-~~~~a~~l~~fi  174 (347)
                      ++++.++++++++|++++|..|  +..+..... +... ...+++++.+|+
T Consensus        64 ~~~l~~~~~v~~vPt~l~fk~G--~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          64 APFLVEKLNIKVLPTVILFKNG--KTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             CHHHHHHCCCccCCEEEEEECC--EEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999999999999999999964  332010011 1111 235688887776

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.35  E-value=5.9e-12  Score=107.67  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=82.3

Q ss_pred             hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH
Q 048343           53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL  132 (347)
Q Consensus        53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~  132 (347)
                      .++|++.+   ....+-.+||.|+|+    ||++ |+.+.|.++++|+.+          ++.++|+++|+|+++++.++
T Consensus        11 ~~e~d~~I---~~~~~~lVVvdF~A~----WCgp-Ck~m~p~l~~la~~~----------~~~~~~~kVDVDe~~dla~~   72 (142)
T PLN00410         11 GWAVDQAI---LAEEERLVVIRFGHD----WDET-CMQMDEVLASVAETI----------KNFAVIYLVDITEVPDFNTM   72 (142)
T ss_pred             HHHHHHHH---HhcCCCEEEEEEECC----CChh-HHHHHHHHHHHHHHc----------CCceEEEEEECCCCHHHHHH
Confidence            46788877   222355799999999    9999 899999999999986          34699999999999999999


Q ss_pred             cCCCCCceEE-EEcCCCCCCCCcccccccccc--------ccCHHHHHHHHHhh-----cCCCCCcccCCCCchh
Q 048343          133 FAVNSLPHIR-LVGPDAKSLKDDSVQMEQGDF--------ARMAESMADFVQSR-----TKLTVGPIHHPPLLSK  193 (347)
Q Consensus       133 ~~I~svP~l~-~fpp~~g~~~~~~~~~~~~~~--------~~~a~~l~~fi~~~-----t~~~i~~i~~p~~~~~  193 (347)
                      |+|++.|+++ +|+.|+. ..      +...|        ..++++|.+-+...     -|.-  -+..|.||+.
T Consensus        73 y~I~~~~t~~~ffk~g~~-~v------d~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~--~~~~~~~~~~  138 (142)
T PLN00410         73 YELYDPCTVMFFFRNKHI-MI------DLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRG--LVISPKDYST  138 (142)
T ss_pred             cCccCCCcEEEEEECCeE-EE------EEecccccccccccCCHHHHHHHHHHHHHHHhcCCe--EEECCCcccc
Confidence            9999887666 8886421 21      22222        35667776665432     2332  3556777754

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=5.4e-12  Score=102.95  Aligned_cols=84  Identities=11%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      +-.+||+|||+    ||++ |+.++|.|+++|..|          .+ +.|.++|+|+.+++.++++++++||+.+++.|
T Consensus        21 ~kliVvdF~a~----wCgP-Ck~i~P~~~~La~~y----------~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g   84 (106)
T KOG0907|consen   21 DKLVVVDFYAT----WCGP-CKAIAPKFEKLAEKY----------PD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG   84 (106)
T ss_pred             CCeEEEEEECC----CCcc-hhhhhhHHHHHHHHC----------CC-CEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence            45799999999    8999 899999999999987          23 99999999999999999999999999999864


Q ss_pred             CCCCCCccccccccccccCHHHHHHHHHh
Q 048343          148 AKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                        +..      ....| -..+.+.+.+++
T Consensus        85 --~~~------~~~vG-a~~~~l~~~i~~  104 (106)
T KOG0907|consen   85 --EEV------DEVVG-ANKAELEKKIAK  104 (106)
T ss_pred             --EEE------EEEec-CCHHHHHHHHHh
Confidence              322      22233 344566666554

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.31  E-value=1.3e-11  Score=111.10  Aligned_cols=122  Identities=13%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHhcCCC-CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCC
Q 048343           32 DLVSELLNLQSQSEA-GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNP  110 (347)
Q Consensus        32 ~~~~~L~~l~~~s~~-~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~  110 (347)
                      +|.++|.+.+.++.- .|.++++++|.+.+  ++.+++..+||.||++    ||++ |+.+.|.++++|..|        
T Consensus        67 kRl~el~~~~~~~~~G~v~eis~~~f~~eV--~~as~~~~VVV~Fya~----wc~~-C~~m~~~l~~LA~k~--------  131 (192)
T cd02988          67 KRLAEMKALAEKSKFGEVYEISKPDYVREV--TEASKDTWVVVHLYKD----GIPL-CRLLNQHLSELARKF--------  131 (192)
T ss_pred             HHHHHHHHhhhhCCCCeEEEeCHHHHHHHH--HhcCCCCEEEEEEECC----CCch-HHHHHHHHHHHHHHC--------
Confidence            445555554433333 49999999999876  2444556899999999    8999 899999999999986        


Q ss_pred             CCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHHh
Q 048343          111 SSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQS  176 (347)
Q Consensus       111 ~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~~  176 (347)
                         ..+.|+++|+++.   ...|+++++||+++|..|  +.......+....+ ..+.+++..+|.+
T Consensus       132 ---~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G--~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         132 ---PDTKFVKIISTQC---IPNYPDKNLPTILVYRNG--DIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             ---CCCEEEEEEhHHh---HhhCCCCCCCEEEEEECC--EEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence               1489999999864   578999999999999964  33200001111111 4678888777764

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.31  E-value=1.1e-11  Score=99.98  Aligned_cols=95  Identities=11%  Similarity=0.074  Sum_probs=74.2

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccC----C
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKE----S  126 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----~  126 (347)
                      ++|++..   +.  +..++|.|+|+    ||++ |+++.|.+   +++++.+.          +++.|+.+|.++    .
T Consensus         2 ~~~~~~~---~~--~k~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~~~~~----------~~~~~~~vd~~~~~~~~   61 (104)
T cd02953           2 AALAQAL---AQ--GKPVFVDFTAD----WCVT-CKVNEKVVFSDPEVQAALK----------KDVVLLRADWTKNDPEI   61 (104)
T ss_pred             HHHHHHH---Hc--CCeEEEEEEcc----hhHH-HHHHHHHhcCCHHHHHHHh----------CCeEEEEEecCCCCHHH
Confidence            4667765   22  34799999999    8999 89999998   67877662          269999999987    4


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++.++++++++|++++|.+++|+..      .++.|..+.+++.++|
T Consensus        62 ~~~~~~~~i~~~Pti~~~~~~~g~~~------~~~~G~~~~~~l~~~l  103 (104)
T cd02953          62 TALLKRFGVFGPPTYLFYGPGGEPEP------LRLPGFLTADEFLEAL  103 (104)
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCCCC------cccccccCHHHHHHHh
Confidence            68999999999999999987334432      4455667888888876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.31  E-value=1.1e-11  Score=125.32  Aligned_cols=111  Identities=12%  Similarity=0.140  Sum_probs=93.3

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|.+++.++|++.+  .+.  +..++|.|||+    ||++ |+.++|+|+++|+.+..        .+.+.|+++|.++
T Consensus       357 ~~v~~l~~~~f~~~v--~~~--~k~vlv~f~a~----wC~~-C~~~~p~~~~~a~~~~~--------~~~v~~~~id~~~  419 (477)
T PTZ00102        357 GPVKVVVGNTFEEIV--FKS--DKDVLLEIYAP----WCGH-CKNLEPVYNELGEKYKD--------NDSIIVAKMNGTA  419 (477)
T ss_pred             CCeEEecccchHHHH--hcC--CCCEEEEEECC----CCHH-HHHHHHHHHHHHHHhcc--------CCcEEEEEEECCC
Confidence            358999999999987  233  44799999999    8999 89999999999988732        3469999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      +....++++++++||+++|+++ ++.      ...+.|.++.+++.+||+++...
T Consensus       420 ~~~~~~~~~v~~~Pt~~~~~~~-~~~------~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        420 NETPLEEFSWSAFPTILFVKAG-ERT------PIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             CccchhcCCCcccCeEEEEECC-Ccc------eeEecCcCCHHHHHHHHHHcCCC
Confidence            9999999999999999999975 222      23567789999999999998764

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=9.8e-12  Score=113.49  Aligned_cols=107  Identities=18%  Similarity=0.137  Sum_probs=82.8

Q ss_pred             CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +||.+++ ++|++-+. ..|  -..++|+|||.    ||+| |+...|.|+.+|+.|-           +..|.+||+|+
T Consensus         2 ~Vi~v~~d~df~~~ls-~ag--~k~v~Vdfta~----wCGP-Ck~IaP~Fs~lankYp-----------~aVFlkVdVd~   62 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELS-AAG--GKLVVVDFTAS----WCGP-CKRIAPIFSDLANKYP-----------GAVFLKVDVDE   62 (288)
T ss_pred             CeEEecCcHHHHHhhh-ccC--ceEEEEEEEec----ccch-HHhhhhHHHHhhhhCc-----------ccEEEEEeHHH
Confidence            4777776 48888773 233  34899999999    9999 8999999999999882           56999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      .++++..+||+..||+++|..+  ...      +++.| -++..|.+-|+++.+..
T Consensus        63 c~~taa~~gV~amPTFiff~ng--~ki------d~~qG-Ad~~gLe~kv~~~~sts  109 (288)
T KOG0908|consen   63 CRGTAATNGVNAMPTFIFFRNG--VKI------DQIQG-ADASGLEEKVAKYASTS  109 (288)
T ss_pred             hhchhhhcCcccCceEEEEecC--eEe------eeecC-CCHHHHHHHHHHHhccC
Confidence            9999999999999999999864  322      33333 35666666666665543

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.28  E-value=1.1e-11  Score=101.72  Aligned_cols=76  Identities=9%  Similarity=0.124  Sum_probs=65.1

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF  133 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~  133 (347)
                      +.|++.+.  +. .+..+||.|+|+    ||++ |+.+.|.++++|+.+.          +.+.|++||+|+.+++.++|
T Consensus         3 ~~~d~~i~--~~-~~klVVVdF~a~----WC~p-Ck~mdp~l~ela~~~~----------~~~~f~kVDVDev~dva~~y   64 (114)
T cd02986           3 KEVDQAIK--ST-AEKVLVLRFGRD----EDAV-CLQLDDILSKTSHDLS----------KMASIYLVDVDKVPVYTQYF   64 (114)
T ss_pred             HHHHHHHH--hc-CCCEEEEEEeCC----CChh-HHHHHHHHHHHHHHcc----------CceEEEEEeccccHHHHHhc
Confidence            45677662  22 356899999999    8999 8999999999999872          24999999999999999999


Q ss_pred             CCCCCceEEEEcCC
Q 048343          134 AVNSLPHIRLVGPD  147 (347)
Q Consensus       134 ~I~svP~l~~fpp~  147 (347)
                      +|++.|+.++|..|
T Consensus        65 ~I~amPtfvffkng   78 (114)
T cd02986          65 DISYIPSTIFFFNG   78 (114)
T ss_pred             CceeCcEEEEEECC
Confidence            99999999999964

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.3e-11  Score=123.89  Aligned_cols=109  Identities=11%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|..+-.+||++++  .+.  ...++|.|+||    ||+| |++++|.|+++|+.|..        .++|.+|++|.+.
T Consensus       366 ~pVkvvVgknfd~iv--~de--~KdVLvEfyAP----WCgH-Ck~laP~~eeLAe~~~~--------~~~vviAKmDaTa  428 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIV--LDE--GKDVLVEFYAP----WCGH-CKALAPIYEELAEKYKD--------DENVVIAKMDATA  428 (493)
T ss_pred             CCeEEEeecCHHHHh--hcc--ccceEEEEcCc----ccch-hhhhhhHHHHHHHHhcC--------CCCcEEEEecccc
Confidence            359999999999998  343  34699999999    8999 89999999999999843        3579999999998


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      |.-  ..++++++|||++||.+. +     .++..|+++|+.+++..|+.+.-+
T Consensus       429 Nd~--~~~~~~~fPTI~~~pag~-k-----~~pv~y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  429 NDV--PSLKVDGFPTILFFPAGH-K-----SNPVIYNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             ccC--ccccccccceEEEecCCC-C-----CCCcccCCCcchHHHHhhhccCCC
Confidence            752  236778899999999863 2     234667889999999999987654

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.24  E-value=4.3e-11  Score=94.67  Aligned_cols=96  Identities=14%  Similarity=0.192  Sum_probs=74.6

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA  131 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~  131 (347)
                      +.++|++.+.  +.+ +..++|.|+|+    ||++ |+.+.|.++++++.+          .+++.|+++|.++.+++.+
T Consensus         1 s~~~~~~~~~--~~~-~~~v~v~f~~~----~C~~-C~~~~~~l~~l~~~~----------~~~i~~~~vd~~~~~~~~~   62 (97)
T cd02984           1 SEEEFEELLK--SDA-SKLLVLHFWAP----WAEP-CKQMNQVFEELAKEA----------FPSVLFLSIEAEELPEISE   62 (97)
T ss_pred             CHHHHHHHHh--hCC-CCEEEEEEECC----CCHH-HHHHhHHHHHHHHHh----------CCceEEEEEccccCHHHHH
Confidence            3578888872  222 45899999999    8999 899999999999876          1379999999999999999


Q ss_pred             HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +|+++++|++++|+.  |+..      .... +...++|.+.|
T Consensus        63 ~~~i~~~Pt~~~~~~--g~~~------~~~~-g~~~~~l~~~~   96 (97)
T cd02984          63 KFEITAVPTFVFFRN--GTIV------DRVS-GADPKELAKKV   96 (97)
T ss_pred             hcCCccccEEEEEEC--CEEE------EEEe-CCCHHHHHHhh
Confidence            999999999999975  3321      1112 34567776654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.20  E-value=7.4e-11  Score=97.19  Aligned_cols=90  Identities=10%  Similarity=0.128  Sum_probs=71.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      +..++|+|+|+    ||++ |+.++|.++++|..+           +++.|.++|.++++++.++|+++++|++++|..+
T Consensus        22 ~~~vvv~f~a~----wC~~-C~~~~~~l~~la~~~-----------~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          22 PVDLVVFSSKE----GCQY-CEVTKQLLEELSELS-----------DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             CeEEEEEeCCC----CCCC-hHHHHHHHHHHHHhc-----------CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCC
Confidence            44688999999    8999 899999999998653           3588999999999999999999999999999864


Q ss_pred             CCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          148 AKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                       +..    ... .+.|..+.+++.+||.....
T Consensus        86 -~~~----~~~-~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          86 -GKD----GGI-RYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             -eec----ceE-EEEecCchHHHHHHHHHHHh
Confidence             221    111 23455667889999887654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.19  E-value=1.6e-10  Score=99.10  Aligned_cols=99  Identities=13%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--cchHh
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--QSSFA  131 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--~~lf~  131 (347)
                      ..|++.+   ..  +-.++|.|||+    ||++ |+.+.|.++++++.|.          +++.|+.+|+++.  +++.+
T Consensus        11 ~~~~~a~---~~--gk~vvV~F~A~----WC~~-C~~~~p~l~~l~~~~~----------~~~~~v~v~vd~~~~~~~~~   70 (142)
T cd02950          11 TPPEVAL---SN--GKPTLVEFYAD----WCTV-CQEMAPDVAKLKQKYG----------DQVNFVMLNVDNPKWLPEID   70 (142)
T ss_pred             CCHHHHH---hC--CCEEEEEEECC----cCHH-HHHhHHHHHHHHHHhc----------cCeeEEEEEcCCcccHHHHH
Confidence            3456554   22  33699999999    8999 8999999999998872          3467788888764  48899


Q ss_pred             HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +|+++++|++++|.++ |+..      ....|..+.+++.++|.+...
T Consensus        71 ~~~V~~iPt~v~~~~~-G~~v------~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          71 RYRVDGIPHFVFLDRE-GNEE------GQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             HcCCCCCCEEEEECCC-CCEE------EEEeCCCCHHHHHHHHHHHHc
Confidence            9999999999999653 4432      334456678889999988765

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.16  E-value=1.7e-10  Score=92.27  Aligned_cols=89  Identities=25%  Similarity=0.400  Sum_probs=72.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCC--CCceEEEEc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVN--SLPHIRLVG  145 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~--svP~l~~fp  145 (347)
                      +..++++|+++    ||++ |+++.|.++++|+.|          ++++.|+.+|.++++++.+++|++  ++|++.++.
T Consensus        12 ~~~~~~~f~~~----~~~~-~~~~~~~~~~vA~~~----------~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~   76 (103)
T cd02982          12 GKPLLVLFYNK----DDSE-SEELRERFKEVAKKF----------KGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIIN   76 (103)
T ss_pred             CCCEEEEEEcC----Chhh-HHHHHHHHHHHHHHh----------CCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEe
Confidence            44689999998    8999 899999999999998          257999999999999999999999  999999999


Q ss_pred             CCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .++|..      +....+..+.+++.+|+++.
T Consensus        77 ~~~~~k------~~~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          77 LSDGKK------YLMPEEELTAESLEEFVEDF  102 (103)
T ss_pred             cccccc------cCCCccccCHHHHHHHHHhh
Confidence            742221      11112235899999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.15  E-value=1.3e-10  Score=92.60  Aligned_cols=85  Identities=16%  Similarity=0.287  Sum_probs=70.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      +-.++++|+++    ||+. |+.+.|.++.+++.+          ++++.|.++|.++.+++.++++++++|++++|++ 
T Consensus        13 ~~~vlv~f~a~----~C~~-C~~~~~~l~~l~~~~----------~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~-   76 (97)
T cd02949          13 DRLILVLYTSP----TCGP-CRTLKPILNKVIDEF----------DGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKD-   76 (97)
T ss_pred             CCeEEEEEECC----CChh-HHHHHHHHHHHHHHh----------CCceEEEEEECCCCHHHHHHCCCeeccEEEEEEC-
Confidence            34789999998    8999 899999999999876          2369999999999999999999999999999975 


Q ss_pred             CCCCCCccccccccccccCHHHHHHHHH
Q 048343          148 AKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                       |+..      ....+..+.+++.+|++
T Consensus        77 -g~~v------~~~~g~~~~~~~~~~l~   97 (97)
T cd02949          77 -KELV------KEISGVKMKSEYREFIE   97 (97)
T ss_pred             -CeEE------EEEeCCccHHHHHHhhC
Confidence             3332      34455677888888763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.14  E-value=2.6e-10  Score=114.26  Aligned_cols=113  Identities=14%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|.+|+.++|++.+  .+.  +..++|+|+|+    ||++ |+++.|.++++|+.+...       .+++.|+++|+++
T Consensus       346 ~~v~~l~~~~f~~~v--~~~--~~~vlv~f~a~----wC~~-C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~  409 (462)
T TIGR01130       346 GPVKVLVGKNFDEIV--LDE--TKDVLVEFYAP----WCGH-CKNLAPIYEELAEKYKDA-------ESDVVIAKMDATA  409 (462)
T ss_pred             CccEEeeCcCHHHHh--ccC--CCeEEEEEECC----CCHh-HHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCC
Confidence            468899999999997  233  45799999999    8999 899999999999987421       2379999999997


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +. +.. ++++++|++++|+++. ..     ....+.+.++.++|.+||.+....++
T Consensus       410 n~-~~~-~~i~~~Pt~~~~~~~~-~~-----~~~~~~g~~~~~~l~~~l~~~~~~~~  458 (462)
T TIGR01130       410 ND-VPP-FEVEGFPTIKFVPAGK-KS-----EPVPYDGDRTLEDFSKFIAKHATFPL  458 (462)
T ss_pred             Cc-cCC-CCccccCEEEEEeCCC-Cc-----CceEecCcCCHHHHHHHHHhcCCCCC
Confidence            65 333 9999999999999753 21     12345677899999999999887654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.11  E-value=1.9e-10  Score=107.80  Aligned_cols=110  Identities=15%  Similarity=0.251  Sum_probs=93.7

Q ss_pred             cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343           51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF  130 (347)
Q Consensus        51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf  130 (347)
                      ++.+|.+.++   +.  +..++|-|||.    ||+- .+.++|.|++.|..+.+.+|+     +++.+++||++.+..+.
T Consensus         1 lt~~N~~~il---~s--~elvfv~FyAd----WCrF-Sq~L~piF~EAa~~~~~e~P~-----~kvvwg~VDcd~e~~ia   65 (375)
T KOG0912|consen    1 LTSENIDSIL---DS--NELVFVNFYAD----WCRF-SQMLKPIFEEAAAKFKQEFPE-----GKVVWGKVDCDKEDDIA   65 (375)
T ss_pred             CccccHHHhh---cc--ceEEeeeeehh----hchH-HHHHhHHHHHHHHHHHHhCCC-----cceEEEEcccchhhHHh
Confidence            4668888887   33  44788999999    8999 899999999999999888863     58999999999999999


Q ss_pred             hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          131 ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       131 ~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      .+|.|+.+||+.+|..|  ...     -..|.+.|+++.+.+||++.....+
T Consensus        66 ~ky~I~KyPTlKvfrnG--~~~-----~rEYRg~RsVeaL~efi~kq~s~~i  110 (375)
T KOG0912|consen   66 DKYHINKYPTLKVFRNG--EMM-----KREYRGQRSVEALIEFIEKQLSDPI  110 (375)
T ss_pred             hhhccccCceeeeeecc--chh-----hhhhccchhHHHHHHHHHHHhccHH
Confidence            99999999999999964  331     0356788999999999999988644

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.11  E-value=1.5e-10  Score=108.35  Aligned_cols=113  Identities=13%  Similarity=0.061  Sum_probs=88.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..|-.|++ .|++.-      .+--.+|.|+||    ||.+ |+.++|.|.+|.-+...       .+.++..+++|.+.
T Consensus        28 t~VeDLdd-kFkdnk------dddiW~VdFYAP----WC~H-CKkLePiWdeVG~elkd-------ig~PikVGKlDaT~   88 (468)
T KOG4277|consen   28 TAVEDLDD-KFKDNK------DDDIWFVDFYAP----WCAH-CKKLEPIWDEVGHELKD-------IGLPIKVGKLDATR   88 (468)
T ss_pred             hhhhhhhH-Hhhhcc------cCCeEEEEeech----hhhh-cccccchhHHhCcchhh-------cCCceeeccccccc
Confidence            34555544 455441      234678999999    8999 89999999999877632       24579999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPL  190 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~  190 (347)
                      -+.++.+|||+++||+.+|+.   .+.      ..|.|+|+.+++.+|..+-.+    +|.+|.|
T Consensus        89 f~aiAnefgiqGYPTIk~~kg---d~a------~dYRG~R~Kd~iieFAhR~a~----aiI~pi~  140 (468)
T KOG4277|consen   89 FPAIANEFGIQGYPTIKFFKG---DHA------IDYRGGREKDAIIEFAHRCAA----AIIEPIN  140 (468)
T ss_pred             chhhHhhhccCCCceEEEecC---Cee------eecCCCccHHHHHHHHHhccc----ceeeecC
Confidence            999999999999999999984   332      567889999999999877655    5556665

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.10  E-value=4.7e-10  Score=86.02  Aligned_cols=92  Identities=14%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF  133 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~  133 (347)
                      ++|++.+   +..  ..++|.||++    ||+. |+++.|.++++++.    +       +++.|+.+|+++++++++++
T Consensus         1 ~~~~~~~---~~~--~~~ll~~~~~----~C~~-C~~~~~~~~~~~~~----~-------~~~~~~~i~~~~~~~~~~~~   59 (93)
T cd02947           1 EEFEELI---KSA--KPVVVDFWAP----WCGP-CKAIAPVLEELAEE----Y-------PKVKFVKVDVDENPELAEEY   59 (93)
T ss_pred             CchHHHH---hcC--CcEEEEEECC----CChh-HHHhhHHHHHHHHH----C-------CCceEEEEECCCChhHHHhc
Confidence            3577776   332  4689999998    8999 89999999999876    1       36899999999999999999


Q ss_pred             CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       134 ~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++++|++++|+.+  +.      ...+.+..+.+++.+||
T Consensus        60 ~v~~~P~~~~~~~g--~~------~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          60 GVRSIPTFLFFKNG--KE------VDRVVGADPKEELEEFL   92 (93)
T ss_pred             CcccccEEEEEECC--EE------EEEEecCCCHHHHHHHh
Confidence            99999999999864  22      13334456678888876

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.10  E-value=3.2e-10  Score=94.40  Aligned_cols=82  Identities=10%  Similarity=0.024  Sum_probs=63.7

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecC---CCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAH---QLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--  126 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~---~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--  126 (347)
                      +.++|++.+   ...++-.++|.|+|+   .-+.||++ |+.++|.++++++.+          ++++.|+++|+++.  
T Consensus         8 ~~~~f~~~i---~~~~~~~vvV~F~A~~~~~~~~WC~p-Cr~~~P~l~~l~~~~----------~~~v~fv~Vdvd~~~~   73 (119)
T cd02952           8 GYEEFLKLL---KSHEGKPIFILFYGDKDPDGQSWCPD-CVKAEPVVREALKAA----------PEDCVFIYCDVGDRPY   73 (119)
T ss_pred             CHHHHHHHH---HhcCCCeEEEEEEccCCCCCCCCCHh-HHhhchhHHHHHHHC----------CCCCEEEEEEcCCccc
Confidence            446777777   322344799999991   11129999 899999999999876          23588999999873  


Q ss_pred             -----cchHhHcCCC-CCceEEEEcCC
Q 048343          127 -----QSSFALFAVN-SLPHIRLVGPD  147 (347)
Q Consensus       127 -----~~lf~~~~I~-svP~l~~fpp~  147 (347)
                           .++.++++|+ ++||+++|..+
T Consensus        74 w~d~~~~~~~~~~I~~~iPT~~~~~~~  100 (119)
T cd02952          74 WRDPNNPFRTDPKLTTGVPTLLRWKTP  100 (119)
T ss_pred             ccCcchhhHhccCcccCCCEEEEEcCC
Confidence                 5899999999 99999999754

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00051 thioredoxin; Provisional

Probab=99.09  E-value=3.5e-10  Score=89.69  Aligned_cols=79  Identities=11%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             eEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |.++++ ++|++.+   +.  +..+++.|+++    ||++ |+.+.|.++++++++           .++.|+.+|.+++
T Consensus         2 v~~i~~~~~~~~~~---~~--~~~vli~f~~~----~C~~-C~~~~~~l~~l~~~~-----------~~~~~~~vd~~~~   60 (98)
T PTZ00051          2 VHIVTSQAEFESTL---SQ--NELVIVDFYAE----WCGP-CKRIAPFYEECSKEY-----------TKMVFVKVDVDEL   60 (98)
T ss_pred             eEEecCHHHHHHHH---hc--CCeEEEEEECC----CCHH-HHHHhHHHHHHHHHc-----------CCcEEEEEECcch
Confidence            445554 5788876   32  45799999999    8999 899999999999854           2489999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCC
Q 048343          127 QSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~  147 (347)
                      +++.++|+++++|++++|+.|
T Consensus        61 ~~~~~~~~v~~~Pt~~~~~~g   81 (98)
T PTZ00051         61 SEVAEKENITSMPTFKVFKNG   81 (98)
T ss_pred             HHHHHHCCCceeeEEEEEeCC
Confidence            999999999999999999753

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.09  E-value=6e-10  Score=93.16  Aligned_cols=100  Identities=11%  Similarity=0.064  Sum_probs=71.6

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .++++++.+++++.+   ++  +...+|+|+++    ||++ |+.+.|.++++++..            ++-|+.+|+++
T Consensus         6 ~~~~~it~~~~~~~i---~~--~~~~iv~f~~~----~Cp~-C~~~~P~l~~~~~~~------------~~~~y~vdvd~   63 (122)
T TIGR01295         6 KGLEVTTVVRALEAL---DK--KETATFFIGRK----TCPY-CRKFSGTLSGVVAQT------------KAPIYYIDSEN   63 (122)
T ss_pred             ccceecCHHHHHHHH---Hc--CCcEEEEEECC----CChh-HHHHhHHHHHHHHhc------------CCcEEEEECCC
Confidence            368899999999998   32  22589999999    8999 899999999999862            23455666653


Q ss_pred             Cc-----------chHhHcC----CCCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHH
Q 048343          126 SQ-----------SSFALFA----VNSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQ  175 (347)
Q Consensus       126 ~~-----------~lf~~~~----I~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~  175 (347)
                      ++           ++.++++    +.++||+++|+.|  +..      ....| ..++++|.+|+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G--k~v------~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        64 NGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG--KQV------SVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             ccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC--eEE------EEEeCCCCCHHHHHHHhh
Confidence            32           4446655    5559999999964  332      22333 456899988864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.06  E-value=8.3e-10  Score=84.50  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                      |..|+++    ||++ |+++.|.++++|+.+          +.++.+.++|.++++++.+++|++++|++++  .  |. 
T Consensus         3 v~~f~~~----~C~~-C~~~~~~l~~l~~~~----------~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~--g~-   62 (82)
T TIGR00411         3 IELFTSP----TCPY-CPAAKRVVEEVAKEM----------GDAVEVEYINVMENPQKAMEYGIMAVPAIVI--N--GD-   62 (82)
T ss_pred             EEEEECC----CCcc-hHHHHHHHHHHHHHh----------cCceEEEEEeCccCHHHHHHcCCccCCEEEE--C--CE-
Confidence            5689998    8999 899999999999876          2358999999999999999999999999986  2  22 


Q ss_pred             CCccccccccccccCHHHHHHHHHhh
Q 048343          152 KDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                             ..+.|..+.+++.+++.+.
T Consensus        63 -------~~~~G~~~~~~l~~~l~~~   81 (82)
T TIGR00411        63 -------VEFIGAPTKEELVEAIKKR   81 (82)
T ss_pred             -------EEEecCCCHHHHHHHHHhh
Confidence                   1234556788999988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=2.3e-10  Score=115.14  Aligned_cols=88  Identities=16%  Similarity=0.181  Sum_probs=74.7

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +|+|++|+.++|+..+   .++| ..-+|.|+++    ||++ |+.|+|.|+++|+...+=       ..-|..+.||+.
T Consensus        38 ~D~ii~Ld~~tf~~~v---~~~~-~~~lVEFy~s----wCGh-Cr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA  101 (606)
T KOG1731|consen   38 DDPIIELDVDTFNAAV---FGSR-KAKLVEFYNS----WCGH-CRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCA  101 (606)
T ss_pred             CCCeEEeehhhhHHHh---cccc-hhHHHHHHHh----hhhh-hhhcchHHHHHHHHHhcc-------cceeEEEEeecc
Confidence            4789999999999998   4555 3467899998    9999 899999999999875321       235899999998


Q ss_pred             C--CcchHhHcCCCCCceEEEEcCCC
Q 048343          125 E--SQSSFALFAVNSLPHIRLVGPDA  148 (347)
Q Consensus       125 ~--~~~lf~~~~I~svP~l~~fpp~~  148 (347)
                      +  |.+++++++|++.|++.+|||+.
T Consensus       102 ~~~N~~lCRef~V~~~Ptlryf~~~~  127 (606)
T KOG1731|consen  102 DEENVKLCREFSVSGYPTLRYFPPDS  127 (606)
T ss_pred             chhhhhhHhhcCCCCCceeeecCCcc
Confidence            6  67999999999999999999963

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.96  E-value=9.4e-10  Score=100.55  Aligned_cols=110  Identities=11%  Similarity=0.103  Sum_probs=77.7

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      +.+-..+.|.+-+   ++  + ..++.|++++ ..||++ |+.+.|.++++|+.+-         +-++.++++|.++++
T Consensus         5 ~~~~~~~~~~~~~---~~--~-~~i~~f~~~~-a~wC~~-C~~~~p~l~~la~~~~---------~~~i~~v~vd~~~~~   67 (215)
T TIGR02187         5 DREILKELFLKEL---KN--P-VEIVVFTDND-KEGCQY-CKETEQLLEELSEVSP---------KLKLEIYDFDTPEDK   67 (215)
T ss_pred             HHHHHHHHHHHhc---CC--C-eEEEEEcCCC-CCCCCc-hHHHHHHHHHHHhhCC---------CceEEEEecCCcccH
Confidence            3444555644443   33  2 3466687721 129999 8999999999998761         124778888888999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      ++.++|+|.++||+++|..|  +..     -.++.|..+.+++.+||.+.++.+
T Consensus        68 ~l~~~~~V~~~Pt~~~f~~g--~~~-----~~~~~G~~~~~~l~~~i~~~~~~~  114 (215)
T TIGR02187        68 EEAEKYGVERVPTTIILEEG--KDG-----GIRYTGIPAGYEFAALIEDIVRVS  114 (215)
T ss_pred             HHHHHcCCCccCEEEEEeCC--eee-----EEEEeecCCHHHHHHHHHHHHHhc
Confidence            99999999999999999864  221     023445566788889998886643

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.94  E-value=3.3e-09  Score=88.23  Aligned_cols=90  Identities=9%  Similarity=0.186  Sum_probs=69.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHH---HHHHHhhhcCCCCCCCCCceEEEEEEccCC-------------cchHhH
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFS---LVASSFIANNVDNPSSRGKLFFCYLEFKES-------------QSSFAL  132 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe---~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-------------~~lf~~  132 (347)
                      ..++|.|+|+    ||++ |+.++|++.   .+++.+.          +++.+.++|+++.             +++.++
T Consensus        15 k~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~   79 (125)
T cd02951          15 KPLLLLFSQP----GCPY-CDKLKRDYLNDPAVQAYIR----------AHFVVVYINIDGDKEVTDFDGEALSEKELARK   79 (125)
T ss_pred             CcEEEEEeCC----CCHH-HHHHHHHhcCcHHHHHHHH----------hheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence            3699999999    8999 899999985   4555542          3578999999864             578999


Q ss_pred             cCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          133 FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       133 ~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      |+++++|++++|.++.|+..      ....|..+.+++.++|+...+
T Consensus        80 ~~v~~~Pt~~~~~~~gg~~~------~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          80 YRVRFTPTVIFLDPEGGKEI------ARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             cCCccccEEEEEcCCCCcee------EEecCCCCHHHHHHHHHHHHh
Confidence            99999999999998523332      334555677888888877654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=7.1e-09  Score=102.74  Aligned_cols=110  Identities=21%  Similarity=0.253  Sum_probs=88.7

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +...+++..+|....  ...  +...+|+|+|+    ||++ |+.+.|+|+++|+.+          .+++.++.+|.++
T Consensus        29 ~~~~~~~~~~~~~~~--~~~--~~~~~v~fyap----wc~~-c~~l~~~~~~~~~~l----------~~~~~~~~vd~~~   89 (383)
T KOG0191|consen   29 GVVSELTLDSFFDFL--LKD--DSPWLVEFYAP----WCGH-CKKLAPTYKKLAKAL----------KGKVKIGAVDCDE   89 (383)
T ss_pred             cchhhhhccccHHHh--hcc--CCceEEEEECC----CCcc-hhhhchHHHHHHHHh----------cCceEEEEeCchh
Confidence            345666666666665  133  44788999999    8999 899999999999887          2379999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++++++++++++.||+.+|.|+ .+.       ..+.+.++++.+++|+.+.....+
T Consensus        90 ~~~~~~~y~i~gfPtl~~f~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  138 (383)
T KOG0191|consen   90 HKDLCEKYGIQGFPTLKVFRPG-KKP-------IDYSGPRNAESLAEFLIKELEPSV  138 (383)
T ss_pred             hHHHHHhcCCccCcEEEEEcCC-Cce-------eeccCcccHHHHHHHHHHhhcccc
Confidence            9999999999999999999986 222       344557889999999988877665

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=7.8e-09  Score=102.43  Aligned_cols=112  Identities=16%  Similarity=0.188  Sum_probs=93.6

Q ss_pred             CC-eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AG-VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~-VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .+ +.+++++||++.+  .+.  +-..+|.|+||    ||++ |+.++|+|+++|+....        +..+-.+++|.+
T Consensus       143 ~~~v~~l~~~~~~~~~--~~~--~~~~lv~f~aP----wc~~-ck~l~~~~~~~a~~~~~--------~~~v~~~~~d~~  205 (383)
T KOG0191|consen  143 EGEVFELTKDNFDETV--KDS--DADWLVEFYAP----WCGH-CKKLAPEWEKLAKLLKS--------KENVELGKIDAT  205 (383)
T ss_pred             CCceEEccccchhhhh--hcc--CcceEEEEecc----ccHH-hhhcChHHHHHHHHhcc--------CcceEEEeeccc
Confidence            45 9999999999987  233  34678899999    8999 89999999999997732        357999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      ....+.++++++..|++.+|+++. +.      .+.+++.|+.+.+.+|+++..+.+
T Consensus       206 ~~~~~~~~~~v~~~Pt~~~f~~~~-~~------~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  206 VHKSLASRLEVRGYPTLKLFPPGE-ED------IYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             hHHHHhhhhcccCCceEEEecCCC-cc------cccccccccHHHHHHHHHhhcCCC
Confidence            888999999999999999999864 21      134566799999999999988874

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.81  E-value=2.7e-08  Score=101.64  Aligned_cols=139  Identities=12%  Similarity=0.018  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhcCCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhh
Q 048343            8 NHLILYFAAIIILLVSLSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELH   87 (347)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~c   87 (347)
                      ++++|+|+.+.+++++.+...+..+ ..++ +..+  .-.-+.+.|.+=+.+.  .+  ++..++|.|||+    ||++ 
T Consensus         4 ~~~~~~~~~~~~~~~~s~c~~~~~~-~~~~-~~~~--~lP~f~l~D~dG~~v~--ls--kGKpVvV~FWAT----WCpp-   70 (521)
T PRK14018          4 RTFFSLCAKFGCLLALGACSPKILD-AGTA-TVPH--TLSTLKTADNRPASVY--LK--KDKPTLIKFWAS----WCPL-   70 (521)
T ss_pred             hHHHHHHHHHHHHHhhcccccccCc-cccc-cccC--CCCCeEeecCCCceee--cc--CCCEEEEEEEcC----CCHH-
Confidence            5667776666665555433322221 1221 1111  1123444444444443  22  455899999999    8999 


Q ss_pred             cccchHHHHHHHHHhhhcCCCCCCCCCceEE----------------------------EEEEccCCcchHhHcCCCCCc
Q 048343           88 LQELRNEFSLVASSFIANNVDNPSSRGKLFF----------------------------CYLEFKESQSSFALFAVNSLP  139 (347)
Q Consensus        88 C~~l~pefe~vA~s~~~~~p~~~~~~~~v~F----------------------------~~vD~~~~~~lf~~~~I~svP  139 (347)
                      |+...|+++++++.+..+         ++.|                            ..+++|++.++.+.|+++++|
T Consensus        71 Ck~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giP  141 (521)
T PRK14018         71 CLSELGETEKWAQDAKFS---------SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYP  141 (521)
T ss_pred             HHHHHHHHHHHHHHhccC---------CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcC
Confidence            899999999999987421         1111                            245666777899999999999


Q ss_pred             eEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +.+++-++ |+..      ....|..+.++|.++|+
T Consensus       142 Tt~IIDkd-GkIV------~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        142 SWAIIGKD-GDVQ------RIVKGSISEAQALALIR  170 (521)
T ss_pred             eEEEEcCC-CeEE------EEEeCCCCHHHHHHHHH
Confidence            99888654 4543      44456677888888887

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.80  E-value=4.8e-08  Score=89.29  Aligned_cols=97  Identities=14%  Similarity=0.011  Sum_probs=73.9

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS  128 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~  128 (347)
                      -.+++++.+.+-. .++   -..++.|||+    ||++ |+.+.|.+++++...           +++.|.++|.+++++
T Consensus       118 ~~L~~~~~~~l~~-~~~---pv~I~~F~a~----~C~~-C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~~~  177 (215)
T TIGR02187       118 PGLSEKTVELLQS-LDE---PVRIEVFVTP----TCPY-CPYAVLMAHKFALAN-----------DKILGEMIEANENPD  177 (215)
T ss_pred             CCCCHHHHHHHHh-cCC---CcEEEEEECC----CCCC-cHHHHHHHHHHHHhc-----------CceEEEEEeCCCCHH
Confidence            4777777776641 122   2456669998    8999 899999888887542           368899999999999


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      +.++++++++|+++++..+  .         .+.|..+.+++.+|+.+
T Consensus       178 ~~~~~~V~~vPtl~i~~~~--~---------~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       178 LAEKYGVMSVPKIVINKGV--E---------EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             HHHHhCCccCCEEEEecCC--E---------EEECCCCHHHHHHHHHh
Confidence            9999999999999998632  1         13455678889998864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.79  E-value=5.3e-08  Score=82.29  Aligned_cols=110  Identities=6%  Similarity=0.041  Sum_probs=87.1

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |.-.++.++.++++   .+++  ..+| |-+.+|.. ++- +.+..=..+++|++|.         ++++.|+++|+|++
T Consensus        18 g~~~~~~~~~~~~~---~~~~--~~vl-~~~gdp~r-~~E-~~D~avvleELa~e~~---------~~~v~~akVDiD~~   80 (132)
T PRK11509         18 GWTPVSESRLDDWL---TQAP--DGVV-LLSSDPKR-TPE-VSDNPVMIGELLREFP---------DYTWQVAIADLEQS   80 (132)
T ss_pred             CCCccccccHHHHH---hCCC--cEEE-EeCCCCCc-CCc-cccHHHHHHHHHHHhc---------CCceEEEEEECCCC
Confidence            67788999999998   4433  3444 44556664 667 6999999999999982         24699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +++.++|||+++|++++|+.|  +..      ....|..+.+++.+||++.+...
T Consensus        81 ~~LA~~fgV~siPTLl~FkdG--k~v------~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         81 EAIGDRFGVFRFPATLVFTGG--NYR------GVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             HHHHHHcCCccCCEEEEEECC--EEE------EEEeCcCCHHHHHHHHHHHhcCc
Confidence            999999999999999999974  332      44456788999999999987753

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.76  E-value=1e-08  Score=84.98  Aligned_cols=68  Identities=10%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-chHhHcCCCC--CceEEEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-SSFALFAVNS--LPHIRLV  144 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-~lf~~~~I~s--vP~l~~f  144 (347)
                      +..++|.|+|+    ||++ |+.++|.+++.++....          +.-|+.+|+++++ ...+++++.+  +|++++|
T Consensus        19 ~kpVlV~F~a~----WC~~-C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~   83 (117)
T cd02959          19 GKPLMLLIHKT----WCGA-CKALKPKFAESKEISEL----------SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFL   83 (117)
T ss_pred             CCcEEEEEeCC----cCHH-HHHHHHHHhhhHHHHhh----------cCcEEEEEecCCCCchhhhcccCCCccceEEEE
Confidence            45799999999    8999 89999999998775421          2235566776554 4567899987  9999999


Q ss_pred             cCCCCCC
Q 048343          145 GPDAKSL  151 (347)
Q Consensus       145 pp~~g~~  151 (347)
                      .|+ |+.
T Consensus        84 ~~~-Gk~   89 (117)
T cd02959          84 DPS-GDV   89 (117)
T ss_pred             CCC-CCC
Confidence            875 554

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.76  E-value=3e-08  Score=103.14  Aligned_cols=108  Identities=9%  Similarity=0.032  Sum_probs=77.7

Q ss_pred             eEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           48 VIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        48 VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      ..+++ .+++++.+. ....++..++|+|||+    ||++ |++++|+.   +++++.+           +++.+.++|+
T Consensus       454 ~~~i~s~~~l~~~l~-~a~~~gK~VlVdF~A~----WC~~-Ck~~e~~~~~~~~v~~~l-----------~~~~~v~vDv  516 (571)
T PRK00293        454 FQRIKTVAELDQALA-EAKGKGKPVMLDLYAD----WCVA-CKEFEKYTFSDPQVQQAL-----------ADTVLLQADV  516 (571)
T ss_pred             ceecCCHHHHHHHHH-HHHhcCCcEEEEEECC----cCHh-HHHHHHHhcCCHHHHHHh-----------cCCEEEEEEC
Confidence            44553 467777662 1112345799999999    8999 89999875   5666544           2478999999


Q ss_pred             cCC----cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          124 KES----QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       124 ~~~----~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++    +++.++++++++|++++|+++ |++.    ...+..+..+++++.+++++.
T Consensus       517 t~~~~~~~~l~~~~~v~g~Pt~~~~~~~-G~~i----~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        517 TANNAEDVALLKHYNVLGLPTILFFDAQ-GQEI----PDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCChhhHHHHHHcCCCCCCEEEEECCC-CCCc----ccccccCCCCHHHHHHHHHHh
Confidence            864    578999999999999999874 4431    013345567899999999874

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.74  E-value=2.5e-08  Score=73.73  Aligned_cols=56  Identities=13%  Similarity=0.059  Sum_probs=50.0

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~  143 (347)
                      +++|+++    ||++ |++++|.+++++.+.           +++-|.++|+++++++.+++|+.++|++++
T Consensus         3 v~~f~~~----~C~~-C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           3 IEVFVSP----TCPY-CPDAVQAANRIAALN-----------PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEECC----CCCC-cHHHHHHHHHHHHhC-----------CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            6789998    8999 899999999998642           368999999999999999999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PTZ00062 glutaredoxin; Provisional

Probab=98.61  E-value=1.9e-07  Score=84.86  Aligned_cols=91  Identities=10%  Similarity=0.176  Sum_probs=68.5

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA  131 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~  131 (347)
                      +.+.|++++   ++.+ -.+|++|+|+    ||++ |+.+.|.++++|+.|           .++.|++||.+       
T Consensus         5 ~~ee~~~~i---~~~~-g~~vl~f~a~----w~~~-C~~m~~vl~~l~~~~-----------~~~~F~~V~~d-------   57 (204)
T PTZ00062          5 KKEEKDKLI---ESNT-GKLVLYVKSS----KEPE-YEQLMDVCNALVEDF-----------PSLEFYVVNLA-------   57 (204)
T ss_pred             CHHHHHHHH---hcCC-CcEEEEEeCC----CCcc-hHHHHHHHHHHHHHC-----------CCcEEEEEccc-------
Confidence            456788876   3211 2588999999    8999 899999999999876           25999999987       


Q ss_pred             HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                       ++|.++|++++|..|  +..      ++.+| -++.++.+++++..+
T Consensus        58 -~~V~~vPtfv~~~~g--~~i------~r~~G-~~~~~~~~~~~~~~~   95 (204)
T PTZ00062         58 -DANNEYGVFEFYQNS--QLI------NSLEG-CNTSTLVSFIRGWAQ   95 (204)
T ss_pred             -cCcccceEEEEEECC--EEE------eeeeC-CCHHHHHHHHHHHcC
Confidence             999999999999864  332      33333 346667777766655

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.59  E-value=2e-08  Score=91.34  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=90.9

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..++.+|++|+++++   +|    ..+++|.|+    ||+- |+.+.|+++..|. |..        +=.|-.+++|+..
T Consensus        24 s~~~~~~eenw~~~l---~g----ewmi~~~ap----~~ps-c~~~~~~~~~~a~-~s~--------dL~v~va~VDvt~   82 (248)
T KOG0913|consen   24 SKLTRIDEENWKELL---TG----EWMIEFGAP----WCPS-CSDLIPHLENFAT-VSL--------DLGVKVAKVDVTT   82 (248)
T ss_pred             ceeEEecccchhhhh---ch----HHHHHhcCC----CCcc-ccchHHHHhccCC-ccC--------CCceeEEEEEEEe
Confidence            379999999999997   44    367889999    8999 8999999998874 322        3469999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++.+..+|-+...|+|+|.++|  +       +.+|.++|+..++.+|+..+--..+
T Consensus        83 npgLsGRF~vtaLptIYHvkDG--e-------FrrysgaRdk~dfisf~~~r~w~~i  130 (248)
T KOG0913|consen   83 NPGLSGRFLVTALPTIYHVKDG--E-------FRRYSGARDKNDFISFEEHREWQSI  130 (248)
T ss_pred             ccccceeeEEEecceEEEeecc--c-------cccccCcccchhHHHHHHhhhhhcc
Confidence            9999999999999999999874  2       4688899999999999988765444

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.53  E-value=9.4e-07  Score=76.80  Aligned_cols=87  Identities=13%  Similarity=0.076  Sum_probs=58.4

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------CcchH-hHc---CC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------SQSSF-ALF---AV  135 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------~~~lf-~~~---~I  135 (347)
                      +.+|.|||+    ||++ |++..|+++++++.|.          -++....+|-+.          ..+.. +.+   ++
T Consensus        52 ~~lvnFWAs----WCpp-Cr~e~P~L~~l~~~~~----------~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v  116 (153)
T TIGR02738        52 YALVFFYQS----TCPY-CHQFAPVLKRFSQQFG----------LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP  116 (153)
T ss_pred             CEEEEEECC----CChh-HHHHHHHHHHHHHHcC----------CcEEEEEeCCCcccccccccCCchHHHHHHhccCCC
Confidence            459999999    8999 8999999999998761          234444444221          12333 345   89


Q ss_pred             CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          136 NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       136 ~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .++|+.+++.+. |...     .....|..+.+++.+.+.+.
T Consensus       117 ~~iPTt~LID~~-G~~i-----~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       117 VVTPATFLVNVN-TRKA-----YPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCCeEEEEeCC-CCEE-----EEEeecccCHHHHHHHHHHh
Confidence            999999999875 3321     12334567788887777653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.53  E-value=6.7e-07  Score=78.02  Aligned_cols=88  Identities=8%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc----------------------CC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK----------------------ES  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~----------------------~~  126 (347)
                      ..++|.|||+    ||+. |+...|.+.++++++.+         .++.+..++.+                      ++
T Consensus        62 k~~~l~f~a~----~C~~-C~~~~~~l~~~~~~~~~---------~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~  127 (173)
T PRK03147         62 KGVFLNFWGT----WCKP-CEKEMPYMNELYPKYKE---------KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKG  127 (173)
T ss_pred             CEEEEEEECC----cCHH-HHHHHHHHHHHHHHhhc---------CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCc
Confidence            3588999998    8999 89999999999998842         23555555554                      34


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .++.+.++++++|+.+++.++ |+..      ..+.+..+.+++.+++++.
T Consensus       128 ~~~~~~~~v~~~P~~~lid~~-g~i~------~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        128 RQVIDAYGVGPLPTTFLIDKD-GKVV------KVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             chHHHHcCCCCcCeEEEECCC-CcEE------EEEeCCCCHHHHHHHHHHh
Confidence            678899999999999999875 4432      3445667888898888753

>TIGR02740 TraF-like TraF-like protein

Probab=98.50  E-value=4.8e-07  Score=85.72  Aligned_cols=90  Identities=12%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------CcchHhHcCCCCCc
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------SQSSFALFAVNSLP  139 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------~~~lf~~~~I~svP  139 (347)
                      .+++|.|+|+    ||++ |+.+.|.++.+++.|          +-.+.++.+|-+.         ++++.+++||+++|
T Consensus       167 k~~Lv~F~As----wCp~-C~~~~P~L~~la~~y----------g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vP  231 (271)
T TIGR02740       167 KSGLFFFFKS----DCPY-CHQQAPILQAFEDRY----------GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVP  231 (271)
T ss_pred             CeEEEEEECC----CCcc-HHHHhHHHHHHHHHc----------CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCC
Confidence            3689999999    8999 899999999999886          1245555555432         34689999999999


Q ss_pred             eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++.++.+...      ....|..+.++|.+.+...+.
T Consensus       232 tl~Lv~~~~~~v~------~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       232 AVFLADPDPNQFT------PIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             eEEEEECCCCEEE------EEEeCCCCHHHHHHHHHHHhc
Confidence            9999998423221      222345678888888765544

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PHA02125 thioredoxin-like protein

Probab=98.46  E-value=2.5e-07  Score=70.40  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=44.0

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIR  142 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~  142 (347)
                      ++.|||+    ||++ |+.+.|.+++++                ..|+++|.++++++.++|+++++||++
T Consensus         2 iv~f~a~----wC~~-Ck~~~~~l~~~~----------------~~~~~vd~~~~~~l~~~~~v~~~PT~~   51 (75)
T PHA02125          2 IYLFGAE----WCAN-CKMVKPMLANVE----------------YTYVDVDTDEGVELTAKHHIRSLPTLV   51 (75)
T ss_pred             EEEEECC----CCHh-HHHHHHHHHHHh----------------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence            6899999    8999 899999987542                247899999999999999999999998

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.40  E-value=1.4e-06  Score=72.81  Aligned_cols=72  Identities=10%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------C
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------S  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------~  126 (347)
                      ..++|.|||+    ||++ |++..|+++++++.+....     ++-.+.++.+|-++                      .
T Consensus        19 k~vll~Fwa~----wC~~-C~~~~p~l~~~~~~~~~~~-----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T cd03009          19 KTVGLYFSAS----WCPP-CRAFTPKLVEFYEKLKESG-----KNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERR   88 (131)
T ss_pred             cEEEEEEECC----CChH-HHHHhHHHHHHHHHHHhcC-----CCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHH
Confidence            3699999998    8999 8999999999998875321     01135555555332                      1


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCC
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                      ..+.++|+++++|+++++.++ |+.
T Consensus        89 ~~~~~~~~v~~~P~~~lid~~-G~i  112 (131)
T cd03009          89 SRLNRTFKIEGIPTLIILDAD-GEV  112 (131)
T ss_pred             HHHHHHcCCCCCCEEEEECCC-CCE
Confidence            357889999999999999875 443

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.39  E-value=5.8e-06  Score=68.42  Aligned_cols=112  Identities=21%  Similarity=0.276  Sum_probs=81.0

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..|.+.|++-+|++.+   .  |.-+++|-|...     =|.  .+-+.+|.++|++-.+       ..+++.+|.|-+.
T Consensus         3 ~~G~v~LD~~tFdKvi---~--kf~~~LVKFD~a-----yPy--GeKhd~F~~~A~e~~~-------~~~dLLvAeVGik   63 (126)
T PF07912_consen    3 CKGCVPLDELTFDKVI---P--KFKYVLVKFDVA-----YPY--GEKHDAFKKLAKEASA-------SSDDLLVAEVGIK   63 (126)
T ss_dssp             STTSEEESTTHHHHHG---G--GSSEEEEEEEES-----S----CHHHHHHHHHHHHHHC-------C-SSEEEEEEECB
T ss_pred             cCceeeccceehhhee---c--cCceEEEEEecc-----CCC--cchHHHHHHHHHHHhc-------CCCceEEEEeCcc
Confidence            4689999999999998   2  345899999875     233  6778999999955332       3568999999887


Q ss_pred             C-----CcchHhHcCC--CCCceEEEEcCCCCCCCCcccccccc--ccccCHHHHHHHHHhhcCCCC
Q 048343          125 E-----SQSSFALFAV--NSLPHIRLVGPDAKSLKDDSVQMEQG--DFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       125 ~-----~~~lf~~~~I--~svP~l~~fpp~~g~~~~~~~~~~~~--~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +     |.++.++|++  ++.|.+.+|..+ .+      .+.++  +++.+++.|.+|+++++++.+
T Consensus        64 DYGek~N~~Laery~i~ke~fPv~~LF~~~-~~------~pv~~p~~~~~t~~~l~~fvk~~t~~yi  123 (126)
T PF07912_consen   64 DYGEKENMELAERYKIDKEDFPVIYLFVGD-KE------EPVRYPFDGDVTADNLQRFVKSNTGLYI  123 (126)
T ss_dssp             SSSS-CCHHHHHHTT-SCCC-SEEEEEESS-TT------SEEEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred             cccchhHHHHHHHhCCCcccCCEEEEecCC-CC------CCccCCccCCccHHHHHHHHHhCCCeee
Confidence            5     5699999999  679999999932 22      12333  667899999999999999755

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.38  E-value=4.3e-07  Score=73.59  Aligned_cols=88  Identities=13%  Similarity=0.138  Sum_probs=58.3

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--------------------c
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--------------------Q  127 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--------------------~  127 (347)
                      +.+++++|+++    ||+. |+.+.++.....+ +...      -++++.+..+|+++.                    +
T Consensus         5 ~k~~v~~F~~~----~C~~-C~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (112)
T PF13098_consen    5 GKPIVVVFTDP----WCPY-CKKLEKELFPDND-VARY------LKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNK   72 (112)
T ss_dssp             SSEEEEEEE-T----T-HH-HHHHHHHHHHHHH-HHCE------EHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHH
T ss_pred             CCEEEEEEECC----CCHH-HHHHHHHHHHHHH-HHHH------hhcCeEEEEEecCCcccccccccccccchhhhHHHH
Confidence            34789999998    8999 8999999986543 1111      123577888888753                    3


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      ++.+++|+++.|+++++.+. |+..      ....|..++++|.++|
T Consensus        73 ~l~~~~~v~gtPt~~~~d~~-G~~v------~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   73 ELAQRYGVNGTPTIVFLDKD-GKIV------YRIPGYLSPEELLKML  112 (112)
T ss_dssp             HHHHHTT--SSSEEEECTTT-SCEE------EEEESS--HHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEEcCC-CCEE------EEecCCCCHHHHHhhC
Confidence            58999999999999999753 4432      3345667888888764

...

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.36  E-value=2.3e-06  Score=71.82  Aligned_cols=79  Identities=11%  Similarity=0.120  Sum_probs=57.3

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-HH--HHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-FS--LVASSFIANNVDNPSSRGKLFFCYLEFKESQS  128 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-fe--~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~  128 (347)
                      +++.+++..   +.  +..++|.|+|+    ||+. |+.++++ |.  +|++..          .++..++++|.+++++
T Consensus         4 ~~eal~~Ak---~~--~KpVll~f~a~----WC~~-Ck~me~~~f~~~~V~~~l----------~~~fv~VkvD~~~~~~   63 (124)
T cd02955           4 GEEAFEKAR---RE--DKPIFLSIGYS----TCHW-CHVMEHESFEDEEVAAIL----------NENFVPIKVDREERPD   63 (124)
T ss_pred             CHHHHHHHH---Hc--CCeEEEEEccC----CCHh-HHHHHHHccCCHHHHHHH----------hCCEEEEEEeCCcCcH
Confidence            345555553   33  44799999998    8999 8999874 33  455443          2358899999999887


Q ss_pred             hHh--------HcCCCCCceEEEEcCCCCCC
Q 048343          129 SFA--------LFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       129 lf~--------~~~I~svP~l~~fpp~~g~~  151 (347)
                      +.+        .+++.+.|+++++.|+ |+.
T Consensus        64 ~~~~~~~~~~~~~~~~G~Pt~vfl~~~-G~~   93 (124)
T cd02955          64 VDKIYMNAAQAMTGQGGWPLNVFLTPD-LKP   93 (124)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCC-CCE
Confidence            654        3589999999999986 554

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.34  E-value=3.8e-06  Score=74.78  Aligned_cols=91  Identities=11%  Similarity=0.095  Sum_probs=62.2

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE----------cc-CCcchHhHcCC-
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE----------FK-ESQSSFALFAV-  135 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD----------~~-~~~~lf~~~~I-  135 (347)
                      +|. +|.|||+    ||++ |++..|++++++++|.          -.++-+.+|          .+ ....+.+.|+. 
T Consensus        70 d~~-lV~Fwas----wCp~-C~~e~P~L~~l~~~~g----------~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~  133 (181)
T PRK13728         70 DWK-VVLFMQG----HCPY-CHQFDPVLKQLAQQYG----------FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNI  133 (181)
T ss_pred             Hce-EEEEECC----CCHh-HHHHHHHHHHHHHHcC----------CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCC
Confidence            444 7779998    8999 8999999999998861          123333333          11 12246778995 


Q ss_pred             -CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          136 -NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       136 -~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                       .++|+.+++.++ |...     ...+.|..+.+++.+.+.+.+..
T Consensus       134 ~~~iPttfLId~~-G~i~-----~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        134 PVATPTTFLVNVN-TLEA-----LPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             CCCCCeEEEEeCC-CcEE-----EEEEECCCCHHHHHHHHHHHHhh
Confidence             699999999875 3321     12345667788888888777665

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.28  E-value=9.7e-06  Score=72.34  Aligned_cols=86  Identities=6%  Similarity=-0.066  Sum_probs=57.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-----------------------c
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-----------------------K  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-----------------------~  124 (347)
                      +..++|.|||+    ||++ |++..|+++++++.             ++.+..++.                       |
T Consensus        68 gk~vvv~Fwat----wC~~-C~~e~p~l~~l~~~-------------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D  129 (185)
T PRK15412         68 GKPVLLNVWAT----WCPT-CRAEHQYLNQLSAQ-------------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFD  129 (185)
T ss_pred             CCEEEEEEECC----CCHH-HHHHHHHHHHHHHc-------------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEc
Confidence            34699999998    8999 79999999888642             112222222                       3


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++.++.+.||+.++|+.+++.++ |+..      ..+.+..+.+++.++++...
T Consensus       130 ~~~~~~~~~gv~~~P~t~vid~~-G~i~------~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        130 GDGMLGLDLGVYGAPETFLIDGN-GIIR------YRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CCccHHHhcCCCcCCeEEEECCC-ceEE------EEEecCCCHHHHHHHHHHHH
Confidence            34456678999999988888764 5542      33445566777777666543

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.27  E-value=2.7e-06  Score=75.01  Aligned_cols=100  Identities=9%  Similarity=-0.092  Sum_probs=66.6

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh---h-cCCCCCC------CCCceEEEEEEccCCcchHhHcCCCC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI---A-NNVDNPS------SRGKLFFCYLEFKESQSSFALFAVNS  137 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~---~-~~p~~~~------~~~~v~F~~vD~~~~~~lf~~~~I~s  137 (347)
                      +..++|.||++    ||++ |++..|.++++++.-.   . +..+..+      .+.++-|-.+..|++.++.++|++.+
T Consensus        63 gk~vll~F~a~----wC~~-C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~  137 (173)
T TIGR00385        63 GKPVLLNVWAS----WCPP-CRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG  137 (173)
T ss_pred             CCEEEEEEECC----cCHH-HHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence            34799999998    9999 8999999998876400   0 0000000      01112243456677778999999999


Q ss_pred             CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          138 LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       138 vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +|+.+++.++ |+..      ..+.+..+.+++.+++++..+
T Consensus       138 ~P~~~~id~~-G~i~------~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       138 APETFLVDGN-GVIL------YRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             CCeEEEEcCC-ceEE------EEEeccCCHHHHHHHHHHHhh
Confidence            9988888654 4432      344456788999999988754

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.26  E-value=1.9e-06  Score=65.77  Aligned_cols=53  Identities=9%  Similarity=-0.004  Sum_probs=43.8

Q ss_pred             EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343           73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL  143 (347)
Q Consensus        73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~  143 (347)
                      |.|+|+    ||++ |+.++|.++++++++          +.++-|.++|  + .+...++++.++|++++
T Consensus         3 i~~~a~----~C~~-C~~~~~~~~~~~~e~----------~~~~~~~~v~--~-~~~a~~~~v~~vPti~i   55 (76)
T TIGR00412         3 IQIYGT----GCAN-CQMTEKNVKKAVEEL----------GIDAEFEKVT--D-MNEILEAGVTATPGVAV   55 (76)
T ss_pred             EEEECC----CCcC-HHHHHHHHHHHHHHc----------CCCeEEEEeC--C-HHHHHHcCCCcCCEEEE
Confidence            678887    9999 899999999999986          2457887777  2 33377899999999999

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.26  E-value=4.4e-06  Score=70.13  Aligned_cols=71  Identities=11%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      +..++|.|+|+    ||++ |++..|+++++++.+..+       ..++.+.-++++++                     
T Consensus        17 Gk~vll~F~at----wC~~-C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d   84 (132)
T cd02964          17 GKTVGLYFSAS----WCPP-CRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFED   84 (132)
T ss_pred             CCEEEEEEECC----CCch-HHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCc
Confidence            34799999999    8999 899999999999988432       12343444444332                     


Q ss_pred             ----cchHhHcCCCCCceEEEEcCCCCCC
Q 048343          127 ----QSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       127 ----~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                          ..+.+.|+++++|+.+++.++ |+.
T Consensus        85 ~~~~~~~~~~~~v~~iPt~~lid~~-G~i  112 (132)
T cd02964          85 EELRELLEKQFKVEGIPTLVVLKPD-GDV  112 (132)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCC-CCE
Confidence                245677999999999999864 443

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.20  E-value=7.3e-06  Score=70.68  Aligned_cols=75  Identities=19%  Similarity=0.295  Sum_probs=53.1

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      ..++|.|||+    ||++ |++..|.++++.+.+.+.++..  .++++-+.-++.|+                       
T Consensus        26 k~vlL~FwAs----WCpp-Cr~e~P~L~~ly~~~~~~~~~~--~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~   98 (146)
T cd03008          26 RVLLLFFGAV----VSPQ-CQLFAPKLKDFFVRLTDEFYVD--RSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED   98 (146)
T ss_pred             CEEEEEEECC----CChh-HHHHHHHHHHHHHHHHhhcccc--cCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccc
Confidence            4799999999    8999 8999999999988775432100  11234444444332                       


Q ss_pred             --CcchHhHcCCCCCceEEEEcCCCCCC
Q 048343          126 --SQSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       126 --~~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                        ..++.++|++.++|+.+++.|. |+.
T Consensus        99 ~~~~~l~~~y~v~~iPt~vlId~~-G~V  125 (146)
T cd03008          99 EFRRELEAQFSVEELPTVVVLKPD-GDV  125 (146)
T ss_pred             hHHHHHHHHcCCCCCCEEEEECCC-CcE
Confidence              1257888999999999999985 554

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.19  E-value=3.2e-06  Score=66.74  Aligned_cols=58  Identities=12%  Similarity=-0.008  Sum_probs=50.9

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL  143 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~  143 (347)
                      .-+..|+++    ||+. |+...+-+++++..+           +++-|..+|+++.++++++||+.++|++++
T Consensus        14 v~i~~F~~~----~C~~-C~~~~~~~~~l~~~~-----------~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi   71 (89)
T cd03026          14 INFETYVSL----SCHN-CPDVVQALNLMAVLN-----------PNIEHEMIDGALFQDEVEERGIMSVPAIFL   71 (89)
T ss_pred             EEEEEEECC----CCCC-cHHHHHHHHHHHHHC-----------CCceEEEEEhHhCHHHHHHcCCccCCEEEE
Confidence            456778887    8999 799999999998653           369999999999999999999999999975

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.15  E-value=7.3e-06  Score=67.99  Aligned_cols=77  Identities=18%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhc----C-CCCCC------CCCceEEEEEEccCCcchHhHcCCCC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIAN----N-VDNPS------SRGKLFFCYLEFKESQSSFALFAVNS  137 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~----~-p~~~~------~~~~v~F~~vD~~~~~~lf~~~~I~s  137 (347)
                      ..++|.|||+    ||++ |++..|+++++++.+.-+    . .+..+      ...++-|..+.+|++.++.+.|++++
T Consensus        26 k~vvv~F~a~----~C~~-C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~  100 (127)
T cd03010          26 KPYLLNVWAS----WCAP-CREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG  100 (127)
T ss_pred             CEEEEEEEcC----cCHH-HHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence            3689999998    8999 799999999998775100    0 00000      01122344455667778999999999


Q ss_pred             CceEEEEcCCCCCC
Q 048343          138 LPHIRLVGPDAKSL  151 (347)
Q Consensus       138 vP~l~~fpp~~g~~  151 (347)
                      +|+.+++.++ |..
T Consensus       101 ~P~~~~ld~~-G~v  113 (127)
T cd03010         101 VPETFLIDGD-GII  113 (127)
T ss_pred             CCeEEEECCC-ceE
Confidence            9987777653 443

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.12  E-value=1.4e-05  Score=63.30  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----------------------  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----------------------  126 (347)
                      ..++++|+++    ||+. |+...|.+.++.+++.         ++++.++.++.+.+                      
T Consensus        20 k~~ll~f~~~----~C~~-C~~~~~~l~~~~~~~~---------~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (116)
T cd02966          20 KVVLVNFWAS----WCPP-CRAEMPELEALAKEYK---------DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP   85 (116)
T ss_pred             CEEEEEeecc----cChh-HHHHhHHHHHHHHHhC---------CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence            3689999998    8999 7999999999998873         24688889999875                      


Q ss_pred             -cchHhHcCCCCCceEEEEcCC
Q 048343          127 -QSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       127 -~~lf~~~~I~svP~l~~fpp~  147 (347)
                       .++.+.|++.++|+++++.|+
T Consensus        86 ~~~~~~~~~~~~~P~~~l~d~~  107 (116)
T cd02966          86 DGELAKAYGVRGLPTTFLIDRD  107 (116)
T ss_pred             cchHHHhcCcCccceEEEECCC
Confidence             789999999999999999875

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.10  E-value=3.3e-05  Score=67.66  Aligned_cols=106  Identities=21%  Similarity=0.428  Sum_probs=79.9

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .-|.++|++|++++.   +++++ .++++|...    .... ...+...++.+|+++          .+++.|+.+|.+.
T Consensus        77 P~v~~~t~~n~~~~~---~~~~~-~~~~~~~~~----~~~~-~~~~~~~l~~~a~~~----------~~~~~f~~~d~~~  137 (184)
T PF13848_consen   77 PLVPELTPENFEKLF---SSPKP-PVLILFDNK----DNES-TEAFKKELQDIAKKF----------KGKINFVYVDADD  137 (184)
T ss_dssp             TSCEEESTTHHHHHH---STSSE-EEEEEEETT----THHH-HHHHHHHHHHHHHCT----------TTTSEEEEEETTT
T ss_pred             ccccccchhhHHHHh---cCCCc-eEEEEEEcC----Cchh-HHHHHHHHHHHHHhc----------CCeEEEEEeehHH
Confidence            359999999999997   44332 355566543    3455 588888899999876          2579999999998


Q ss_pred             CcchHhHcCCC--CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          126 SQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       126 ~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      .++..+.+|++  .+|+++++.+..+.     .. ...++..+.+.+.+|+++
T Consensus       138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~-----~~-~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  138 FPRLLKYFGIDEDDLPALVIFDSNKGK-----YY-YLPEGEITPESIEKFLND  184 (184)
T ss_dssp             THHHHHHTTTTTSSSSEEEEEETTTSE-----EE-E--SSCGCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCCccCCEEEEEECCCCc-----EE-cCCCCCCCHHHHHHHhcC
Confidence            88999999999  89999999864321     11 112557889999999974

...

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.09  E-value=6.8e-06  Score=78.92  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=71.4

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEE-EEEecCCCCCCChhhcccc---hHHHHHHHHHhhhcCCCCCCCCCceEEE
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSIL-IFFDAHQLHNKPELHLQEL---RNEFSLVASSFIANNVDNPSSRGKLFFC  119 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vv-V~fTA~~~~~~C~~cC~~l---~pefe~vA~s~~~~~p~~~~~~~~v~F~  119 (347)
                      ..+.|++||+.||++.+   .   .|.++ |+|+.+.+... .. -+++   +-..|.+|+-.         .+..+-|+
T Consensus        32 GkDRVi~LneKNfk~~l---K---kyd~l~l~yh~p~~~dk-~~-qkq~~m~E~~LELaAQVl---------E~~gigfg   94 (383)
T PF01216_consen   32 GKDRVIDLNEKNFKRAL---K---KYDVLVLYYHEPVESDK-VS-QKQFQMTELVLELAAQVL---------EDKGIGFG   94 (383)
T ss_dssp             SS--CEEE-TTTHHHHH---H---H-SEEEEEEE--STSSH-HH-HHHHHHHHHHHHHHHHHC---------GGCTEEEE
T ss_pred             CccceEEcchhHHHHHH---H---hhcEEEEEEecCCccCH-HH-HHHHHHHHHHHHHHHHhc---------cccCcceE
Confidence            45679999999999997   2   34455 45666543211 11 1222   22334444433         13469999


Q ss_pred             EEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          120 YLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       120 ~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      .||..+..++++++|+...+++++|+.+  .       ...|+|.++|+.+.+||-+...-++
T Consensus        95 ~VD~~Kd~klAKKLgv~E~~SiyVfkd~--~-------~IEydG~~saDtLVeFl~dl~edPV  148 (383)
T PF01216_consen   95 MVDSKKDAKLAKKLGVEEEGSIYVFKDG--E-------VIEYDGERSADTLVEFLLDLLEDPV  148 (383)
T ss_dssp             EEETTTTHHHHHHHT--STTEEEEEETT--E-------EEEE-S--SHHHHHHHHHHHHSSSE
T ss_pred             EeccHHHHHHHHhcCccccCcEEEEECC--c-------EEEecCccCHHHHHHHHHHhcccch
Confidence            9999999999999999999999999863  2       2467788999999999998877544

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.07  E-value=1.8e-05  Score=80.90  Aligned_cols=99  Identities=11%  Similarity=0.050  Sum_probs=72.6

Q ss_pred             hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHH-HHHHHhhhcCCCCCCCCCceEEEEEEccCCc----ch
Q 048343           55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFS-LVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SS  129 (347)
Q Consensus        55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe-~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~l  129 (347)
                      ..++.+   ...|+..++|+|||.    ||-. ||++++.-- ++....         .-.++..-++|.+++.    ++
T Consensus       464 ~L~~~l---a~~~~~pVmlDfyAd----WCvt-CK~~e~~tfsd~~v~~---------~~~~~vlLqaDvT~~~p~~~~l  526 (569)
T COG4232         464 ELDQAL---AEAKAKPVMLDFYAD----WCVT-CKENEKYTFSDPQVQQ---------ALQDVVLLQADVTANDPAITAL  526 (569)
T ss_pred             HHHHHH---HhCCCCcEEEeeehh----HHHH-hHhhhhhccCcHHHHH---------hcCCeEEEEeeecCCCHHHHHH
Confidence            566666   444667899999999    9999 798877532 222111         1246899999999753    78


Q ss_pred             HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .++||+-++|++++|+++ |++.      ....+-.+++.+.+++++.
T Consensus       527 Lk~~~~~G~P~~~ff~~~-g~e~------~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         527 LKRLGVFGVPTYLFFGPQ-GSEP------EILTGFLTADAFLEHLERA  567 (569)
T ss_pred             HHHcCCCCCCEEEEECCC-CCcC------cCCcceecHHHHHHHHHHh
Confidence            999999999999999986 4432      1134457899999999765

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.06  E-value=1.7e-05  Score=64.89  Aligned_cols=102  Identities=13%  Similarity=0.167  Sum_probs=71.2

Q ss_pred             hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-H--HHHHHHhhhcCCCCCCCCCceEEEEEEccC--Ccch
Q 048343           55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-F--SLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSS  129 (347)
Q Consensus        55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-f--e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~l  129 (347)
                      +|++.+. .+..++..++|+|+++    ||+. |+.+..+ |  +.|.+..          +++..+.++|+++  +.++
T Consensus         5 s~~~a~~-~Ak~~~K~llv~~~~~----~c~~-c~~~~~~vl~~~~v~~~l----------~~~~v~~~~d~~~~e~~~~   68 (114)
T cd02958           5 SFEDAKQ-EAKSEKKWLLVYLQSE----DEFD-SQVLNRDLWSNESVKEFI----------RENFIFWQCDIDSSEGQRF   68 (114)
T ss_pred             CHHHHHH-HHHhhCceEEEEEecC----Ccch-HHHHHHHHcCCHHHHHHH----------HhCEEEEEecCCCccHHHH
Confidence            4555442 1233456899999998    8999 7988764 2  3343333          2357888899984  5689


Q ss_pred             HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      .+.|++.++|++.++.|.+|+..      .+..|..+++++.+-|++..
T Consensus        69 ~~~~~~~~~P~~~~i~~~~g~~l------~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          69 LQSYKVDKYPHIAIIDPRTGEVL------KVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             HHHhCccCCCeEEEEeCccCcEe------EEEcCCCCHHHHHHHHHHHH
Confidence            99999999999999988434432      34456678888888887653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.02  E-value=2.5e-05  Score=64.17  Aligned_cols=88  Identities=13%  Similarity=0.072  Sum_probs=56.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhc----CCCCCC------CCCceEEEEEEccCCcchHhHcCCCCCc
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIAN----NVDNPS------SRGKLFFCYLEFKESQSSFALFAVNSLP  139 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~----~p~~~~------~~~~v~F~~vD~~~~~~lf~~~~I~svP  139 (347)
                      .++|.|+++    ||++ |+...|.++++++++.--    .++..+      ...++-|- +-.+++.++.++|++.++|
T Consensus        22 ~~vl~F~~~----~C~~-C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P   95 (123)
T cd03011          22 PVLVYFWAT----WCPV-CRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFP-VINDPDGVISARWGVSVTP   95 (123)
T ss_pred             EEEEEEECC----cChh-hhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCcc-EEECCCcHHHHhCCCCccc
Confidence            688999998    8999 899999999988764200    000000      00112222 2235567899999999999


Q ss_pred             eEEEEcCCCCCCCCccccccccccccCHHHHH
Q 048343          140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMA  171 (347)
Q Consensus       140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~  171 (347)
                      +++++.++ | ..      ....|..+.+++.
T Consensus        96 ~~~vid~~-g-i~------~~~~g~~~~~~~~  119 (123)
T cd03011          96 AIVIVDPG-G-IV------FVTTGVTSEWGLR  119 (123)
T ss_pred             EEEEEcCC-C-eE------EEEeccCCHHHHH
Confidence            99999875 3 32      2334445555554

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=4.8e-05  Score=68.86  Aligned_cols=86  Identities=19%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             CCCeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           45 EAGVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        45 ~~~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +..+--+ |++.+++.+   ++++.-+.++.|.|.    |-+. |+.+.|.|.+++-.|.         .+.+.|+++|+
T Consensus       123 pe~ikyf~~~q~~deel---~rnk~t~WlIeFfa~----ws~~-Cv~~spvfaeLS~kyn---------~~~lkFGkvDi  185 (265)
T KOG0914|consen  123 PETIKYFTNMQLEDEEL---DRNKRTYWLIEFFAC----WSPK-CVRFSPVFAELSIKYN---------NNLLKFGKVDI  185 (265)
T ss_pred             chheeeecchhhHHHHh---ccCCceEEEEEEEee----cChh-hcccccccHHHHHHhC---------CCCCcccceee
Confidence            3446677 667777776   444455567777777    7888 8999999999999883         34699999999


Q ss_pred             cCCcchHhHcCCCC------CceEEEEcCC
Q 048343          124 KESQSSFALFAVNS------LPHIRLVGPD  147 (347)
Q Consensus       124 ~~~~~lf~~~~I~s------vP~l~~fpp~  147 (347)
                      ..-+++.++|+|+.      .||+.+|..|
T Consensus       186 Grfpd~a~kfris~s~~srQLPT~ilFq~g  215 (265)
T KOG0914|consen  186 GRFPDVAAKFRISLSPGSRQLPTYILFQKG  215 (265)
T ss_pred             ccCcChHHheeeccCcccccCCeEEEEccc
Confidence            99999999999975      8999999964

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.93  E-value=3.2e-05  Score=85.98  Aligned_cols=90  Identities=12%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE---c---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE---F---------------------  123 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD---~---------------------  123 (347)
                      ...+||.|||+    ||++ |+...|+++++++.|.         +.++.+..+.   +                     
T Consensus       420 GK~vll~FWAs----WC~p-C~~e~P~L~~l~~~y~---------~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~p  485 (1057)
T PLN02919        420 GKVVILDFWTY----CCIN-CMHVLPDLEFLEKKYK---------DQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHP  485 (1057)
T ss_pred             CCEEEEEEECC----cChh-HHhHhHHHHHHHHHcC---------CCCeEEEEEecccccccccHHHHHHHHHHhCCCcc
Confidence            45799999999    8999 8999999999999873         1235554442   2                     


Q ss_pred             ---cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          124 ---KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       124 ---~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                         |.+.++.++|+++++|+.+++.++ |+..      .+..+....+++.+++++.+
T Consensus       486 vv~D~~~~~~~~~~V~~iPt~ilid~~-G~iv------~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        486 VVNDGDMYLWRELGVSSWPTFAVVSPN-GKLI------AQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             EEECCchHHHHhcCCCccceEEEECCC-CeEE------EEEecccCHHHHHHHHHHHH
Confidence               223467889999999999999764 4543      23345566788888887664

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.88  E-value=7.2e-05  Score=58.65  Aligned_cols=65  Identities=15%  Similarity=0.360  Sum_probs=47.7

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-----------------------
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-----------------------  126 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-----------------------  126 (347)
                      .++|.|||+    ||++ |++..|+.+++.+.|.+        ++++-|..+..|+.                       
T Consensus         3 ~~ll~fwa~----~c~~-c~~~~~~l~~l~~~~~~--------~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~   69 (95)
T PF13905_consen    3 PVLLYFWAS----WCPP-CKKELPKLKELYKKYKK--------KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDD   69 (95)
T ss_dssp             EEEEEEE-T----TSHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTH
T ss_pred             EEEEEEECC----CCHH-HHHHHHHHHHHHHHhCC--------CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcc
Confidence            689999999    8999 89999999999999852        23455555444432                       


Q ss_pred             --cchHhHcCCCCCceEEEEcCC
Q 048343          127 --QSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       127 --~~lf~~~~I~svP~l~~fpp~  147 (347)
                        .++.+.++++++|++++..|+
T Consensus        70 ~~~~l~~~~~i~~iP~~~lld~~   92 (95)
T PF13905_consen   70 NNSELLKKYGINGIPTLVLLDPD   92 (95)
T ss_dssp             HHHHHHHHTT-TSSSEEEEEETT
T ss_pred             hHHHHHHHCCCCcCCEEEEECCC
Confidence              247788899999999998874

...

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.86  E-value=0.00013  Score=68.88  Aligned_cols=110  Identities=10%  Similarity=0.114  Sum_probs=74.9

Q ss_pred             CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .|.++++ +.|-+.+.  +.+++-.|||.|+-+    .++. |+.+...++.+|..|.           .+.|+++..+.
T Consensus       126 ~v~ei~~~e~~l~~ie--~~~~~~~VVVHiY~~----~~~~-C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~  187 (265)
T PF02114_consen  126 EVYEIDSGEEFLDAIE--KESKSTWVVVHIYEP----GFPR-CEIMNSCLECLARKYP-----------EVKFVKIRASK  187 (265)
T ss_dssp             SEEE--SHHHHHHHCC--TSSTT-EEEEEEE-T----TSCC-HHHHHHHHHHHHHH-T-----------TSEEEEEEECG
T ss_pred             eEEEccChhhHHHHHh--ccCCCcEEEEEEEeC----CCch-HHHHHHHHHHHHHhCC-----------ceEEEEEehhc
Confidence            5899975 78888872  444566899999998    6889 8999999999999872           58999999988


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~  177 (347)
                      .+ ....|....+|++++|..  |......-.+ +.......++++..||.++
T Consensus       188 ~~-~~~~f~~~~LPtllvYk~--G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  188 CP-ASENFPDKNLPTLLVYKN--GDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             CC-TTTTS-TTC-SEEEEEET--TEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             cC-cccCCcccCCCEEEEEEC--CEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            66 778899999999999995  4432000011 1112246789998888765

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.78  E-value=2.5e-05  Score=60.20  Aligned_cols=63  Identities=13%  Similarity=0.202  Sum_probs=47.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLV  144 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~f  144 (347)
                      +..++|.|+|+    ||+. |+.++.++   +++.+.+.          ++..+.++|.++...-.+..+ +.+|+++++
T Consensus        17 ~kpvlv~f~a~----wC~~-C~~l~~~~~~~~~v~~~~~----------~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~l   80 (82)
T PF13899_consen   17 GKPVLVDFGAD----WCPP-CKKLEREVFSDPEVQEALN----------KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFL   80 (82)
T ss_dssp             TSEEEEEEETT----TTHH-HHHHHHHTTTSHHHHHHHH----------HCSEEEEEETTTHHHHHHHHH-CSSSEEEEE
T ss_pred             CCCEEEEEECC----CCHh-HHHHHHHHcCCHHHHHHHH----------CCEEEEEEEcCCCChhHHhCC-ccCCEEEEe
Confidence            44799999998    8999 89999888   55655443          358999999987653222222 679999998


Q ss_pred             cC
Q 048343          145 GP  146 (347)
Q Consensus       145 pp  146 (347)
                      .|
T Consensus        81 dp   82 (82)
T PF13899_consen   81 DP   82 (82)
T ss_dssp             ET
T ss_pred             CC
Confidence            75

...

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=97.71  E-value=5.7e-05  Score=61.12  Aligned_cols=59  Identities=14%  Similarity=0.113  Sum_probs=38.9

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc--CCcchHhHcCCCCCceEE
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK--ESQSSFALFAVNSLPHIR  142 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~--~~~~lf~~~~I~svP~l~  142 (347)
                      .++|.|+++    ||++ |++..|+++++++.+..        +-.+. +..|-+  +.++..+++++.+.|++.
T Consensus        23 ~vvl~F~~~----wC~~-C~~~~p~l~~~~~~~~~--------~~~vi-~v~~~~~~~~~~~~~~~~~~~~p~~~   83 (114)
T cd02967          23 PTLLFFLSP----TCPV-CKKLLPVIRSIARAEAD--------WLDVV-LASDGEKAEHQRFLKKHGLEAFPYVL   83 (114)
T ss_pred             eEEEEEECC----CCcc-hHhHhHHHHHHHHHhcC--------CcEEE-EEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence            688999998    8999 89999999998876521        11222 222222  234566677776666653

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.70  E-value=0.00053  Score=61.41  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------c-----cCCcc
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------F-----KESQS  128 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------~-----~~~~~  128 (347)
                      ++..++|.|||+    ||++ |++..|+++++.+.+          +.++.++..|             +     ....+
T Consensus        73 ~gk~vvl~F~at----wCp~-C~~~lp~l~~~~~~~----------~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (189)
T TIGR02661        73 PGRPTLLMFTAP----SCPV-CDKLFPIIKSIARAE----------ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAE  137 (189)
T ss_pred             CCCEEEEEEECC----CChh-HHHHHHHHHHHHHhc----------CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhH
Confidence            344689999998    8999 799999999877543          1234444321             1     12457


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +.++|+++++|+.+++.++ |...      .. ......+++.+.++
T Consensus       138 i~~~y~v~~~P~~~lID~~-G~I~------~~-g~~~~~~~le~ll~  176 (189)
T TIGR02661       138 IGMAFQVGKIPYGVLLDQD-GKIR------AK-GLTNTREHLESLLE  176 (189)
T ss_pred             HHHhccCCccceEEEECCC-CeEE------Ec-cCCCCHHHHHHHHH
Confidence            8889999999999998764 4432      11 11234556666665

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.58  E-value=0.00058  Score=56.06  Aligned_cols=107  Identities=15%  Similarity=0.174  Sum_probs=74.9

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |-++|.+|++.+.   +++-+-. +++|++.       . -..+.+.+++||++..+       ..+++.|+.+|.++..
T Consensus         1 ~~e~t~e~~~~~~---~~~~~~~-~l~f~~~-------~-~~~~~~~~~~vAk~~~~-------~kgki~Fv~~d~~~~~   61 (111)
T cd03072           1 VREITFENAEELT---EEGLPFL-ILFHDKD-------D-LESLKEFKQAVARQLIS-------EKGAINFLTADGDKFR   61 (111)
T ss_pred             CcccccccHHHHh---cCCCCeE-EEEecch-------H-HHHHHHHHHHHHHHHHh-------cCceEEEEEEechHhh
Confidence            4578999999987   4433323 3344222       1 37789999999998211       1467999999999988


Q ss_pred             chHhHcCCCC--CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          128 SSFALFAVNS--LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       128 ~lf~~~~I~s--vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ...+.||++.  .|.+.+..-. +..+   ..+  .+...++++|.+|+++...
T Consensus        62 ~~~~~fgl~~~~~P~i~i~~~~-~~~K---y~~--~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          62 HPLLHLGKTPADLPVIAIDSFR-HMYL---FPD--FEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             hHHHHcCCCHhHCCEEEEEcch-hcCc---CCC--CccccCHHHHHHHHHHHhc
Confidence            8999999998  9999998742 1111   111  3345789999999988653

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.56  E-value=0.00028  Score=48.75  Aligned_cols=60  Identities=20%  Similarity=0.310  Sum_probs=48.3

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh---HcCCCCCceEEEEcCC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA---LFAVNSLPHIRLVGPD  147 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~---~~~I~svP~l~~fpp~  147 (347)
                      ++.|++.    ||+. |+++.+.++++  +.         ..+++.+..+|.++..+..+   .+++.++|+++++.++
T Consensus         1 l~~~~~~----~c~~-c~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAP----WCPF-CQALRPVLAEL--AL---------LNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECC----CChh-HHhhhhHHHHH--Hh---------hCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            3567777    8999 89999999988  22         13478999999998775544   8999999999999874

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>smart00594 UAS UAS domain

Probab=97.55  E-value=0.00045  Score=57.45  Aligned_cols=105  Identities=11%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccC--C
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKE--S  126 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~  126 (347)
                      -..+|++.+. ....++..++|+|+++    ||+. |+.+.-+.   ++|.+..          +++..+..+|+++  +
T Consensus        12 ~~gs~~~a~~-~Ak~~~K~~lv~~~~~----~c~~-c~~~~r~vl~~~~V~~~i----------~~~fv~~~~dv~~~eg   75 (122)
T smart00594       12 YQGSLEAAKQ-EASRQRRLLWLYLHSQ----DSPD-SQVFNRDVLCNEAVKSLI----------RENFIFWQVDVDTSEG   75 (122)
T ss_pred             eeCCHHHHHH-HHHhhcCCEEEEEeCC----CCch-HHHHHHHHccCHHHHHHH----------HcCEEEEEecCCChhH
Confidence            3346666652 1222344799999998    8999 78876542   1222222          2358888899885  4


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      .++.++|++++.|++.++.|..|...  -....+..|..+++++++++
T Consensus        76 ~~l~~~~~~~~~P~~~~l~~~~g~~~--~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       76 QRVSQFYKLDSFPYVAIVDPRTGQRV--IEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             HHHHHhcCcCCCCEEEEEecCCCcee--EEEeccccCCCCHHHHHHhh
Confidence            58999999999999999988643210  01123345667788888765

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=97.55  E-value=0.00038  Score=57.79  Aligned_cols=64  Identities=9%  Similarity=0.074  Sum_probs=46.7

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc--------------------------
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF--------------------------  123 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~--------------------------  123 (347)
                      .++|.|+|+    ||++ |++..|+++++.+.+..         +++.+.-++.                          
T Consensus        25 ~vvl~F~a~----~C~~-C~~~~p~l~~l~~~~~~---------~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (126)
T cd03012          25 VVLLDFWTY----CCIN-CLHTLPYLTDLEQKYKD---------DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA   90 (126)
T ss_pred             EEEEEEECC----CCcc-HHHHHHHHHHHHHHcCc---------CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence            688999998    8999 79999999999998742         1233333321                          


Q ss_pred             -cCCcchHhHcCCCCCceEEEEcCC
Q 048343          124 -KESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       124 -~~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                       |...++.+.|+++++|+.+++.++
T Consensus        91 ~D~~~~~~~~~~v~~~P~~~vid~~  115 (126)
T cd03012          91 NDNDYATWRAYGNQYWPALYLIDPT  115 (126)
T ss_pred             ECCchHHHHHhCCCcCCeEEEECCC
Confidence             233456777888888988888654

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.52  E-value=0.00036  Score=58.04  Aligned_cols=81  Identities=6%  Similarity=0.080  Sum_probs=51.1

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCC---CCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQ---LHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----  126 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~---~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----  126 (347)
                      ++|.+.+.. ....+..+.|+|+++.   -+.||+. |+..+|..+++-+.-          .++..|..+.+.+.    
T Consensus         6 ~~~~~~~~~-~~~~~~~~fl~F~gs~d~~g~sWCPD-C~~aep~v~~~f~~~----------~~~~~lv~v~VG~r~~Wk   73 (119)
T PF06110_consen    6 DEFEKLVEE-YENSGKPLFLLFTGSKDETGQSWCPD-CVAAEPVVEKAFKKA----------PENARLVYVEVGDRPEWK   73 (119)
T ss_dssp             HHHHHHHHC---TTTSEEEEEEE--B-TTS-BSSHH-HHHHHHHHHHHHHH-----------STTEEEEEEE---HHHHC
T ss_pred             HHHHHHHHH-hhcCCCeEEEEEEccCCCCCCcccHH-HHHHHHHHHHHHHhC----------CCCceEEEEEcCCHHHhC
Confidence            456666621 1123457888999763   4689999 899999999876541          23678888888542    


Q ss_pred             --cchHhH---cCCCCCceEEEEcC
Q 048343          127 --QSSFAL---FAVNSLPHIRLVGP  146 (347)
Q Consensus       127 --~~lf~~---~~I~svP~l~~fpp  146 (347)
                        ...|+.   ++|++|||++-+..
T Consensus        74 dp~n~fR~~p~~~l~~IPTLi~~~~   98 (119)
T PF06110_consen   74 DPNNPFRTDPDLKLKGIPTLIRWET   98 (119)
T ss_dssp             -TTSHHHH--CC---SSSEEEECTS
T ss_pred             CCCCCceEcceeeeeecceEEEECC
Confidence              257877   99999999999974

; PDB: 1V9W_A 1WOU_A.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0022  Score=55.39  Aligned_cols=78  Identities=17%  Similarity=0.300  Sum_probs=51.6

Q ss_pred             CCCCceEEEEEecCCCCCCChhhcccchHHHHHHHH--HhhhcCCC----CCCCCCceEEEEEEccC---CcchHhHcCC
Q 048343           65 TPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVAS--SFIANNVD----NPSSRGKLFFCYLEFKE---SQSSFALFAV  135 (347)
Q Consensus        65 ~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~--s~~~~~p~----~~~~~~~v~F~~vD~~~---~~~lf~~~~I  135 (347)
                      .|.+.+.++.|-++    .|.. |.++..+...+-+  +|.+.|=.    ..++++.+.|..-|-++   .+++++.|++
T Consensus        39 ~~~~Kylllmfes~----~C~y-C~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v  113 (182)
T COG2143          39 SPNDKYLLLMFESN----GCSY-CERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV  113 (182)
T ss_pred             CccCcEEEEEEcCC----CChH-HHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence            45566889999988    7999 7998876654432  33332100    00134456666555433   2489999999


Q ss_pred             CCCceEEEEcCC
Q 048343          136 NSLPHIRLVGPD  147 (347)
Q Consensus       136 ~svP~l~~fpp~  147 (347)
                      ++-||+++|..+
T Consensus       114 rstPtfvFfdk~  125 (182)
T COG2143         114 RSTPTFVFFDKT  125 (182)
T ss_pred             ccCceEEEEcCC
Confidence            999999999854

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.49  E-value=0.00042  Score=63.57  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=59.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc---------CCcchHhHcCCCCCc
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK---------ESQSSFALFAVNSLP  139 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~---------~~~~lf~~~~I~svP  139 (347)
                      -+-+++|+.+    .|+. |+.+.|..+.+|+.|.          =+|+.+.+|=.         .++++++++|++.+|
T Consensus       121 ~~gL~~F~~~----~C~~-C~~~~pil~~~~~~yg----------~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~P  185 (215)
T PF13728_consen  121 KYGLFFFYRS----DCPY-CQQQAPILQQFADKYG----------FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTP  185 (215)
T ss_pred             CeEEEEEEcC----CCch-hHHHHHHHHHHHHHhC----------CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence            3567778877    7999 8999999999999871          24666666511         246889999999999


Q ss_pred             eEEEEcCCCCCCCCccccccccccccCHHHHHH
Q 048343          140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMAD  172 (347)
Q Consensus       140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~  172 (347)
                      ++++..|++++.      .....|..+.++|.+
T Consensus       186 al~Lv~~~~~~~------~pv~~G~~s~~~L~~  212 (215)
T PF13728_consen  186 ALFLVNPNTKKW------YPVSQGFMSLDELED  212 (215)
T ss_pred             EEEEEECCCCeE------EEEeeecCCHHHHHH
Confidence            999999864222      112234456666654

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.45  E-value=0.001  Score=54.70  Aligned_cols=105  Identities=17%  Similarity=0.239  Sum_probs=71.3

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |.++|.+|+..+.   ..  +. .++++-...+. .-.. -..+.+.+.++|+.+.         ++++.|+.+|.++..
T Consensus         1 v~~~~~en~~~~~---~~--~l-~~~~~~~~~~~-~~~~-~~~~~~~~~~vAk~fk---------~gki~Fv~~D~~~~~   63 (111)
T cd03073           1 VGHRTKDNRAQFT---KK--PL-VVAYYNVDYSK-NPKG-TNYWRNRVLKVAKDFP---------DRKLNFAVADKEDFS   63 (111)
T ss_pred             CCeeccchHHHhc---cC--Ce-EEEEEeccccC-ChhH-HHHHHHHHHHHHHHCc---------CCeEEEEEEcHHHHH
Confidence            4578899999885   32  22 33333221000 1122 3678999999999872         147999999999988


Q ss_pred             chHhHcCCCC----CceEEEEcCCCCCCCCcccccccccccc-CHHHHHHHHHhh
Q 048343          128 SSFALFAVNS----LPHIRLVGPDAKSLKDDSVQMEQGDFAR-MAESMADFVQSR  177 (347)
Q Consensus       128 ~lf~~~~I~s----vP~l~~fpp~~g~~~~~~~~~~~~~~~~-~a~~l~~fi~~~  177 (347)
                      ...+.||++.    .|.+.+.... + .+      +..+... +++.|.+|+++.
T Consensus        64 ~~l~~fgl~~~~~~~P~~~i~~~~-~-~K------Y~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          64 HELEEFGLDFSGGEKPVVAIRTAK-G-KK------YVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             HHHHHcCCCcccCCCCEEEEEeCC-C-Cc------cCCCcccCCHHHHHHHHHHh
Confidence            8999999985    9999998742 2 22      1123345 899999999864

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.39  E-value=0.00057  Score=53.17  Aligned_cols=65  Identities=18%  Similarity=0.137  Sum_probs=55.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-CCcchHhHcC--CCCCceEEEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-ESQSSFALFA--VNSLPHIRLV  144 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-~~~~lf~~~~--I~svP~l~~f  144 (347)
                      +..+++.|+++    ||++ |+...|.++.+++.+.          ..+-|..+|.. .+++....++  +..+|++..+
T Consensus        32 ~~~~~v~f~~~----~C~~-C~~~~~~l~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~   96 (127)
T COG0526          32 GKPVLVDFWAP----WCPP-CRAEAPLLEELAEEYG----------GDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLF   96 (127)
T ss_pred             CceEEEEEEcC----cCHH-HHhhchhHHHHHHHhc----------CCcEEEEEECCCCChHHHHHHhhhhccCCeEEEE
Confidence            34677777877    9999 8999999999999872          26889999997 7889999999  9999999988


Q ss_pred             cCC
Q 048343          145 GPD  147 (347)
Q Consensus       145 pp~  147 (347)
                      ..+
T Consensus        97 ~~~   99 (127)
T COG0526          97 KDG   99 (127)
T ss_pred             eCc
Confidence            764

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.35  E-value=0.00072  Score=60.51  Aligned_cols=114  Identities=10%  Similarity=0.008  Sum_probs=66.9

Q ss_pred             CCCeEEcChhhH--HHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHH-hhhc-CC--CCCC-CCC---
Q 048343           45 EAGVIHLNDQLV--SRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASS-FIAN-NV--DNPS-SRG---  114 (347)
Q Consensus        45 ~~~VI~L~~~nf--~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s-~~~~-~p--~~~~-~~~---  114 (347)
                      ++|=+.++++++  +..-  .+.-+....+|-|||+    ||++ |+.-.|..+++++. +..+ ++  -+.. +++   
T Consensus        36 ~~ge~~~~~~~~~y~~~~--~~~l~GKV~lvn~~As----wc~~-c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~  108 (184)
T TIGR01626        36 EYGEIVLSGKDTVYQPWG--SAELAGKVRVVHHIAG----RTSA-KEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVG  108 (184)
T ss_pred             CCceEEEcCCcccceecc--HHHcCCCEEEEEEEec----CCCh-hhccchHHHHHHHcCCCcccccceEEEECccchhh
Confidence            345566666544  3332  2344566889999999    8999 89999999999753 2110 00  0000 000   


Q ss_pred             ------------ceE--EEEEEccCCcchHhHcCCCCCceE-EEEcCCCCCCCCccccccccccccCHHHHHH
Q 048343          115 ------------KLF--FCYLEFKESQSSFALFAVNSLPHI-RLVGPDAKSLKDDSVQMEQGDFARMAESMAD  172 (347)
Q Consensus       115 ------------~v~--F~~vD~~~~~~lf~~~~I~svP~l-~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~  172 (347)
                                  +.-  +..+=.|++..+...+|++++|+- +++.+. |...      ....|+.+.+++.+
T Consensus       109 ~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~-GkVv------~~~~G~l~~ee~e~  174 (184)
T TIGR01626       109 TGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKT-GKVK------FVKEGALSDSDIQT  174 (184)
T ss_pred             HHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCC-CcEE------EEEeCCCCHHHHHH
Confidence                        100  112333455567889999999888 677654 5543      34455556666554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.24  E-value=0.0019  Score=54.56  Aligned_cols=67  Identities=12%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHH---HHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEE
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFS---LVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRL  143 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe---~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~  143 (347)
                      ++..++|.|++.    ||++ |+.++.++-   +|++ +.         +++....++|.+...+-....+ +.+|++++
T Consensus        22 ~~Kpvmv~f~sd----wC~~-Ck~l~k~~f~~~eV~~-~l---------~~~Fv~V~l~~d~td~~~~~~g-~~vPtivF   85 (130)
T cd02960          22 SNKPLMVIHHLE----DCPH-SQALKKAFAEHKEIQK-LA---------QEDFIMLNLVHETTDKNLSPDG-QYVPRIMF   85 (130)
T ss_pred             CCCeEEEEEeCC----cCHh-HHHHHHHhhCCHHHHH-HH---------HhCeEEEEEEeccCCCCcCccC-cccCeEEE
Confidence            345799999998    8999 799988742   2332 21         1235555777763321111244 78999999


Q ss_pred             EcCCCCC
Q 048343          144 VGPDAKS  150 (347)
Q Consensus       144 fpp~~g~  150 (347)
                      +.|+ |+
T Consensus        86 ld~~-g~   91 (130)
T cd02960          86 VDPS-LT   91 (130)
T ss_pred             ECCC-CC
Confidence            9986 44

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.24  E-value=0.00058  Score=52.70  Aligned_cols=80  Identities=16%  Similarity=0.239  Sum_probs=55.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                      +++||.+    +|+. |.+++...+.++.            ..++-.-.+|+++++++.++|+. .||.+.+=.+.  ..
T Consensus         2 l~l~~k~----~C~L-C~~a~~~L~~~~~------------~~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~--~~   61 (81)
T PF05768_consen    2 LTLYTKP----GCHL-CDEAKEILEEVAA------------EFPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIR--QF   61 (81)
T ss_dssp             EEEEE-S----SSHH-HHHHHHHHHHCCT------------TSTCEEEEEETTTTHHHHHHSCT-STSEEEETT-G--GG
T ss_pred             EEEEcCC----CCCh-HHHHHHHHHHHHh------------hcCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcc--cc
Confidence            6788888    8999 7988888776542            23588889999999999999996 89997665432  11


Q ss_pred             CCccccccccccccCHHHHHHHHH
Q 048343          152 KDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      .   .. .......+.+++.+||+
T Consensus        62 ~---~~-~~~~~~~d~~~L~~~L~   81 (81)
T PF05768_consen   62 K---EQ-EELKWRFDEEQLRAWLE   81 (81)
T ss_dssp             C---TS-EEEESSB-HHHHHHHHH
T ss_pred             c---cc-ceeCCCCCHHHHHHHhC
Confidence            1   00 11134578999999874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG3356 consensus Predicted membrane protein [Function unknown]

Probab=97.17  E-value=0.00016  Score=58.89  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=75.2

Q ss_pred             cccchhHHHHHHHHHHHhhcchhhhhcCCCCceecCCCCCCc---eEEEEcCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 048343          221 LHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNK---LVFFYQGSGMQLGAEGFAVGFLYTIVGLLLALMTH  297 (347)
Q Consensus       221 l~~k~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~---i~yf~~g~~~QfgiE~~iv~~lY~~la~~~i~L~~  297 (347)
                      +.++..-..+-++.+++.++|..|..|-.||=++...|..|.   +.|.++.-..||-+|+..-|+++..=+++++.|-.
T Consensus        26 lps~mtv~alivvsyflv~~g~iydvivepp~igs~~d~~g~~rpv~fla~rvngqyimeglas~flf~lgglg~imld~  105 (147)
T KOG3356|consen   26 LPSPMTVYALIVVSYFLVTGGIIYDVIVEPPSIGSMTDEHGHQRPVAFLAGRVNGQYIMEGLASSFLFTLGGLGFIMLDR  105 (147)
T ss_pred             CCCchHHHHHHHHHHHHhcccEEEEEEecCCCCCcccccCCcCcceEEEeccccceeeehhhcccceEeecCcEEEEEec
Confidence            345566666777889999999999999999999865543354   46666667999999999999998887777776654


Q ss_pred             cc-ccccCccchhHHHHHHHHHHHHHHHHHhhhh--hccC-CC
Q 048343          298 GL-VRVKSVSIQRWVMIVSLLISFWAVNKVIYLD--NWKT-GY  336 (347)
Q Consensus       298 ~~-p~~~~~~~~~~~~~~~~~~~f~~~s~l~s~~--~~K~-~y  336 (347)
                      .. |++  ++..|+ .++.+++..++.|++++..  ++|- ||
T Consensus       106 a~~~n~--~k~~r~-~~~~~g~~~vlls~~ma~vfmrmklpgy  145 (147)
T KOG3356|consen  106 ANAPNI--PKLNRF-LLLFIGFVCVLLSFFMARVFMRMKLPGY  145 (147)
T ss_pred             ccCCCc--HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence            22 222  222222 2333345555556665542  4454 55

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.15  E-value=0.00089  Score=49.09  Aligned_cols=52  Identities=6%  Similarity=0.128  Sum_probs=40.3

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRLV  144 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~f  144 (347)
                      +.+|+++    ||++ |+..++.+++                .++-|..+|++++++    +.+.+++.++|++++.
T Consensus         2 i~lf~~~----~C~~-C~~~~~~l~~----------------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~   57 (74)
T TIGR02196         2 VKVYTTP----WCPP-CKKAKEYLTS----------------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG   57 (74)
T ss_pred             EEEEcCC----CChh-HHHHHHHHHH----------------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence            4678888    8999 7988766543                146788899987654    5667999999999985

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.10  E-value=0.0035  Score=55.03  Aligned_cols=107  Identities=10%  Similarity=0.018  Sum_probs=64.9

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEE--------------------------E
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYL--------------------------E  122 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~v--------------------------D  122 (347)
                      .+||.|| ++    ||+. |..-.|+++++++.|....   .    .++...+                          =
T Consensus        31 ~vvl~F~~~~----~c~~-C~~~l~~l~~~~~~~~~~~---v----~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l   98 (173)
T cd03015          31 WVVLFFYPLD----FTFV-CPTEIIAFSDRYEEFKKLN---A----EVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLL   98 (173)
T ss_pred             EEEEEEECCC----CCCc-CHHHHHHHHHHHHHHHHCC---C----EEEEEecCCHHHHHHHHHhhhhhCCccCcceeEE
Confidence            5888888 55    8999 7999999999999885421   0    1111111                          1


Q ss_pred             ccCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          123 FKESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       123 ~~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                      .|...++.+.|++.      ..|+.+++.+. |...   ... ......++.+++.+.|++.-...--...-|.||.
T Consensus        99 ~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~-G~I~---~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~  171 (173)
T cd03015          99 ADPKKKISRDYGVLDEEEGVALRGTFIIDPE-GIIR---HITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWK  171 (173)
T ss_pred             ECCchhHHHHhCCccccCCceeeEEEEECCC-CeEE---EEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence            23455788889986      57889998875 5432   111 0001235677788888654332212344577774

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.06  E-value=0.0048  Score=53.90  Aligned_cols=94  Identities=11%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC------------------------
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE------------------------  125 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~------------------------  125 (347)
                      .+|++|+++    ||+. |....|++.++.+++.+         .++.|..+..+.                        
T Consensus        27 ~~ll~f~~t----~Cp~-c~~~~~~l~~l~~~~~~---------~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~   92 (171)
T cd02969          27 ALVVMFICN----HCPY-VKAIEDRLNRLAKEYGA---------KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFP   92 (171)
T ss_pred             EEEEEEECC----CCcc-HHHHHHHHHHHHHHHhh---------CCeEEEEEecCccccccccCHHHHHHHHHHCCCCce
Confidence            688999988    8999 68888999999988742         245555555432                        


Q ss_pred             -----CcchHhHcCCCCCceEEEEcCCCCCCCCcccccc----ccccccCHHHHHHHHHhhcC
Q 048343          126 -----SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME----QGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 -----~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~----~~~~~~~a~~l~~fi~~~t~  179 (347)
                           ...+.+.|++...|+.+++.|+ |+.. -.....    .+....+.+++.+-|++.+.
T Consensus        93 ~l~D~~~~~~~~~~v~~~P~~~lid~~-G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  153 (171)
T cd02969          93 YLLDETQEVAKAYGAACTPDFFLFDPD-GKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLA  153 (171)
T ss_pred             EEECCchHHHHHcCCCcCCcEEEECCC-CeEE-EeecccCCcccccccccHHHHHHHHHHHHc
Confidence                 2356778999999999999875 4432 011111    11122345666666665544

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.05  E-value=0.003  Score=59.41  Aligned_cols=86  Identities=13%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------CcchHhHcCCCCCce
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------SQSSFALFAVNSLPH  140 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------~~~lf~~~~I~svP~  140 (347)
                      +-+++|+..    .|+. |+.+.|..+.+|+.|.          =.|..+.+|=.-         +...++++|++.+|+
T Consensus       152 ~gL~fFy~~----~C~~-C~~~apil~~fa~~yg----------i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa  216 (256)
T TIGR02739       152 YGLFFFYRG----KSPI-SQKMAPVIQAFAKEYG----------ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA  216 (256)
T ss_pred             eeEEEEECC----CCch-hHHHHHHHHHHHHHhC----------CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence            567777776    6999 8999999999999872          135555555331         145889999999999


Q ss_pred             EEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          141 IRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       141 l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      +++..|++++..      ...-|..+.++|.+-+-.
T Consensus       217 l~Lv~~~t~~~~------pv~~G~iS~deL~~Ri~~  246 (256)
T TIGR02739       217 LYLVNPKSQKMS------PLAYGFISQDELKERILN  246 (256)
T ss_pred             EEEEECCCCcEE------EEeeccCCHHHHHHHHHH
Confidence            999998643321      122345677777665433

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=96.96  E-value=0.0043  Score=52.37  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=77.8

Q ss_pred             CeEEcChhhH-HHHhcccCCCCCceEEEEEecCCCCCCChhh-cccchHHHHHHHHHhhhcCCCCCCCCCc-eEEEEEEc
Q 048343           47 GVIHLNDQLV-SRFLTSTKTPRPYSILIFFDAHQLHNKPELH-LQELRNEFSLVASSFIANNVDNPSSRGK-LFFCYLEF  123 (347)
Q Consensus        47 ~VI~L~~~nf-~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~c-C~~l~pefe~vA~s~~~~~p~~~~~~~~-v~F~~vD~  123 (347)
                      -|++|++++. ++..   .+  .-..++.|--.  ...|..- =.+..+.++++|+.+.          ++ +.|+.+|.
T Consensus         3 ~~~~l~~~~~~~~~C---~~--~~~C~i~~l~~--~~d~~~e~~~~~~~~l~~vAk~~k----------gk~i~Fv~vd~   65 (130)
T cd02983           3 EIIELTSEDVFEETC---EE--KQLCIIAFLPH--ILDCQASCRNKYLEILKSVAEKFK----------KKPWGWLWTEA   65 (130)
T ss_pred             ceEEecCHHHHHhhc---cC--CCeEEEEEcCc--cccCCHHHHHHHHHHHHHHHHHhc----------CCcEEEEEEeC
Confidence            4899998766 4454   22  22455555221  1123321 1467889999999883          35 99999999


Q ss_pred             cCCcchHhHcCCCC--CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          124 KESQSSFALFAVNS--LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       124 ~~~~~lf~~~~I~s--vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++...+.+.|||.+  .|++.++.+.++  +     +..+++..+++.+.+|+++...-+.
T Consensus        66 ~~~~~~~~~fgl~~~~~P~v~i~~~~~~--K-----Y~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          66 GAQLDLEEALNIGGFGYPAMVAINFRKM--K-----FATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             cccHHHHHHcCCCccCCCEEEEEecccC--c-----cccccCccCHHHHHHHHHHHHcCCc
Confidence            99988999999965  999999987421  2     1114567899999999999876544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.0028  Score=52.31  Aligned_cols=66  Identities=6%  Similarity=-0.023  Sum_probs=51.0

Q ss_pred             eEEEEEecCC-C---CCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-------chHhHcCC-CC
Q 048343           70 SILIFFDAHQ-L---HNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-------SSFALFAV-NS  137 (347)
Q Consensus        70 ~vvV~fTA~~-~---~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-------~lf~~~~I-~s  137 (347)
                      .+.|+|+++. +   |.|||. |...+|.+.++-+.          ...++-|..+|+.+.+       ..=...++ +.
T Consensus        27 ~ifvlF~gskd~~tGqSWCPd-CV~AEPvi~~alk~----------ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~   95 (128)
T KOG3425|consen   27 TIFVLFLGSKDDTTGQSWCPD-CVAAEPVINEALKH----------APEDVHFVHVYVGNRPYWKDPANPFRKDPGILTA   95 (128)
T ss_pred             eEEEEEecccCCCCCCcCCch-HHHhhHHHHHHHHh----------CCCceEEEEEEecCCCcccCCCCccccCCCceee
Confidence            3889999986 3   689999 89999999987652          2457999999998753       22334555 99


Q ss_pred             CceEEEEcC
Q 048343          138 LPHIRLVGP  146 (347)
Q Consensus       138 vP~l~~fpp  146 (347)
                      |||++-+..
T Consensus        96 vPTLlrw~~  104 (128)
T KOG3425|consen   96 VPTLLRWKR  104 (128)
T ss_pred             cceeeEEcC
Confidence            999999974

>TIGR02180 GRX_euk Glutaredoxin

Probab=96.88  E-value=0.0016  Score=49.49  Aligned_cols=55  Identities=7%  Similarity=0.085  Sum_probs=39.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-----~lf~~~~I~svP~l~~  143 (347)
                      |+.|+++    ||+. |+++++.+++..  .          .++..+..+|.++++     .+.+..+..++|++++
T Consensus         1 V~~f~~~----~Cp~-C~~~~~~L~~~~--i----------~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i   60 (84)
T TIGR02180         1 VVVFSKS----YCPY-CKKAKEILAKLN--V----------KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI   60 (84)
T ss_pred             CEEEECC----CChh-HHHHHHHHHHcC--C----------CCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            4678888    8999 799998888754  1          123567777776543     2666779999999853

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=96.80  E-value=0.0022  Score=47.77  Aligned_cols=53  Identities=6%  Similarity=0.140  Sum_probs=38.4

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH-----cCCCCCceEEEEcC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL-----FAVNSLPHIRLVGP  146 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~-----~~I~svP~l~~fpp  146 (347)
                      +++|+++    ||++ |+.+++.+++..                +-|-.+|++++++..+.     ++..++|++ ++..
T Consensus         2 v~ly~~~----~C~~-C~~~~~~L~~~~----------------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~   59 (77)
T TIGR02200         2 ITVYGTT----WCGY-CAQLMRTLDKLG----------------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFAD   59 (77)
T ss_pred             EEEEECC----CChh-HHHHHHHHHHcC----------------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECC
Confidence            5678898    8999 799888765432                33457888877655555     389999998 4653

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=96.73  E-value=0.0083  Score=55.81  Aligned_cols=30  Identities=23%  Similarity=0.128  Sum_probs=26.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ..+||.|||+    ||++ |+.-.|+++++.+.|.
T Consensus       100 K~vvl~FwAs----wCp~-c~~e~p~L~~L~~~~~  129 (236)
T PLN02399        100 KVLLIVNVAS----KCGL-TSSNYSELSHLYEKYK  129 (236)
T ss_pred             CeEEEEEEcC----CCcc-hHHHHHHHHHHHHHHh
Confidence            4789999998    8999 7988999999999884

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.63  E-value=0.0091  Score=55.90  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------CcchHhHcCCCCCce
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------SQSSFALFAVNSLPH  140 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------~~~lf~~~~I~svP~  140 (347)
                      +-+++|+..    .|+. |+++.|..+.+|+.|.          =.|.-+.+|=.-         +....+++|++.+|+
T Consensus       145 ~GL~fFy~s----~Cp~-C~~~aPil~~fa~~yg----------~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PA  209 (248)
T PRK13703        145 YGLMFFYRG----QDPI-DGQLAQVINDFRDTYG----------LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPA  209 (248)
T ss_pred             ceEEEEECC----CCch-hHHHHHHHHHHHHHhC----------CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccce
Confidence            677888887    6999 8999999999999872          246666665321         224678999999999


Q ss_pred             EEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          141 IRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       141 l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +++..|++++..      ...-|..+.++|.+-+-
T Consensus       210 l~Lv~~~t~~~~------pv~~G~iS~deL~~Ri~  238 (248)
T PRK13703        210 LMLVDPKSGSVR------PLSYGFITQDDLAKRFL  238 (248)
T ss_pred             EEEEECCCCcEE------EEeeccCCHHHHHHHHH
Confidence            999998753321      12224466777765443

>PTZ00056 glutathione peroxidase; Provisional

Probab=96.61  E-value=0.0088  Score=54.09  Aligned_cols=30  Identities=20%  Similarity=0.172  Sum_probs=26.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ..++|.|||+    ||++ |++-.|+++++.+.|.
T Consensus        40 kvvlv~fwAs----wC~~-C~~e~p~L~~l~~~~~   69 (199)
T PTZ00056         40 KVLMITNSAS----KCGL-TKKHVDQMNRLHSVFN   69 (199)
T ss_pred             CEEEEEEECC----CCCC-hHHHHHHHHHHHHHHh
Confidence            3789999998    8999 7999999999999884

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.58  E-value=0.0044  Score=47.86  Aligned_cols=76  Identities=8%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cchHhHcC--CCCCceEEEEc
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QSSFALFA--VNSLPHIRLVG  145 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~lf~~~~--I~svP~l~~fp  145 (347)
                      ++.|+.+    ||+. |++....+++++.++           +++.+..+|+++.    .++.+..+  .+++|++++  
T Consensus         3 v~iy~~~----~C~~-C~~a~~~L~~l~~~~-----------~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--   64 (85)
T PRK11200          3 VVIFGRP----GCPY-CVRAKELAEKLSEER-----------DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--   64 (85)
T ss_pred             EEEEeCC----CChh-HHHHHHHHHhhcccc-----------cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--
Confidence            5678887    8999 799999999887542           3578889999864    25665555  489999873  


Q ss_pred             CCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      .  |+..          +  .-+++.++++++.|
T Consensus        65 ~--g~~i----------g--g~~~~~~~~~~~~~   84 (85)
T PRK11200         65 D--QKHI----------G--GCTDFEAYVKENLG   84 (85)
T ss_pred             C--CEEE----------c--CHHHHHHHHHHhcc
Confidence            2  2221          1  24667788777665

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=96.56  E-value=0.0094  Score=49.31  Aligned_cols=107  Identities=8%  Similarity=0.113  Sum_probs=71.6

Q ss_pred             hHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--CcchHhH
Q 048343           55 LVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSSFAL  132 (347)
Q Consensus        55 nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~lf~~  132 (347)
                      .|++.+. ....+...++|+++++....||.. |++.-.. ++|.+ +.         +++..+...|+++  +.++.+.
T Consensus         5 s~~eAl~-~ak~e~K~llVylhs~~~~~~~~f-c~~~l~~-~~v~~-~l---------n~~fv~w~~dv~~~eg~~la~~   71 (116)
T cd02991           5 TYSQALN-DAKQELRFLLVYLHGDDHQDTDEF-CRNTLCA-PEVIE-YI---------NTRMLFWACSVAKPEGYRVSQA   71 (116)
T ss_pred             cHHHHHH-HHHhhCCEEEEEEeCCCCccHHHH-HHHHcCC-HHHHH-HH---------HcCEEEEEEecCChHHHHHHHH
Confidence            4555542 122234589999999977778999 6654322 22332 22         2358889999985  4589999


Q ss_pred             cCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          133 FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       133 ~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++.|++.+.-|..++.    ....+..|..+++++.+.+++..
T Consensus        72 l~~~~~P~~~~l~~~~~~~----~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          72 LRERTYPFLAMIMLKDNRM----TIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             hCCCCCCEEEEEEecCCce----EEEEEEeCCCCHHHHHHHHHHHH
Confidence            9999999999997643221    22344567788999988887654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=96.45  E-value=0.014  Score=49.26  Aligned_cols=72  Identities=8%  Similarity=0.007  Sum_probs=50.6

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-------------------CCcc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-------------------ESQS  128 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-------------------~~~~  128 (347)
                      ...++|.||++-   ||++ |+.-.|.++++++.|...       +-++.....|-+                   ++.+
T Consensus        28 gk~~vv~f~~~~---~Cp~-C~~~~p~l~~l~~~~~~~-------~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~   96 (146)
T PF08534_consen   28 GKPVVVNFWASA---WCPP-CRKELPYLNELQEKYKDK-------GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGA   96 (146)
T ss_dssp             TSEEEEEEESTT---TSHH-HHHHHHHHHHHHHHHHTT-------TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSH
T ss_pred             CCeEEEEEEccC---CCCc-chhhhhhHHhhhhhhccC-------ceEEEEecccCCHHHHHHHHhhCCCceEEechHHH
Confidence            336889999973   7999 799999999998887532       112222222211                   3457


Q ss_pred             hHhHcCCC---------CCceEEEEcCCCCCC
Q 048343          129 SFALFAVN---------SLPHIRLVGPDAKSL  151 (347)
Q Consensus       129 lf~~~~I~---------svP~l~~fpp~~g~~  151 (347)
                      +.+++++.         .+|+.+++-++ |..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~P~~~lId~~-G~V  127 (146)
T PF08534_consen   97 LAKALGVTIMEDPGNGFGIPTTFLIDKD-GKV  127 (146)
T ss_dssp             HHHHTTCEEECCTTTTSSSSEEEEEETT-SBE
T ss_pred             HHHHhCCccccccccCCeecEEEEEECC-CEE
Confidence            88999998         99999998875 543

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=96.45  E-value=0.0063  Score=52.81  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=51.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      .+.+.++|.|.    ||++ ||+|-|...++=+...++++     .=.|.|+.-|=++.                     
T Consensus        33 gKvV~lyFsA~----wC~p-CR~FTP~Lk~fYe~l~~~~~-----~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~  102 (157)
T KOG2501|consen   33 GKVVGLYFSAH----WCPP-CRDFTPILKDFYEELKDNAA-----PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDD  102 (157)
T ss_pred             CcEEEEEEEEE----ECCc-hhhCCchHHHHHHHHHhcCC-----ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCH
Confidence            45777889887    9999 89999998887666544321     11366666665432                     


Q ss_pred             --cchHhHcCCCCCceEEEEcCC
Q 048343          127 --QSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       127 --~~lf~~~~I~svP~l~~fpp~  147 (347)
                        +++.++|++.++|.+.+..|.
T Consensus       103 ~~~~l~~ky~v~~iP~l~i~~~d  125 (157)
T KOG2501|consen  103 LIQKLSEKYEVKGIPALVILKPD  125 (157)
T ss_pred             HHHHHHHhcccCcCceeEEecCC
Confidence              245668999999999999986

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.38  E-value=0.037  Score=43.27  Aligned_cols=68  Identities=19%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             cccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCH
Q 048343           88 LQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMA  167 (347)
Q Consensus        88 C~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a  167 (347)
                      |.+...+|.++|+..+          +.+.|+.++   +++++++++++. |++.+|.|.. +.      ...|++..+.
T Consensus        29 ~~~~~~~f~~~A~~~r----------~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~-~~------~~~y~g~~~~   87 (97)
T cd02981          29 ESEEYKTFEKVAESLR----------DDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE-EE------PVEYDGEFTE   87 (97)
T ss_pred             CcHHHHHHHHHHHhcc----------cCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc-cC------CccCCCCCCH
Confidence            4567899999998863          247777666   456777787765 9999998741 11      1345666778


Q ss_pred             HHHHHHHHh
Q 048343          168 ESMADFVQS  176 (347)
Q Consensus       168 ~~l~~fi~~  176 (347)
                      +.|.+||..
T Consensus        88 ~~l~~fi~~   96 (97)
T cd02981          88 ESLVEFIKD   96 (97)
T ss_pred             HHHHHHHHh
Confidence            999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=96.16  E-value=0.024  Score=50.74  Aligned_cols=95  Identities=9%  Similarity=0.114  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHhcC------CC-CeEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           32 DLVSELLNLQSQS------EA-GVIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        32 ~~~~~L~~l~~~s------~~-~VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      +|.++|.+.+.+.      .. ..-++. ..+|=+.+  +...   -+|.-|+-+.    -.. |+-+...++.+|+.+-
T Consensus        45 qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~--~kS~---kVVcHFY~~~----f~R-CKimDkhLe~LAk~h~  114 (211)
T KOG1672|consen   45 QRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEV--KKSE---KVVCHFYRPE----FFR-CKIMDKHLEILAKRHV  114 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHh--hcCc---eEEEEEEcCC----Ccc-eehHHHHHHHHHHhcc
Confidence            5555555554322      11 266776 45676666  2333   4888999873    345 8999999999998752


Q ss_pred             hcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343          104 ANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       104 ~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                                 .-.|.+||.+..|=+..+++|..+|++.+|..+
T Consensus       115 -----------eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g  147 (211)
T KOG1672|consen  115 -----------ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNG  147 (211)
T ss_pred             -----------cceEEEEecccCceeeeeeeeeEeeeEEEEEcC
Confidence                       358999999999999999999999999999974

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.15  E-value=0.016  Score=41.53  Aligned_cols=51  Identities=8%  Similarity=0.192  Sum_probs=37.1

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~  143 (347)
                      |++|+.+    +|+. |+..+..++        +        .++-|-.+|+++.+    ++.+..|..++|++++
T Consensus         1 V~vy~~~----~C~~-C~~~~~~L~--------~--------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKP----GCPY-CKKAKEFLD--------E--------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEEST----TSHH-HHHHHHHHH--------H--------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcC----CCcC-HHHHHHHHH--------H--------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            5678887    8999 677665542        2        25788999999864    3333349999999986

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=96.15  E-value=0.015  Score=44.01  Aligned_cols=67  Identities=10%  Similarity=0.104  Sum_probs=45.2

Q ss_pred             CChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccc
Q 048343           83 KPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD  162 (347)
Q Consensus        83 ~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~  162 (347)
                      +|+. |..+....+++++..            ++-.-..|.++.+++ ++||+.++|++++ .   |+.        .+.
T Consensus         9 ~C~~-C~~~~~~~~~~~~~~------------~i~~ei~~~~~~~~~-~~ygv~~vPalvI-n---g~~--------~~~   62 (76)
T PF13192_consen    9 GCPY-CPELVQLLKEAAEEL------------GIEVEIIDIEDFEEI-EKYGVMSVPALVI-N---GKV--------VFV   62 (76)
T ss_dssp             SCTT-HHHHHHHHHHHHHHT------------TEEEEEEETTTHHHH-HHTT-SSSSEEEE-T---TEE--------EEE
T ss_pred             CCCC-cHHHHHHHHHHHHhc------------CCeEEEEEccCHHHH-HHcCCCCCCEEEE-C---CEE--------EEE
Confidence            6999 798888888887764            245566777777777 9999999999955 2   222        122


Q ss_pred             c-ccCHHHHHHHHH
Q 048343          163 F-ARMAESMADFVQ  175 (347)
Q Consensus       163 ~-~~~a~~l~~fi~  175 (347)
                      | ..+.+++.+||+
T Consensus        63 G~~p~~~el~~~l~   76 (76)
T PF13192_consen   63 GRVPSKEELKELLE   76 (76)
T ss_dssp             SS--HHHHHHHHHH
T ss_pred             ecCCCHHHHHHHhC
Confidence            3 345677777763

...

>TIGR03137 AhpC peroxiredoxin

Probab=96.13  E-value=0.031  Score=49.86  Aligned_cols=91  Identities=10%  Similarity=0.063  Sum_probs=56.7

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-----------------------ccC
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-----------------------FKE  125 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-----------------------~~~  125 (347)
                      .+||.|+ +.    ||+. |..-.|++++..+.+.+.       +-+++.+..|                       .|.
T Consensus        33 ~vvl~F~p~~----~cp~-C~~el~~l~~~~~~~~~~-------gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~  100 (187)
T TIGR03137        33 WSVFFFYPAD----FTFV-CPTELEDLADKYAELKKL-------GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDP  100 (187)
T ss_pred             EEEEEEECCC----cCCc-CHHHHHHHHHHHHHHHhc-------CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECC
Confidence            5888888 76    8999 799999999998888532       1123333322                       123


Q ss_pred             CcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          126 SQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       126 ~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      ..++.+.||+.      ..|+.+++.+. |... . .........+.++++.+.|+
T Consensus       101 ~~~~a~~~gv~~~~~g~~~p~tfiID~~-G~I~-~-~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       101 TGVLTRNFGVLIEEAGLADRGTFVIDPE-GVIQ-A-VEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             ccHHHHHhCCcccCCCceeeEEEEECCC-CEEE-E-EEEeCCCCCCCHHHHHHHHH
Confidence            45788899986      46888888764 4432 0 00011112356777777664

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PLN02412 probable glutathione peroxidase

Probab=96.12  E-value=0.031  Score=48.98  Aligned_cols=30  Identities=20%  Similarity=0.161  Sum_probs=26.4

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ..+||.|||+    ||++ |++-.|+++++.+.|.
T Consensus        30 k~vlv~f~a~----~C~~-c~~e~~~l~~l~~~~~   59 (167)
T PLN02412         30 KVLLIVNVAS----KCGL-TDSNYKELNVLYEKYK   59 (167)
T ss_pred             CEEEEEEeCC----CCCC-hHHHHHHHHHHHHHHh
Confidence            3688999998    8999 8988999999999885

>PRK15000 peroxidase; Provisional

Probab=96.06  E-value=0.039  Score=49.92  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC--------------C---ceEEEEEEccCCcch
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR--------------G---KLFFCYLEFKESQSS  129 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~--------------~---~v~F~~vD~~~~~~l  129 (347)
                      ++|++|++.+   ||+. |..-.|+|.+.++++.+..-.  +.+ ++              .   ++.|- +-.|.+.++
T Consensus        36 ~vvL~F~p~~---~t~v-C~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fp-llsD~~~~i  110 (200)
T PRK15000         36 TTVLFFWPMD---FTFV-CPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYA-MVADVKREI  110 (200)
T ss_pred             EEEEEEECCC---CCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCce-EEECCCcHH
Confidence            7899999976   8999 799999999999988642100  000 00              0   11111 223445678


Q ss_pred             HhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC-CCCcccCCCCch
Q 048343          130 FALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL-TVGPIHHPPLLS  192 (347)
Q Consensus       130 f~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~-~i~~i~~p~~~~  192 (347)
                      .+.||+.      ++|..+++.|. |...  .........+++.+++.+.++..--. +. ...-|-||.
T Consensus       111 a~~ygv~~~~~g~~~r~tfiID~~-G~I~--~~~~~~~~~gr~~~eilr~l~al~~~~~~-~~~~p~~w~  176 (200)
T PRK15000        111 QKAYGIEHPDEGVALRGSFLIDAN-GIVR--HQVVNDLPLGRNIDEMLRMVDALQFHEEH-GDVCPAQWE  176 (200)
T ss_pred             HHHcCCccCCCCcEEeEEEEECCC-CEEE--EEEecCCCCCCCHHHHHHHHHHhhhHHhc-CCCcCCCCC
Confidence            8889987      68999999875 4542  01111112246778777777542110 01 123477874

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.94  E-value=0.012  Score=54.65  Aligned_cols=92  Identities=11%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHH----hhhcCCC-C--C-----------C-C----------CCc--eE
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASS----FIANNVD-N--P-----------S-S----------RGK--LF  117 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s----~~~~~p~-~--~-----------~-~----------~~~--v~  117 (347)
                      -..++.||-+    .|+. |+++.++.+++.+.    +....|- +  .           + |          ++.  -.
T Consensus       108 k~~I~vFtDp----~Cpy-Ckkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        108 KHVITVFTDI----TCGY-CHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CEEEEEEECC----CChH-HHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            4577889988    7999 89999999887541    0011221 0  0           0 0          111  11


Q ss_pred             EEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          118 FCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       118 F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .+..+++++.++.+++||++.|+++ ++.|  ..         ..|..++++|.++|++.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G--~~---------~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG--TL---------VPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCC--eE---------eeCCCCHHHHHHHHHHc
Confidence            3455677788999999999999999 6543  22         13557889999998764

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=95.86  E-value=0.055  Score=46.19  Aligned_cols=30  Identities=7%  Similarity=0.015  Sum_probs=24.7

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .++|.|++++   ||+. |....+.++++++.+.
T Consensus        32 ~~ll~f~~~~---~~p~-C~~~~~~l~~~~~~~~   61 (154)
T PRK09437         32 RVLVYFYPKA---MTPG-CTVQACGLRDNMDELK   61 (154)
T ss_pred             CEEEEEECCC---CCCc-hHHHHHHHHHHHHHHH
Confidence            5888899875   7888 7888888888888874

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.85  E-value=0.019  Score=41.82  Aligned_cols=51  Identities=8%  Similarity=0.147  Sum_probs=35.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc----CCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF----AVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~----~I~svP~l~~  143 (347)
                      +++|+++    ||+. |+++.+.+++                .++-|..+|++++++..+++    +..++|++++
T Consensus         2 v~l~~~~----~c~~-c~~~~~~l~~----------------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKP----DCPY-CKATKRFLDE----------------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCC----CChh-HHHHHHHHHH----------------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence            4678887    8999 7987665543                13556678888765444433    7899999986

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=95.79  E-value=0.03  Score=47.97  Aligned_cols=28  Identities=14%  Similarity=0.067  Sum_probs=24.2

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .++|.|||+    ||+ | +.-.|+++++.+.|.
T Consensus        24 ~vvl~fwat----wC~-C-~~e~p~l~~l~~~~~   51 (152)
T cd00340          24 VLLIVNVAS----KCG-F-TPQYEGLEALYEKYK   51 (152)
T ss_pred             EEEEEEEcC----CCC-c-hHHHHHHHHHHHHhc
Confidence            689999999    898 6 777799999998884

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=95.68  E-value=0.021  Score=48.18  Aligned_cols=79  Identities=13%  Similarity=0.159  Sum_probs=44.4

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS  128 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~  128 (347)
                      .+++++.-+.+-   +..+++.++ .|+.+    ||+- |...-|.+.++|+.-           .++-+-.+.-|++++
T Consensus        26 ~~l~~~~~~~l~---~~~~~~~il-vi~e~----WCgD-~~~~vP~l~kiae~~-----------p~i~~~~i~rd~~~e   85 (129)
T PF14595_consen   26 FQLSEEQIEKLK---SIQKPYNIL-VITET----WCGD-CARNVPVLAKIAEAN-----------PNIEVRIILRDENKE   85 (129)
T ss_dssp             HH--HHHHHHHH---T--S-EEEE-EE--T----T-HH-HHHHHHHHHHHHHH------------TTEEEEEE-HHHHHH
T ss_pred             cCCCHHHHHHHH---hcCCCcEEE-EEECC----Cchh-HHHHHHHHHHHHHhC-----------CCCeEEEEEecCChh
Confidence            456776666554   445666544 57777    9999 899999999999852           134444455555544


Q ss_pred             hHh---HcCCCCCceEEEEcCC
Q 048343          129 SFA---LFAVNSLPHIRLVGPD  147 (347)
Q Consensus       129 lf~---~~~I~svP~l~~fpp~  147 (347)
                      +..   ..|.++||+++++..+
T Consensus        86 l~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   86 LMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             HTTTTTT-SS--SSEEEEE-TT
T ss_pred             HHHHHHhCCCeecCEEEEEcCC
Confidence            332   3688999999999753

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=95.59  E-value=0.075  Score=45.53  Aligned_cols=29  Identities=7%  Similarity=-0.059  Sum_probs=26.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .+||.|+|+    ||++ |+.-.|+++++.+.|.
T Consensus        24 ~vvv~~~as----~C~~-c~~~~~~l~~l~~~~~   52 (153)
T TIGR02540        24 VSLVVNVAS----ECGF-TDQNYRALQELHRELG   52 (153)
T ss_pred             EEEEEEeCC----CCCc-hhhhHHHHHHHHHHHh
Confidence            578889999    8999 7999999999999984

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.55  E-value=0.02  Score=43.30  Aligned_cols=53  Identities=11%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-c----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-Q----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-~----~lf~~~~I~svP~l~~  143 (347)
                      |++|+++    ||+. |+.+.+.++++..              +..+..+|.++. .    .+-+..|..++|.+++
T Consensus         2 v~~y~~~----~Cp~-C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~   59 (82)
T cd03419           2 VVVFSKS----YCPY-CKRAKSLLKELGV--------------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI   59 (82)
T ss_pred             EEEEEcC----CCHH-HHHHHHHHHHcCC--------------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            4678887    8999 7988887776432              345666776654 2    3456679999999843

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK13190 putative peroxiredoxin; Provisional

Probab=95.42  E-value=0.076  Score=48.05  Aligned_cols=114  Identities=11%  Similarity=0.079  Sum_probs=65.7

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC---------------C-ceEEEEEEccCCcchH
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR---------------G-KLFFCYLEFKESQSSF  130 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~---------------~-~v~F~~vD~~~~~~lf  130 (347)
                      .++.+|+++    ||+. |..-.+++++..+++.+..-.  +.+ ++               + ++-|-. =.|.+.++.
T Consensus        30 vvL~~~p~~----~cp~-C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPl-l~D~~~~ia  103 (202)
T PRK13190         30 VLLFSHPAD----FTPV-CTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPV-IADIDKELA  103 (202)
T ss_pred             EEEEEEcCC----CCCC-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEE-EECCChHHH
Confidence            334467887    8999 798889999988888642100  000 00               0 122221 123456889


Q ss_pred             hHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          131 ALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       131 ~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                      +.||+.      ++|+.+++.|+ |...  ....+....+++.+++.+.|++..-..=...--|-||.
T Consensus       104 ~~ygv~~~~~g~~~p~~fiId~~-G~I~--~~~~~~~~~gr~~~ellr~l~~l~~~~~~~~~~p~~w~  168 (202)
T PRK13190        104 REYNLIDENSGATVRGVFIIDPN-QIVR--WMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQ  168 (202)
T ss_pred             HHcCCccccCCcEEeEEEEECCC-CEEE--EEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCC
Confidence            999985      58999999875 4432  11112223467888888888654321101234477774

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=95.40  E-value=0.056  Score=44.97  Aligned_cols=31  Identities=13%  Similarity=0.240  Sum_probs=25.2

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      .+++.|++.+   ||+. |....|++.++.+.+.+
T Consensus        25 ~~ll~f~~~~---~cp~-C~~~~~~l~~~~~~~~~   55 (140)
T cd03017          25 PVVLYFYPKD---DTPG-CTKEACDFRDLYEEFKA   55 (140)
T ss_pred             cEEEEEeCCC---CCCc-hHHHHHHHHHHHHHHHH
Confidence            5788888643   8999 89999999999988753

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=95.37  E-value=0.053  Score=44.00  Aligned_cols=44  Identities=9%  Similarity=0.055  Sum_probs=33.3

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..++|.|+++.   ||+. |+.-.++++++.+.+.+         .++.+.-+..++
T Consensus        26 k~~vl~f~~~~---~c~~-c~~~l~~l~~~~~~~~~---------~~~~vi~is~d~   69 (124)
T PF00578_consen   26 KPVVLFFWPTA---WCPF-CQAELPELNELYKKYKD---------KGVQVIGISTDD   69 (124)
T ss_dssp             SEEEEEEESTT---TSHH-HHHHHHHHHHHHHHHHT---------TTEEEEEEESSS
T ss_pred             CcEEEEEeCcc---Cccc-cccchhHHHHHhhhhcc---------ceEEeeeccccc
Confidence            36888888874   8999 79999999999988852         246666666654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=95.32  E-value=0.074  Score=46.22  Aligned_cols=73  Identities=16%  Similarity=0.123  Sum_probs=54.2

Q ss_pred             ccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccc-cCH
Q 048343           89 QELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMA  167 (347)
Q Consensus        89 ~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a  167 (347)
                      .+...+|+++|+.+.          +.+.|+.++   +++++++++++. |++++|+++. +      ....|++. .+.
T Consensus         6 ~~~~~~f~~~A~~~~----------~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~-~------~~~~y~~~~~~~   64 (184)
T PF13848_consen    6 SELFEIFEEAAEKLK----------GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFD-E------KPVVYDGDKFTP   64 (184)
T ss_dssp             SHHHHHHHHHHHHHT----------TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTT-T------SEEEESSSTTSH
T ss_pred             cHHHHHHHHHHHhCc----------CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCC-C------CceecccccCCH
Confidence            456789999999873          358888887   667999999999 9999999742 1      12344554 689


Q ss_pred             HHHHHHHHhhcCCCC
Q 048343          168 ESMADFVQSRTKLTV  182 (347)
Q Consensus       168 ~~l~~fi~~~t~~~i  182 (347)
                      ++|.+||++..--.+
T Consensus        65 ~~l~~fI~~~~~P~v   79 (184)
T PF13848_consen   65 EELKKFIKKNSFPLV   79 (184)
T ss_dssp             HHHHHHHHHHSSTSC
T ss_pred             HHHHHHHHHhccccc
Confidence            999999988754333

...

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=95.30  E-value=0.033  Score=41.54  Aligned_cols=50  Identities=8%  Similarity=0.130  Sum_probs=36.5

Q ss_pred             EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc---CCCCCceEEE
Q 048343           73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF---AVNSLPHIRL  143 (347)
Q Consensus        73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~---~I~svP~l~~  143 (347)
                      .+|+.+    +|+. |+..+.-+++                .++-|-.+|++++++.++++   |..++|.+++
T Consensus         2 ~ly~~~----~Cp~-C~~ak~~L~~----------------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~   54 (72)
T TIGR02194         2 TVYSKN----NCVQ-CKMTKKALEE----------------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA   54 (72)
T ss_pred             EEEeCC----CCHH-HHHHHHHHHH----------------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence            467777    8999 6876655432                25778889999887655555   8889999866

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=95.17  E-value=0.097  Score=45.75  Aligned_cols=29  Identities=7%  Similarity=0.016  Sum_probs=25.1

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      .+||.||++|   +|++ |+.-.|++++.++++
T Consensus        46 ~vvl~f~~s~---~cp~-C~~e~~~l~~~~~~~   74 (167)
T PRK00522         46 RKVLNIFPSI---DTGV-CATSVRKFNQEAAEL   74 (167)
T ss_pred             EEEEEEEcCC---CCCc-cHHHHHHHHHHHHHc
Confidence            6899999995   5999 799999999988776

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=95.13  E-value=0.15  Score=46.01  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------cc
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------FK  124 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------~~  124 (347)
                      .+++.|+++    ||+. |..-.+++.+.++.+.+..       -+++-..+|                         .|
T Consensus        28 vvlf~~pa~----~cp~-C~~el~~l~~~~~~f~~~g-------v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D   95 (203)
T cd03016          28 GILFSHPAD----FTPV-CTTELGAFAKLAPEFKKRN-------VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIAD   95 (203)
T ss_pred             EEEEEecCC----CCCc-CHHHHHHHHHHHHHHHHcC-------CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEEC
Confidence            445567777    8999 7999999999999886431       112222222                         12


Q ss_pred             CCcchHhHcCCC--------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          125 ESQSSFALFAVN--------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       125 ~~~~lf~~~~I~--------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                      .+.++++.||+.        ++|..+++.|+ |...  ....+....+++.+++.+.|.+.-...-..+--|-||.
T Consensus        96 ~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~-G~I~--~~~~~~~~~gr~~~ell~~l~~lq~~~~~~~~~p~~w~  168 (203)
T cd03016          96 PDREVAKLLGMIDPDAGSTLTVRAVFIIDPD-KKIR--LILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWK  168 (203)
T ss_pred             chHHHHHHcCCccccCCCCceeeEEEEECCC-CeEE--EEEecCCCCCCCHHHHHHHHHHHhhHhhcCcCcCCCCC
Confidence            235788889886        24567888764 4432  00111112246778887877553221111445577874

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.09  E-value=0.037  Score=49.57  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=54.4

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh----h----hcCCCCC--------C-----------CCC----ceE
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF----I----ANNVDNP--------S-----------SRG----KLF  117 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~----~----~~~p~~~--------~-----------~~~----~v~  117 (347)
                      -..++.||.+    .|++ |+++.++.+...+..    .    ..||++.        +           .++    ..-
T Consensus        78 ~~~i~~f~D~----~Cp~-C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~  152 (197)
T cd03020          78 KRVVYVFTDP----DCPY-CRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA  152 (197)
T ss_pred             CEEEEEEECC----CCcc-HHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence            3678888888    7999 899999887411100    0    0000000        0           011    233


Q ss_pred             EEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          118 FCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       118 F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      .+..+++++.++.+++|+++.|+++ ++.+  ..         ..|..++++|.+||
T Consensus       153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G--~~---------~~G~~~~~~l~~~L  197 (197)
T cd03020         153 SCDNPVAANLALGRQLGVNGTPTIV-LADG--RV---------VPGAPPAAQLEALL  197 (197)
T ss_pred             ccCchHHHHHHHHHHcCCCcccEEE-ECCC--eE---------ecCCCCHHHHHhhC
Confidence            5566777788999999999999997 7643  22         13445577776653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.07  E-value=0.19  Score=51.88  Aligned_cols=77  Identities=8%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +=..|+++.-+++-   +-.++.. +-.|.++    .|+. |.+....++++|..           +.+|-+-.+|..+.
T Consensus        99 ~~~~l~~~~~~~i~---~~~~~~~-i~~fv~~----~Cp~-Cp~~v~~~~~~a~~-----------~~~i~~~~id~~~~  158 (517)
T PRK15317         99 HPPKLDQEVIEQIK---ALDGDFH-FETYVSL----SCHN-CPDVVQALNLMAVL-----------NPNITHTMIDGALF  158 (517)
T ss_pred             CCCCCCHHHHHHHH---hcCCCeE-EEEEEcC----CCCC-cHHHHHHHHHHHHh-----------CCCceEEEEEchhC
Confidence            34577777666653   2223433 4456666    6999 78777777777653           23688999999999


Q ss_pred             cchHhHcCCCCCceEEE
Q 048343          127 QSSFALFAVNSLPHIRL  143 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~  143 (347)
                      +++.++|++.++|++++
T Consensus       159 ~~~~~~~~v~~VP~~~i  175 (517)
T PRK15317        159 QDEVEARNIMAVPTVFL  175 (517)
T ss_pred             HhHHHhcCCcccCEEEE
Confidence            99999999999999976

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=95.01  E-value=0.042  Score=42.70  Aligned_cols=77  Identities=10%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cchHhHcCC--CCCceEEEEc
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QSSFALFAV--NSLPHIRLVG  145 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~lf~~~~I--~svP~l~~fp  145 (347)
                      |+.|+.+    ||+. |++...-++++...           ...+.+-.+|+++.    +++.+..+-  .++|.+++  
T Consensus         2 V~vys~~----~Cp~-C~~ak~~L~~~~~~-----------~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--   63 (86)
T TIGR02183         2 VVIFGRP----GCPY-CVRAKQLAEKLAIE-----------RADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--   63 (86)
T ss_pred             EEEEeCC----CCcc-HHHHHHHHHHhCcc-----------cCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--
Confidence            4567777    8999 78887776654422           12477888888743    256666664  89999954  


Q ss_pred             CCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      .  |+.          -+  ..+++.++++++.++
T Consensus        64 ~--g~~----------ig--G~~dl~~~~~~~~~~   84 (86)
T TIGR02183        64 D--EKH----------VG--GCTDFEQLVKENFDI   84 (86)
T ss_pred             C--CEE----------ec--CHHHHHHHHHhcccc
Confidence            2  221          11  257788888887664

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=94.98  E-value=0.17  Score=45.37  Aligned_cols=115  Identities=12%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCC-------CCCC------C--C--CceEEEEEEccCCcchHh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNV-------DNPS------S--R--GKLFFCYLEFKESQSSFA  131 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p-------~~~~------~--~--~~v~F~~vD~~~~~~lf~  131 (347)
                      .+|+.|+ +.    ||+. |..-.++|++..+++.+..-       +...      .  .  .++-|-.+ .|.+.++.+
T Consensus        33 ~vvL~F~P~~----~~p~-C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpll-sD~~~~ia~  106 (187)
T PRK10382         33 WSVFFFYPAD----FTFV-CPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMI-GDPTGALTR  106 (187)
T ss_pred             eEEEEEECCC----CCCc-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEE-EcCchHHHH
Confidence            5788888 66    8999 79989999999888853210       0000      0  0  12322222 234668899


Q ss_pred             HcCC----CCC--ceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC-CcccCCCCchh
Q 048343          132 LFAV----NSL--PHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV-GPIHHPPLLSK  193 (347)
Q Consensus       132 ~~~I----~sv--P~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i-~~i~~p~~~~~  193 (347)
                      .||+    .++  |+.++..|+ |...  .........+++++++.+.|++.--.+- ....-|.||..
T Consensus       107 ~ygv~~~~~g~~~r~tfIID~~-G~I~--~~~~~~~~~~~~~~eil~~l~alq~~~~~~g~~~p~~w~~  172 (187)
T PRK10382        107 NFDNMREDEGLADRATFVVDPQ-GIIQ--AIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKE  172 (187)
T ss_pred             HcCCCcccCCceeeEEEEECCC-CEEE--EEEEeCCCCCCCHHHHHHHHHhhhhHhhcCCeEeCCCCCc
Confidence            9998    356  999999875 4532  0111111234678888888854321110 01234888864

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.91  E-value=0.068  Score=38.49  Aligned_cols=51  Identities=12%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~  143 (347)
                      +++|+++    ||+. |+.+++.+++.                ++-|-.+|++++++    +.+..+..++|+++.
T Consensus         2 v~ly~~~----~Cp~-C~~~~~~L~~~----------------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~   56 (72)
T cd02066           2 VVVFSKS----TCPY-CKRAKRLLESL----------------GIEFEEIDILEDGELREELKELSGWPTVPQIFI   56 (72)
T ss_pred             EEEEECC----CCHH-HHHHHHHHHHc----------------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            4678887    8999 78877765531                25677889887653    344458889998854

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=94.86  E-value=0.07  Score=44.83  Aligned_cols=29  Identities=10%  Similarity=0.033  Sum_probs=24.8

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      .+|+.||++|   +|++ |+.-.|+++++.+++
T Consensus        28 ~vvl~f~~~~---~c~~-C~~e~~~l~~~~~~~   56 (143)
T cd03014          28 VKVISVFPSI---DTPV-CATQTKRFNKEAAKL   56 (143)
T ss_pred             eEEEEEEcCC---CCCc-CHHHHHHHHHHHHhc
Confidence            6899999985   5899 799999999988775

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=94.78  E-value=0.17  Score=45.57  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE--------------------------c
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE--------------------------F  123 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD--------------------------~  123 (347)
                      .++|+|++.+   ||+. |..-.+++.+.++++.+..       -+++...+|                          .
T Consensus        38 ~~lL~F~p~~---~~~~-C~~e~~~l~~~~~~f~~~g-------~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~  106 (199)
T PTZ00253         38 WVVLFFYPLD---FTFV-CPTEIIQFSDSVKRFNELN-------CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLA  106 (199)
T ss_pred             EEEEEEEcCC---CCCc-CHHHHHHHHHHHHHHHHcC-------CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEE
Confidence            6788999765   8999 7877789999998885421       122222222                          2


Q ss_pred             cCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          124 KESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       124 ~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                      |...++.+.||+.      .+|+.+++.|. |...  .........+++.+++.+.|...-...-..+--|.||.
T Consensus       107 D~~~~ia~~ygv~~~~~g~~~r~~fiID~~-G~i~--~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~~~cp~~w~  178 (199)
T PTZ00253        107 DKTKSIARSYGVLEEEQGVAYRGLFIIDPK-GMLR--QITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWK  178 (199)
T ss_pred             CcHhHHHHHcCCcccCCCceEEEEEEECCC-CEEE--EEEecCCCCCCCHHHHHHHHHhhhhHHhcCCEeCCCCC
Confidence            2345788888885      36888888875 4432  00011112246677777766543221111233466664

>PRK13599 putative peroxiredoxin; Provisional

Probab=94.71  E-value=0.25  Score=45.26  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=67.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-C----------------CCceEEEEEEccCCcch
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-S----------------RGKLFFCYLEFKESQSS  129 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~----------------~~~v~F~~vD~~~~~~l  129 (347)
                      +.+++.|++.    ||+. |..-.++|.+.+++|.+..-.  +.+ +                +.++-|=.+ .|.+.++
T Consensus        30 ~vVL~~~pa~----~tpv-Ct~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil-~D~~~~v  103 (215)
T PRK13599         30 WFVLFSHPAD----FTPV-CTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVI-ADDLGKV  103 (215)
T ss_pred             eEEEEEeCCC----CCCc-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEE-ECCCchH
Confidence            3455677787    8999 799889999999888542100  000 0                012222211 2345678


Q ss_pred             HhHcCCC-------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC-CcccCCCCch
Q 048343          130 FALFAVN-------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV-GPIHHPPLLS  192 (347)
Q Consensus       130 f~~~~I~-------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i-~~i~~p~~~~  192 (347)
                      .+.||+.       ++|+.+++.|. |...  ....+....++..+++.+.|.+. .... ..+--|-||.
T Consensus       104 a~~yg~~~~~~~~~~~R~tfIID~d-G~Ir--~~~~~p~~~gr~~~eilr~l~~l-q~~~~~~~~~p~~w~  170 (215)
T PRK13599        104 SNQLGMIHPGKGTNTVRAVFIVDDK-GTIR--LIMYYPQEVGRNVDEILRALKAL-QTADQYGVALPEKWP  170 (215)
T ss_pred             HHHcCCCccCCCCceeeEEEEECCC-CEEE--EEEEcCCCCCCCHHHHHHHHHHh-hhhhhcCCCcCCCCC
Confidence            9999983       78999999875 4542  01111112346788888888642 2111 2456688884

>PTZ00256 glutathione peroxidase; Provisional

Probab=94.61  E-value=0.16  Score=45.13  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=23.9

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ++++++|+    ||++ |++-.|+++++.++|.
T Consensus        44 vlv~n~at----wCp~-C~~e~p~l~~l~~~~~   71 (183)
T PTZ00256         44 IIVVNVAC----KCGL-TSDHYTQLVELYKQYK   71 (183)
T ss_pred             EEEEEECC----CCCc-hHHHHHHHHHHHHHHh
Confidence            44566898    8999 8999999999999984

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=94.48  E-value=0.059  Score=40.68  Aligned_cols=51  Identities=8%  Similarity=0.061  Sum_probs=34.8

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh----HcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA----LFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~----~~~I~svP~l~~  143 (347)
                      |++|+.+    +|+. |++.+.-+++                .++-|-.+|++++++..+    ..|..++|++++
T Consensus         1 v~ly~~~----~Cp~-C~~a~~~L~~----------------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i   55 (79)
T TIGR02181         1 VTIYTKP----YCPY-CTRAKALLSS----------------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI   55 (79)
T ss_pred             CEEEecC----CChh-HHHHHHHHHH----------------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence            3567777    8999 7887766552                135677778887654433    347889999844

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=94.46  E-value=0.098  Score=43.77  Aligned_cols=44  Identities=9%  Similarity=0.116  Sum_probs=33.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      .++++|+++    ||++ |++-.|+++++.+++.+         .++.++-+..++..
T Consensus        26 ~vl~f~~~~----~Cp~-C~~~~~~l~~~~~~~~~---------~~v~vv~V~~~~~~   69 (149)
T cd02970          26 VVVVFYRGF----GCPF-CREYLRALSKLLPELDA---------LGVELVAVGPESPE   69 (149)
T ss_pred             EEEEEECCC----CChh-HHHHHHHHHHHHHHHHh---------cCeEEEEEeCCCHH
Confidence            455556687    8999 79999999999988842         34667777776654

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.40  E-value=0.096  Score=38.83  Aligned_cols=51  Identities=4%  Similarity=0.040  Sum_probs=34.4

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCC-CCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVN-SLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~-svP~l~~  143 (347)
                      +++|+.+    +|+. |++.+..+++                .++-|-.+|++++++    +.+..+-. ++|.+++
T Consensus         2 i~ly~~~----~Cp~-C~~ak~~L~~----------------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i   57 (75)
T cd03418           2 VEIYTKP----NCPY-CVRAKALLDK----------------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI   57 (75)
T ss_pred             EEEEeCC----CChH-HHHHHHHHHH----------------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence            4678887    8999 6776554432                246777888887654    34445776 9998853

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=94.33  E-value=0.17  Score=41.34  Aligned_cols=85  Identities=14%  Similarity=0.237  Sum_probs=58.4

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..|.-+++.++++.++   +.+.  ..+++|+. +|. .|+- |.+..=..-++.+++          .+.+..+.++-+
T Consensus         8 ~~g~~~vd~~~ld~~l---~~~~--~~vlf~~g-Dp~-r~~E-~~DvaVILPEL~~af----------~~~~~~avv~~~   69 (107)
T PF07449_consen    8 RHGWPRVDADTLDAFL---AAPG--DAVLFFAG-DPA-RFPE-TADVAVILPELVKAF----------PGRFRGAVVARA   69 (107)
T ss_dssp             T-TEEEE-CCCHHHHH---HCCS--CEEEEESS--TT-TSTT-CCHHHHHHHHHHCTS----------TTSEEEEEEEHH
T ss_pred             hcCCeeechhhHHHHH---hCCC--cEEEEECC-CCC-cCcc-cccceeEcHHHHHhh----------hCccceEEECch
Confidence            4689999999999998   3322  35555555 554 3556 566444555555554          356788888866


Q ss_pred             CCcchHhHcCCCCCceEEEEcCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      ...++.++||+...|++++|..|
T Consensus        70 ~e~~L~~r~gv~~~PaLvf~R~g   92 (107)
T PF07449_consen   70 AERALAARFGVRRWPALVFFRDG   92 (107)
T ss_dssp             HHHHHHHHHT-TSSSEEEEEETT
T ss_pred             hHHHHHHHhCCccCCeEEEEECC
Confidence            77899999999999999999964

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=94.26  E-value=0.1  Score=43.55  Aligned_cols=31  Identities=10%  Similarity=0.080  Sum_probs=26.6

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      .++|.|+++    ||+.+|....|+++++++++.+
T Consensus        24 ~~vl~f~~~----~C~~~C~~~l~~l~~~~~~~~~   54 (142)
T cd02968          24 PVLVYFGYT----HCPDVCPTTLANLAQALKQLGA   54 (142)
T ss_pred             EEEEEEEcC----CCcccCHHHHHHHHHHHHHhhH
Confidence            688999998    8996579999999999998843

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=94.22  E-value=0.099  Score=39.76  Aligned_cols=55  Identities=9%  Similarity=0.111  Sum_probs=38.3

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---cchHhHcCCCCCceEEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---QSSFALFAVNSLPHIRL  143 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---~~lf~~~~I~svP~l~~  143 (347)
                      +..-|++|+.+    ||+. |++.+.-++.                .++-|-.+|+++.   .++.+..|..++|.+++
T Consensus         6 ~~~~V~ly~~~----~Cp~-C~~ak~~L~~----------------~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i   63 (79)
T TIGR02190         6 KPESVVVFTKP----GCPF-CAKAKATLKE----------------KGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI   63 (79)
T ss_pred             CCCCEEEEECC----CCHh-HHHHHHHHHH----------------cCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence            44567788888    8999 7877665542                1355667888765   34555678999999964

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.18  E-value=0.46  Score=49.04  Aligned_cols=77  Identities=10%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +-.+|+++.-+++-   +=.++..+-+ |.++    .|+. |....-..+++|..    +       .+|-.-.+|..+.
T Consensus       100 ~~~~l~~~~~~~~~---~~~~~~~i~~-f~~~----~Cp~-Cp~~v~~~~~~a~~----~-------p~i~~~~id~~~~  159 (515)
T TIGR03140       100 HGPKLDEGIIDRIR---RLNGPLHFET-YVSL----TCQN-CPDVVQALNQMALL----N-------PNISHTMIDGALF  159 (515)
T ss_pred             CCCCCCHHHHHHHH---hcCCCeEEEE-EEeC----CCCC-CHHHHHHHHHHHHh----C-------CCceEEEEEchhC
Confidence            44678887776663   2223445444 5555    6999 67666666555543    2       3688888999999


Q ss_pred             cchHhHcCCCCCceEEE
Q 048343          127 QSSFALFAVNSLPHIRL  143 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~  143 (347)
                      +++.++|++.+||++++
T Consensus       160 ~~~~~~~~v~~VP~~~i  176 (515)
T TIGR03140       160 QDEVEALGIQGVPAVFL  176 (515)
T ss_pred             HHHHHhcCCcccCEEEE
Confidence            99999999999999986

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.09  E-value=0.23  Score=51.76  Aligned_cols=96  Identities=14%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +-..|+++.-+++-   +=.++..+- .|.++    +|+. |.+.....+++|..           ..++-.-.+|.++.
T Consensus       459 ~~~~l~~~~~~~i~---~~~~~~~i~-v~~~~----~C~~-Cp~~~~~~~~~~~~-----------~~~i~~~~i~~~~~  518 (555)
T TIGR03143       459 PGQPLGEELLEKIK---KITKPVNIK-IGVSL----SCTL-CPDVVLAAQRIASL-----------NPNVEAEMIDVSHF  518 (555)
T ss_pred             CCCCCCHHHHHHHH---hcCCCeEEE-EEECC----CCCC-cHHHHHHHHHHHHh-----------CCCceEEEEECccc
Confidence            34577777776663   222344433 45566    7999 67766666666643           13688889999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +++.++|++.++|++++=    ++.        .+.|..+.+++.+||
T Consensus       519 ~~~~~~~~v~~vP~~~i~----~~~--------~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       519 PDLKDEYGIMSVPAIVVD----DQQ--------VYFGKKTIEEMLELI  554 (555)
T ss_pred             HHHHHhCCceecCEEEEC----CEE--------EEeeCCCHHHHHHhh
Confidence            999999999999999872    221        123444778887775

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.97  E-value=0.025  Score=51.76  Aligned_cols=65  Identities=20%  Similarity=0.192  Sum_probs=57.7

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcC
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGP  146 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp  146 (347)
                      ++...++.|+|.    ||.. |+++...++.+|+.. +          ++.|++.|.++.+++...+.++.+|+...+.-
T Consensus        16 ~~~~~~~~f~a~----wa~~-~~q~~~v~~~~~~~~-~----------~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~   79 (227)
T KOG0911|consen   16 KGKLLVLHFWAI----WAVV-QKQMDQVFDHLAEYF-K----------NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFL   79 (227)
T ss_pred             ccchhhhhhhhh----hhhh-hhhHHHHHHHHHHhh-h----------hheeeeehhhhhhHHHHHHHHhcCceeeeeec
Confidence            455788999999    8999 899999999999865 2          58999999999999999999999999999964


Q ss_pred             C
Q 048343          147 D  147 (347)
Q Consensus       147 ~  147 (347)
                      +
T Consensus        80 ~   80 (227)
T KOG0911|consen   80 G   80 (227)
T ss_pred             c
Confidence            3

>PRK10329 glutaredoxin-like protein; Provisional

Probab=93.76  E-value=0.11  Score=40.07  Aligned_cols=51  Identities=6%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH---hHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF---ALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf---~~~~I~svP~l~~  143 (347)
                      +.+||.+    +|+. |+..+..+++                .++-|-.+|++++++..   +..|.+++|.+++
T Consensus         3 v~lYt~~----~Cp~-C~~ak~~L~~----------------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i   56 (81)
T PRK10329          3 ITIYTRN----DCVQ-CHATKRAMES----------------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA   56 (81)
T ss_pred             EEEEeCC----CCHh-HHHHHHHHHH----------------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence            5678887    8999 6876655432                25788899999877543   3457789999965

>PRK13189 peroxiredoxin; Provisional

Probab=93.66  E-value=0.42  Score=43.98  Aligned_cols=115  Identities=10%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC----------------CceEEEEEEccCCcch
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR----------------GKLFFCYLEFKESQSS  129 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~----------------~~v~F~~vD~~~~~~l  129 (347)
                      +.++++|++.    ||+. |..-.++|.+.++.+.+..-.  +.+ ++                .++-|-. =.|.+.++
T Consensus        37 ~vvL~f~pa~----fcpv-C~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPl-lsD~~~~i  110 (222)
T PRK13189         37 WFVLFSHPAD----FTPV-CTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPI-IADDRGEI  110 (222)
T ss_pred             eEEEEEeCCC----CCCC-CHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeE-EEcCccHH
Confidence            4455567787    8999 798889999999888542100  000 00                0122211 11234578


Q ss_pred             HhHcCCC-------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          130 FALFAVN-------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       130 f~~~~I~-------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                      ++.||+.       ++|+.++..|. |...  .........+++.+++.+.|++.....--...-|-||.
T Consensus       111 a~~ygv~~~~~~~~~~r~tfIID~~-G~Ir--~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~p~~w~  177 (222)
T PRK13189        111 AKKLGMISPGKGTNTVRAVFIIDPK-GIIR--AILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWP  177 (222)
T ss_pred             HHHhCCCccccCCCceeEEEEECCC-CeEE--EEEecCCCCCCCHHHHHHHHHHhhhHhhcCcCcCCCCC
Confidence            8899976       57899999875 4432  11111122356777887877643211101234577875

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=93.56  E-value=0.8  Score=41.44  Aligned_cols=118  Identities=15%  Similarity=0.168  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhcCCC-CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCC
Q 048343           33 LVSELLNLQSQSEA-GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPS  111 (347)
Q Consensus        33 ~~~~L~~l~~~s~~-~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~  111 (347)
                      |.+++.+.+.+++= .|.+++..+|-+-|+  .....-+|||-++..    +-+. |+-+.-.++.+|..|.        
T Consensus        77 Rl~E~r~~~~k~kfG~V~~ISg~dyv~EVT--~As~gvwVvvhLy~~----gvp~-c~Ll~~~l~~la~kfp--------  141 (240)
T KOG3170|consen   77 RLAEWRATAEKAKFGEVFPISGPDYVKEVT--KASEGVWVVVHLYKQ----GVPL-CALLSHHLQSLACKFP--------  141 (240)
T ss_pred             HHHHHHHHHHHhcccceeeccchHHHHHHH--hccCccEEEEEeecc----ccHH-HHHHHHHHHHHhhcCC--------
Confidence            34455554544433 399999999998884  555677888888887    6788 7999999999998872        


Q ss_pred             CCCceEEEEEEccCC-cchHhHcCCCCCceEEEEcCCCCCCCCccccc---ccccc-ccCHHHHHHHHHhh
Q 048343          112 SRGKLFFCYLEFKES-QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQM---EQGDF-ARMAESMADFVQSR  177 (347)
Q Consensus       112 ~~~~v~F~~vD~~~~-~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~---~~~~~-~~~a~~l~~fi~~~  177 (347)
                         .+.|+++=.+.. ++    |-=.+.||+++|--  |..+   .++   -...| ..+.++++.++-+.
T Consensus       142 ---~iKFVki~at~cIpN----YPe~nlPTl~VY~~--G~lk---~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  142 ---QIKFVKIPATTCIPN----YPESNLPTLLVYHH--GALK---KQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             ---cceEEecccccccCC----CcccCCCeEEEeec--chHH---hheehhhhhcCCcCCHHHHHHHHHhc
Confidence               578888765542 22    34458999999975  4443   222   11121 36788998777654

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=93.22  E-value=0.49  Score=43.20  Aligned_cols=109  Identities=15%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             CeEEcCh-hhHHHHhcccCCC-CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           47 GVIHLND-QLVSRFLTSTKTP-RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~-R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .|+++++ +.|-+-+   .+. .-+.++|..+-+    +-+- |..+.....-+|..|           ..+.|+++--+
T Consensus       139 ~V~El~~gkqfld~i---dke~ks~~i~VhIYEd----gi~g-cealn~~~~cLAAey-----------P~vKFckikss  199 (273)
T KOG3171|consen  139 FVYELETGKQFLDTI---DKELKSTTIVVHIYED----GIKG-CEALNSSLTCLAAEY-----------PIVKFCKIKSS  199 (273)
T ss_pred             eEEEeccchhHHHHH---hcccceEEEEEEEecC----CCch-HHHHhhhHHHhhccC-----------CceeEEEeeec
Confidence            4999987 4777776   333 457778888887    4556 688888888888765           26899998766


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCcc-ccccccccccCHHHHHHHHHhh
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDS-VQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~-~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .. ..-.+|.++.+|++++|+.  |+..... ..-.+......+.++.+|+++.
T Consensus       200 ~~-gas~~F~~n~lP~LliYkg--GeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  200 NT-GASDRFSLNVLPTLLIYKG--GELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             cc-cchhhhcccCCceEEEeeC--CchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            43 4467899999999999985  3432011 0112222235577788888875

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=92.96  E-value=0.22  Score=39.88  Aligned_cols=51  Identities=8%  Similarity=0.023  Sum_probs=32.6

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc---h----HhHcCCCCCceEE
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS---S----FALFAVNSLPHIR  142 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~---l----f~~~~I~svP~l~  142 (347)
                      -|+.|+.+    ||+. |++.+.-+++                .++-|..+|+++.++   .    -+.-|-+++|.++
T Consensus         9 ~Vvvysk~----~Cp~-C~~ak~~L~~----------------~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf   66 (99)
T TIGR02189         9 AVVIFSRS----SCCM-CHVVKRLLLT----------------LGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF   66 (99)
T ss_pred             CEEEEECC----CCHH-HHHHHHHHHH----------------cCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence            46778887    8999 6876553332                134556778876532   3    2233678999984

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=92.84  E-value=0.4  Score=36.30  Aligned_cols=58  Identities=14%  Similarity=0.091  Sum_probs=40.1

Q ss_pred             EEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc--cCC------------------------
Q 048343           73 IFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF--KES------------------------  126 (347)
Q Consensus        73 V~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~--~~~------------------------  126 (347)
                      .+|+.+    .|+. |..+.|.++++.+..          .+++.+....+  ...                        
T Consensus         2 ~~f~d~----~Cp~-C~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (98)
T cd02972           2 VEFFDP----LCPY-CYLFEPELEKLLYAD----------DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEAL   66 (98)
T ss_pred             eEEECC----CCHh-HHhhhHHHHHHHhhc----------CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHH
Confidence            456776    7999 899999999987322          23444444433  222                        


Q ss_pred             ------cchHhHcCCCCCceEEEEc
Q 048343          127 ------QSSFALFAVNSLPHIRLVG  145 (347)
Q Consensus       127 ------~~lf~~~~I~svP~l~~fp  145 (347)
                            .+.++++|++++|++++..
T Consensus        67 ~~~l~~~~~~~~~g~~g~Pt~v~~~   91 (98)
T cd02972          67 HEALADTALARALGVTGTPTFVVNG   91 (98)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEECC
Confidence                  2467889999999999864

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=92.42  E-value=0.34  Score=35.98  Aligned_cols=51  Identities=10%  Similarity=0.004  Sum_probs=35.8

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~  143 (347)
                      +++|+.+    +|+. |+..+.-+++                .++-|-.+|+++++    ++.+..+-.++|++++
T Consensus         3 v~ly~~~----~C~~-C~ka~~~L~~----------------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i   57 (73)
T cd03027           3 VTIYSRL----GCED-CTAVRLFLRE----------------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF   57 (73)
T ss_pred             EEEEecC----CChh-HHHHHHHHHH----------------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5677777    8999 6776554442                24667788998765    4566668889999954

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK13191 putative peroxiredoxin; Provisional

Probab=92.35  E-value=0.71  Score=42.24  Aligned_cols=109  Identities=7%  Similarity=0.048  Sum_probs=62.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------c
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------F  123 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------~  123 (347)
                      +.++++|+++    ||+. |..-.++|++.+++|.+..       -+|+-..+|                         .
T Consensus        35 ~vvLff~pa~----ftpv-C~tEl~~l~~~~~ef~~~g-------~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPlls  102 (215)
T PRK13191         35 WFVLFSHPGD----FTPV-CTTEFYSFAKKYEEFKKLN-------TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIA  102 (215)
T ss_pred             cEEEEEeCCC----CCCc-CHHHHHHHHHHHHHHHHCC-------CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEE
Confidence            3444467777    8999 7988899999999886421       112211111                         1


Q ss_pred             cCCcchHhHcCCC-------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          124 KESQSSFALFAVN-------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       124 ~~~~~lf~~~~I~-------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                      |.+.++.++||+-       ++|..+++.|. |...  ....+....+++.+++.+.|...-...--...-|-||.
T Consensus       103 D~~~~ia~~ygv~~~~~~~~~~r~tfIID~~-G~Ir--~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~P~~w~  175 (215)
T PRK13191        103 DPMGNVAKRLGMIHAESSTATVRAVFIVDDK-GTVR--LILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANWP  175 (215)
T ss_pred             CCchHHHHHcCCcccccCCceeEEEEEECCC-CEEE--EEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence            2235777888863       47888888875 4432  01111112357888888888653211101233477775

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=92.34  E-value=1  Score=42.59  Aligned_cols=113  Identities=16%  Similarity=0.042  Sum_probs=63.7

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCC--CCC-CC-----------------CceEE-EEEEccCCc
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVD--NPS-SR-----------------GKLFF-CYLEFKESQ  127 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~--~~~-~~-----------------~~v~F-~~vD~~~~~  127 (347)
                      .+|++|+ +.    ||+. |..-.|+|++..++|.+..-+  +.+ |+                 .++-| .-.|  .+.
T Consensus       100 ~vVL~FyPa~----ftpv-Ct~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD--~~~  172 (261)
T PTZ00137        100 YGLLVFYPLD----FTFV-CPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSD--ISR  172 (261)
T ss_pred             eEEEEEECCC----CCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEc--CCh
Confidence            4666666 55    9999 799999999999888642100  000 00                 12222 2222  346


Q ss_pred             chHhHcCCC-----CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          128 SSFALFAVN-----SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       128 ~lf~~~~I~-----svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                      ++.+.||+.     +.|..++..|. |...  .........+++.+++.+-|....-..-....-|.||.
T Consensus       173 ~iakayGv~~~~g~a~R~tFIID~d-G~I~--~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~~cPanW~  239 (261)
T PTZ00137        173 EVSKSFGLLRDEGFSHRASVLVDKA-GVVK--HVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWK  239 (261)
T ss_pred             HHHHHcCCCCcCCceecEEEEECCC-CEEE--EEEEeCCCCCCCHHHHHHHHHHhchhhhcCCCcCCCCC
Confidence            789999985     58999999875 5542  01111112356788877777533210000122377775

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=92.30  E-value=0.36  Score=35.70  Aligned_cols=50  Identities=6%  Similarity=0.098  Sum_probs=33.8

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc---hHhHcCCCCCceEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS---SFALFAVNSLPHIR  142 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~---lf~~~~I~svP~l~  142 (347)
                      +++|+.+    +|+. |+..+.-+++                .++-|-.+|++++.+   +-+..|..++|.++
T Consensus         3 v~lys~~----~Cp~-C~~ak~~L~~----------------~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if   55 (72)
T cd03029           3 VSLFTKP----GCPF-CARAKAALQE----------------NGISYEEIPLGKDITGRSLRAVTGAMTVPQVF   55 (72)
T ss_pred             EEEEECC----CCHH-HHHHHHHHHH----------------cCCCcEEEECCCChhHHHHHHHhCCCCcCeEE
Confidence            5678887    8999 6877554442                145677888886542   33345889999984

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=92.28  E-value=0.96  Score=36.55  Aligned_cols=94  Identities=16%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--CcchHh
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSSFA  131 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~lf~  131 (347)
                      .+|+.++   .. |+ -++|+|+.+....      ...-..|.++|+...          +.=..+.+|+.+  .+++++
T Consensus        10 KdfKKLL---RT-r~-NVLvLy~ks~k~a------~~~Lk~~~~~A~~vk----------G~gT~~~vdCgd~e~kKLCK   68 (112)
T cd03067          10 KDFKKLL---RT-RN-NVLVLYSKSAKSA------EALLKLLSDVAQAVK----------GQGTIAWIDCGDSESRKLCK   68 (112)
T ss_pred             HHHHHHH---hh-cC-cEEEEEecchhhH------HHHHHHHHHHHHHhc----------CceeEEEEecCChHHHHHHH
Confidence            6899987   33 22 4778887763111      222346777777652          345677888887  679999


Q ss_pred             HcCCC----CCc-eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          132 LFAVN----SLP-HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       132 ~~~I~----svP-~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      ++++.    --| .+.||++|  +-      ...|+...+...|.+|+++
T Consensus        69 KlKv~~~~kp~~~~LkHYKdG--~f------HkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          69 KLKVDPSSKPKPVELKHYKDG--DF------HTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             HHccCCCCCCCcchhhcccCC--Cc------cccccchhhHHHHHHHhhC
Confidence            99999    444 46677764  21      1345666778889999865

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=92.25  E-value=0.42  Score=39.53  Aligned_cols=30  Identities=17%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .++|.|+...   ||+. |..-.|++.++++.+.
T Consensus        24 ~~ll~f~~~~---~c~~-C~~~~~~l~~~~~~~~   53 (140)
T cd02971          24 WVVLFFYPKD---FTPV-CTTELCAFRDLAEEFA   53 (140)
T ss_pred             eEEEEEeCCC---CCCc-CHHHHHHHHHHHHHHH
Confidence            5788888432   8999 7999999999999884

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK10638 glutaredoxin 3; Provisional

Probab=91.68  E-value=0.4  Score=36.65  Aligned_cols=51  Identities=6%  Similarity=0.086  Sum_probs=35.4

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~  143 (347)
                      +++|+.+    +|+. |++.+..+++                .++-|..+|+++++    ++.+.-+..++|.+++
T Consensus         4 v~ly~~~----~Cp~-C~~a~~~L~~----------------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKA----TCPF-CHRAKALLNS----------------KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECC----CChh-HHHHHHHHHH----------------cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5667776    8999 7877665542                13567778887654    4456668899998854

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=91.40  E-value=0.39  Score=40.33  Aligned_cols=29  Identities=7%  Similarity=-0.024  Sum_probs=23.5

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .++|.|+ ++    ||+. |..-.|+++++++++.
T Consensus        30 ~~vl~f~~~~----~c~~-C~~~~~~l~~~~~~~~   59 (149)
T cd03018          30 PVVLVFFPLA----FTPV-CTKELCALRDSLELFE   59 (149)
T ss_pred             eEEEEEeCCC----CCcc-HHHHHHHHHHHHHHHH
Confidence            4566565 77    8999 7999999999998874

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PHA03050 glutaredoxin; Provisional

Probab=91.24  E-value=0.51  Score=38.46  Aligned_cols=55  Identities=9%  Similarity=0.073  Sum_probs=35.2

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---C----cchHhHcCCCCCceEEE
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---S----QSSFALFAVNSLPHIRL  143 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---~----~~lf~~~~I~svP~l~~  143 (347)
                      -|+.|+.+    |||. |+....-++...-             ..--|-.+|+++   +    .++-+.-|-++||.+++
T Consensus        14 ~V~vys~~----~CPy-C~~ak~~L~~~~i-------------~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050         14 KVTIFVKF----TCPF-CRNALDILNKFSF-------------KRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             CEEEEECC----CChH-HHHHHHHHHHcCC-------------CcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            46778888    8999 7877655543210             001466777775   2    14566678899999955

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=91.02  E-value=2.3  Score=34.05  Aligned_cols=96  Identities=15%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH
Q 048343           53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL  132 (347)
Q Consensus        53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~  132 (347)
                      .++.++++   .. .+..+|-+|....         .+....|.++|+..+.          +..|+...   +.+++++
T Consensus         8 ~~~l~~f~---~~-~~~~Vvg~f~~~~---------~~~~~~F~~vA~~~R~----------d~~F~~~~---~~~~~~~   61 (104)
T cd03069           8 EAEFEKFL---SD-DDASVVGFFEDED---------SKLLSEFLKAADTLRE----------SFRFAHTS---DKQLLEK   61 (104)
T ss_pred             HHHHHHHh---cc-CCcEEEEEEcCCC---------chHHHHHHHHHHhhhh----------cCEEEEEC---hHHHHHh
Confidence            35677776   22 3445555665542         3457899999998743          35665433   3466788


Q ss_pred             cCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          133 FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       133 ~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++  -|++.+|.|.. -++...+....|+|..+.+.|.+||...
T Consensus        62 ~~~--~~~ivl~~p~~-~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          62 YGY--GEGVVLFRPPR-LSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             cCC--CCceEEEechh-hhcccCcccccccCcCCHHHHHHHHHhh
Confidence            888  68899997631 0000112223356666789999999864

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=90.99  E-value=1.1  Score=46.71  Aligned_cols=60  Identities=25%  Similarity=0.217  Sum_probs=49.5

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEc
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVG  145 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fp  145 (347)
                      ..+++|+.+    .|+. |.+++.-.+++|. .          ++++-+-..|..++++.+++|+++.+|++.+..
T Consensus       368 v~l~~~~~~----~~~~-~~e~~~~l~e~~~-~----------s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~  427 (555)
T TIGR03143       368 VTLLLFLDG----SNEK-SAELQSFLGEFAS-L----------SEKLNSEAVNRGEEPESETLPKITKLPTVALLD  427 (555)
T ss_pred             EEEEEEECC----Cchh-hHHHHHHHHHHHh-c----------CCcEEEEEeccccchhhHhhcCCCcCCEEEEEe
Confidence            456778876    5888 7888887777773 2          468888889999999999999999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=90.80  E-value=0.86  Score=37.09  Aligned_cols=78  Identities=17%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----  127 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----  127 (347)
                      +.+++++++   +...+..++++=-++    .|+. ..+...+|++.++.-          .+++-++.+|+-+.+    
T Consensus         6 t~eql~~i~---~~S~~~~~~iFKHSt----~C~I-S~~a~~~~e~~~~~~----------~~~~~~y~l~v~~~R~vSn   67 (105)
T PF11009_consen    6 TEEQLEEIL---EESKEKPVLIFKHST----RCPI-SAMALREFEKFWEES----------PDEIPVYYLDVIEYRPVSN   67 (105)
T ss_dssp             SHHHHHHHH---HH---SEEEEEEE-T----T-HH-HHHHHHHHHHHHHHH----------T----EEEEEGGGGHHHHH
T ss_pred             CHHHHHHHH---HhcccCcEEEEEeCC----CChh-hHHHHHHHHHHhhcC----------CccceEEEEEEEeCchhHH
Confidence            346788887   332344566555565    7999 899999999877653          223889999999865    


Q ss_pred             chHhHcCCCC-CceEEEEcCC
Q 048343          128 SSFALFAVNS-LPHIRLVGPD  147 (347)
Q Consensus       128 ~lf~~~~I~s-vP~l~~fpp~  147 (347)
                      .++++|||+. =|.++++..|
T Consensus        68 ~IAe~~~V~HeSPQ~ili~~g   88 (105)
T PF11009_consen   68 AIAEDFGVKHESPQVILIKNG   88 (105)
T ss_dssp             HHHHHHT----SSEEEEEETT
T ss_pred             HHHHHhCCCcCCCcEEEEECC
Confidence            7899999998 8999999964

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG3414 consensus Component of the U4/U6

Probab=90.33  E-value=1.4  Score=36.90  Aligned_cols=108  Identities=13%  Similarity=0.176  Sum_probs=71.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      +..+|+-|--.    |-+. |-.+....++.|+..          ++-...+-+|+++-++.-+.|++...|++++|=.+
T Consensus        23 ~rlvViRFGr~----~Dp~-C~~mD~~L~~i~~~v----------snfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~   87 (142)
T KOG3414|consen   23 ERLVVIRFGRD----WDPT-CMKMDELLSSIAEDV----------SNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN   87 (142)
T ss_pred             ceEEEEEecCC----CCch-HhhHHHHHHHHHHHH----------hhceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence            44677778776    7888 799999999999875          23478889999999999999999999999998753


Q ss_pred             CCCCCCcc--cccccccc-ccCHHHHHHHHHh-----hcCCCCCcccCCCCchh
Q 048343          148 AKSLKDDS--VQMEQGDF-ARMAESMADFVQS-----RTKLTVGPIHHPPLLSK  193 (347)
Q Consensus       148 ~g~~~~~~--~~~~~~~~-~~~a~~l~~fi~~-----~t~~~i~~i~~p~~~~~  193 (347)
                      . ..+-+.  ......++ -.+.+++.+-+..     +-|.  +-+..|.||+.
T Consensus        88 k-HmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~KGK--giV~sP~dy~~  138 (142)
T KOG3414|consen   88 K-HMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARKGK--GIVQSPKDYST  138 (142)
T ss_pred             c-eEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhcCC--eEEECCcchHh
Confidence            2 111000  00011122 2456777776643     2232  23566878764

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=90.05  E-value=0.92  Score=35.36  Aligned_cols=56  Identities=7%  Similarity=0.092  Sum_probs=34.8

Q ss_pred             eEEEEEecC-CCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343           70 SILIFFDAH-QLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        70 ~vvV~fTA~-~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~  143 (347)
                      .++| |+.. ....||+. |+..+.-++.                .++-|-.+|+++++    .+.+.-|-+++|.+++
T Consensus         9 ~vvv-f~k~~~~~~~Cp~-C~~ak~~L~~----------------~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi   69 (90)
T cd03028           9 PVVL-FMKGTPEEPRCGF-SRKVVQILNQ----------------LGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV   69 (90)
T ss_pred             CEEE-EEcCCCCCCCCcH-HHHHHHHHHH----------------cCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            3444 5432 23458999 6766544332                13678888887665    3455568889999854

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=89.52  E-value=0.88  Score=34.86  Aligned_cols=52  Identities=4%  Similarity=0.077  Sum_probs=35.2

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-----chHhHc-CCCCCceEEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-----SSFALF-AVNSLPHIRLV  144 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-----~lf~~~-~I~svP~l~~f  144 (347)
                      ++.||-+    +||. |+....-.+        .        ..+-|..+|+++..     +..++. |-+++|.+++=
T Consensus         3 v~iyt~~----~CPy-C~~ak~~L~--------~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~   60 (80)
T COG0695           3 VTIYTKP----GCPY-CKRAKRLLD--------R--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG   60 (80)
T ss_pred             EEEEECC----CCch-HHHHHHHHH--------H--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence            4567776    7999 676544332        1        25777888888654     445555 79999999873

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=88.54  E-value=6.5  Score=31.13  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=60.0

Q ss_pred             eEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +.++ +.++.++++   +...+-.+|-+|....         .+....|.++|+..+.          ...|+..   .+
T Consensus         2 v~~i~~~~~~e~~~---~~~~~~~Vvg~f~~~~---------~~~~~~F~~vA~~~R~----------d~~F~~~---~~   56 (102)
T cd03066           2 VEIINSERELQAFE---NIEDDIKLIGYFKSED---------SEHYKAFEEAAEEFHP----------YIKFFAT---FD   56 (102)
T ss_pred             ceEcCCHHHHHHHh---cccCCeEEEEEECCCC---------CHHHHHHHHHHHhhhc----------CCEEEEE---Cc
Confidence            4556 345588887   3123545555665542         3456799999998742          3455332   23


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCcccccccc-ccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQG-DFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~-~~~~~a~~l~~fi~~~  177 (347)
                      +++.+.+++. -|.+.++++. .+.      ...| ++..+.+.|.+||+..
T Consensus        57 ~~~~~~~~~~-~~~i~l~~~~-~e~------~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          57 SKVAKKLGLK-MNEVDFYEPF-MEE------PVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             HHHHHHcCCC-CCcEEEeCCC-CCC------CcccCCCCCCHHHHHHHHHHh
Confidence            4667777775 6999999862 111      1234 5567899999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=87.07  E-value=4.8  Score=32.52  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=56.9

Q ss_pred             EEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           49 IHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        49 I~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      .++ +.++.++++   ....+..+|.+|....         .+....|.++|+..+          ++..|+...   +.
T Consensus         3 ~~i~s~~ele~f~---~~~~~~~VVG~F~~~~---------~~~~~~F~~vA~~~R----------dd~~F~~t~---~~   57 (107)
T cd03068           3 KQLQTLKQVQEFL---RDGDDVIIIGVFSGEE---------DPAYQLYQDAANSLR----------EDYKFHHTF---DS   57 (107)
T ss_pred             eEcCCHHHHHHHH---hcCCCEEEEEEECCCC---------CHHHHHHHHHHHhcc----------cCCEEEEEC---hH
Confidence            445 335577776   2221445555665542         245678999998864          245664432   34


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccc-cCHHH-HHHHHHh
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFA-RMAES-MADFVQS  176 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~-~~a~~-l~~fi~~  176 (347)
                      ++++++++. -|.+.+|.|..=..+ .++....|++. .+.++ |.+||++
T Consensus        58 ~~~~~~~~~-~~~vvl~rp~~~~~k-~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          58 EIFKSLKVS-PGQLVVFQPEKFQSK-YEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HHHHhcCCC-CCceEEECcHHHhhh-cCcceeeeeccccchHHHHHHHHhc
Confidence            677888886 577777776421111 22223344443 35545 9999976

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=86.20  E-value=1.5  Score=39.15  Aligned_cols=29  Identities=17%  Similarity=0.175  Sum_probs=24.4

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ..++|.|||+    ||+. |++ .|+++++.+.|.
T Consensus        26 KvvLVvf~AS----~C~~-~~q-~~~L~~L~~~y~   54 (183)
T PRK10606         26 NVLLIVNVAS----KCGL-TPQ-YEQLENIQKAWA   54 (183)
T ss_pred             CEEEEEEEeC----CCCC-cHH-HHHHHHHHHHHh
Confidence            3688999999    8998 786 789999998884

>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus

Probab=85.27  E-value=1.6  Score=35.51  Aligned_cols=62  Identities=21%  Similarity=0.196  Sum_probs=38.9

Q ss_pred             cCCCCchhHHHHHHHHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHhhcchhhhhcCCCCceecCCCCCCceEE
Q 048343          186 HHPPLLSKKQIGLIVVVILIWIPFMAKKIFAGETLLHDRKIWLLGSVFVYFFSVSGAMHNIIRKMPMFLADRNDPNKLVF  265 (347)
Q Consensus       186 ~~p~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~l~~k~lW~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~~~g~i~y  265 (347)
                      ..|+||++.+..+.+.+.++.+.+++.|..  ++                  -+ |   ..|+.-|.-+.=+|+.-.|.|
T Consensus         2 tpPpd~sk~~l~~aiG~~lal~i~~ltr~t--lP------------------hv-G---DniH~LPhGG~YrDGTK~I~Y   57 (104)
T PF01307_consen    2 TPPPDYSKSYLAAAIGVSLALIIFTLTRST--LP------------------HV-G---DNIHSLPHGGRYRDGTKSINY   57 (104)
T ss_pred             CCcCCCccchhHHHHHHHHHHHHHHhhcCC--CC------------------CC-C---CCCCCCCCCCcccCCCcEEEe
Confidence            358999997655555454555555555442  11                  12 2   348889998877773234899


Q ss_pred             EEcCCC
Q 048343          266 FYQGSG  271 (347)
Q Consensus       266 f~~g~~  271 (347)
                      ..++.+
T Consensus        58 ~~P~~~   63 (104)
T PF01307_consen   58 NSPNKL   63 (104)
T ss_pred             CCCCCC
Confidence            888765

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=84.76  E-value=3.3  Score=36.38  Aligned_cols=80  Identities=13%  Similarity=0.147  Sum_probs=49.1

Q ss_pred             EcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-H--HHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           50 HLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-F--SLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        50 ~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-f--e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      ..+++-|++--   +  ++..++|.+.++    ||+- |+.++.| |  .+||+-..          ++..=+++|-++.
T Consensus        24 ~w~~ea~~~Ak---~--e~KpIfl~ig~~----~C~w-ChvM~~esf~d~eVa~~lN----------~~FI~VkvDree~   83 (163)
T PF03190_consen   24 PWGEEALEKAK---K--ENKPIFLSIGYS----WCHW-CHVMERESFSDPEVAEYLN----------RNFIPVKVDREER   83 (163)
T ss_dssp             -SSHHHHHHHH---H--HT--EEEEEE-T----T-HH-HHHHHHHTTT-HHHHHHHH----------HH-EEEEEETTT-
T ss_pred             cCCHHHHHHHH---h--cCCcEEEEEEec----CCcc-hhhhcccCcCCHHHHHHHh----------CCEEEEEeccccC
Confidence            45556676653   2  345788999888    8999 7988753 3  34554442          2467789999999


Q ss_pred             cchHhHc--------CCCCCceEEEEcCCCCC
Q 048343          127 QSSFALF--------AVNSLPHIRLVGPDAKS  150 (347)
Q Consensus       127 ~~lf~~~--------~I~svP~l~~fpp~~g~  150 (347)
                      +++-+.|        |-.+.|+-++.-|. |+
T Consensus        84 Pdid~~y~~~~~~~~~~gGwPl~vfltPd-g~  114 (163)
T PF03190_consen   84 PDIDKIYMNAVQAMSGSGGWPLTVFLTPD-GK  114 (163)
T ss_dssp             HHHHHHHHHHHHHHHS---SSEEEEE-TT-S-
T ss_pred             ccHHHHHHHHHHHhcCCCCCCceEEECCC-CC
Confidence            9888887        78999999999985 44

; PDB: 3IRA_A.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=84.71  E-value=3  Score=33.08  Aligned_cols=45  Identities=9%  Similarity=0.089  Sum_probs=30.1

Q ss_pred             CCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEE
Q 048343           82 NKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRL  143 (347)
Q Consensus        82 ~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~  143 (347)
                      .||+. |++...-++.                .++-|-.+|++++++    +-+.-|-+++|.+++
T Consensus        25 ~~Cp~-C~~ak~lL~~----------------~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365        25 PQCGF-SARAVQILKA----------------CGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             CCCch-HHHHHHHHHH----------------cCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            48999 6766554432                135577889987654    344567789999965

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=83.27  E-value=1.9  Score=43.39  Aligned_cols=51  Identities=8%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc---hHhH---------cCCCCCc
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS---SFAL---------FAVNSLP  139 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~---lf~~---------~~I~svP  139 (347)
                      |+.||.+    ||+. |++...        +.++        .++-|-.+|+++.++   ..++         .|-+++|
T Consensus         4 V~vys~~----~Cp~-C~~aK~--------~L~~--------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP   62 (410)
T PRK12759          4 VRIYTKT----NCPF-CDLAKS--------WFGA--------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVP   62 (410)
T ss_pred             EEEEeCC----CCHH-HHHHHH--------HHHH--------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccC
Confidence            6678888    8999 675543        3332        257888999997663   2223         3788999


Q ss_pred             eEEE
Q 048343          140 HIRL  143 (347)
Q Consensus       140 ~l~~  143 (347)
                      .+++
T Consensus        63 ~ifi   66 (410)
T PRK12759         63 QIFV   66 (410)
T ss_pred             eEEE
Confidence            9976

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=82.93  E-value=2.7  Score=34.85  Aligned_cols=27  Identities=11%  Similarity=0.071  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHH
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASS  101 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s  101 (347)
                      .+++.|+.+    +|++ |+.+.|+++++.+.
T Consensus         7 ~~i~~f~D~----~Cp~-C~~~~~~l~~~~~~   33 (154)
T cd03023           7 VTIVEFFDY----NCGY-CKKLAPELEKLLKE   33 (154)
T ss_pred             EEEEEEECC----CChh-HHHhhHHHHHHHHH
Confidence            577788877    8999 89999999886643

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK10824 glutaredoxin-4; Provisional

Probab=81.17  E-value=3.1  Score=34.38  Aligned_cols=56  Identities=7%  Similarity=0.095  Sum_probs=33.9

Q ss_pred             EEEEecCCC-CCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEEE
Q 048343           72 LIFFDAHQL-HNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRLV  144 (347)
Q Consensus        72 vV~fTA~~~-~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~f  144 (347)
                      ||.|....| ..+|+. |+....-++..                ++-|..+|++++++    +-+.=|-.++|.+++=
T Consensus        17 Vvvf~Kg~~~~p~Cpy-c~~ak~lL~~~----------------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~   77 (115)
T PRK10824         17 ILLYMKGSPKLPSCGF-SAQAVQALSAC----------------GERFAYVDILQNPDIRAELPKYANWPTFPQLWVD   77 (115)
T ss_pred             EEEEECCCCCCCCCch-HHHHHHHHHHc----------------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEEC
Confidence            444555433 359999 68776554432                23344567776543    3344577899999874

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=81.04  E-value=4.6  Score=34.04  Aligned_cols=44  Identities=14%  Similarity=0.151  Sum_probs=33.3

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      -.+|+.|...    .|++ |+.+.+++.++-+.+..        .+++.|...++-.
T Consensus        13 ~~~v~~f~d~----~Cp~-C~~~~~~~~~~~~~~i~--------~~~v~~~~~~~~~   56 (162)
T PF13462_consen   13 PITVTEFFDF----QCPH-CAKFHEELEKLLKKYID--------PGKVKFVFRPVPL   56 (162)
T ss_dssp             SEEEEEEE-T----TSHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEESSS
T ss_pred             CeEEEEEECC----CCHh-HHHHHHHHhhhhhhccC--------CCceEEEEEEccc
Confidence            3567778776    7999 89999999988887742        4578888887743

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	2e-12

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Length = 178

 Score = 64.3 bits (156), Expect = 2e-12
 Identities = 18/176 (10%), Positives = 50/176 (28%), Gaps = 24/176 (13%)

Query: 24  LSTSDSNSDLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNK 83
           ++T+  N D + +L     + + GVI +                 Y  +++      ++ 
Sbjct: 1   MATASHNIDDILQL-----KDDTGVITVTADNYPLLSRG---VPGYFNILYITMRGTNSN 52

Query: 84  PE--LHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHI 141
                   +    +  VA    +    +        F  ++  E         + ++PH+
Sbjct: 53  GMSCQLCHDFEKTYHAVADVIRSQAPQS-----LNLFFTVDVNEVPQLVKDLKLQNVPHL 107

Query: 142 RLVGPDAKSLKDDSVQMEQGDF--------ARMAESMADFVQSRTKLTVGPIHHPP 189
            +  P   + +          +        A       DF+     +++  +    
Sbjct: 108 VVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISI-TVPQAF 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.98
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.76
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.71
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.7
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.68
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.64
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.64
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.64
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.64
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.64
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.63
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.63
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.63
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.62
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.62
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.61
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.61
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.61
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.61
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.6
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.6
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.6
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.59
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.59
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.59
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.59
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.59
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.58
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.58
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.58
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.58
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.58
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.57
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.57
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.57
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.57
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.56
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.56
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.56
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.56
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.55
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.55
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.55
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.55
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.55
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.54
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.53
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.53
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.53
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.52
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.52
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.52
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.52
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.52
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.52
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.52
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.51
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.51
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.5
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.5
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.5
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.5
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.49
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.49
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.49
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.49
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.48
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.47
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.47
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.46
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.46
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.46
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.46
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.45
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.45
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.45
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.44
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.44
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.43
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.42
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.42
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.42
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.41
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.4
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.4
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.4
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.39
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.38
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.38
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.06
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.36
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.35
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.35
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.35
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.34
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.33
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.31
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.3
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.3
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.29
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.29
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.28
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.26
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.25
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.23
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.22
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.14
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.14
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.14
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.11
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.68
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.03
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.01
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.0
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.98
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.94
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.92
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.91
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.91
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.88
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.88
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.87
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.86
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.86
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.85
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.85
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.83
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.81
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.81
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.8
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.8
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.8
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.78
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.78
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.76
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.75
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.73
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.73
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.71
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.71
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.71
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.67
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.67
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.66
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.61
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.6
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.6
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.59
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.58
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.58
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.55
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.54
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.51
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.51
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.5
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.49
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.48
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.46
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.45
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.8
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.41
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.41
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.39
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.38
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.38
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.37
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.36
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.32
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.32
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.27
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.26
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.21
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.19
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.19
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.18
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.46
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.14
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.11
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.11
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.07
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.03
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.91
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.9
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.89
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.89
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.89
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.88
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.87
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	97.87
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.83
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.82
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.82
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.8
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.78
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.75
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.75
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.73
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.69
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.67
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.67
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.64
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.57
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.51
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.49
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.49
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.47
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.47
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.46
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.46
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.44
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.42
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.4
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.38
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.37
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.35
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.22
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.18
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	97.18
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.12
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.06
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.03
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.01
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.0
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	96.95
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	96.95
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	96.93
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.93
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.92
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	96.89
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	96.86
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	96.82
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	96.77
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	96.74
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.73
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	96.71
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	96.7
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.63
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	96.58
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.5
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	96.32
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	96.23
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.19
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	96.05
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	95.97
3me7_A	170	Putative uncharacterized protein; electron transfe	95.95
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	95.95
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	95.95
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.92
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	95.91
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	95.89
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	95.79
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	95.52
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	95.33
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	95.3
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	95.29
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	95.15
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	95.15
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	95.15
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	95.09
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	95.05
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	94.92
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	94.86
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	94.85
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	94.83
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	94.77
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	94.69
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	94.64
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	94.6
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	94.6
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	94.54
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	94.42
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	94.42
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	93.23
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	92.98
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	92.9
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	92.8
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	92.67
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	92.55
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	92.54
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	92.14
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	91.92
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	91.58
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	91.56
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	91.49
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	91.22
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	91.21
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	89.26
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	89.17
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	89.15
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	88.79
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	88.72
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	88.0
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	85.87
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	84.49
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	82.62
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	80.11

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.98  E-value=2.7e-32  Score=240.81  Aligned_cols=150  Identities=12%  Similarity=0.211  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHhcCCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCC---CCChhhcccchHHHHHHHHHhhhcCCC
Q 048343           32 DLVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLH---NKPELHLQELRNEFSLVASSFIANNVD  108 (347)
Q Consensus        32 ~~~~~L~~l~~~s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~---~~C~~cC~~l~pefe~vA~s~~~~~p~  108 (347)
                      ++.++|++++.  +++||+||++||++++   .++|+|++||+|||++|+   .||++ |+++.|+|+++|++|.+++| 
T Consensus         6 ~~~~~l~~l~~--~~~vi~lt~~nF~~~v---~~~~~~~vvV~F~A~~~~~~~~wCgp-Ck~l~P~~e~lA~~~~~~~~-   78 (178)
T 3ga4_A            6 HNIDDILQLKD--DTGVITVTADNYPLLS---RGVPGYFNILYITMRGTNSNGMSCQL-CHDFEKTYHAVADVIRSQAP-   78 (178)
T ss_dssp             --CHHHHTTCC--TTSEEECCTTTHHHHT---TCCTTCEEEEEEECCSBCTTSCBCHH-HHHHHHHHHHHHHHHHHHCT-
T ss_pred             hhHHHHHHhhc--cCCCEECCHHHHHHHH---cccCCCcEEEEEeCCCCCCCCCCChh-HHHHHHHHHHHHHHhhhccC-
Confidence            67789999876  5789999999999987   678999999999997765   69999 89999999999999976654 


Q ss_pred             CCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC----CCcccccccc---cc-ccCHHHHHHHHHhhcCC
Q 048343          109 NPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL----KDDSVQMEQG---DF-ARMAESMADFVQSRTKL  180 (347)
Q Consensus       109 ~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~----~~~~~~~~~~---~~-~~~a~~l~~fi~~~t~~  180 (347)
                          +++++|++||+|++++++++|||+++||+++|+||.+..    .-...+.++|   .+ ++++|+|++||+++||+
T Consensus        79 ----~~~v~f~kvD~d~~~~la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~  154 (178)
T 3ga4_A           79 ----QSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI  154 (178)
T ss_dssp             ----TCCEEEEEEETTTCHHHHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred             ----CCCEEEEEEECccCHHHHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence                257999999999999999999999999999999974332    0001122333   23 79999999999999999


Q ss_pred             CCCcccCCCCchh
Q 048343          181 TVGPIHHPPLLSK  193 (347)
Q Consensus       181 ~i~~i~~p~~~~~  193 (347)
                      ++ +|.||+||+.
T Consensus       155 ~i-~I~rp~ny~~  166 (178)
T 3ga4_A          155 SI-TVPQAFNVQE  166 (178)
T ss_dssp             CC-CCCCSCC---
T ss_pred             Cc-cccCCCChHH
Confidence            98 9999999986

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.76  E-value=1e-17  Score=137.83  Aligned_cols=114  Identities=9%  Similarity=0.070  Sum_probs=94.8

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .++.|++||+++|++.+  .+.  +..++|.|||+    ||++ |+++.|+|+++|+.+....     ..+++.|+++|+
T Consensus        13 ~~~~v~~l~~~~f~~~~--~~~--~~~vlv~F~a~----wC~~-C~~~~p~~~~la~~~~~~~-----~~~~v~~~~vd~   78 (127)
T 3h79_A           13 RPSRVVELTDETFDSIV--MDP--EKDVFVLYYVP----WSRH-SVAAMRLWDDLSMSQSQKR-----NHLTFVAARIDG   78 (127)
T ss_dssp             CCCCCEECCTTTHHHHH--TCT--TCEEEEEEECT----TCHH-HHHHHHHHHHHHHHHHTST-----TTTTEEEEEEET
T ss_pred             CCCceEECChhhHHHHH--hCC--CCCEEEEEECC----ccHH-HHHHhHHHHHHHHHHHhcc-----cCCCeEEEEEEc
Confidence            35679999999999998  222  44799999999    8999 8999999999999885431     245799999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++++++++++|+++|++++|+++. ..     ....+.+.+++++|.+||++.
T Consensus        79 ~~~~~l~~~~~v~~~Pt~~~~~~g~-~~-----~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           79 EKYPDVIERMRVSGFPTMRYYTRID-KQ-----EPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEECSSC-SS-----SCEECCSCCCHHHHHHHHHHH
T ss_pred             cccHhHHHhcCCccCCEEEEEeCCC-CC-----CceEecCCccHHHHHHHHHhc
Confidence            9999999999999999999999752 21     113567789999999999875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.71  E-value=1.2e-17  Score=141.35  Aligned_cols=107  Identities=7%  Similarity=0.070  Sum_probs=90.3

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCC-ChhhcccchHHHHHHHHHhhhcCCCCCCCCCc-eEEEEEEcc
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNK-PELHLQELRNEFSLVASSFIANNVDNPSSRGK-LFFCYLEFK  124 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~-C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~-v~F~~vD~~  124 (347)
                      |+.++|++||++.+   .+  +..++|+|||+|   | |++ |+.+.|.++++|++|          .++ +.|+++|+|
T Consensus        18 g~~~~t~~~F~~~v---~~--~~~vlVdF~a~~---crCgp-Ck~iaPvleela~e~----------~g~~v~~~KVdvD   78 (140)
T 2qgv_A           18 GWTPVSESRLDDWL---TQ--APDGVVLLSSDP---KRTPE-VSDNPVMIGELLHEF----------PDYTWQVAIADLE   78 (140)
T ss_dssp             TCEECCHHHHHHHH---HT--CSSEEEEECCCT---TTCTT-TTHHHHHHHHHHTTC----------TTSCCEEEECCHH
T ss_pred             CCccCCHHHHHHHH---hC--CCCEEEEEeCCc---ccCCc-HHHHHhHHHHHHHHc----------CCCeEEEEEEECC
Confidence            89999999999998   22  225889999983   2 999 899999999999887          356 999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      +++++.++|||+++||+++|+.|  +..      .+..|..+.+++.+||++.+..
T Consensus        79 e~~~lA~~ygV~sIPTlilFk~G--~~v------~~~~G~~~k~~l~~~i~~~l~~  126 (140)
T 2qgv_A           79 QSEAIGDRFGAFRFPATLVFTGG--NYR------GVLNGIHPWAELINLMRGLVEP  126 (140)
T ss_dssp             HHHHHHHHHTCCSSSEEEEEETT--EEE------EEEESCCCHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHcCCccCCEEEEEECC--EEE------EEEecCCCHHHHHHHHHHHhcC
Confidence            99999999999999999999964  432      4456778899999999987753

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.70  E-value=3.1e-17  Score=138.40  Aligned_cols=107  Identities=14%  Similarity=0.187  Sum_probs=89.2

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCC--hhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKP--ELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C--~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      ..|..++|++||++.+.  ++  +-.++|+|||+    ||  ++ |+.+.|.++++|++|          .+++.|+++|
T Consensus        14 ~~g~~~vt~~~F~~~v~--~~--~~~vlVdF~A~----wCr~gp-Ck~iaPvleela~e~----------~~~v~~~KVd   74 (137)
T 2qsi_A           14 PNAPTLVDEATVDDFIA--HS--GKIVVLFFRGD----AVRFPE-AADLAVVLPELINAF----------PGRLVAAEVA   74 (137)
T ss_dssp             ---CEEECTTTHHHHHH--TS--SSEEEEEECCC----TTTCTT-HHHHHHHHHHHHHTS----------TTTEEEEEEC
T ss_pred             hcCCcccCHhHHHHHHh--cC--CCcEEEEEeCC----ccCCCc-hhhHHhHHHHHHHHc----------cCCcEEEEEE
Confidence            56889999999999882  32  22699999999    78  99 899999999999987          3589999999


Q ss_pred             ccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          123 FKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       123 ~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +|+++++.++|||+++||+++|+.|  +..      .+..|..+.+++.++|++.+
T Consensus        75 vDe~~~la~~ygV~siPTlilFkdG--~~v------~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           75 AEAERGLMARFGVAVCPSLAVVQPE--RTL------GVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             GGGHHHHHHHHTCCSSSEEEEEECC--EEE------EEEESCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCccCCEEEEEECC--EEE------EEEeCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999964  432      44567788899999998766

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.68  E-value=1.1e-16  Score=128.83  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             eEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |.++++ ++|++.+   +...+..++|.|||+    ||++ |+.+.|.++++|+.+           +++.|+++|++++
T Consensus         2 V~~i~~~~~f~~~l---~~~~~k~vvv~F~a~----wC~~-C~~~~p~~~~~~~~~-----------~~~~~~~vd~d~~   62 (105)
T 3zzx_A            2 VYQVKDQEDFTKQL---NEAGNKLVVIDFYAT----WCGP-CKMIAPKLEELSQSM-----------SDVVFLKVDVDEC   62 (105)
T ss_dssp             CEECCSHHHHHHHH---HHTTTSEEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTEEEEEEETTTC
T ss_pred             eEEeCCHHHHHHHH---HhcCCCEEEEEEECC----CCCC-ccCCCcchhhhhhcc-----------CCeEEEEEecccC
Confidence            567765 7899988   223355799999999    8999 899999999999765           2588999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ++++++|+|+++||+++|+.  |+..      .+..| .+.++|.+||+++
T Consensus        63 ~~l~~~~~V~~~PT~~~~~~--G~~v------~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           63 EDIAQDNQIACMPTFLFMKN--GQKL------DSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeecEEEEEEC--CEEE------EEEeC-cCHHHHHHHHHhc
Confidence            99999999999999999985  3432      33344 5789999999875

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.64  E-value=1.1e-15  Score=122.64  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=92.9

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|+++|+++|++.+   +.  +..++|+|+|+    ||++ |+++.|+++++++.+...       +.++.|+++|.+
T Consensus         6 ~~~v~~l~~~~~~~~~---~~--~~~~lv~f~~~----~C~~-C~~~~~~~~~~~~~~~~~-------~~~v~~~~vd~~   68 (120)
T 1mek_A            6 EDHVLVLRKSNFAEAL---AA--HKYLLVEFYAP----WCGH-CKALAPEYAKAAGKLKAE-------GSEIRLAKVDAT   68 (120)
T ss_dssp             ETTEEECCTTTHHHHH---HH--CSEEEEEEECS----SCST-TSTTHHHHHHHHHTTTTT-------CCCCBCEEEETT
T ss_pred             CCCcEEechhhHHHHH---cc--CCeEEEEEECC----CCHH-HHHhhHHHHHHHHHHhcc-------CCcEEEEEEcCC
Confidence            4679999999999987   32  34789999998    8999 899999999999887431       346999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++++++++++++|++++|++|  +..    ....+.+..+.+++.+|+++.++.
T Consensus        69 ~~~~~~~~~~v~~~Pt~~~~~~g--~~~----~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           69 EESDLAQQYGVRGYPTIKFFRNG--DTA----SPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             TCCSSHHHHTCCSSSEEEEEESS--CSS----SCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             CCHHHHHHCCCCcccEEEEEeCC--CcC----CcccccCccCHHHHHHHHHhccCC
Confidence            99999999999999999999754  321    113455678899999999998774

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.64  E-value=8.3e-16  Score=121.98  Aligned_cols=107  Identities=13%  Similarity=0.123  Sum_probs=89.3

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++.++++|+++|++.+   .   +..++|.|||+    ||++ |+++.|+++++++.+..+       .+++.|+.+|++
T Consensus         4 ~~~v~~l~~~~~~~~~---~---~~~~lv~f~~~----~C~~-C~~~~~~~~~~~~~~~~~-------~~~~~~~~vd~~   65 (111)
T 3uvt_A            4 GSTVLALTENNFDDTI---A---EGITFIKFYAP----WCGH-CKTLAPTWEELSKKEFPG-------LAGVKIAEVDCT   65 (111)
T ss_dssp             -CCSEECCTTTHHHHH---H---SSEEEEEEECS----SCHH-HHHHHHHHHHHHTCCCCC--------CCEEEEEEETT
T ss_pred             CCcceEcChhhHHHHh---c---CCcEEEEEECC----CChh-HHHhhHHHHHHHHHhhcc-------CCceEEEEEecc
Confidence            3579999999999998   3   33789999999    8999 899999999999876321       247999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ++++++++++++++|++++|++|  +.      ...+.+..+.+++.+||+++
T Consensus        66 ~~~~l~~~~~v~~~Pt~~~~~~g--~~------~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           66 AERNICSKYSVRGYPTLLLFRGG--KK------VSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEETT--EE------EEEECSCCSHHHHHHHHHHH
T ss_pred             ccHhHHHhcCCCcccEEEEEeCC--cE------EEeccCCcCHHHHHHHHHhc
Confidence            99999999999999999999753  32      24556778899999999875

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=2.4e-15  Score=123.40  Aligned_cols=109  Identities=21%  Similarity=0.205  Sum_probs=90.6

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|+++|+++|++.+  .+.  +..++|.|||+    ||++ |+++.|+++++++.+          .+++.|+.+|++
T Consensus        16 ~~~v~~l~~~~f~~~~--~~~--~~~~lv~f~a~----wC~~-C~~~~~~~~~~~~~~----------~~~~~~~~vd~~   76 (130)
T 2dml_A           16 SDDVIELTPSNFNREV--IQS--DGLWLVEFYAP----WCGH-CQRLTPEWKKAATAL----------KDVVKVGAVNAD   76 (130)
T ss_dssp             TSSSEECCTTTHHHHT--TTC--SSCEEEEEECT----TCST-TGGGHHHHHHHHHHT----------TTTSEEEEEETT
T ss_pred             CCCcEECCHHHHHHHH--hcC--CCeEEEEEECC----CCHH-HHhhCHHHHHHHHHh----------cCceEEEEEeCC
Confidence            4579999999999976  232  44799999999    8999 899999999999876          235999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++.++|+++++|++++|.++ +..      ...+.+..+.+++.+|+.+.+.
T Consensus        77 ~~~~l~~~~~v~~~Pt~~~~~~~-~~~------~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           77 KHQSLGGQYGVQGFPTIKIFGAN-KNK------PEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             TCHHHHHHHTCCSSSEEEEESSC-TTS------CEECCSCCSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCCccCEEEEEeCC-CCe------EEEeecCCCHHHHHHHHHHHHh
Confidence            99999999999999999999875 231      2445667889999999988753

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.64  E-value=1.3e-15  Score=121.03  Aligned_cols=107  Identities=10%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..++++|+++|++.+  .+.  +..++|.|||+    ||++ |+.+.|+++++++.+          ++++.|+++|+++
T Consensus         4 ~~v~~l~~~~~~~~~--~~~--~~~vlv~f~a~----~C~~-C~~~~~~~~~~~~~~----------~~~v~~~~vd~~~   64 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLI--YDE--GKACLVMFSRK----NCHV-CQKVTPVLEELRLNY----------EESFGFYYVDVEE   64 (111)
T ss_dssp             CCSEECCHHHHHHHH--TTS--CCCEEEEEECS----SCHH-HHHHHHHHHHHHHHT----------TTTSEEEEEETTT
T ss_pred             CcceecCHHHHHHHH--Hhc--CCEEEEEEeCC----CChh-HHHHHHHHHHHHHHc----------CCceEEEEEECCc
Confidence            469999999999997  222  45799999999    8999 899999999999886          2369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++++|+++++|++++|+.  |+.      ...+.+..+.+++.+||++.++
T Consensus        65 ~~~l~~~~~v~~~Pt~~~~~~--g~~------~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           65 EKTLFQRFSLKGVPQILYFKD--GEY------KGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             CHHHHHHTTCCSSCEEEEEET--TEE------EEEEESSCCHHHHHHHHHHHHH
T ss_pred             ChhHHHhcCCCcCCEEEEEEC--CEE------EEEEeccCCHHHHHHHHHHHhc
Confidence            999999999999999999964  333      2445667789999999998754

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.64  E-value=1.9e-15  Score=119.62  Aligned_cols=107  Identities=17%  Similarity=0.218  Sum_probs=88.7

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ++|+++|+++|++.+  .+.  +..++|.|||+    ||++ |+++.|+++++++.+          .+++.|+.+|+++
T Consensus         2 ~~v~~l~~~~f~~~~--~~~--~~~~~v~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~v~~~~   62 (108)
T 2trx_A            2 DKIIHLTDDSFDTDV--LKA--DGAILVDFWAE----WCGP-CKMIAPILDEIADEY----------QGKLTVAKLNIDQ   62 (108)
T ss_dssp             TTEEECCTTTHHHHT--TTC--SSEEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTEEEEEEETTT
T ss_pred             CcceecchhhHHHHH--Hhc--CCeEEEEEECC----CCHh-HHHHHHHHHHHHHHh----------CCCcEEEEEECCC
Confidence            579999999999776  222  44799999998    8999 899999999999876          2369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++.++++++++|++++|+.  |+..      ..+.|..+.+++.+||++.++
T Consensus        63 ~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           63 NPGTAPKYGIRGIPTLLLFKN--GEVA------ATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             CTTHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHHC
T ss_pred             CHHHHHHcCCcccCEEEEEeC--CEEE------EEEecCCCHHHHHHHHHHhhC
Confidence            999999999999999999953  4432      344566789999999988653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.7e-15  Score=123.19  Aligned_cols=114  Identities=16%  Similarity=0.149  Sum_probs=94.1

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      ++++|+++|+++|++.+  .+.  +..++|.|||+    ||++ |+++.|+++++++.+....      .+++.|+.+|+
T Consensus         5 ~~~~v~~l~~~~~~~~~--~~~--~~~~lv~f~a~----wC~~-C~~~~~~~~~~~~~~~~~~------~~~~~~~~vd~   69 (133)
T 1x5d_A            5 SSGDVIELTDDSFDKNV--LDS--EDVWMVEFYAP----WCGH-CKNLEPEWAAAASEVKEQT------KGKVKLAAVDA   69 (133)
T ss_dssp             SCCSCEECCTTHHHHHT--TTS--SSEEEEEEECT----TCHH-HHTHHHHHHHHHHHHHHHT------TTSEEEEEEET
T ss_pred             CCCcCEEcCHhhHHHHH--hcC--CCeEEEEEECC----CCHH-HHhhcHHHHHHHHHHHhhc------CCcEEEEEEEC
Confidence            34579999999999986  222  44799999999    8999 8999999999999885321      24699999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      +++++++++|+++++|++++|.+|  +.      ...+.+..+.+++.+||++.++.
T Consensus        70 ~~~~~l~~~~~v~~~Pt~~~~~~g--~~------~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           70 TVNQVLASRYGIRGFPTIKIFQKG--ES------PVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             TTCCHHHHHHTCCSSSEEEEEETT--EE------EEEECSCCSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHhCCCCeeCeEEEEeCC--Cc------eEEecCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999999873  32      24456678899999999988764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.63  E-value=2.4e-15  Score=125.26  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             CCCCeEEcChhhHHHHhcccCCC---------CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCC
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTP---------RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRG  114 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~---------R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~  114 (347)
                      .++.++++|+++|++.+.  +..         ++..++|.|||+    ||++ |+.+.|+++++++.+          .+
T Consensus        20 ~~~~v~~l~~~~f~~~l~--~~~~~~~~l~~~~~k~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~----------~~   82 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIA--DYENHSKEWKYLGDKPAIVDFYAD----WCGP-CKMVAPILEELSKEY----------AG   82 (141)
T ss_dssp             ---CCEECCHHHHHHHTC--CCSSCCCCCCCCCSSCEEEEEECT----TCTT-HHHHHHHHHHHHHHT----------TT
T ss_pred             CCCCcccccHHHHHHHhh--ccccchhHHHHhCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------cC
Confidence            345799999999999872  211         255799999998    8999 899999999999887          23


Q ss_pred             ceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          115 KLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       115 ~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++.|+.+|++++++++++|+++++|++++|.++ |+.       ..+.+..+.+++.+||++.+.
T Consensus        83 ~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~-g~~-------~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           83 KIYIYKVNVDKEPELARDFGIQSIPTIWFVPMK-GEP-------QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCCSSSEEEEECSS-SCC-------EEEESCCCHHHHHHHHHHTTC
T ss_pred             ceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCC-CCE-------EEEeCCCCHHHHHHHHHHHHc
Confidence            699999999999999999999999999999764 332       234567789999999998765

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.63  E-value=1.1e-15  Score=131.46  Aligned_cols=124  Identities=11%  Similarity=0.093  Sum_probs=91.5

Q ss_pred             eEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +.+|++ ++|++.+  .+ ..+..+||.|||+    ||++ |+.+.|.++++|+++          ++++.|+++|+|++
T Consensus        23 v~~l~t~~~f~~~v--~~-~~~k~VVVdF~A~----WCgP-Ck~m~PvleelA~e~----------~~~v~f~kVDVDe~   84 (160)
T 2av4_A           23 LQHLNSGWAVDQAI--VN-EDERLVCIRFGHD----YDPD-CMKMDELLYKVADDI----------KNFCVIYLVDITEV   84 (160)
T ss_dssp             CEECCSHHHHHHHH--HH-CSSSEEEEEEECT----TSHH-HHHHHHHHHHHHHHH----------TTTEEEEEEETTTC
T ss_pred             hhccCCHHHHHHHH--Hh-cCCCEEEEEEECC----CChh-HHHHHHHHHHHHHHc----------cCCcEEEEEECCCC
Confidence            667776 7999877  22 1244799999999    9999 899999999999987          24689999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCC--C-ccccccccccccC-HHHHHHHHHhhc-----CCCCCcccCCCCchh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLK--D-DSVQMEQGDFARM-AESMADFVQSRT-----KLTVGPIHHPPLLSK  193 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~--~-~~~~~~~~~~~~~-a~~l~~fi~~~t-----~~~i~~i~~p~~~~~  193 (347)
                      +++.++|+|+++||+++|..|  +..  + ......+..+..+ +++|.++|++..     |.-  -+..|.||+.
T Consensus        85 ~e~a~~y~V~siPT~~fFk~G--~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~g~~--~v~~p~~~~~  156 (160)
T 2av4_A           85 PDFNTMYELYDPVSVMFFYRN--KHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARKGRG--LVISPKDYST  156 (160)
T ss_dssp             CTTTTTTTCCSSEEEEEEETT--EEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHTTCS--EEECSSCC--
T ss_pred             HHHHHHcCCCCCCEEEEEECC--EEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhcCCe--EEECCCccch
Confidence            999999999999999999864  321  0 0000113345555 888988887543     432  4667888865

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.62  E-value=1.9e-15  Score=119.33  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=90.0

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +++.++++|+++|++.+   +.  +..++|.|||+    ||++ |+.+.|.++++++.+          .+++.|+.+|.
T Consensus         2 ~~~~v~~l~~~~~~~~~---~~--~~~~lv~f~~~----~C~~-C~~~~~~~~~~~~~~----------~~~~~~~~v~~   61 (109)
T 3tco_A            2 KEDVTLVLTEENFDEVI---RN--NKLVLVDCWAE----WCAP-CHLYEPIYKKVAEKY----------KGKAVFGRLNV   61 (109)
T ss_dssp             -CCCCEECCTTTHHHHH---HH--SSEEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTSEEEEEET
T ss_pred             CCCeEEEecHHHHHHHH---hc--CCeEEEEEECC----CCHH-HHhhhHHHHHHHHHh----------CCCceEEEEcc
Confidence            35689999999999998   32  34799999998    8999 899999999999886          23699999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++++++.++|+++++|++++|+.  |+..      ..+.|..+.+++.++|++.+
T Consensus        62 ~~~~~~~~~~~i~~~Pt~~~~~~--g~~~------~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           62 DENQKIADKYSVLNIPTTLIFVN--GQLV------DSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHC
T ss_pred             ccCHHHHHhcCcccCCEEEEEcC--CcEE------EeeeccCCHHHHHHHHHHHh
Confidence            99999999999999999999954  3332      44566778999999998864

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.62  E-value=5.6e-15  Score=116.37  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=87.8

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ++|+++++++|++.+  .+  ++..++|.|+++    ||++ |+++.|+++++++.+.          +++.|+.+|+++
T Consensus         2 ~~v~~l~~~~~~~~~--~~--~~~~~lv~f~~~----~C~~-C~~~~~~~~~~~~~~~----------~~~~~~~v~~~~   62 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDV--LK--ASGLVLVDFWAE----WCGP-CKMIGPALGEIGKEFA----------GKVTVAKVNIDD   62 (107)
T ss_dssp             CCEEECCTTTHHHHT--TT--CSSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHT----------TSEEEEEEETTT
T ss_pred             CceeecchhhhhHHH--Hh--CCCEEEEEEECC----CChh-HHHHhHHHHHHHHHhC----------CcEEEEEEECCC
Confidence            579999999999876  22  244799999998    8999 8999999999998872          369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++++++++++++|++++|+.  |+..      ..+.|..+.+++.+||++.
T Consensus        63 ~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           63 NPETPNAYQVRSIPTLMLVRD--GKVI------DKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             CCHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHT
T ss_pred             CHHHHHhcCCCccCEEEEEeC--CEEE------EEecCCCCHHHHHHHHHhc
Confidence            999999999999999999953  3432      3445667899999999875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.6e-15  Score=124.12  Aligned_cols=108  Identities=17%  Similarity=0.154  Sum_probs=91.5

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|+++|+++|++.+   ++    .++|.|||+    ||++ |+++.|+++++++.+..         .++.|+.+|++
T Consensus         6 ~~~v~~l~~~~f~~~~---~~----~vlv~f~a~----wC~~-C~~~~p~~~~~~~~~~~---------~~v~~~~vd~~   64 (126)
T 1x5e_A            6 SGNVRVITDENWRELL---EG----DWMIEFYAP----WCPA-CQNLQPEWESFAEWGED---------LEVNIAKVDVT   64 (126)
T ss_dssp             CCSEEECCTTTHHHHT---SS----EEEEEEECS----SCHH-HHHHHHHHHHHHHHHGG---------GTCEEEEEETT
T ss_pred             CCccEEecHHHHHHHh---CC----CEEEEEECC----CCHH-HHHHhHHHHHHHHHhcc---------CCeEEEEEECc
Confidence            4679999999999987   44    289999999    8999 89999999999988631         26999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++++++++|+++++|++++|+.  |+.       ..+.+..+.+++.+||++.++..+
T Consensus        65 ~~~~~~~~~~v~~~Pt~~~~~~--G~~-------~~~~G~~~~~~l~~~l~~~~~~~~  113 (126)
T 1x5e_A           65 EQPGLSGRFIINALPTIYHCKD--GEF-------RRYQGPRTKKDFINFISDKEWKSI  113 (126)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEET--TEE-------EECCSCCCHHHHHHHHHTCGGGGS
T ss_pred             CCHHHHHHcCCcccCEEEEEeC--CeE-------EEeecCCCHHHHHHHHHHHhhccC
Confidence            9999999999999999999954  332       345667889999999999887554

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.61  E-value=3.7e-15  Score=117.19  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+++++|+++|++.+   +   +..++|.|+|+    ||++ |+.+.|+++++++.+          ++++.|+.+|++
T Consensus         2 ~~~v~~l~~~~~~~~~---~---~~~~lv~f~~~----~C~~-C~~~~~~~~~~~~~~----------~~~~~~~~v~~~   60 (106)
T 3die_A            2 HMAIVKVTDADFDSKV---E---SGVQLVDFWAT----ACGP-CKMIAPVLEELAADY----------EGKADILKLDVD   60 (106)
T ss_dssp             CCCCEECCTTTHHHHS---C---SSEEEEEEECS----BCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEETT
T ss_pred             CcceEECCHHHHHHHh---c---CCcEEEEEECC----CCHH-HHHHhHHHHHHHHHh----------cCCcEEEEEECC
Confidence            3469999999999986   2   34799999999    8999 899999999999987          235999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ++++++++++++++|++++|+.  |+..      ..+.|..+.+++.+||++.
T Consensus        61 ~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           61 ENPSTAAKYEVMSIPTLIVFKD--GQPV------DKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             TCHHHHHHTTCCSBSEEEEEET--TEEE------EEEESCCCHHHHHHHHHTT
T ss_pred             cCHHHHHhCCCcccCEEEEEeC--CeEE------EEEeCCCCHHHHHHHHHHh
Confidence            9999999999999999999974  3332      3455677899999999875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.61  E-value=4.3e-15  Score=118.55  Aligned_cols=109  Identities=18%  Similarity=0.279  Sum_probs=89.9

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|+++|+++|++.+  .+  ++..++|.|+++    ||++ |+.+.|+++++++.+          .+++.|+.+|++
T Consensus         6 ~~~v~~l~~~~~~~~~--~~--~~~~~lv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~v~~~~v~~~   66 (115)
T 1thx_A            6 SKGVITITDAEFESEV--LK--AEQPVLVYFWAS----WCGP-CQLMSPLINLAANTY----------SDRLKVVKLEID   66 (115)
T ss_dssp             CCSEEECCGGGHHHHT--TT--CSSCEEEEEECT----TCTT-HHHHHHHHHHHHHHT----------TTTCEEEEEEST
T ss_pred             cCceEEeeccchhhHh--hc--CCceEEEEEECC----CCHH-HHHhHHHHHHHHHHh----------CCcEEEEEEEcC
Confidence            3579999999999876  22  244799999998    8999 899999999999876          235999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++++++++++++|++++|+.  |+..      ..+.|..+.+++.+||++.++.
T Consensus        67 ~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           67 PNPTTVKKYKVEGVPALRLVKG--EQIL------DSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHcCCCceeEEEEEcC--CEEE------EEecCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999953  4432      3445667899999999987653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.61  E-value=4.7e-15  Score=123.46  Aligned_cols=112  Identities=14%  Similarity=0.117  Sum_probs=91.8

Q ss_pred             CCCeEEcChhhHHHHhcccCC---------CCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKT---------PRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGK  115 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~---------~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~  115 (347)
                      ...|+++|+++|++.+.  +.         .++..++|.|||+    ||++ |+++.|+++++++.+          +++
T Consensus         8 ~~~v~~l~~~~f~~~v~--~~~~~~~~~~~~~~k~~lv~f~a~----wC~~-C~~~~~~l~~l~~~~----------~~~   70 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVY--NFEKNPEEWKYEGDKPAIVDFYAD----WCGP-CKMVAPILDELAKEY----------DGQ   70 (136)
T ss_dssp             TTSEEEECHHHHHHHTB--CTTTCSSSCCBCCSSCEEEEEECT----TSHH-HHHHHHHHHHHHHHT----------TTT
T ss_pred             CCceEEecchHHHHHHH--hhccCccceeecCCCEEEEEEECC----cCHH-HHHHHHHHHHHHHHh----------cCC
Confidence            35699999999999872  21         1345799999998    8999 899999999999886          235


Q ss_pred             eEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          116 LFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       116 v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +.|+.+|+++++++.++|+++++|++++|.++ |+.       ..+.+..+.+++.+||++..+..
T Consensus        71 v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~-G~~-------~~~~G~~~~~~l~~~l~~~~~~~  128 (136)
T 2l5l_A           71 IVIYKVDTEKEQELAGAFGIRSIPSILFIPME-GKP-------EMAQGAMPKASFKKAIDEFLLKK  128 (136)
T ss_dssp             CEEEEEETTTCHHHHHHTTCCSSCEEEEECSS-SCC-------EEEESCCCHHHHHHHHHHHHTSC
T ss_pred             EEEEEEeCCCCHHHHHHcCCCCCCEEEEECCC-CcE-------EEEeCCCCHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999543 333       13456688999999999987753

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.60  E-value=6.4e-15  Score=118.27  Aligned_cols=105  Identities=15%  Similarity=0.102  Sum_probs=89.4

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |+++|+++|++.+   +   +..++|.|+|+    ||++ |+++.|+++++++.+.          +++.|+.+|+++++
T Consensus         3 v~~l~~~~~~~~~---~---~~~~lv~f~a~----wC~~-C~~~~~~l~~~~~~~~----------~~v~~~~vd~~~~~   61 (112)
T 2voc_A            3 IVKATDQSFSAET---S---EGVVLADFWAP----WCGP-SKMIAPVLEELDQEMG----------DKLKIVKIDVDENQ   61 (112)
T ss_dssp             CEECCTTTHHHHH---S---SSEEEEEEECT----TBGG-GGGHHHHHHHHHHHHT----------TTCEEEEEETTTCC
T ss_pred             eEEecHHHHHHHh---C---CCEEEEEEECC----CCHH-HHHHHHHHHHHHHHhC----------CCcEEEEEECCCCH
Confidence            7899999999986   2   33789999998    8999 8999999999998872          36999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      ++.++++++++|++++|+.  |+..      ..+.|..+.+++.+|+++.++..
T Consensus        62 ~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           62 ETAGKYGVMSIPTLLVLKD--GEVV------ETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             SHHHHTTCCSBSEEEEEET--TEEE------EEEESCCCHHHHHHHHHTTSCSC
T ss_pred             HHHHHcCCCcccEEEEEeC--CEEE------EEEeCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999953  4432      44567788999999999987754

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.60  E-value=4.4e-15  Score=122.85  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=88.8

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ++|+++|+++|++.+  .+  ++..++|+|||+    ||++ |+++.|+++++++.+          .+++.|+.+|+++
T Consensus        22 ~~v~~l~~~~f~~~~--~~--~~k~vlv~F~a~----wC~~-C~~~~p~l~~l~~~~----------~~~v~~~~vd~~~   82 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDV--LK--ADGAILVDFWAE----WCGP-AKMIAPILDEIADEY----------QGKLTVAKLNIDQ   82 (128)
T ss_dssp             CCSEEECTTTHHHHT--TT--CSSEEEEEEECS----SCHH-HHHTHHHHHHHHHHT----------TTTEEEEEEETTT
T ss_pred             cccEecChhhHHHHH--Hh--cCCEEEEEEECC----CCHH-HHHHhHHHHHHHHHh----------cCCeEEEEEECCC
Confidence            469999999999775  23  245799999999    8999 899999999999876          2369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++++|+++++|++++|+.  |+..      ..+.|..+.+++.+||++.++
T Consensus        83 ~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           83 NPGTAPKYGIRGIPTLLLFKN--GEVA------ATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             CCTTSGGGTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHHC
T ss_pred             CHHHHHHcCCCccCEEEEEeC--CEEE------EEEcCCCCHHHHHHHHHHhhC
Confidence            999999999999999999953  4432      344566789999999988653

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=6e-15  Score=122.51  Aligned_cols=113  Identities=19%  Similarity=0.221  Sum_probs=95.0

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +++.|+++|+++|++.+   ..  +..++|+|||+    ||++ |+++.|+++++++.+...       +.++.|+++|+
T Consensus        15 ~~~~v~~l~~~~~~~~~---~~--~~~vlv~f~a~----wC~~-C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~   77 (140)
T 2dj1_A           15 EENGVWVLNDGNFDNFV---AD--KDTVLLEFYAP----WCGH-CKQFAPEYEKIASTLKDN-------DPPIAVAKIDA   77 (140)
T ss_dssp             EETTEEECCTTTHHHHH---TT--CSEEEEEECCT----TCHH-HHTTHHHHHHHHHHHHSS-------SSCCEEEEECT
T ss_pred             CCCCCEEcChHhHHHHH---hc--CCeEEEEEECC----CCHH-HHHhhHHHHHHHHHHhcc-------CCceEEEEEeC
Confidence            45679999999999987   33  34799999998    8999 899999999999988532       23599999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++++++.++|+++++|++++|+.  |+ .      ..+.+..+.++|.+||++.++...
T Consensus        78 ~~~~~~~~~~~v~~~Pt~~~~~~--G~-~------~~~~g~~~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           78 TSASMLASKFDVSGYPTIKILKK--GQ-A------VDYDGSRTQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEET--TE-E------EECCSCCCHHHHHHHHHHHHSSSC
T ss_pred             cccHHHHHHCCCCccCeEEEEEC--Cc-E------EEcCCCCCHHHHHHHHHHhcCCCC
Confidence            99999999999999999999964  33 2      345677889999999999988654

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.59  E-value=3.8e-15  Score=122.61  Aligned_cols=116  Identities=12%  Similarity=0.142  Sum_probs=93.9

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +.+.|+++|+++|++.+   .. ++..++|.|||+    ||++ |+++.|+++++++.+..        .+++.|+.+|+
T Consensus         5 ~~~~v~~l~~~~~~~~~---~~-~~~~vlv~f~a~----wC~~-C~~~~p~~~~~~~~~~~--------~~~~~~~~vd~   67 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIV---MD-PKKDVLIEFYAP----WCGH-CKQLEPIYTSLGKKYKG--------QKDLVIAKMDA   67 (133)
T ss_dssp             SSCSSEECCTTTCCCCC---TC-TTSEEEEEECCT----TCSH-HHHHHHHHHHHHHHHTT--------SSSEEEEEECT
T ss_pred             CCCceEEEcCCCHHHHh---cc-CCCcEEEEEECC----CChh-HHHHHHHHHHHHHHhcC--------CCCEEEEEecC
Confidence            34679999999999987   22 355799999999    8999 89999999999998732        24799999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccc-cccCHHHHHHHHHhhcCCCC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD-FARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~-~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++++.+.++|+++++||+++|+++ +...    . ..+. +..+.++|.+||++.++...
T Consensus        68 ~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~----~-~~~~gg~~~~~~l~~~l~~~~~~~~  121 (133)
T 2dj3_A           68 TANDITNDQYKVEGFPTIYFAPSG-DKKN----P-IKFEGGNRDLEHLSKFIDEHATKRS  121 (133)
T ss_dssp             TTSCCCCSSCCCSSSSEEEEECTT-CTTS----C-EECCSSCCSTTHHHHHHHHHSSSCS
T ss_pred             CcCHHHHhhcCCCcCCEEEEEeCC-Cccc----c-eEecCCCcCHHHHHHHHHHhccccc
Confidence            999999999999999999999875 2221    1 1234 34788999999999988654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.59  E-value=6e-15  Score=126.29  Aligned_cols=107  Identities=14%  Similarity=0.194  Sum_probs=90.0

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..++++++++|++.+   +.  +..++|+|||+    ||++ |+.+.|+|+++|+.+.          +++.|+++|+++
T Consensus        47 ~~~~~l~~~~f~~~~---~~--~~~vlv~F~a~----wC~~-C~~~~p~l~~la~~~~----------~~v~~~~vd~~~  106 (155)
T 2ppt_A           47 GKVAGIDPAILARAE---RD--DLPLLVDFWAP----WCGP-CRQMAPQFQAAAATLA----------GQVRLAKIDTQA  106 (155)
T ss_dssp             SSEEECCHHHHHHHT---TC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHHT----------TTCEEEEEETTT
T ss_pred             CCCccCCHHHHHHHH---hC--CCcEEEEEECC----CCHH-HHHHHHHHHHHHHHcc----------CCEEEEEEeCCc
Confidence            358999999999986   22  34699999999    8999 8999999999999872          359999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++.++|+|+++|++++|+.  |+..      .++.|..+.+++.+||++.++.
T Consensus       107 ~~~l~~~~~i~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          107 HPAVAGRHRIQGIPAFILFHK--GREL------ARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             STHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHHC-
T ss_pred             cHHHHHHcCCCcCCEEEEEeC--CeEE------EEecCCCCHHHHHHHHHHHhcc
Confidence            999999999999999999964  3432      3455667899999999998763

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.59  E-value=2.8e-15  Score=123.24  Aligned_cols=107  Identities=17%  Similarity=0.218  Sum_probs=84.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCCh--------------hhcccchHHHHHHHHHhhhcCCCCCC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPE--------------LHLQELRNEFSLVASSFIANNVDNPS  111 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~--------------~cC~~l~pefe~vA~s~~~~~p~~~~  111 (347)
                      ++|+++|+++|++.+  .+.  +..++|.|||+    ||+              + |+++.|.++++++.+         
T Consensus         3 ~~v~~l~~~~f~~~~--~~~--~k~vlv~F~a~----wC~~c~~l~~~~~~~~~~-C~~~~p~~~~l~~~~---------   64 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDV--LKA--DGAILVDFWAE----WCGPIEESDDRRYDLVGP-CKMIAPILDEIADEY---------   64 (123)
T ss_dssp             CSCEECCSTTHHHHT--TSC--SSEEEEEEECS----SCSCBSSSTTSCCSCCCC-CCTTHHHHTTC-------------
T ss_pred             CccEecChhhHHHHH--HhC--CCeEEEEEECC----CCccccccccccccCCCC-cHHHHHHHHHHHHHh---------
Confidence            579999999999765  232  44799999999    899              9 899999999998876         


Q ss_pred             CCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          112 SRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       112 ~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                       ++++.|+++|++++++++++|+++++|++++|+.  |+..      .++.|..+.+++.+||++.++
T Consensus        65 -~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           65 -QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN--GEVA------ATKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             ----CEEEEEETTSCTTTGGGGTCCBSSEEEEEES--SSEE------EEEESCCCHHHHHHHHTTTCC
T ss_pred             -cCCeEEEEEECCCCHHHHHHcCCCccCEEEEEEC--CEEE------EEEeCCCCHHHHHHHHHHHhC
Confidence             2369999999999999999999999999999954  4432      345567789999999987654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.59  E-value=8.4e-15  Score=118.43  Aligned_cols=114  Identities=13%  Similarity=0.155  Sum_probs=90.0

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|+++|+++|++.+  .+  ++..++|.|||+    ||++ |+++.|+++++|+.+....     ..+++.|+++|++
T Consensus         6 ~~~v~~l~~~~f~~~v--~~--~~~~vlv~f~a~----wC~~-C~~~~p~~~~~~~~~~~~~-----~~~~v~~~~vd~~   71 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIV--LD--DTKDVLIEFYAP----WCGH-CKALAPKYEELGALYAKSE-----FKDRVVIAKVDAT   71 (121)
T ss_dssp             SCSSEECCTTTTTTSS--SC--TTSCEEEEEECS----SCTT-HHHHHHHHHHHHHHHTTSS-----CTTSSEEEEEETT
T ss_pred             CCCeEEecccCHHHHh--hc--CCCCEEEEEECC----CCHh-HHHhhHHHHHHHHHHhhcc-----cCCceEEEEEECc
Confidence            4679999999999886  12  345799999999    8999 8999999999999884210     1237999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +++ +.+  +++++|++++|+++ ++.     ....+.+.++.+++.+||++.++..
T Consensus        72 ~~~-~~~--~v~~~Pt~~~~~~~-~~~-----~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           72 AND-VPD--EIQGFPTIKLYPAG-AKG-----QPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             TSC-CSS--CCSSSSEEEEECSS-CTT-----SCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             ccc-ccc--ccCcCCeEEEEeCc-CCC-----CceEecCCCCHHHHHHHHHhccCcC
Confidence            876 444  99999999999875 231     0234566788999999999988754

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.59  E-value=6.9e-15  Score=119.26  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=88.2

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|+++|+++|++.+  .++  +..++|.|||+    ||++ |+++.|+++++++.+.          +++.|+.+|++
T Consensus         2 ~~~v~~l~~~~f~~~~--~~~--~~~~lv~f~a~----~C~~-C~~~~~~~~~~~~~~~----------~~~~~~~vd~~   62 (122)
T 3aps_A            2 PQASIDLTPQTFNEKV--LQG--KTHWVVDFYAP----WCGP-CQNFAPEFELLARMIK----------GKVRAGKVDCQ   62 (122)
T ss_dssp             CCCSEECCHHHHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHHT----------TTCEEEEEETT
T ss_pred             CcchhcCCHHHHHHHH--hcC--CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHhc----------CCeEEEEEeCc
Confidence            3579999999997654  233  34799999999    8999 8999999999999872          36999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCcccccccccc----ccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF----ARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~----~~~a~~l~~fi~~~t~  179 (347)
                      ++++++++++++++|++++|.++ +..       ..+.+    ..+.+++.+||++.++
T Consensus        63 ~~~~~~~~~~v~~~Pt~~~~~~~-~~~-------~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           63 AYPQTCQKAGIKAYPSVKLYQYE-RAK-------KSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEEEE-GGG-------TEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCCccceEEEEeCC-Ccc-------ceeeccccCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999864 221       22233    3689999999998765

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.58  E-value=4.9e-15  Score=116.68  Aligned_cols=103  Identities=15%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |+++|+++|++.+   +.  +..++|.||++    ||++ |+++.|+++++++.+          ++++.|+.+|+++++
T Consensus         2 v~~l~~~~~~~~~---~~--~~~~~v~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~v~~~~v~~~~~~   61 (105)
T 1nsw_A            2 TMTLTDANFQQAI---QG--DGPVLVDFWAA----WCGP-CRMMAPVLEEFAEAH----------ADKVTVAKLNVDENP   61 (105)
T ss_dssp             CEEECTTTHHHHH---SS--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHS----------TTTCEEEEEETTTCH
T ss_pred             ceeccHHhHHHHH---hC--CCcEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------cCCcEEEEEECcCCH
Confidence            7899999999876   33  23689999998    8999 899999999999876          235999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++.++++++++|++++|+.  |+..      ..+.|..+.+++.+++++.+
T Consensus        62 ~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           62 ETTSQFGIMSIPTLILFKG--GRPV------KQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             HHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHTTTTT
T ss_pred             HHHHHcCCccccEEEEEeC--CeEE------EEEecCCCHHHHHHHHHHHh
Confidence            9999999999999999954  3332      34456678899999987654

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.58  E-value=6.9e-15  Score=115.85  Aligned_cols=106  Identities=18%  Similarity=0.131  Sum_probs=87.6

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      .|+++|+++|++.+   +.  +..++|.|+++    ||++ |+++.|+++++++.+          ++++.|+.+|++++
T Consensus         2 ~v~~l~~~~~~~~~---~~--~~~~lv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~v~~~~~   61 (109)
T 2yzu_A            2 KPIEVTDQNFDETL---GQ--HPLVLVDFWAE----WCAP-CRMIAPILEEIAKEY----------EGKLLVAKLDVDEN   61 (109)
T ss_dssp             CCEECCTTTHHHHH---HH--CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------BTTBEEEEEETTTC
T ss_pred             cceEccHhHHHHHh---cC--CCeEEEEEECC----CCHH-HHHhhHHHHHHHHHh----------hCceEEEEEECCCC
Confidence            58999999999876   32  34789999998    8999 899999999999876          23699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      +++.++++++++|++++|+.  |+..      ..+.+..+.+++.+|+++.++.
T Consensus        62 ~~~~~~~~v~~~Pt~~~~~~--g~~~------~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           62 PKTAMRYRVMSIPTVILFKD--GQPV------EVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             HHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHTTC--
T ss_pred             HhHHHhCCCCcCCEEEEEeC--CcEe------eeEeCCCCHHHHHHHHHHHhhh
Confidence            99999999999999999953  3332      3445667899999999987764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.58  E-value=1.2e-14  Score=114.81  Aligned_cols=105  Identities=16%  Similarity=0.098  Sum_probs=87.0

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +|+++|+++|++.+  .+.  +..++|.|+|+    ||++ |+++.|.++++++.+          ++++.|+.+|.+++
T Consensus         2 ~v~~l~~~~~~~~~--~~~--~~~~lv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~v~~~~~   62 (107)
T 1dby_A            2 EAGAVNDDTFKNVV--LES--SVPVLVDFWAP----WCGP-CRIIAPVVDEIAGEY----------KDKLKCVKLNTDES   62 (107)
T ss_dssp             CCEEECHHHHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEETTTC
T ss_pred             ccEeccHHHHHHHH--hcC--CCcEEEEEECC----CCHh-HHHHHHHHHHHHHHh----------CCceEEEEEECCCC
Confidence            47899999999986  222  44799999998    8999 899999999999876          23599999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++.++++++++|++++|+.  |+..      ..+.|..+.+++.++|++.+
T Consensus        63 ~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           63 PNVASEYGIRSIPTIMVFKG--GKKC------ETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             HHHHHHHTCCSSCEEEEESS--SSEE------EEEESCCCHHHHHHHHHHHC
T ss_pred             HHHHHHCCCCcCCEEEEEeC--CEEE------EEEeCCCCHHHHHHHHHHHh
Confidence            99999999999999999964  3432      34456678899999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.58  E-value=7.6e-15  Score=136.78  Aligned_cols=108  Identities=13%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .+.|+++|++||++.+   +.+++..++|.|||+    ||++ |+.+.|+++++++.+          .+++.|+++|++
T Consensus         6 ~~~v~~~~~~~f~~~~---~~~~~~~v~v~f~a~----wC~~-C~~~~p~~~~~~~~~----------~~~~~~~~vd~~   67 (287)
T 3qou_A            6 VENIVNINESNLQQVL---EQSMTTPVLFYFWSE----RSQH-CLQLTPILESLAAQY----------NGQFILAKLDCD   67 (287)
T ss_dssp             CTTEEECCTTTHHHHH---TTTTTSCEEEEEECT----TCTT-TTTTHHHHHHHHHHH----------TSSSEEEEEETT
T ss_pred             CCccEECCHHHHHHHH---HhcCCCeEEEEEECC----CChH-HHHHHHHHHHHHHHc----------CCCeEEEEEeCc
Confidence            4579999999999987   444566899999999    8999 899999999999987          236999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++.++|+|+++||+++|+.  |+..      ..+.+..+.+.+.+|+.+..
T Consensus        68 ~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           68 AEQMIAAQFGLRAIPTVYLFQN--GQPV------DGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             TCHHHHHTTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHS
T ss_pred             cCHHHHHHcCCCCCCeEEEEEC--CEEE------EEeeCCCCHHHHHHHHHHHc
Confidence            9999999999999999999974  3332      34556788999999998875

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.58  E-value=1.2e-14  Score=116.14  Aligned_cols=106  Identities=10%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .+.|+++|+++|++.+   ...++..++|.|||+    ||++ |+++.|+++++++.+           .++.|+.+|++
T Consensus         4 ~~~v~~l~~~~~~~~~---~~~~~~~vlv~f~a~----wC~~-C~~~~~~l~~~~~~~-----------~~v~~~~vd~~   64 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIV---KAAGDKPVVLDMFTQ----WCGP-SKAMAPKYEKLAEEY-----------LDVIFLKLDCN   64 (111)
T ss_dssp             TTSEEEECTTTHHHHH---TTCTTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEECS
T ss_pred             cCccEEechHHHHHHH---HhcCCCEEEEEEECC----cCHh-HHHHCHHHHHHHHHC-----------CCeEEEEEecC
Confidence            4569999999999998   333455799999998    8999 899999999999875           14899999999


Q ss_pred             -CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 -ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 -~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                       +++++.++|+++++|++++++.|  +..      ..+.|. +.+++.++|++..
T Consensus        65 ~~~~~~~~~~~v~~~Pt~~~~~~G--~~~------~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           65 QENKTLAKELGIRVVPTFKILKEN--SVV------GEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             STTHHHHHHHCCSBSSEEEEESSS--SEE------EEEESS-CHHHHHHHHHHHH
T ss_pred             cchHHHHHHcCCCeeeEEEEEeCC--cEE------EEEcCC-CHHHHHHHHHHhh
Confidence             68899999999999999999753  332      233343 4888999998754

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.57  E-value=9.2e-15  Score=118.75  Aligned_cols=109  Identities=7%  Similarity=0.091  Sum_probs=89.9

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +++.++.+|+++|++.+  .+.  +..++|+|+++    ||++ |+.+.|.++++++.+          .+++.|+.+|+
T Consensus        11 ~~~~~~~~~~~~f~~~v--~~~--~k~vlv~f~a~----~C~~-C~~~~~~l~~~~~~~----------~~~v~~~~vd~   71 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRV--VNS--ETPVVVDFHAQ----WCGP-CKILGPRLEKMVAKQ----------HGKVVMAKVDI   71 (119)
T ss_dssp             CCSEEECCSHHHHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTSSEEEEEET
T ss_pred             CceEEEecChhhHHHHH--HcC--CCcEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------cCCeEEEEEeC
Confidence            45679999999999976  232  34699999998    8999 899999999999876          23699999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++++++|+++++|++++|+.  |+..      ..+.+..+.+++.+||++.+|
T Consensus        72 d~~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           72 DDHTDLAIEYEVSAVPTVLAMKN--GDVV------DKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             TTTHHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHcCCCcccEEEEEeC--CcEE------EEEcCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999953  4432      344566789999999998764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.57  E-value=4.7e-15  Score=125.77  Aligned_cols=108  Identities=10%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceE--EEEEEcc
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLF--FCYLEFK  124 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~--F~~vD~~  124 (347)
                      ++.++|+++|++.+   +..+  .++|+|++.|+  ||++ |+.+.|.++++|++| .          ++.  |+++|+|
T Consensus        18 ~~~~l~~~~f~~~i---~~~~--~~vv~f~~~~~--~C~~-C~~l~P~l~~la~~~-~----------~v~~~~~~Vd~d   78 (142)
T 2es7_A           18 GWQPVEASTVDDWI---KRVG--DGVILLSSDPR--RTPE-VSDNPVMIAELLREF-P----------QFDWQVAVADLE   78 (142)
T ss_dssp             TCEECCCC-----------CC--SEEEEECCCSC--C-----CCHHHHHHHHHHTC-T----------TSCCEEEEECHH
T ss_pred             cCcccccccHHHHH---HhCC--CEEEEEECCCC--CCcc-HHHHHHHHHHHHHHh-c----------ccceeEEEEECC
Confidence            89999999999998   3322  47888988743  5999 899999999999876 2          467  9999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +++++.++|+|+++||+++|+.  |+..      .++.|..+.+++.+||++.++..
T Consensus        79 ~~~~la~~~~V~~iPT~~~fk~--G~~v------~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           79 QSEAIGDRFNVRRFPATLVFTD--GKLR------GALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             HHHHHHHTTTCCSSSEEEEESC--C----------CEESCCCHHHHHHHHHHHHC--
T ss_pred             CCHHHHHhcCCCcCCeEEEEeC--CEEE------EEEeCCCCHHHHHHHHHHHhccc
Confidence            9999999999999999999964  4433      44566778999999999988754

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.2e-14  Score=137.69  Aligned_cols=120  Identities=20%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .++.|++||++||++.+   .. .+..++|.|||+    ||++ |+++.|+|+++|+.+.          +++.|+.+|+
T Consensus        15 ~~~~vv~lt~~~f~~~i---~~-~~~~vlV~F~A~----wC~~-C~~~~p~~~~la~~~~----------~~~~~~~v~~   75 (298)
T 3ed3_A           15 SDPHISELTPKSFDKAI---HN-TNYTSLVEFYAP----WCGH-CKKLSSTFRKAAKRLD----------GVVQVAAVNC   75 (298)
T ss_dssp             SCTTCEECCHHHHHHHH---TS-SSSCEEEEEECT----TCHH-HHHHHHHHHHHHHHTT----------TTSEEEEEET
T ss_pred             CCCCeEEeCHHHHHHHH---Hh-CCCeEEEEEECC----CCHH-HHHHHHHHHHHHHHcc----------CCcEEEEEEc
Confidence            45679999999999998   22 245799999999    8999 8999999999999872          3588888988


Q ss_pred             c--CCcchHhHcCCCCCceEEEEcCCCCCCC-C--------ccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          124 K--ESQSSFALFAVNSLPHIRLVGPDAKSLK-D--------DSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       124 ~--~~~~lf~~~~I~svP~l~~fpp~~g~~~-~--------~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +  ++++++++|+|+++|++++|.++..... .        .......|.|++++++|.+|+.++++..+
T Consensus        76 d~~~~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v  145 (298)
T 3ed3_A           76 DLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYV  145 (298)
T ss_dssp             TSTTTHHHHHHTTCCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCE
T ss_pred             cCccCHHHHHhCCCCccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhccccc
Confidence            8  5789999999999999999998531000 0        01124567889999999999999988655

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.57  E-value=8.4e-15  Score=118.26  Aligned_cols=109  Identities=13%  Similarity=0.059  Sum_probs=88.5

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .+++++++|+++|++.+  .+.  +..++|.|+++    ||++ |+.+.|+++++++.+          ++++.|+.+|+
T Consensus        10 ~~~~v~~l~~~~~~~~~--~~~--~~~~lv~f~~~----~C~~-C~~~~~~~~~~~~~~----------~~~~~~~~v~~   70 (121)
T 2i1u_A           10 EKSATIKVTDASFATDV--LSS--NKPVLVDFWAT----WCGP-CKMVAPVLEEIATER----------ATDLTVAKLDV   70 (121)
T ss_dssp             --CCSEECCTTTHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEET
T ss_pred             hcccceecCHHHHHHHH--HhC--CCcEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------cCCeEEEEEEC
Confidence            34679999999999876  232  44689999998    8999 899999999999886          23699999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++++++++++++|++++|+.  |+..      ..+.|..+.+++.+||++.+.
T Consensus        71 ~~~~~~~~~~~i~~~Pt~~~~~~--g~~~------~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           71 DTNPETARNFQVVSIPTLILFKD--GQPV------KRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHTCSCCC
T ss_pred             CCCHHHHHhcCCCcCCEEEEEEC--CEEE------EEecCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999974  3332      344566788999999877653

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.56  E-value=1.2e-14  Score=121.60  Aligned_cols=108  Identities=9%  Similarity=0.119  Sum_probs=89.8

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .+.|+++|+++|++.+  .+.  +..++|+|||+    ||++ |+++.|+++++++.+.          +++.|+.+|++
T Consensus         5 ~~~v~~l~~~~f~~~~--~~~--~~~vlv~F~a~----wC~~-C~~~~~~l~~l~~~~~----------~~v~~~~vd~~   65 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQV--EDS--KKPVVVMFYSP----ACPY-CKAMEPYFEEYAKEYG----------SSAVFGRINIA   65 (140)
T ss_dssp             TTTEEEECHHHHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHHT----------TTSEEEEEETT
T ss_pred             CcceEEcchHhHHHHH--HhC--CCcEEEEEECC----CChh-HHHHHHHHHHHHHHhC----------CceEEEEEECC
Confidence            3579999999999665  233  44799999999    8999 8999999999999872          36999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++++++|+++++|++++|+.  |+.      ...+.+..+.+++.+||++.++
T Consensus        66 ~~~~l~~~~~v~~~Pt~~~~~~--G~~------~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           66 TNPWTAEKYGVQGTPTFKFFCH--GRP------VWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             TCHHHHHHHTCCEESEEEEEET--TEE------EEEEESSCCHHHHHHHHHHHHH
T ss_pred             cCHhHHHHCCCCcCCEEEEEeC--CcE------EEEEcCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999964  333      2445667789999999987764

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.56  E-value=1.5e-14  Score=115.36  Aligned_cols=107  Identities=14%  Similarity=0.147  Sum_probs=88.0

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|+++|+++|++.+  .+.  +..++|.|||+    ||++ |+++.|+++++++.+          ++++.|+.+|+++
T Consensus         5 ~~v~~l~~~~~~~~~--~~~--~~~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~v~~~~   65 (112)
T 1t00_A            5 GTLKHVTDDSFEQDV--LKN--DKPVLVDFWAA----WCGP-CRQIAPSLEAIAAEY----------GDKIEIVKLNIDE   65 (112)
T ss_dssp             CCCEEECTTTHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEETTT
T ss_pred             ceEEecchhhHHHHH--hhC--CCeEEEEEECC----CCHh-HHhcCHHHHHHHHHh----------cCCeEEEEEEcCC
Confidence            458999999998876  232  44789999998    8999 899999999999886          2359999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++.++|+++++|++++|+.  |+..      ..+.|..+.+++.+||++.+.
T Consensus        66 ~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           66 NPGTAAKYGVMSIPTLNVYQG--GEVA------KTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             CHHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHTHHHHC
T ss_pred             CHHHHHhCCCCcccEEEEEeC--CEEE------EEEeCCCCHHHHHHHHHHHhh
Confidence            999999999999999999964  3332      344566788999999987653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.56  E-value=6.1e-15  Score=119.53  Aligned_cols=105  Identities=10%  Similarity=0.078  Sum_probs=85.9

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +......|+++|++.+   +..++..++|.|||+    ||++ |+++.|+++++++.+          . ++.|+++|++
T Consensus        11 ~~~~~~~t~~~f~~~l---~~~~~k~vlv~F~a~----wC~~-C~~~~p~l~~l~~~~----------~-~v~~~~vd~d   71 (116)
T 3qfa_C           11 GSVKQIESKTAFQEAL---DAAGDKLVVVDFSAT----WCGP-SKMIKPFFHSLSEKY----------S-NVIFLEVDVD   71 (116)
T ss_dssp             -CCBCCCCHHHHHHHH---HHHTTSCEEEEEECT----TCHH-HHHHHHHHHHHHTTC----------T-TSEEEEEETT
T ss_pred             CcccCCCCHHHHHHHH---HhcCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHC----------C-CCEEEEEECC
Confidence            3457788999999998   322355799999999    8999 899999999998765          1 2999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++++.++|+++++|++++|+.  |+..      ..+.+. +.+++.++|++.
T Consensus        72 ~~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           72 DCQDVASECEVKSMPTFQFFKK--GQKV------GEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             TTHHHHHHTTCCSSSEEEEESS--SSEE------EEEESC-CHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCccccEEEEEeC--CeEE------EEEcCC-CHHHHHHHHHHh
Confidence            9999999999999999999964  3432      334555 899999999875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.56  E-value=1.3e-14  Score=115.15  Aligned_cols=105  Identities=13%  Similarity=0.133  Sum_probs=83.5

Q ss_pred             CeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +++++ |+++|++.+   ...++..++|.|||+    ||++ |+++.|.++++|+.+           +++.|+++|+++
T Consensus         2 ~v~~i~~~~~~~~~~---~~~~~~~v~v~f~a~----wC~~-C~~~~~~~~~~~~~~-----------~~~~~~~vd~~~   62 (107)
T 1gh2_A            2 GVKPVGSDPDFQPEL---SGAGSRLAVVKFTMR----GCGP-CLRIAPAFSSMSNKY-----------PQAVFLEVDVHQ   62 (107)
T ss_dssp             CEEEECSGGGHHHHH---HHTTTSCEEEEEECS----SCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEETTT
T ss_pred             ceEEecCHHHHHHHH---HhCCCCEEEEEEECC----CChh-hHHHHHHHHHHHHHC-----------CCcEEEEEECcc
Confidence            46777 568999987   222345799999999    8999 899999999999876           258999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++.++|+++++|++++|+.  |+..      ..+.| ...+++.+||++.+|
T Consensus        63 ~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G-~~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           63 CQGTAATNNISATPTFQFFRN--KVRI------DQYQG-ADAVGLEEKIKQHLE  107 (107)
T ss_dssp             SHHHHHHTTCCSSSEEEEEET--TEEE------EEEES-SCHHHHHHHHHHHHC
T ss_pred             CHHHHHhcCCCcccEEEEEEC--CeEE------EEEeC-CCHHHHHHHHHHhcC
Confidence            999999999999999999964  3332      23344 445669999988765

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.55  E-value=2.1e-14  Score=120.89  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=91.2

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.++++++++|++.+   ..  +..++|.|||+    ||++ |+++.|+++++++.+          .+++.|+.+|.++
T Consensus        38 ~~v~~l~~~~~~~~~---~~--~k~vlv~F~a~----wC~~-C~~~~p~l~~~~~~~----------~~~~~~~~vd~~~   97 (148)
T 3p2a_A           38 GEVINATAETLDKLL---QD--DLPMVIDFWAP----WCGP-CRSFAPIFAETAAER----------AGKVRFVKVNTEA   97 (148)
T ss_dssp             CCCEECCTTTHHHHT---TC--SSCEEEEEECS----SCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEETTT
T ss_pred             CCceecCHHHHHHHH---hc--CCcEEEEEECC----CCHH-HHHHHHHHHHHHHHc----------CCceEEEEEECcC
Confidence            469999999999987   33  34799999999    8999 899999999999886          2369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++.++|+++++|++++|+.  |+..      ..+.|..+.+++.+||++.++.
T Consensus        98 ~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A           98 EPALSTRFRIRSIPTIMLYRN--GKMI------DMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             CHHHHHHTTCCSSSEEEEEET--TEEE------EEESSCCCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHCCCCccCEEEEEEC--CeEE------EEEeCCCCHHHHHHHHHHHhcc
Confidence            999999999999999999974  3332      4556778899999999988764

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.55  E-value=1.7e-14  Score=112.37  Aligned_cols=103  Identities=19%  Similarity=0.097  Sum_probs=86.4

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |+++|+++|++.+   +.  +..++|.|+++    ||++ |+.+.|.++++++.+          .+ +.|+.+|+++++
T Consensus         1 V~~l~~~~~~~~~---~~--~~~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~----------~~-~~~~~v~~~~~~   59 (104)
T 2e0q_A            1 VIHLDSKNFDSFL---AS--HEIAVVDFWAE----WCAP-CLILAPIIEELAEDY----------PQ-VGFGKLNSDENP   59 (104)
T ss_dssp             CEECCTTTHHHHH---HH--SSEEEEEEECT----TCHH-HHHHHHHHHHHHHHC----------TT-SEEEEEETTTCH
T ss_pred             CeecCHHHHHHHH---hc--CCcEEEEEECC----CChh-HHHHhHHHHHHHHHc----------CC-ceEEEEECCCCH
Confidence            6899999999997   22  34799999998    8999 899999999999876          23 999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++.++++++++|++++|+.  |+..      ..+.|..+.+++.+|+++.++
T Consensus        60 ~~~~~~~v~~~Pt~~~~~~--g~~~------~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           60 DIAARYGVMSLPTVIFFKD--GEPV------DEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             HHHHHTTCCSSCEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHhCCccccCEEEEEEC--CeEh------hhccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999954  3332      344566789999999998765

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.5e-14  Score=115.42  Aligned_cols=107  Identities=15%  Similarity=0.251  Sum_probs=83.3

Q ss_pred             CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +|+++++ ++|++.+.  +..++..++|.|||+    ||++ |+++.|.++++++.+..         +++.|+.+|+++
T Consensus         1 ~v~~i~~~~~~~~~~~--~~~~~~~~~v~f~a~----wC~~-C~~~~~~~~~~~~~~~~---------~~~~~~~vd~~~   64 (112)
T 3d6i_A            1 PVIEINDQEQFTYLTT--TAAGDKLIVLYFHTS----WAEP-CKALKQVFEAISNEPSN---------SNVSFLSIDADE   64 (112)
T ss_dssp             CEEEECCHHHHHHHHT--TTTTTCCEEEEEECC----C--C-HHHHHHHHHHHHHCGGG---------TTSEEEEEETTT
T ss_pred             CccccCCHHHHHHHHh--cccCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHhcCC---------CCEEEEEEeccc
Confidence            4789998 99999982  213456799999999    8999 89999999999987621         259999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++++.++++++++|++++|+.  |+..      ..+.|. ..+++.++|++.+
T Consensus        65 ~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           65 NSEISELFEISAVPYFIIIHK--GTIL------KELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             CHHHHHHTTCCSSSEEEEEET--TEEE------EEECSC-CHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCcccEEEEEEC--CEEE------EEecCC-CHHHHHHHHHHHH
Confidence            999999999999999999964  3432      333443 4566999988764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-15  Score=127.22  Aligned_cols=87  Identities=15%  Similarity=0.150  Sum_probs=75.9

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +++.|+++|+++|++.+   ...++..++|.|||+    ||++ |+++.|+++++|+.+.         +.++.|+++|+
T Consensus         5 ~~~~v~~l~~~~f~~~~---~~~~~~~vlv~f~a~----wC~~-C~~~~p~~~~l~~~~~---------~~~v~~~~vd~   67 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEEL---ERDKRVTWIVEFFAN----WSND-CQSFAPIYADLSLKYN---------CTGLNFGKVDV   67 (137)
T ss_dssp             CCSCCEECCTTHHHHHH---HHSTTSCEEEEECCT----TCST-TTTTHHHHHHHHHHHC---------SSSCEEEECCT
T ss_pred             CCceEEEccHhhHHHHH---hcCCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHhC---------CCCeEEEEEeC
Confidence            45679999999999998   344555799999999    8999 8999999999999872         23699999999


Q ss_pred             cCCcchHhHcCCC------CCceEEEEcCC
Q 048343          124 KESQSSFALFAVN------SLPHIRLVGPD  147 (347)
Q Consensus       124 ~~~~~lf~~~~I~------svP~l~~fpp~  147 (347)
                      +++++++++|+++      ++||+++|+.|
T Consensus        68 ~~~~~~~~~~~v~~~~~~~~~Pt~~~~~~G   97 (137)
T 2dj0_A           68 GRYTDVSTRYKVSTSPLTKQLPTLILFQGG   97 (137)
T ss_dssp             TTCHHHHHHTTCCCCSSSSCSSEEEEESSS
T ss_pred             ccCHHHHHHccCcccCCcCCCCEEEEEECC
Confidence            9999999999999      99999999753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.55  E-value=2.6e-14  Score=112.10  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |.++|+++|++.+  .++  +..++|.|+++    ||++ |+.+.|+++++++.+          ++++.|+.+|.++++
T Consensus         2 v~~~~~~~~~~~~--~~~--~~~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~   62 (105)
T 1fb6_A            2 VQDVNDSSWKEFV--LES--EVPVMVDFWAP----WCGP-CKLIAPVIDELAKEY----------SGKIAVYKLNTDEAP   62 (105)
T ss_dssp             CEECCTTTHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEETTTCH
T ss_pred             ceechhhhHHHHH--hcC--CCcEEEEEECC----CChH-HHHHHHHHHHHHHHh----------cCceEEEEEcCcchH
Confidence            7889999999976  232  44689999998    8999 899999999999876          235999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++++++++++|++++|+.  |+..      ..+.|..+.+++.++|++.
T Consensus        63 ~~~~~~~v~~~Pt~~~~~~--g~~~------~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           63 GIATQYNIRSIPTVLFFKN--GERK------ESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             HHHHHTTCCSSSEEEEEET--TEEE------EEEEECCCHHHHHHHHHHH
T ss_pred             HHHHhCCCCcccEEEEEeC--CeEE------EEEecCCCHHHHHHHHHhh
Confidence            9999999999999999964  3332      3345667889999999875

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.54  E-value=2.9e-14  Score=112.02  Aligned_cols=103  Identities=12%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             eEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |+++++ ++|++.+   +..++..++|.|+++    ||++ |+++.|.++++++.+.          +++.|+.+|.+++
T Consensus         2 v~~l~~~~~~~~~l---~~~~~~~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~~----------~~~~~~~v~~~~~   63 (106)
T 1xwb_A            2 VYQVKDKADLDGQL---TKASGKLVVLDFFAT----WCGP-CKMISPKLVELSTQFA----------DNVVVLKVDVDEC   63 (106)
T ss_dssp             EEECCSHHHHHHHH---HHHTTSEEEEEEECT----TCHH-HHHHHHHHHHHHHHTT----------TTEEEEEEETTTC
T ss_pred             ceecCCHHHHHHHH---HhcCCCEEEEEEECC----cCHH-HHHhhHHHHHHHHHhC----------CCeEEEEEeccch
Confidence            678999 9999988   322345799999998    8999 8999999999998762          4699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++.++++++++|++++|+.  |+..      ..+.| .+.+++.+||++.
T Consensus        64 ~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           64 EDIAMEYNISSMPTFVFLKN--GVKV------EEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             HHHHHHTTCCSSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcccEEEEEcC--CcEE------EEEcC-CCHHHHHHHHHHh
Confidence            99999999999999999974  3332      33344 5788899999875

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.53  E-value=1.6e-14  Score=114.94  Aligned_cols=107  Identities=12%  Similarity=0.158  Sum_probs=85.8

Q ss_pred             CCeEEc-ChhhHHHHhcccCCCC--CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           46 AGVIHL-NDQLVSRFLTSTKTPR--PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        46 ~~VI~L-~~~nf~~lv~~~~~~R--~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      +.|+++ ++++|++.+.   ..+  +..++|.||++    ||++ |+.+.|.++++++.+          .+++.|+.+|
T Consensus         2 ~~v~~i~~~~~~~~~l~---~~~~~~~~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~vd   63 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLA---KGKEEHKPIVVDFTAT----WCGP-CKMIAPLFETLSNDY----------AGKVIFLKVD   63 (112)
T ss_dssp             CSEEEECSHHHHHHHHH---HHHHHTCCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTSEEEEEE
T ss_pred             CcEEEecCHHHHHHHHH---hhcccCCeEEEEEECC----CCHH-HHHHHHHHHHHHHHc----------CCCeEEEEEE
Confidence            358999 5689999882   211  34689999998    8999 899999999999876          2369999999


Q ss_pred             ccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          123 FKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       123 ~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      .++++++.++|+++++|++++|+.  |+..      ..+.|. +.+++.+||++.+.
T Consensus        64 ~~~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           64 VDAVAAVAEAAGITAMPTFHVYKD--GVKA------DDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             TTTTHHHHHHHTCCBSSEEEEEET--TEEE------EEEESC-CHHHHHHHHHHHHC
T ss_pred             CCchHHHHHHcCCCcccEEEEEEC--CeEE------EEEcCC-CHHHHHHHHHHHhc
Confidence            999999999999999999999974  3332      334455 78999999988653

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.53  E-value=2e-14  Score=119.93  Aligned_cols=106  Identities=14%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.++++|+++|++.+  .++  +. ++|.||++    ||++ |+.+.|+++++++.+          .+++.|+.+|+++
T Consensus        33 ~~v~~l~~~~~~~~~--~~~--~~-vvv~f~~~----~C~~-C~~~~~~l~~l~~~~----------~~~v~~~~vd~~~   92 (140)
T 1v98_A           33 PWVVEADEKGFAQEV--AGA--PL-TLVDFFAP----WCGP-CRLVSPILEELARDH----------AGRLKVVKVNVDE   92 (140)
T ss_dssp             ------------------CC--CE-EEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTEEEEEEETTT
T ss_pred             CccccCCHHHHHHHH--HcC--CC-EEEEEECC----CCHH-HHHHHHHHHHHHHHc----------cCceEEEEEECCC
Confidence            459999999999987  232  33 89999998    8999 899999999999876          2369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++.++|+++++|++++|+.  |+..      ..+.|..+.+++.+||++.++
T Consensus        93 ~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A           93 HPGLAARYGVRSVPTLVLFRR--GAPV------ATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             CHHHHHHTTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHCCCCccCEEEEEeC--CcEE------EEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999999999964  3432      344566789999999998765

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.53  E-value=1.9e-14  Score=140.30  Aligned_cols=116  Identities=12%  Similarity=0.208  Sum_probs=93.6

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|++||++||++.+   ++  +..++|.|||+    ||++ |+.+.|+|+++|+.+...+|    .++++.|++||+++
T Consensus         5 ~~v~~l~~~~f~~~~---~~--~~~vlV~F~a~----wC~~-C~~~~p~~~~~a~~~~~~~~----~~~~v~~~~Vd~~~   70 (382)
T 2r2j_A            5 SEITSLDTENIDEIL---NN--ADVALVNFYAD----WCRF-SQMLHPIFEEASDVIKEEFP----NENQVVFARVDCDQ   70 (382)
T ss_dssp             ---CBCCTTTHHHHH---HH--CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTTCC-------CCEEEEEEETTT
T ss_pred             CceEECCHHHHHHHH---hc--CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHHHhhcC----CCCceEEEEEECCc
Confidence            459999999999987   32  33799999999    8999 89999999999999854432    13569999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++++++++|+++||+++|+.|  ...     ...|.|.+++++|.+|+.+.++..+
T Consensus        71 ~~~l~~~~~v~~~Pt~~~f~~G--~~~-----~~~~~G~~~~~~l~~~i~~~~~~~v  120 (382)
T 2r2j_A           71 HSDIAQRYRISKYPTLKLFRNG--MMM-----KREYRGQRSVKALADYIRQQKSDPI  120 (382)
T ss_dssp             CHHHHHHTTCCEESEEEEEETT--EEE-----EEECCSCCSHHHHHHHHHHHHSCCC
T ss_pred             cHHHHHhcCCCcCCEEEEEeCC--cEe-----eeeecCcchHHHHHHHHHHhccCCc
Confidence            9999999999999999999853  321     1146788999999999999998655

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.52  E-value=3.5e-14  Score=115.56  Aligned_cols=106  Identities=10%  Similarity=0.159  Sum_probs=85.2

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .+.++++|+++|++.+   ...++..++|.|||+    ||++ |+++.|+++++++.+           .++.|+.+|.+
T Consensus        17 ~~~v~~l~~~~~~~~~---~~~~~~~~vv~f~a~----wC~~-C~~~~~~l~~~~~~~-----------~~~~~~~vd~~   77 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIV---KAAGDKPVVLDMFTQ----WCGP-CKAMAPKYEKLAEEY-----------LDVIFLKLDCN   77 (124)
T ss_dssp             TTSEEEECTTTHHHHH---HHTTTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEECS
T ss_pred             CCceEEecchhHHHHH---HhcCCCEEEEEEECC----cCHh-HHHHhHHHHHHHHHC-----------CCCEEEEEecC
Confidence            4579999999999987   322345799999998    8999 899999999999875           14899999998


Q ss_pred             -CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 -ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 -~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                       +++++.++++++++|++++++.|  +..      ..+.|. ..+++.++|++..
T Consensus        78 ~~~~~~~~~~~v~~~Pt~~~~~~G--~~~------~~~~G~-~~~~l~~~i~~~~  123 (124)
T 1faa_A           78 QENKTLAKELGIRVVPTFKILKEN--SVV------GEVTGA-KYDKLLEAIQAAR  123 (124)
T ss_dssp             STTHHHHHHHCCSSSSEEEEEETT--EEE------EEEESS-CHHHHHHHHHHHT
T ss_pred             cchHHHHHHcCCCeeeEEEEEeCC--cEE------EEEcCC-CHHHHHHHHHHhh
Confidence             68899999999999999999753  332      233443 4889999998754

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.52  E-value=1.6e-14  Score=114.41  Aligned_cols=102  Identities=10%  Similarity=0.072  Sum_probs=70.5

Q ss_pred             eEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +.++ |+++|++.+   +.  +..++|.|||+    ||++ |+.+.|.++++++.+           +++.|+++|++++
T Consensus         2 m~~i~~~~~~~~~~---~~--~~~vlv~f~a~----wC~~-C~~~~p~~~~~~~~~-----------~~~~~~~vd~~~~   60 (105)
T 4euy_A            2 MNTFKTIEELATYI---EE--QQLVLLFIKTE----NCGV-CDVMLRKVNYVLENY-----------NYVEKIEILLQDM   60 (105)
T ss_dssp             --------CCSSST---TC--SSEEEEEEEES----SCHH-HHHHHHHHHHHHHTC-----------TTEEEEEEEECCC
T ss_pred             ccccCCHHHHHHHH---hc--CCCEEEEEeCC----CCcc-hHHHHHHHHHHHHHc-----------CCceEEEEECCCC
Confidence            3445 457888876   33  34799999999    8999 899999999999875           2599999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++.++|+++++|++++|+.  |+..      .++.|..+.+++.+++++..
T Consensus        61 ~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           61 QEIAGRYAVFTGPTVLLFYN--GKEI------LRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             ---------CCCCEEEEEET--TEEE------EEEESSCCHHHHHHHHHTTC
T ss_pred             HHHHHhcCCCCCCEEEEEeC--CeEE------EEEeCCcCHHHHHHHHHHhh
Confidence            99999999999999999974  3332      44456678999999998754

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.52  E-value=3e-14  Score=138.46  Aligned_cols=111  Identities=12%  Similarity=0.117  Sum_probs=91.5

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhh--cccch---HHHHHHHHHhhhcCCCCCCCCCceEEE
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELH--LQELR---NEFSLVASSFIANNVDNPSSRGKLFFC  119 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~c--C~~l~---pefe~vA~s~~~~~p~~~~~~~~v~F~  119 (347)
                      +++|++||++||++.+   +.  +..++|.|||+    ||++|  |++++   |+|+++|+.+.         +.++.|+
T Consensus        12 ~~~v~~lt~~~f~~~i---~~--~~~vlV~FyAp----WC~~~~~~~~l~~~~p~~e~~a~~~~---------~~~v~~~   73 (367)
T 3us3_A           12 VDRVINVNAKNYKNVF---KK--YEVLALLYHEP----PEDDKASQRQFEMEELILELAAQVLE---------DKGVGFG   73 (367)
T ss_dssp             CCCCEECCTTTHHHHH---HH--CSEEEEEEECC----CCSSHHHHHHHHHHHHHHHHHHHHHT---------TTTEEEE
T ss_pred             CCccEECCHHHHHHHH---hh--CCeEEEEEECC----CchhHHHhhhhccccHHHHHHHHHhh---------cCCceEE
Confidence            4579999999999998   32  34799999999    78773  34444   79999999873         2369999


Q ss_pred             EEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          120 YLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       120 ~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +||++++++++++|+|+++||+++|+.|  +.       ..|.|+++++.|.+|+.++++..+
T Consensus        74 ~Vd~~~~~~l~~~~~V~~~PTl~~f~~G--~~-------~~y~G~~~~~~i~~~i~~~~~~~v  127 (367)
T 3us3_A           74 LVDSEKDAAVAKKLGLTEEDSIYVFKED--EV-------IEYDGEFSADTLVEFLLDVLEDPV  127 (367)
T ss_dssp             EEETTTTHHHHHHHTCCSTTEEEEEETT--EE-------EECCSCCSHHHHHHHHHHHHSCSE
T ss_pred             EEeCcccHHHHHHcCCCcCceEEEEECC--cE-------EEeCCCCCHHHHHHHHHHhcCCCc
Confidence            9999999999999999999999999853  22       356788999999999999988654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.52  E-value=3.1e-14  Score=142.23  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=95.3

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      +|++||++||++.+  .+..++..++|.|||+    ||++ |+++.|+|+++|+.+.          +++.|+++|++++
T Consensus         2 ~v~~l~~~~f~~~i--~~~~~~~~~lv~F~a~----wC~~-C~~~~p~~~~~a~~~~----------~~v~~~~vd~~~~   64 (481)
T 3f8u_A            2 DVLELTDDNFESRI--SDTGSAGLMLVEFFAP----WCGH-AKRLAPEYEAAATRLK----------GIVPLAKVDCTAN   64 (481)
T ss_dssp             CCEEECTTTHHHHT--TCCSSSSEEEEEEECT----TCHH-HHHHHHHHHHHHHHTT----------TTCCEEEEETTTC
T ss_pred             ceEEecHHHHHHHH--HhCCCCCeEEEEEECC----CCHH-HHHhHHHHHHHHHHhc----------CceEEEEEECCCC
Confidence            58999999999998  2333446899999999    8999 8999999999999872          3499999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++++++++|+++||+++|+.|  +.      ...|.|.++++++.+|+.+.++..+
T Consensus        65 ~~l~~~~~v~~~Ptl~~~~~g--~~------~~~~~G~~~~~~l~~~~~~~~~~~~  112 (481)
T 3f8u_A           65 TNTCNKYGVSGYPTLKIFRDG--EE------AGAYDGPRTADGIVSHLKKQAGPAS  112 (481)
T ss_dssp             HHHHHHTTCCEESEEEEEETT--EE------EEECCSCSSHHHHHHHHHHHTSCSE
T ss_pred             HHHHHhcCCCCCCEEEEEeCC--ce------eeeecCccCHHHHHHHHHhhcccCc
Confidence            999999999999999999864  22      2567788999999999999988654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.52  E-value=1.4e-14  Score=120.58  Aligned_cols=109  Identities=12%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             CCCCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           44 SEAGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        44 s~~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      +.+.++++++ ++|++.+   +..++..++|.|||+    ||++ |+++.|.++++++.+            ++.|+.+|
T Consensus        18 ~~~~v~~l~~~~~~~~~l---~~~~~k~vvv~F~a~----wC~~-C~~~~p~l~~l~~~~------------~v~~~~vd   77 (133)
T 3cxg_A           18 GQSIYIELKNTGSLNQVF---SSTQNSSIVIKFGAV----WCKP-CNKIKEYFKNQLNYY------------YVTLVDID   77 (133)
T ss_dssp             TTEEEEECCCTTHHHHHH---TC-CCSEEEEEEECT----TCHH-HHHTHHHHHGGGGTE------------ECEEEEEE
T ss_pred             CCccEEEecChhHHHHHH---HhcCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHhc------------CEEEEEEe
Confidence            3456999997 8999987   444566899999999    8999 899999999877543            48999999


Q ss_pred             ccCCcchHhHcCCCCCceEEEEc--CCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          123 FKESQSSFALFAVNSLPHIRLVG--PDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       123 ~~~~~~lf~~~~I~svP~l~~fp--p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++++.++|+++++|++++|.  .+.|..      ...+.|. +.+++.++|++.++
T Consensus        78 ~~~~~~l~~~~~v~~~Pt~~~~~~~~g~g~~------~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           78 VDIHPKLNDQHNIKALPTFEFYFNLNNEWVL------VHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEEEETTEEEE------EEEEESC-CHHHHHHHHHHHSE
T ss_pred             ccchHHHHHhcCCCCCCEEEEEEecCCCeEE------EEEEcCC-CHHHHHHHHHHHHH
Confidence            99999999999999999999995  332112      1333444 78999999998765

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.52  E-value=4e-14  Score=116.39  Aligned_cols=109  Identities=11%  Similarity=0.098  Sum_probs=82.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..|+++|+++|.+.+  .+.+++-.++|.|||+    ||++ |+.+.|.++++|+.|           .++.|+++|+++
T Consensus         3 G~v~~it~~~f~~~v--~~~~~~~~vvv~F~a~----wc~~-C~~~~p~l~~la~~~-----------~~v~f~kvd~d~   64 (118)
T 3evi_A            3 GELREISGNQYVNEV--TNAEEDVWVIIHLYRS----SIPM-CLLVNQHLSLLARKF-----------PETKFVKAIVNS   64 (118)
T ss_dssp             CSCEECCGGGHHHHT--TTCCTTCEEEEEEECT----TSHH-HHHHHHHHHHHHHHC-----------TTSEEEEEEGGG
T ss_pred             cceEEeCHHHHHHHH--HhcCCCCeEEEEEeCC----CChH-HHHHHHHHHHHHHHC-----------CCCEEEEEEhHH
Confidence            358999999999987  2443345799999999    8999 899999999999876           148999999998


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCcccccccc-ccccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQG-DFARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~-~~~~~a~~l~~fi~~~  177 (347)
                      .   .++|+++++||+++|+.|  +..+........ ....+.+++..+|.+.
T Consensus        65 ~---~~~~~v~~~PT~~~fk~G--~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           65 C---IQHYHDNCLPTIFVYKNG--QIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             T---STTCCGGGCSEEEEEETT--EEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             h---HHHCCCCCCCEEEEEECC--EEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            6   489999999999999964  432010011111 1146799999998763

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.52  E-value=5.7e-14  Score=110.30  Aligned_cols=102  Identities=12%  Similarity=0.136  Sum_probs=82.7

Q ss_pred             eEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |.++ ++++|++.+   +..++..++|.|+|+    ||++ |+++.|+++++++.+           +++.|+.+|.+++
T Consensus         2 v~~i~~~~~~~~~l---~~~~~~~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~-----------~~~~~~~vd~~~~   62 (105)
T 3m9j_A            2 VKQIESKTAFQEAL---DAAGDKLVVVDFSAT----WCGP-CKMIKPFFHSLSEKY-----------SNVIFLEVDVDDC   62 (105)
T ss_dssp             CEECCSHHHHHHHH---HHTTTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHS-----------TTSEEEEEETTTC
T ss_pred             eEEcCCHHHHHHHH---HhcCCCeEEEEEECC----CChh-hHHHHHHHHHHHHHc-----------cCeEEEEEEhhhh
Confidence            3455 567899987   322355799999998    8999 899999999999876           1389999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++.++++++++|++++|+.|  +..      ..+.|. +.+++.+++++.
T Consensus        63 ~~~~~~~~v~~~Pt~~~~~~g--~~~------~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           63 QDVASESEVKSMPTFQFFKKG--QKV------GEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEEETT--EEE------EEEESS-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCcEEEEEECC--eEE------EEEeCC-CHHHHHHHHHHh
Confidence            999999999999999999653  332      344555 899999999875

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.51  E-value=5.6e-14  Score=116.99  Aligned_cols=110  Identities=13%  Similarity=0.191  Sum_probs=88.2

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      -|+++|++||++++   ++  +..++|+|||+     |++ |+.+.|.++++|++|          .+++.|+++|.+++
T Consensus         7 lv~~~t~~~f~~~~---~~--~~pv~v~f~a~-----~~~-c~~~~p~l~~~A~~~----------~gk~~f~~vd~d~~   65 (133)
T 2djk_A            7 LIGEIGPETYSDYM---SA--GIPLAYIFAET-----AEE-RKELSDKLKPIAEAQ----------RGVINFGTIDAKAF   65 (133)
T ss_dssp             CSEECCHHHHHHHH---HT--TSCEEEEECSC-----SSS-HHHHHHHHHHHHHSS----------TTTSEEEEECTTTT
T ss_pred             ceeccChHHHHHHh---cC--CCCEEEEEecC-----hhh-HHHHHHHHHHHHHHh----------CCeEEEEEEchHHh
Confidence            38899999999987   33  33699999996     789 799999999999987          35799999999999


Q ss_pred             cchHhHcCCCC--CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          127 QSSFALFAVNS--LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       127 ~~lf~~~~I~s--vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++.++|||++  +|++++|..+.|..    ..+. .++..+.++|.+|+++.+.-++
T Consensus        66 ~~~a~~~gi~~~~iPtl~i~~~~~g~~----~~~~-~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           66 GAHAGNLNLKTDKFPAFAIQEVAKNQK----FPFD-QEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             GGGTTTTTCCSSSSSEEEEECTTTCCB----CCCC-SSSCCCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCCcccCCEEEEEecCcCcc----cCCC-CccccCHHHHHHHHHHHHcCCc
Confidence            99999999999  99999998522221    1111 1266789999999998775544

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.51  E-value=7.2e-14  Score=140.64  Aligned_cols=113  Identities=13%  Similarity=0.236  Sum_probs=95.8

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +++|++||++||++.+   +.  +..++|.|||+    ||++ |+++.|+|+++|+.+.         +.++.|+++|++
T Consensus        13 ~~~v~~l~~~~f~~~~---~~--~~~~lv~F~a~----wC~~-C~~~~p~~~~~a~~~~---------~~~v~~~~vd~~   73 (504)
T 2b5e_A           13 DSAVVKLATDSFNEYI---QS--HDLVLAEFFAP----WCGH-CKNMAPEYVKAAETLV---------EKNITLAQIDCT   73 (504)
T ss_dssp             TSSCEECCTTTHHHHH---TT--CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHTT---------TTTCEEEEEETT
T ss_pred             CCCcEECCHHHHHHHH---hc--CCeEEEEEECC----CCHH-HHHhHHHHHHHHHHhc---------cCCeEEEEEECC
Confidence            4579999999999997   33  44799999999    8999 8999999999999872         125999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++++++++|+|+++||+++|++|  ..    .....|.|.+++++|.+|+.+.++..+
T Consensus        74 ~~~~l~~~~~v~~~Pt~~~~~~g--~~----~~~~~~~G~~~~~~l~~~l~~~~~~~v  125 (504)
T 2b5e_A           74 ENQDLCMEHNIPGFPSLKIFKNS--DV----NNSIDYEGPRTAEAIVQFMIKQSQPAV  125 (504)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEETT--CT----TCEEECCSCCSHHHHHHHHHHHTSCSE
T ss_pred             CCHHHHHhcCCCcCCEEEEEeCC--cc----ccceeecCCCCHHHHHHHHHHhcCCcc
Confidence            99999999999999999999864  22    002566788999999999999998654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.50  E-value=8.3e-14  Score=124.50  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=92.1

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..++++++++|++.+   ..  +..++|.|||+    ||++ |+.+.|+++++++.+          ++++.|+.+|+++
T Consensus        97 ~~v~~l~~~~f~~~~---~~--~~~vlv~F~a~----wC~~-C~~~~p~~~~l~~~~----------~~~v~~~~vd~~~  156 (210)
T 3apq_A           97 PEIITLERREFDAAV---NS--GELWFVNFYSP----GCSH-CHDLAPTWREFAKEV----------DGLLRIGAVNCGD  156 (210)
T ss_dssp             TTSEECCHHHHHHHH---HH--SCCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------BTTBEEEEEETTT
T ss_pred             CceEEecHHHHHHHH---cc--CCcEEEEEeCC----CChh-HHHHHHHHHHHHHHh----------cCceEEEEEECCc
Confidence            358999999999987   22  33699999999    8999 899999999999886          2369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++++++++++++|++++|+.  |+..      ..+.|..+.+++.+||++.++..+
T Consensus       157 ~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          157 DRMLCRMKGVNSYPSLFIFRS--GMAA------VKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             CHHHHHHTTCCSSSEEEEECT--TSCC------EECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             cHHHHHHcCCCcCCeEEEEEC--CCce------eEecCCCCHHHHHHHHHHhCcccc
Confidence            999999999999999999965  3432      445667889999999999887655

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.50  E-value=6.8e-14  Score=126.22  Aligned_cols=112  Identities=17%  Similarity=0.216  Sum_probs=94.1

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .+++|+++|+++|++.+   ..  +..++|.|||+    ||++ |+++.|+++++|+.+...       +.++.|+.+|+
T Consensus        13 ~~~~v~~l~~~~~~~~~---~~--~~~v~v~F~a~----wC~~-C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~   75 (241)
T 3idv_A           13 EENGVLVLNDANFDNFV---AD--KDTVLLEFYAP----WCGH-CKQFAPEYEKIANILKDK-------DPPIPVAKIDA   75 (241)
T ss_dssp             EETTEEEECTTTHHHHH---TT--CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHHTS-------SSCCCEEEEET
T ss_pred             cCCCcEEecccCHHHHH---hc--CCeEEEEEECC----CCHH-HHHhhHHHHHHHHHHhhc-------CCceEEEEEec
Confidence            34679999999999997   33  34799999999    8999 899999999999998532       23599999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +++++++++|+|+++||+++|++|  +.       ..+.+.++.+++.+|+.+..+..
T Consensus        76 ~~~~~l~~~~~v~~~Pt~~~~~~g--~~-------~~~~g~~~~~~l~~~i~~~~~~~  124 (241)
T 3idv_A           76 TSASVLASRFDVSGYPTIKILKKG--QA-------VDYEGSRTQEEIVAKVREVSQPD  124 (241)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEETT--EE-------EECCSCSCHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHhcCCCcCCEEEEEcCC--Cc-------ccccCcccHHHHHHHHhhccCcc
Confidence            999999999999999999999753  22       13567789999999999987653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.50  E-value=5.6e-14  Score=113.30  Aligned_cols=102  Identities=9%  Similarity=0.126  Sum_probs=83.7

Q ss_pred             CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +++++++ ++|++.+   +..++..++|.|||+    ||++ |+++.|.++++++.+            ++.|+.+|.++
T Consensus        14 ~v~~l~~~~~~~~~l---~~~~~~~~vv~f~a~----wC~~-C~~~~~~~~~~~~~~------------~~~~~~vd~~~   73 (117)
T 2xc2_A           14 ELIELKQDGDLESLL---EQHKNKLVVVDFFAT----WCGP-CKTIAPLFKELSEKY------------DAIFVKVDVDK   73 (117)
T ss_dssp             EEEECCSTTHHHHHH---HHTTTSCEEEEEECT----TCHH-HHHHHHHHHHHHTTS------------SSEEEEEETTT
T ss_pred             eeEEeCCHHHHHHHH---HhCCCCEEEEEEECC----CCHh-HHHHhHHHHHHHHHc------------CcEEEEEECCc
Confidence            4999999 9999988   322345799999998    8999 899999999988653            48999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ++++.++++++++|++++|+.  |+..      ..+.| .+.+++.++|++.
T Consensus        74 ~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           74 LEETARKYNISAMPTFIAIKN--GEKV------GDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             SHHHHHHTTCCSSSEEEEEET--TEEE------EEEES-SCHHHHHHHHHHH
T ss_pred             cHHHHHHcCCCccceEEEEeC--CcEE------EEEeC-CCHHHHHHHHHHh
Confidence            999999999999999999964  3332      33344 5788999999875

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.50  E-value=2.4e-13  Score=122.55  Aligned_cols=110  Identities=12%  Similarity=0.119  Sum_probs=93.4

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.+..+++++|++.+   +.  +..++|.|||+    ||++ |+.+.|+++++|+.+...       ..++.|+++|+++
T Consensus       130 ~~~~~~~~~~~~~~~---~~--~~~~~v~f~a~----wC~~-C~~~~p~~~~~a~~~~~~-------~~~v~~~~vd~~~  192 (241)
T 3idv_A          130 EVTLVLTKENFDEVV---ND--ADIILVEFYAP----WCGH-CKKLAPEYEKAAKELSKR-------SPPIPLAKVDATA  192 (241)
T ss_dssp             CSSEECCTTTHHHHH---HH--CSEEEEEEECT----TCTG-GGGTHHHHHHHHHHHHTS-------SSCCCEEEEETTT
T ss_pred             ccceeccHHHHHHhh---cc--CCeEEEEEECC----CCHH-HHHhHHHHHHHHHHHhcc-------CCcEEEEEEECCC
Confidence            468999999999998   22  23689999999    8999 899999999999998643       2469999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +++++++|+|+++|++++|++|  +.       ..|.+.++.++|.+||+++++..
T Consensus       193 ~~~l~~~~~v~~~Pt~~~~~~g--~~-------~~~~g~~~~~~l~~~l~~~~~~~  239 (241)
T 3idv_A          193 ETDLAKRFDVSGYPTLKIFRKG--RP-------YDYNGPREKYGIVDYMIEQSGAA  239 (241)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETT--EE-------EECCSCCSHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHcCCcccCEEEEEECC--eE-------EEecCCCCHHHHHHHHHhhhCCC
Confidence            9999999999999999999863  32       22677899999999999998753

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.49  E-value=9.5e-14  Score=114.48  Aligned_cols=104  Identities=10%  Similarity=0.089  Sum_probs=85.8

Q ss_pred             CCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..|+++++ ++|++.+   +.  +..++|.|||+    ||++ |+.+.|+++++++.+           +++.|+.+|++
T Consensus        19 ~mv~~l~~~~~f~~~~---~~--~k~vvv~F~a~----wC~~-C~~~~p~l~~l~~~~-----------~~v~~~~vd~d   77 (125)
T 1r26_A           19 PSVVDVYSVEQFRNIM---SE--DILTVAWFTAV----WCGP-CKTIERPMEKIAYEF-----------PTVKFAKVDAD   77 (125)
T ss_dssp             SCCEEECCHHHHHHHH---HS--SSCEEEEEECT----TCHH-HHHTHHHHHHHHHHC-----------TTSEEEEEETT
T ss_pred             cceEECCCHHHHHHHH---cc--CCEEEEEEECC----cCHh-HHHHHHHHHHHHHHC-----------CCCEEEEEECC
Confidence            34899999 9999987   22  33699999999    8999 899999999999876           14899999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++++++|+++++|++++|+.  |+..      ..+.+ .+.+++.++|++.++
T Consensus        78 ~~~~l~~~~~v~~~Pt~~i~~~--G~~~------~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           78 NNSEIVSKCRVLQLPTFIIARS--GKML------GHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEET--TEEE------EEEES-SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCCcccEEEEEeC--CeEE------EEEeC-CCHHHHHHHHHHHhc
Confidence            9999999999999999999964  3332      33344 578899999987654

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.49  E-value=1.4e-13  Score=107.77  Aligned_cols=102  Identities=9%  Similarity=0.131  Sum_probs=83.0

Q ss_pred             eEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |.++++ ++|++.+   +..++..++|.|+++    ||++ |+++.|.++++++.+           +++.|+.+|.+++
T Consensus         1 v~~i~~~~~~~~~l---~~~~~~~~~v~f~~~----~C~~-C~~~~~~l~~~~~~~-----------~~~~~~~v~~~~~   61 (104)
T 2vim_A            1 MRVLATAADLEKLI---NENKGRLIVVDFFAQ----WCGP-CRNIAPKVEALAKEI-----------PEVEFAKVDVDQN   61 (104)
T ss_dssp             CEECCSHHHHHHHH---HTTTTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEETTTC
T ss_pred             CeecCCHHHHHHHH---HhcCCCeEEEEEECC----CCHH-HHHhhHHHHHHHHHC-----------CCCEEEEEeccCC
Confidence            467888 8999988   322355799999998    8999 899999999999875           1589999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++.++++++++|++++|+.  |+..      ..+.| .+.+++.+||++.
T Consensus        62 ~~~~~~~~v~~~Pt~~~~~~--g~~~------~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           62 EEAAAKYSVTAMPTFVFIKD--GKEV------DRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             HHHHHHTTCCSSSEEEEEET--TEEE------EEEES-SCHHHHHHHHHHH
T ss_pred             HHHHHHcCCccccEEEEEeC--CcEE------EEEeC-CCHHHHHHHHHhh
Confidence            99999999999999999974  3332      23344 5788999999875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.49  E-value=1.9e-13  Score=126.41  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=89.4

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEe--cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFD--AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fT--A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      +++|++||++||++.+   +.  +..++|.||  |+    ||+     +.|+|+++|+.+...       .+++.|++||
T Consensus        15 ~~~v~~Lt~~nF~~vi---~~--~~~vlV~Fy~~Ap----WCg-----l~P~~e~lA~~~~~~-------~~~v~~akVD   73 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTV---ER--FPYSVVKFDIASP----YGE-----KHEAFTAFSKSAHKA-------TKDLLIATVG   73 (248)
T ss_dssp             CTTCEECCTTTHHHHH---TT--SSEEEEEEEESSC----CSH-----HHHHHHHHHHHHHHH-------CSSEEEEEEE
T ss_pred             CCCcEECCHHHHHHHH---hc--CCCEEEEEECCCC----CCc-----cHHHHHHHHHHHhcc-------CCCeEEEEEE
Confidence            4679999999999976   33  347999999  88    765     899999999998531       2479999999


Q ss_pred             ccC-----CcchHhHcCCC--CCceEEEEcCCCCCCCCcccccccc--ccccCHHHHHHHHHhhcCCC
Q 048343          123 FKE-----SQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQG--DFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       123 ~~~-----~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~--~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +++     +++++++|+|+  ++||+++|+ |...      ....|  .++++.++|.+||++++|..
T Consensus        74 ~d~~g~~~n~~la~~~~V~~~~~PTl~~F~-G~~~------~~~~y~~~G~~~~~~L~~fi~~~~~~~  134 (248)
T 2c0g_A           74 VKDYGELENKALGDRYKVDDKNFPSIFLFK-GNAD------EYVQLPSHVDVTLDNLKAFVSANTPLY  134 (248)
T ss_dssp             ECSSTTCTTHHHHHHTTCCTTSCCEEEEES-SSSS------SEEECCTTSCCCHHHHHHHHHHHSSCC
T ss_pred             CCcccccccHHHHHHhCCCcCCCCeEEEEe-CCcC------cceeecccCCCCHHHHHHHHHHhhccc
Confidence            998     88999999999  999999998 6311      12345  67899999999999998844

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.49  E-value=2.1e-13  Score=124.47  Aligned_cols=117  Identities=11%  Similarity=0.066  Sum_probs=92.2

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-  123 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-  123 (347)
                      ++.|.+||+++|++.+  .+.  +..++|.|||+    ||++ |+++.|+|+++|+.+...       ..++.|+++|+ 
T Consensus        11 ~~~v~~l~~~~f~~~i--~~~--~~~vlv~F~a~----wC~~-C~~~~p~~~~l~~~~~~~-------~~~v~~~~vd~~   74 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAV--LGS--RSAWAVEFFAS----WCGH-CIAFAPTWXALAEDVKAW-------RPALYLAALDCA   74 (244)
T ss_dssp             TSSSEEECTTTHHHHH--SSC--SSEEEEEEECT----TCHH-HHHHHHHHHHHHHHTGGG-------TTTEEEEEEETT
T ss_pred             CCCceeCChhhHHHHH--hhC--CCeEEEEEECC----cCHH-HHHHHHHHHHHHHHHHhc-------cCcEEEEEEeCC
Confidence            4679999999999987  232  35799999999    8999 899999999999988431       24799999999 


Q ss_pred             -cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          124 -KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       124 -~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                       +++++++++++|+++|++++|.++. +.  .......+. +.+.+++.++|.+.++.+
T Consensus        75 ~~~~~~l~~~~~v~~~Pt~~~~~~g~-~~--~~g~~~~~~-g~~~~~l~~~i~~~l~~~  129 (244)
T 3q6o_A           75 EETNSAVCRDFNIPGFPTVRFFXAFT-XN--GSGAVFPVA-GADVQTLRERLIDALESH  129 (244)
T ss_dssp             STTTHHHHHHTTCCSSSEEEEECTTC-CS--SSCEECCCT-TCCHHHHHHHHHHHHHTC
T ss_pred             chhhHHHHHHcCCCccCEEEEEeCCC-cC--CCCeeEecC-CCCHHHHHHHHHHHHHhc
Confidence             5688999999999999999999753 21  111112333 368999999998887654

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.48  E-value=1e-13  Score=112.26  Aligned_cols=108  Identities=14%  Similarity=0.095  Sum_probs=86.5

Q ss_pred             CCeEEcChhhHHHHhcccC-CCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHLNDQLVSRFLTSTK-TPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~-~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +.+..+|+++|++.+.  + ..++..++|.||++    ||++ |+++.|.++++++.+          .+ +.|+.+|++
T Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~-~~~~~vd~~   74 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIE--EANTAKKLVVIDFTAS----WCGP-CRIMAPVFADLAKKF----------PN-AVFLKVDVD   74 (122)
T ss_dssp             CCEEECSHHHHHHHHH--HHHHTTCCEEEEEECT----TCHH-HHHHHHHHHHHHHHC----------TT-SEEEEEETT
T ss_pred             cceeccCHHHHHHHHH--HhhccCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHC----------CC-cEEEEEECC
Confidence            4577789999999872  2 01244799999998    8999 899999999999875          12 899999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      +++++.++|+++++|++++|+.  |+..      ..+.|.. .+++.+||++.++.
T Consensus        75 ~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~-~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           75 ELKPIAEQFSVEAMPTFLFMKE--GDVK------DRVVGAI-KEELTAKVGLHAAA  121 (122)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEET--TEEE------EEEESSC-HHHHHHHHHHHHSC
T ss_pred             CCHHHHHHcCCCcccEEEEEeC--CEEE------EEEeCcC-HHHHHHHHHHHhcc
Confidence            9999999999999999999964  3332      3344555 89999999987653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.47  E-value=1.7e-13  Score=131.85  Aligned_cols=109  Identities=13%  Similarity=0.166  Sum_probs=92.4

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-------HHHHHHHhhhcCCCCCCCCCceE
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-------FSLVASSFIANNVDNPSSRGKLF  117 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-------fe~vA~s~~~~~p~~~~~~~~v~  117 (347)
                      ++.|++||++||++.+   +.  +..++|.|||+    ||+ | +.+.|+       |+++|+.+..         .++.
T Consensus        10 ~~~v~~l~~~~f~~~i---~~--~~~~lV~F~a~----wC~-c-~~~~p~~~~~~~~~~~~a~~~~~---------~~v~   69 (350)
T 1sji_A           10 KDRVVSLTEKNFKQVL---KK--YDVLCLYYHES----VSS-D-KVAQKQFQLKEIVLELVAQVLEH---------KDIG   69 (350)
T ss_dssp             CCCCEEECHHHHHHHH---TT--CSEEEEEEECC----SCS-S-STTSHHHHHHHHHHHHHHHHGGG---------SSEE
T ss_pred             CCccEECCHHHHHHHH---hh--CCeEEEEEECC----CCc-c-hhhCchhhhhhHHHHHHHHHHhh---------cCcE
Confidence            4579999999999998   33  34799999999    899 7 999999       8999988731         2699


Q ss_pred             EEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          118 FCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       118 F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      |++||++++++++++++|+++||+++|+.|  +.       ..|.|.+++++|.+|+++.++..+
T Consensus        70 ~~~Vd~~~~~~l~~~~~v~~~Pt~~~~~~g--~~-------~~~~G~~~~~~l~~~i~~~~~~~~  125 (350)
T 1sji_A           70 FVMVDAKKEAKLAKKLGFDEEGSLYVLKGD--RT-------IEFDGEFAADVLVEFLLDLIEDPV  125 (350)
T ss_dssp             EEEEETTTTHHHHHHHTCCSTTEEEEEETT--EE-------EEECSCCCHHHHHHHHHTTSSCSE
T ss_pred             EEEEeCCCCHHHHHhcCCCccceEEEEECC--cE-------EEecCCCCHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999754  21       356788999999999999988554

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.47  E-value=1.6e-13  Score=116.66  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=88.7

Q ss_pred             CCCeEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           45 EAGVIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        45 ~~~VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .+.+++++ .++|++.+   +..++..++|.|||+    ||++ |+++.|+++++++.+           +++.|+++|+
T Consensus        11 ~~~v~~l~~~~~~~~~~---~~~~~~~vvv~F~a~----wC~~-C~~~~p~l~~l~~~~-----------~~v~~~~vd~   71 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELL---RLKAKSLLVVHFWAP----WAPQ-CAQMNEVMAELAKEL-----------PQVSFVKLEA   71 (153)
T ss_dssp             -CCSEEECSHHHHHHHH---HHTTTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEET
T ss_pred             cCCeEEcCCHHHHHHHH---HhcCCCeEEEEEECC----CCHh-HHHHHHHHHHHHHHc-----------CCeEEEEEEC
Confidence            35699998 48999988   332355799999999    8999 899999999999875           2589999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      ++++++.++|+++++|++++|..  |+..      ..+.+ .+.+++.+||++.++..
T Consensus        72 ~~~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G-~~~~~l~~~i~~~l~~~  120 (153)
T 2wz9_A           72 EGVPEVSEKYEISSVPTFLFFKN--SQKI------DRLDG-AHAPELTKKVQRHASSG  120 (153)
T ss_dssp             TTSHHHHHHTTCCSSSEEEEEET--TEEE------EEEES-SCHHHHHHHHHHHSCTT
T ss_pred             CCCHHHHHHcCCCCCCEEEEEEC--CEEE------EEEeC-CCHHHHHHHHHHHhccc
Confidence            99999999999999999999983  4432      23333 46788999999988754

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.46  E-value=1.4e-13  Score=112.43  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=88.9

Q ss_pred             CCeEEcChhhHH-----HHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEE
Q 048343           46 AGVIHLNDQLVS-----RFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCY  120 (347)
Q Consensus        46 ~~VI~L~~~nf~-----~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~  120 (347)
                      +.+.+++.++|+     ...     .++..++|.|||+    ||++ |+++.|+++++++.+.          +++.|+.
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~-----~~~k~~lv~f~a~----wC~~-C~~~~~~l~~~~~~~~----------~~v~~~~   63 (126)
T 2l57_A            4 EGIKQINFQSINVVENLEEA-----KEGIPTIIMFKTD----TCPY-CVEMQKELSYVSKERE----------GKFNIYY   63 (126)
T ss_dssp             CCSSCTTTTCCSEESSTTTC-----CSSSCEEEEEECS----SCHH-HHHHHHHHHHHHHHSS----------SSCEEEE
T ss_pred             cccCCCCccccchhHHHHHH-----hCCCcEEEEEECC----CCcc-HHHHHHHHHHHHHHhc----------CCeEEEE
Confidence            467888888887     332     2344799999999    8999 8999999999998762          4699999


Q ss_pred             EE--ccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          121 LE--FKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       121 vD--~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +|  +++++++.++|+++++|++++|.++ |+..      ..+.|..+.+++.++|++..+..
T Consensus        64 v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~-G~~~------~~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           64 ARLEEEKNIDLAYKYDANIVPTTVFLDKE-GNKF------YVHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             EETTSSHHHHHHHHTTCCSSSEEEEECTT-CCEE------EEEESCCCHHHHHHHHHHHCCCC
T ss_pred             EeCCCCchHHHHHHcCCcceeEEEEECCC-CCEE------EEecCCCCHHHHHHHHHHHhccc
Confidence            99  9999999999999999999999864 4432      34456678999999999988754

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.46  E-value=2.4e-13  Score=108.84  Aligned_cols=105  Identities=10%  Similarity=0.080  Sum_probs=85.7

Q ss_pred             CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           44 SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        44 s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +++....+|+++|++.+   +  ++..++|.|+|+    ||++ |+++.|+++++++.+           +++.|+.+|+
T Consensus         7 ~~~~~~~~~~~~f~~~~---~--~~k~vlv~f~a~----~C~~-C~~~~~~l~~l~~~~-----------~~v~~~~vd~   65 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSII---S--QNELVIVDFFAE----WCGP-CKRIAPFYEECSKTY-----------TKMVFIKVDV   65 (112)
T ss_dssp             --CCEEECSHHHHHHHH---H--HCSEEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEET
T ss_pred             ceeEEEECCHHHHHHHH---c--cCCeEEEEEECC----CCHH-HHHHHHHHHHHHHHc-----------CCCEEEEEEC
Confidence            34568899999999998   3  244799999998    8999 899999999999875           1489999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++++++++++++|++++|+.  |+..      ..+.|. +.+++.+||++.+
T Consensus        66 ~~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           66 DEVSEVTEKENITSMPTFKVYKN--GSSV------DTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             TTTHHHHHHTTCCSSSEEEEEET--TEEE------EEEESC-CHHHHHHHHHTTC
T ss_pred             CCCHHHHHHcCCCcccEEEEEEC--CcEE------EEEeCC-CHHHHHHHHHHhh
Confidence            99999999999999999999974  3332      334455 8999999998754

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.46  E-value=2.1e-13  Score=111.94  Aligned_cols=109  Identities=12%  Similarity=0.110  Sum_probs=86.0

Q ss_pred             CCCCeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           44 SEAGVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        44 s~~~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      +...|+++ |.++|++.+.. ...++..++|.|||+    ||++ |+++.|+++++++.+           +++.|+.+|
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~-~~~~~k~vvv~f~a~----wC~~-C~~~~~~l~~l~~~~-----------~~v~~~~vd   76 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQK-ANESKTLVVVDFTAS----WCGP-CRFIAPFFADLAKKL-----------PNVLFLKVD   76 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHH-HHHTTCEEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------SSEEEEEEE
T ss_pred             CCCcEEEeCCHHHHHHHHHH-hhhcCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHC-----------CCcEEEEEE
Confidence            34569999 66899998731 111245799999998    8999 899999999999875           159999999


Q ss_pred             ccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          123 FKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       123 ~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++++.++|+++++|++++|+.  |+..      ..+.+ .+.+++.++|++.+
T Consensus        77 ~d~~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           77 TDELKSVASDWAIQAMPTFMFLKE--GKIL------DKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             TTTSHHHHHHTTCCSSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHHC
T ss_pred             CccCHHHHHHcCCCccCEEEEEEC--CEEE------EEEeC-CCHHHHHHHHHHhc
Confidence            999999999999999999999964  3332      23334 47889999998764

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=6.9e-13  Score=110.62  Aligned_cols=110  Identities=10%  Similarity=0.055  Sum_probs=84.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.++++|+++|++.+  .+..++..++|.|||+    ||++ |+.+.|.++++|+.+           .++.|+++|+++
T Consensus        10 g~v~~i~~~~~~~~v--~~~~~~~~vvv~f~a~----wC~~-C~~~~p~l~~la~~~-----------~~v~~~~vd~~~   71 (135)
T 2dbc_A           10 GELREISGNQYVNEV--TNAEKDLWVVIHLYRS----SVPM-CLVVNQHLSVLARKF-----------PETKFVKAIVNS   71 (135)
T ss_dssp             CSCEECCHHHHHHHT--TTCCSSCEEEEEECCT----TCHH-HHHHHHHHHHHHHHC-----------SSEEEEEECCSS
T ss_pred             CceEEcCHHHHHHHH--HhcCCCCEEEEEEECC----CChH-HHHHHHHHHHHHHHC-----------CCcEEEEEEhhc
Confidence            359999999999987  2333345799999999    8999 899999999999875           258999999998


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCcccccccc---cc-ccCHHHHHHHHHhhcCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQG---DF-ARMAESMADFVQSRTKLT  181 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~---~~-~~~a~~l~~fi~~~t~~~  181 (347)
                      .+   ++|+|+++||+++|..  |+..   +.+...   ++ ..+.++|.++|++...++
T Consensus        72 ~~---~~~~i~~~Pt~~~~~~--G~~v---~~~~G~~~~~~~~~~~~~l~~~l~~~~~i~  123 (135)
T 2dbc_A           72 CI---EHYHDNCLPTIFVYKN--GQIE---GKFIGIIECGGINLKLEELEWKLSEVGAIQ  123 (135)
T ss_dssp             SC---SSCCSSCCSEEEEESS--SSCS---EEEESTTTTTCTTCCHHHHHHHHHHHTSSC
T ss_pred             Cc---ccCCCCCCCEEEEEEC--CEEE---EEEEeEEeeCCCcCCHHHHHHHHHHcCCcc
Confidence            76   6899999999999985  4432   111111   11 237899999999875443

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.45  E-value=4.8e-13  Score=123.15  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEec--CCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDA--HQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA--~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      .++|++||++||++.+   +.  +..++|.|||  +    ||+     +.|+|+++|+.+..        .+++.|++||
T Consensus         4 ~~~v~~Lt~~nF~~~i---~~--~~~vlV~FyA~~p----WCg-----l~P~~e~lA~~~~~--------~~~v~~akVD   61 (240)
T 2qc7_A            4 TKGALPLDTVTFYKVI---PK--SKFVLVKFDTQYP----YGE-----KQDEFKRLAENSAS--------SDDLLVAEVG   61 (240)
T ss_dssp             CTTCEECCTTHHHHHG---GG--CSEEEEEECCSSC----CSH-----HHHHHHHHHHHHTT--------CTTEEEEEEC
T ss_pred             CCCceECCHHHHHHHH---cC--CCCEEEEEeCCCC----CCc-----chHHHHHHHHHhcC--------CCCeEEEEEe
Confidence            4689999999999987   33  3479999999  8    765     89999999998842        2469999999


Q ss_pred             ccC-----CcchHhHcCCC--CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          123 FKE-----SQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       123 ~~~-----~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++     +++++++|+|+  ++||+++|++|....      ...|.|.+++++|.+||++++
T Consensus        62 vd~~g~~~~~~l~~~~~V~~~~~PTl~~f~~G~~~~------~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           62 ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFEN------PVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CCCSSSCCSHHHHHHTTCCGGGCSEEEEEETTCSSC------CEECCSCSCHHHHHHHHHHTT
T ss_pred             CCcccchhhHHHHHHcCCCCCCCCEEEEEeCCCcCc------ceeecCCCCHHHHHHHHHHhc
Confidence            765     78999999999  999999999752011      245678899999999999986

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.45  E-value=5.9e-13  Score=120.15  Aligned_cols=110  Identities=16%  Similarity=0.194  Sum_probs=91.7

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ...+..+|+++|++.+  .+.  +..++|.|||+    ||++ |+.+.|.++++++.+.          +++.|+.+|++
T Consensus        11 ~~~~~~lt~~~f~~~v--~~~--~k~vvv~F~a~----wC~~-C~~~~p~l~~l~~~~~----------~~v~~~~vd~d   71 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDV--LKA--DGAILVDFWAE----WCGP-CKMIAPILDEIADEYQ----------GKLTVAKLNID   71 (222)
T ss_dssp             SCCCEECCTTTHHHHH--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHTT----------TTCEEEEEETT
T ss_pred             CCCceeCCHHHHHHHH--Hhc--CCEEEEEEECC----cCHH-HHHHHHHHHHHHHHhc----------CCcEEEEEECC
Confidence            4569999999999865  233  34799999999    8999 8999999999998872          35999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +++++.++|+|+++|++++|+.  |+..      ..+.+..+.+++.+||++.+...
T Consensus        72 ~~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           72 QNPGTAPKYGIRGIPTLLLFKN--GEVA------ATKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             TCTTTGGGGTCCSBSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHSCCS
T ss_pred             CCHHHHHHcCCCcCCEEEEEEC--CeEE------EEeccccChHHHHHHHHhhcccc
Confidence            9999999999999999999974  3332      34556788999999999987644

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.45  E-value=1e-13  Score=115.38  Aligned_cols=103  Identities=5%  Similarity=-0.025  Sum_probs=86.4

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc--
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF--  123 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~--  123 (347)
                      +.++++|+++|++.+   ++    .++|.|||+    ||++ |+++.|.++++++.+            ++.|+.+|+  
T Consensus        16 ~~v~~l~~~~~~~~~---~~----~vlv~F~a~----wC~~-C~~~~p~l~~l~~~~------------~v~~~~vd~~~   71 (135)
T 3emx_A           16 GRLIYITPEEFRQLL---QG----DAILAVYSK----TCPH-CHRDWPQLIQASKEV------------DVPIVMFIWGS   71 (135)
T ss_dssp             TEEEECCHHHHHHHH---TS----SEEEEEEET----TCHH-HHHHHHHHHHHHTTC------------CSCEEEEEECT
T ss_pred             CceeecCHHHHHHHh---CC----cEEEEEECC----cCHh-hhHhChhHHHHHHHC------------CCEEEEEECCC
Confidence            469999999999998   33    799999999    8999 899999999998754            288999999  


Q ss_pred             -------cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          124 -------KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       124 -------~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                             ++++++.++|+++++|++++|..  |+..      ..+.|..+.+.+.+++++..+.
T Consensus        72 ~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~--G~~v------~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           72 LIGERELSAARLEMNKAGVEGTPTLVFYKE--GRIV------DKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             TCCHHHHHHHHHHHHHHTCCSSSEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHC--
T ss_pred             chhhhhhhhhHHHHHHcCCceeCeEEEEcC--CEEE------EEEeCCCCHHHHHHHHHHHhCC
Confidence                   88889999999999999999984  4432      4456778899999999988764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.44  E-value=7.1e-13  Score=105.92  Aligned_cols=101  Identities=9%  Similarity=-0.009  Sum_probs=82.1

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      ..-..++++|++.+   +.  +..++|.|||+    ||++ |+++.|+++++++.+           +++.|+.+|++++
T Consensus         8 ~~~~~~~~~f~~~~---~~--~k~vlv~f~a~----wC~~-C~~~~p~l~~l~~~~-----------~~~~~~~vd~~~~   66 (109)
T 3f3q_A            8 VTQFKTASEFDSAI---AQ--DKLVVVDFYAT----WCGP-CKMIAPMIEKFSEQY-----------PQADFYKLDVDEL   66 (109)
T ss_dssp             CEECCSHHHHHHHT---TS--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEETTTC
T ss_pred             ccCCCCHHHHHHHH---hc--CCEEEEEEECC----cCHh-HHHHHHHHHHHHHHC-----------CCCEEEEEECCCC
Confidence            35566788999987   33  34799999999    8999 899999999999876           1489999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++.++++++++|++++|..  |+..      .++.+. +.+++.++|++.
T Consensus        67 ~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           67 GDVAQKNEVSAMPTLLLFKN--GKEV------AKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             HHHHHHTTCCSSSEEEEEET--TEEE------EEEESS-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccCEEEEEEC--CEEE------EEEeCC-CHHHHHHHHHhh
Confidence            99999999999999999984  3432      333444 678999999875

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.44  E-value=3.5e-13  Score=114.61  Aligned_cols=121  Identities=10%  Similarity=0.083  Sum_probs=89.1

Q ss_pred             cChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchH
Q 048343           51 LNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSF  130 (347)
Q Consensus        51 L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf  130 (347)
                      .++++|++.+   ....+..++|.|||+    ||++ |+.+.|.++++++.+          ++++.|+++|+++++++.
T Consensus         9 ~~~~~~~~~i---~~~~~k~vlv~F~a~----WC~~-C~~~~p~l~~l~~~~----------~~~~~~~~vd~d~~~~l~   70 (149)
T 3gix_A            9 TSKKEVDQAI---KSTAEKVLVLRFGRD----EDPV-CLQLDDILSKTSSDL----------SKMAAIYLVDVDQTAVYT   70 (149)
T ss_dssp             CSHHHHHHHH---HHCCSSEEEEEEECT----TSHH-HHHHHHHHHHHHTTT----------TTTEEEEEEETTTCCHHH
T ss_pred             CCHHHHHHHH---HhcCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHc----------cCceEEEEEECCcCHHHH
Confidence            3678999987   211245799999999    8999 899999999999765          245999999999999999


Q ss_pred             hHcCCCCCceEEEEcCCCCCCC--C-cccccccccc-ccCHHHHHHHHHhhc-----CCCCCcccCCCCchh
Q 048343          131 ALFAVNSLPHIRLVGPDAKSLK--D-DSVQMEQGDF-ARMAESMADFVQSRT-----KLTVGPIHHPPLLSK  193 (347)
Q Consensus       131 ~~~~I~svP~l~~fpp~~g~~~--~-~~~~~~~~~~-~~~a~~l~~fi~~~t-----~~~i~~i~~p~~~~~  193 (347)
                      ++|+|+++|++++|+.|  +..  + ....-....+ ..+.+++.++|++..     |.  +-+..|.+|+.
T Consensus        71 ~~~~v~~~Pt~~~~~~G--~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~~g~--~~~~s~~~~~~  138 (149)
T 3gix_A           71 QYFDISYIPSTVFFFNG--QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGK--LIVQSPIDPKN  138 (149)
T ss_dssp             HHTTCCSSSEEEEEETT--EEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHHTTC--SEEECCSCGGG
T ss_pred             HHcCCCccCeEEEEECC--eEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhhcCC--ceEECCccccc
Confidence            99999999999999864  221  0 0000123345 567888888887653     32  24566777765

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.43  E-value=3.9e-13  Score=106.85  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=84.7

Q ss_pred             CCeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      +.++++ +.++|++.+.. ...++..++|.|+++    ||++ |+.+.|.++++++.+           +++.|+.+|++
T Consensus         4 ~~v~~i~~~~~~~~~~~~-~~~~~~~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~-----------~~v~~~~v~~~   66 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEK-GKGSQKLIVVDFTAS----WCPP-CKMIAPIFAELAKKF-----------PNVTFLKVDVD   66 (113)
T ss_dssp             CCEEEECSHHHHHHHHHH-HTTSSSEEEEEEECS----SCHH-HHHHHHHHHHHHHHC-----------SSEEEEEEETT
T ss_pred             CceeEeccHHHHHHHHHH-hhhcCCeEEEEEECC----CCHH-HHHHHHHHHHHHHhC-----------CCcEEEEEEcc
Confidence            459999 66899998731 112355799999998    8999 899999999999875           15999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++.++++++++|++++|+.  |+..      ..+.+ .+.+++.++|++.+
T Consensus        67 ~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           67 ELKAVAEEWNVEAMPTFIFLKD--GKLV------DKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TCHHHHHHHHCSSTTEEEEEET--TEEE------EEEEC-CCTTHHHHHHHHHH
T ss_pred             ccHHHHHhCCCCcccEEEEEeC--CEEE------EEEec-CCHHHHHHHHHHhh
Confidence            9999999999999999999964  3332      22333 46788889988754

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.42  E-value=5.1e-13  Score=107.03  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=86.0

Q ss_pred             CCCeEEc-ChhhHHHHhcccCC-CCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           45 EAGVIHL-NDQLVSRFLTSTKT-PRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        45 ~~~VI~L-~~~nf~~lv~~~~~-~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      .+.++++ ++++|++.+.  +. .++..++|.|+++    ||++ |+++.|.++++++.+           +++.|+.+|
T Consensus         5 ~~~v~~i~~~~~~~~~~~--~~~~~~~~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~-----------~~~~~~~v~   66 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMA--NGKDTGKLVIIDFTAS----WCGP-CRVIAPVFAEYAKKF-----------PGAIFLKVD   66 (118)
T ss_dssp             CCCEEECCSHHHHHHHHH--HHHHHTCCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEE
T ss_pred             CCceEEecCHHHHHHHHH--hcccCCCEEEEEEECC----CCHh-HHHHhHHHHHHHHHC-----------CCcEEEEEE
Confidence            3569999 5689999873  21 1234699999998    8999 899999999999875           158999999


Q ss_pred             ccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          123 FKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       123 ~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++++.++|+++++|++++|+.  |+..      ..+.+ .+.+++.++|++.++
T Consensus        67 ~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~------~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           67 VDELKDVAEAYNVEAMPTFLFIKD--GEKV------DSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             TTTSHHHHHHTTCCSBSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHHHC
T ss_pred             cccCHHHHHHcCCCcCcEEEEEeC--CeEE------EEecC-CCHHHHHHHHHHHhc
Confidence            999999999999999999999964  3332      23334 478899999988765

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.42  E-value=4.1e-14  Score=141.58  Aligned_cols=94  Identities=12%  Similarity=0.154  Sum_probs=77.4

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++.|+++|+++|++.+   ...++..++|.|||+    ||++ |+++.|+|+++|+.+....  +....+++.|++||++
T Consensus        22 ~~~V~~Lt~~~F~~~l---~~~~~k~VlV~FyA~----WC~p-Ck~~~P~l~~la~~~~~~~--g~~~~~~v~f~~VD~d   91 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVH---RVAPLCPWIVLFYND----GCGA-CRRYASTFSKFAGGLKVEH--GKDALQIATAAAVNCA   91 (470)
T ss_dssp             CTTEEECSCSCGGGTC---TTGGGSCEEEEEECT----TCHH-HHHHHHHHHHHHHTSCCSS--CSSGGGGCEEEEEETT
T ss_pred             CCCcEECCHHHHHHHH---HhCCCCeEEEEEECC----CCHH-HHHHHHHHHHHHHHHhhhc--ccccCceEEEEEEECC
Confidence            4579999999999987   333345799999999    8999 8999999999999874321  0000136999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDA  148 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~  148 (347)
                      ++++++++|+|+++||+++|.++.
T Consensus        92 ~~~~la~~y~V~~~PTlilf~~gg  115 (470)
T 3qcp_A           92 SEVDLCRKYDINFVPRLFFFYPRD  115 (470)
T ss_dssp             TCHHHHHHTTCCSSCEEEEEEESS
T ss_pred             CCHHHHHHcCCCccCeEEEEECCC
Confidence            999999999999999999998764

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.42  E-value=8.1e-13  Score=127.07  Aligned_cols=109  Identities=11%  Similarity=0.148  Sum_probs=90.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|.++++++|++++  .+.  +..++|.|||+    ||++ |+++.|+++++|+.+..        .+++.|+++|.++
T Consensus       249 ~~v~~l~~~~f~~~~--~~~--~k~~lv~f~a~----wC~~-C~~~~p~~~~la~~~~~--------~~~v~~~~vd~~~  311 (361)
T 3uem_A          249 QPVKVLVGKNFEDVA--FDE--KKNVFVEFYAP----WCGH-CKQLAPIWDKLGETYKD--------HENIVIAKMDSTA  311 (361)
T ss_dssp             SSSEEECTTTHHHHH--TCT--TCEEEEEEECT----TCHH-HHHHHHHHHHHHHHTTT--------CSSEEEEEEETTT
T ss_pred             CCcEEeecCchhhhc--ccC--CCcEEEEEecC----cCHh-HHHHHHHHHHHHHHhcc--------CCcEEEEEEECCc
Confidence            459999999999997  233  44799999999    8999 89999999999998732        2479999999998


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +.  +++++|+++|++++|+++.+..      ...+.|.++.++|.+||++..+
T Consensus       312 ~~--~~~~~v~~~Pt~~~~~~~~~~~------~~~~~G~~~~~~l~~~l~~~~~  357 (361)
T 3uem_A          312 NE--VEAVKVHSFPTLKFFPASADRT------VIDYNGERTLDGFKKFLESGGQ  357 (361)
T ss_dssp             CB--CSSCCCCSSSEEEEECSSSSCC------CEECCSCSSHHHHHHHHTTTSC
T ss_pred             cc--hhhcCCcccCeEEEEECCCCcc------eeEecCCCCHHHHHHHHHhcCC
Confidence            77  6889999999999998763332      2566788999999999988754

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.41  E-value=7.6e-13  Score=107.74  Aligned_cols=105  Identities=10%  Similarity=0.046  Sum_probs=85.0

Q ss_pred             CCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+.++++ ++|++.+   +.  +..++|.|+|+    ||++ |+++.|.++++++.+..         .++.|+.+|++
T Consensus        15 ~~~~~i~~~~~f~~~l---~~--~k~vvv~f~a~----~C~~-C~~~~~~l~~l~~~~~~---------~~v~~~~vd~d   75 (121)
T 2j23_A           15 GSVQVISSYDQFKQVT---GG--DKVVVIDFWAT----WCGP-CKMIGPVFEKISDTPAG---------DKVGFYKVDVD   75 (121)
T ss_dssp             CCEEECCSHHHHHHHH---SS--SSCEEEEEECT----TCST-HHHHHHHHHHHHTSTHH---------HHSEEEEEETT
T ss_pred             cceEEcCCHHHHHHHH---cC--CCEEEEEEECC----CCHh-HHHHHHHHHHHHHHCcC---------CcEEEEEEECc
Confidence            35888888 8999987   33  34689999998    8999 89999999999987632         14999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++.++++++++|++++|+.  |+..      ..+.+. +.+++.+||++.+
T Consensus        76 ~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           76 EQSQIAQEVGIRAMPTFVFFKN--GQKI------DTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             TCHHHHHHHTCCSSSEEEEEET--TEEE------EEEESS-CHHHHHHHHHHHT
T ss_pred             CCHHHHHHcCCCcccEEEEEEC--CeEE------eeEcCC-CHHHHHHHHHHhh
Confidence            9999999999999999999974  3332      333444 7899999998764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.40  E-value=1.2e-12  Score=110.41  Aligned_cols=120  Identities=9%  Similarity=0.037  Sum_probs=84.1

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA  131 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~  131 (347)
                      ++++|++.+  .+ ..+..++|.|||+    ||++ |+++.|.++++++.+          ++++.|+++|+++++++.+
T Consensus        10 ~~~~~~~~v--~~-~~~k~vlv~F~a~----wC~~-C~~~~p~l~~l~~~~----------~~~v~~~~vd~d~~~~~~~   71 (142)
T 1qgv_A           10 NGWQVDQAI--LS-EEDRVVVIRFGHD----WDPT-CMKMDEVLYSIAEKV----------KNFAVIYLVDITEVPDFNK   71 (142)
T ss_dssp             SHHHHHHHH--HT-CSSSEEEEEEECT----TSHH-HHHHHHHHHHHHHHH----------TTTEEEEEEETTTCCTTTT
T ss_pred             CHHHHHHHH--Hh-cCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHh----------CCCeEEEEEccccCHHHHH
Confidence            468898766  22 1245799999999    8999 899999999999887          2369999999999999999


Q ss_pred             HcCCCCCceEEEEcCCCCCCCCc-cc--ccccccccc-CHHHHHHHHHhhc-----CCCCCcccCCCCchh
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKDD-SV--QMEQGDFAR-MAESMADFVQSRT-----KLTVGPIHHPPLLSK  193 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~~-~~--~~~~~~~~~-~a~~l~~fi~~~t-----~~~i~~i~~p~~~~~  193 (347)
                      +|+|+++||+++|..|  +.... ..  ...+..+.. +.+++.++|++..     |..  -+.-|-+|+.
T Consensus        72 ~~~i~~~Pt~~~~~~G--~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~~~~  138 (142)
T 1qgv_A           72 MYELYDPCTVMFFFRN--KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRG--LVVSPKDYST  138 (142)
T ss_dssp             SSCSCSSCEEEEEETT--EEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTTCS--EEECCCCCC-
T ss_pred             HcCCCCCCEEEEEECC--cEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHhcCCe--EEeCCCCccc
Confidence            9999999999999754  32100 00  001122333 4788888887543     222  3455666654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.40  E-value=2.2e-13  Score=110.12  Aligned_cols=104  Identities=12%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-  123 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-  123 (347)
                      -+++..++.++|++.+   +..  ..++|.|||+    ||++ |+++.|.++++++.+          +.++.++.+|- 
T Consensus        11 ~~~~~~~~~~~~~~~~---~~~--~~~~v~f~a~----wC~~-C~~~~p~l~~~~~~~----------~~~v~~~~~~~~   70 (118)
T 1zma_A           11 IKDLEVTTVVRAQEAL---DKK--ETATFFIGRK----TCPY-CRKFAGTLSGVVAET----------KAHIYFINSEEP   70 (118)
T ss_dssp             TTTSEECCHHHHHHHH---HTT--CCEEEEEECT----TCHH-HHHHHHHHHHHHHHH----------CCCCEEEETTCG
T ss_pred             HhhhhcCCHHHHHHHH---hCC--CeEEEEEECC----CCcc-HHHHHHHHHHHHHhc----------CCeEEEEECCCc
Confidence            3578999999999987   322  2689999999    8999 899999999999875          13566653332 


Q ss_pred             ---cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          124 ---KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       124 ---~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                         ++.+++.++++++++|++++|+.  |+..      .++.|..+.+++.+||++
T Consensus        71 ~~~~~~~~~~~~~~i~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~k  118 (118)
T 1zma_A           71 SQLNDLQAFRSRYGIPTVPGFVHITD--GQIN------VRCDSSMSAQEIKDFAGL  118 (118)
T ss_dssp             GGHHHHHHHHHHHTCCSSCEEEEEET--TEEE------EECCTTCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHcCCCCCCeEEEEEC--CEEE------EEecCCCCHHHHHHHhhC
Confidence               23357889999999999999975  3332      445667889999999853

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.40  E-value=3.1e-13  Score=112.16  Aligned_cols=111  Identities=10%  Similarity=0.075  Sum_probs=87.1

Q ss_pred             CCCCeEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           44 SEAGVIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        44 s~~~VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      +++++++++ +++|++.+. ....++..++|.|||+    ||++ |+++.|+++++++.+           +++.|+.+|
T Consensus        22 ~~~~~~~i~~~~~~~~~~~-~~~~~~k~vvv~f~a~----wC~~-C~~~~~~l~~l~~~~-----------~~v~~~~v~   84 (139)
T 3d22_A           22 AGGNVHLITTKERWDQKLS-EASRDGKIVLANFSAR----WCGP-SRQIAPYYIELSENY-----------PSLMFLVID   84 (139)
T ss_dssp             SCTTCEEECSHHHHHHHHH-HHHHHTCCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEE
T ss_pred             cCCcEEEeCCHHHHHHHHH-HHhhcCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHC-----------CCCEEEEEe
Confidence            345688886 689999872 1111244799999998    8999 899999999999875           258999999


Q ss_pred             ccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          123 FKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       123 ~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      +++++++.++|+++++|++++++.  |+..      ..+.|. +.+++.++|++.++.
T Consensus        85 ~~~~~~~~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A           85 VDELSDFSASWEIKATPTFFFLRD--GQQV------DKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             TTTSHHHHHHTTCCEESEEEEEET--TEEE------EEEESC-CHHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHcCCCcccEEEEEcC--CeEE------EEEeCC-CHHHHHHHHHHHhcc
Confidence            999999999999999999999954  4432      233444 788999999987763

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.39  E-value=7.5e-13  Score=105.97  Aligned_cols=102  Identities=4%  Similarity=0.027  Sum_probs=80.8

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      +..+|+++| +.+   ..  +..++|.|||+    ||++ |+.+.|.++++++.+           +++.|+++|+++++
T Consensus         5 ~~~~~~~~f-~~~---~~--~~~~vv~f~a~----wC~~-C~~~~~~l~~~~~~~-----------~~v~~~~vd~~~~~   62 (110)
T 2l6c_A            5 RDITTEAGM-AHF---EG--LSDAIVFFHKN----LCPH-CKNMEKVLDKFGARA-----------PQVAISSVDSEARP   62 (110)
T ss_dssp             SBCGGGCSH-HHH---TT--CSEEEEEEECS----SCST-HHHHHHHHHHHHTTC-----------TTSCEEEEEGGGCH
T ss_pred             eecCCHHHH-HHH---Hc--CCCEEEEEECC----CCHh-HHHHHHHHHHHHHHC-----------CCcEEEEEcCcCCH
Confidence            456788999 444   22  23689999999    8999 899999999988754           25899999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++.++++++++|++++|+.  |+..      .++.|..+.++|.+++++..+
T Consensus        63 ~l~~~~~v~~~Pt~~~~~~--G~~v------~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           63 ELMKELGFERVPTLVFIRD--GKVA------KVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             HHHHHTTCCSSCEEEEEES--SSEE------EEEESCCCHHHHHHHHHTC--
T ss_pred             HHHHHcCCcccCEEEEEEC--CEEE------EEEcCCCCHHHHHHHHHHHhh
Confidence            9999999999999999964  3432      344566789999999987654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.38  E-value=1e-12  Score=107.87  Aligned_cols=86  Identities=16%  Similarity=0.269  Sum_probs=74.0

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      +..++|.|||+    ||++ |+++.|+++++++.+.          +++.|+.+|+++++++.++|+++++|++++|+. 
T Consensus        42 ~k~vlv~F~a~----wC~~-C~~~~p~l~~~~~~~~----------~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~-  105 (128)
T 3ul3_B           42 NTVIVLYFFAK----WCQA-CTMQSTEMDKLQKYYG----------KRIYLLKVDLDKNESLARKFSVKSLPTIILLKN-  105 (128)
T ss_dssp             CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHG----------GGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEET-
T ss_pred             CCEEEEEEECC----CCHH-HHHHhHHHHHHHHHhc----------CCeEEEEEECCCCHHHHHHcCCCCcCEEEEEEC-
Confidence            45799999999    8999 8999999999999873          369999999999999999999999999999964 


Q ss_pred             CCCCCCccccccccccccCHHHHHHHHHh
Q 048343          148 AKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                       |+..      .++.|..+.+++.+||++
T Consensus       106 -G~~~------~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          106 -KTML------ARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             -TEEE------EEESSCCCHHHHHHHHTT
T ss_pred             -CEEE------EEecCCCCHHHHHHHHHh
Confidence             3332      445667889999999875

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.38  E-value=1.2e-12  Score=138.41  Aligned_cols=109  Identities=16%  Similarity=0.144  Sum_probs=86.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|++||++||++.+   +.  +..++|.|+|+    ||++ |+++.|+|+++|+.+.          +++.|++||+++
T Consensus       116 ~~v~~l~~~~f~~~i---~~--~~~~lv~Fya~----wC~~-C~~~~p~~~~~a~~~~----------~~v~~~~vd~~~  175 (780)
T 3apo_A          116 PEIITLERREFDAAV---NS--GELWFVNFYSP----GSSH-SHDLAPTWREFAKEVD----------GLLRIGAVNCGD  175 (780)
T ss_dssp             TTEEECCHHHHHHHH---TS--SSCEEEEEECS----SCHH-HHHHHHHHHHHHHHTT----------TTSEEEEEETTT
T ss_pred             cceeeechHhHHhhh---cC--CCcEEEEEeCC----CCcc-hhHhhHHHHHHHHHhc----------CceEEEEEeCCC
Confidence            469999999999998   33  34799999999    8999 8999999999999872          359999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++++++++|+++||+++|++|  ...      ..+.|.+++++|.+|+.+.++..+
T Consensus       176 ~~~l~~~~~v~~~Pt~~~~~~g--~~~------~~~~G~~~~~~l~~~l~~~~~~~~  224 (780)
T 3apo_A          176 DRMLCRMKGVNSYPSLFIFRSG--MAA------VKYNGDRSKESLVAFAMQHVRSTV  224 (780)
T ss_dssp             CSSCC--------CEEEEECTT--SCC------EECCSCSCHHHHHHHHHTTSCCCE
T ss_pred             cHHHHHHcCCceeeeEEEEeCC--cEe------eEecCCCCHHHHHHHHHHhchhhh
Confidence            9999999999999999999864  322      456788999999999999988654

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.06  E-value=5e-14  Score=110.12  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=83.3

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      ++++|+++|++.+  .+.  +..++|.|+++    ||++ |+.+.|.++++++.+          ++++.|+.+|.++++
T Consensus         3 v~~l~~~~~~~~~--~~~--~~~~~v~f~~~----~C~~-C~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~   63 (106)
T 2yj7_A            3 VIEVTDENFEQEV--LKS--DKPVLVDFWAP----WCGP-CRMIAPIIEELAKEY----------EGKVKVVKVNVDENP   63 (106)
Confidence            7889999999775  232  34689999998    8999 899999999999876          236999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++++++++++|++++|+.  |+..      ..+.+..+.+++.+|+++.
T Consensus        64 ~~~~~~~v~~~Pt~~~~~~--g~~~------~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           64 NTAAQYGIRSIPTLLLFKN--GQVV------DRLVGAQPKEALKERIDKH  105 (106)
Confidence            9999999999999999954  3432      3445566788888888764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.36  E-value=3.1e-12  Score=104.60  Aligned_cols=107  Identities=9%  Similarity=0.036  Sum_probs=83.0

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecC---CCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAH---QLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~---~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .+...+.++|++.+   ...++..++|.|||+   +.+.||++ |+.+.|.++++++.+          .+++.|+++|+
T Consensus         6 ~v~~~~~~~~~~~~---~~~~~~~v~v~F~a~~~~~~~~wC~~-C~~~~p~l~~~~~~~----------~~~~~~~~vd~   71 (123)
T 1wou_A            6 EVSVSGFEEFHRAV---EQHNGKTIFAYFTGSKDAGGKSWCPD-CVQAEPVVREGLKHI----------SEGCVFIYCQV   71 (123)
T ss_dssp             EEEEESHHHHHHHH---HTTTTSEEEEEEECCBCTTCCBSCHH-HHHHHHHHHHHGGGC----------CTTEEEEEEEC
T ss_pred             eEEeccHHHHHHHH---HHhCCCEEEEEEEccCCCCCCCcCHH-HHHhhHHHHHHHHHc----------CCCcEEEEEEC
Confidence            46677889999988   332356899999998   34458999 899999999988765          23699999999


Q ss_pred             -------cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          124 -------KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       124 -------~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                             ++++++.++++++++||+++|.++  ..      ..... +.+.+.+.+||++
T Consensus        72 ~~~~~~~d~~~~~~~~~~i~~~Pt~~~~~~~--~~------~~g~~-~~~~~~l~~~i~~  122 (123)
T 1wou_A           72 GEKPYWKDPNNDFRKNLKVTAVPTLLKYGTP--QK------LVESE-CLQANLVEMLFSE  122 (123)
T ss_dssp             CCHHHHHCTTCHHHHHHCCCSSSEEEETTSS--CE------EEGGG-GGCHHHHHHHHHC
T ss_pred             CCchhhhchhHHHHHHCCCCeeCEEEEEcCC--ce------Eeccc-cCCHHHHHHHHhc
Confidence                   788899999999999999999862  21      11112 3567888888864

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.35  E-value=3.1e-12  Score=114.59  Aligned_cols=109  Identities=12%  Similarity=-0.023  Sum_probs=87.8

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      ++.++++++++++.   +.. ...++|.|||+    ||++ |+++.|.++++|+.+...      ..+++.|+++|++++
T Consensus       117 ~~~~l~~~~~~~~~---~~~-~~~~~v~F~a~----wC~~-C~~~~p~~~~l~~~~~~~------~~~~v~~~~vd~~~~  181 (226)
T 1a8l_A          117 EETNLMDETKQAIR---NID-QDVRILVFVTP----TCPY-CPLAVRMAHKFAIENTKA------GKGKILGDMVEAIEY  181 (226)
T ss_dssp             TCCCCCHHHHHHHT---TCC-SCEEEEEEECS----SCTT-HHHHHHHHHHHHHHHHHT------TCCCEEEEEEEGGGC
T ss_pred             CCCCCCHHHHHHHH---hcC-CCcEEEEEeCC----CCCc-cHHHHHHHHHHHHhcccc------cCCcEEEEEEEcccC
Confidence            46789999999985   322 22348999999    8999 899999999999987421      124799999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++.++|+|+++|++++|+.  |+..      ..+.|..+.+++.+||++.+
T Consensus       182 ~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          182 PEWADQYNVMAVPKIVIQVN--GEDR------VEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHHHTTCCSSCEEEEEET--TEEE------EEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCeEEEEeC--Ccee------EEEcCCCCHHHHHHHHHHhh
Confidence            99999999999999999975  3322      34567788899999998764

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.35  E-value=5.1e-12  Score=128.41  Aligned_cols=117  Identities=10%  Similarity=0.031  Sum_probs=92.9

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++.|+++|+++|++.+  .++  +..++|.|||+    ||++ |+++.|+++++|+.+...       ++++.|+++|++
T Consensus        11 ~~~V~~Lt~~~f~~~v--~~~--~k~vlV~FyA~----WC~p-Ck~~~P~l~~la~~~~~~-------~~~v~~~~VD~d   74 (519)
T 3t58_A           11 SDPLTLLDADSVRPTV--LGS--SSAWAVEFFAS----WCGH-AIAFAPTWKELANDVKDW-------RPALNLAVLDCA   74 (519)
T ss_dssp             TSSSEEECTTTHHHHH--SSC--SSEEEEEEECT----TSHH-HHHHHHHHHHHHHHHGGG-------TTTEEEEEEETT
T ss_pred             CCCcEECChHHHHHHH--HhC--CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHhhCc-------CCcEEEEEEECC
Confidence            4579999999999987  232  34799999999    8999 899999999999998532       347999999996


Q ss_pred             C--CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          125 E--SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       125 ~--~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +  +++++++|+|+++|++++|+++. +..   .....+.++.+.+++.++|.+.+..+
T Consensus        75 ~d~~~~l~~~~~V~~~PTl~~f~~g~-~~G---~~~~~~~g~~~~~~L~~~l~~~l~~~  129 (519)
T 3t58_A           75 EETNSAVCREFNIAGFPTVRFFQAFT-KNG---SGATLPGAGANVQTLRMRLIDALESH  129 (519)
T ss_dssp             SGGGHHHHHHTTCCSBSEEEEECTTC-CSC---CCEEECCSSCCHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHcCCcccCEEEEEcCcc-cCC---CceeEecCCCCHHHHHHHHHHHHhhc
Confidence            4  78999999999999999999752 111   11123345688999999999887753

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.35  E-value=2.1e-12  Score=104.35  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=79.5

Q ss_pred             CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .+.++++ ++|++.+   +.  +..++|.|||+    ||++ |+++.|.++++++.+          . ++.|+.+|+++
T Consensus        13 ~~~~~~~~~~~~~~~---~~--~k~vvv~F~a~----wC~~-C~~~~p~l~~~~~~~----------~-~v~~~~vd~~~   71 (114)
T 2oe3_A           13 SITKLTNLTEFRNLI---KQ--NDKLVIDFYAT----WCGP-CKMMQPHLTKLIQAY----------P-DVRFVKCDVDE   71 (114)
T ss_dssp             GSCBCCSHHHHHHHH---HH--CSEEEEEEECT----TCHH-HHHTHHHHHHHHHHC----------T-TSEEEEEETTT
T ss_pred             heeecCCHHHHHHHH---hC--CCEEEEEEECC----CCHH-HHHHHHHHHHHHHHC----------C-CCEEEEEECCC
Confidence            4677776 5677776   32  33799999998    8999 899999999999876          1 28999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      ++++.++++++++|++++|+.  |+..      ..+.|.. .+++.++|++
T Consensus        72 ~~~l~~~~~v~~~Pt~~~~~~--G~~~------~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           72 SPDIAKECEVTAMPTFVLGKD--GQLI------GKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             CHHHHHHTTCCSBSEEEEEET--TEEE------EEEESSC-HHHHHHHHHT
T ss_pred             CHHHHHHCCCCcccEEEEEeC--CeEE------EEEeCCC-HHHHHHHHHh
Confidence            999999999999999999964  3332      3344545 8899999875

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.34  E-value=1.5e-12  Score=117.97  Aligned_cols=110  Identities=13%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .|+++ +.++|++.+.  +..++..++|.|||+    ||++ |+.+.|.++++|+.|           .++.|+++|++ 
T Consensus       100 ~v~~i~~~~~f~~~v~--~~~~~k~vvV~F~a~----wC~~-C~~l~p~l~~la~~~-----------~~v~f~~vd~~-  160 (217)
T 2trc_P          100 FVYELETGEQFLETIE--KEQKVTTIVVNIYED----GVRG-CDALNSSLECLAAEY-----------PMVKFCKIRAS-  160 (217)
T ss_dssp             SEEECCSHHHHHHHHH--HSCTTCEEEEEEECT----TSTT-HHHHHHHHHHHHTTC-----------TTSEEEEEEHH-
T ss_pred             eEEEcCCHHHHHHHHH--hcCCCcEEEEEEECC----CCcc-HHHHHHHHHHHHHHC-----------CCeEEEEEECC-
Confidence            48999 8899999883  333456899999999    8999 899999999999765           25899999999 


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccc-cccccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQ-GDFARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~-~~~~~~a~~l~~fi~~~  177 (347)
                      ++++.++|+++++||+++|+.  |+.......+.. .....+.++|.+||.+.
T Consensus       161 ~~~l~~~~~i~~~PTl~~~~~--G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          161 NTGAGDRFSSDVLPTLLVYKG--GELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             HHTCSTTSCGGGCSEEEEEET--TEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             cHHHHHHCCCCCCCEEEEEEC--CEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            778999999999999999985  333200000000 01124468999999875

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.33  E-value=8.5e-12  Score=124.56  Aligned_cols=113  Identities=12%  Similarity=0.139  Sum_probs=93.9

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.+..+++++|++++  .+.  +..++|.|||+    ||++ |+++.|.++++|+.+..        .+++.|+++|.++
T Consensus       352 ~~v~~~~~~~~~~~~--~~~--~k~vlv~f~a~----wC~~-C~~~~p~~~~l~~~~~~--------~~~v~~~~id~~~  414 (481)
T 3f8u_A          352 GPVKVVVAENFDEIV--NNE--NKDVLIEFYAP----WCGH-CKNLEPKYKELGEKLSK--------DPNIVIAKMDATA  414 (481)
T ss_dssp             SSSEEECTTTHHHHH--TCT--TCEEEEEEECT----TBHH-HHHHHHHHHHHHHHTTT--------CSSEEEEEEETTS
T ss_pred             CCeEEecccCHHHHh--hcC--CCcEEEEEecC----cChh-HHHhhHHHHHHHHHhcc--------CCCEEEEEEECCc
Confidence            458899999999998  232  44799999999    8999 89999999999998732        2479999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      + ++.++++++++||+++|+++ +..     ....+.|.++.+++.+||+++.+...
T Consensus       415 ~-~~~~~~~v~~~Pt~~~~~~~-~~~-----~~~~~~G~~~~~~l~~~l~~~~~~~~  464 (481)
T 3f8u_A          415 N-DVPSPYEVRGFPTIYFSPAN-KKL-----NPKKYEGGRELSDFISYLQREATNPP  464 (481)
T ss_dssp             S-CCCTTCCCCSSSEEEEECTT-CTT-----SCEECCSCCSHHHHHHHHHHHCSSCC
T ss_pred             h-hhHhhCCCcccCEEEEEeCC-CeE-----eeeEeCCCCCHHHHHHHHHHhcCCcc
Confidence            8 88899999999999999975 231     12556778999999999999987654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.31  E-value=6.3e-12  Score=115.99  Aligned_cols=108  Identities=12%  Similarity=0.143  Sum_probs=84.6

Q ss_pred             CeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .|+++ +.++|.+.+.  +..++..+||.|||+    ||++ |+.+.|.++++|+.|           ..+.|+++|+++
T Consensus       113 ~V~ei~s~~~f~~~v~--~~~~~k~VvV~Fya~----wC~~-Ck~l~p~l~~La~~~-----------~~v~f~kVd~d~  174 (245)
T 1a0r_P          113 FVYELESGEQFLETIE--KEQKITTIVVHIYED----GIKG-CDALNSSLICLAAEY-----------PMVKFCKIKASN  174 (245)
T ss_dssp             SEEECCSHHHHHHHHH--SSCTTCEEEEEEECT----TSTT-HHHHHHHHHHHHHHC-----------TTSEEEEEEHHH
T ss_pred             eEEEeCCHHHHHHHHH--HhcCCCEEEEEEECC----CChH-HHHHHHHHHHHHHHC-----------CCCEEEEEeCCc
Confidence            48999 7899999882  333456899999999    8999 899999999999876           148999999988


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCcccccccc----ccccCHHHHHHHHHhhc
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQG----DFARMAESMADFVQSRT  178 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~----~~~~~a~~l~~fi~~~t  178 (347)
                       +++.++|+++++||+++|+.  |...   .++..+    ...++.++|.+||.+..
T Consensus       175 -~~l~~~~~I~~~PTll~~~~--G~~v---~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          175 -TGAGDRFSSDVLPTLLVYKG--GELL---SNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             -HCCTTSSCTTTCSEEEEEET--TEEE---EEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             -HHHHHHCCCCCCCEEEEEEC--CEEE---EEEeCCcccccccccHHHHHHHHHHcC
Confidence             77899999999999999985  4432   111111    11257889999998863

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.30  E-value=6e-12  Score=102.12  Aligned_cols=109  Identities=13%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             CCeEEc--ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           46 AGVIHL--NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        46 ~~VI~L--~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +.++++  +.++|++.+.  +.  +..++|.|||+    ||++ |+.+.|+++++++.+           +++.|+.+|+
T Consensus         3 ~~v~~~~g~~~~~~~~~~--~~--~~~vlv~f~a~----wC~~-C~~~~~~l~~l~~~~-----------~~v~~~~vd~   62 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIK--EA--PGLVLVDFFAT----WCGP-CQRLGQILPSIAEAN-----------KDVTFIKVDV   62 (118)
T ss_dssp             CCSEEECSCHHHHHHHHH--HC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEET
T ss_pred             CcceEecCCHHHHHHHHH--hC--CCEEEEEEECC----CCHH-HHHHHHHHHHHHHHC-----------CCeEEEEEEC
Confidence            458888  5789986541  22  33699999999    8999 899999999999876           2589999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++++.++|+++++|++++|.++ |+..   ....+..| ...+++.+.+.+...
T Consensus        63 ~~~~~~~~~~~i~~~Pt~~~~~~~-~~~G---~~~~~~~G-~~~~~l~~~~~~~~~  113 (118)
T 2f51_A           63 DKNGNAADAYGVSSIPALFFVKKE-GNEI---KTLDQFVG-ADVSRIKADIEKFKH  113 (118)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEEEE-TTEE---EEEEEEES-CCHHHHHHHHHHHC-
T ss_pred             CCCHHHHHhcCCCCCCEEEEEeCC-CCcc---eEEEeecC-CCHHHHHHHHHHhhh
Confidence            999999999999999999999752 1110   12233333 446678888887654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.30  E-value=2.4e-11  Score=128.51  Aligned_cols=114  Identities=16%  Similarity=0.103  Sum_probs=95.2

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..|.+|++++|++++  .+.+++..++|.|+|+    ||++ |+++.|+|+++|+.+.          +++.|+++|.++
T Consensus       543 ~~v~~l~~~~f~~~v--~~~~~~~~~lv~F~ap----~C~~-c~~~~p~~~~lA~~~~----------~~v~~~~vd~~~  605 (780)
T 3apo_A          543 PSVVSLTPSTFNELV--KQRKHDEVWMVDFYSP----WSHP-SQVLMPEWKRMARTLT----------GLINVGSVDCGQ  605 (780)
T ss_dssp             CSEEECCHHHHHHHT--TTCCTTCCEEEEEECT----TCHH-HHHHHHHHHHHHHHHT----------TTSEEEEEETTT
T ss_pred             cceeecCcccHHHHh--hccCCCCeEEEEEECC----CCHH-HHHhhHHHHHHHHHhh----------CCeEEEEEECcc
Confidence            579999999999998  3444566789999998    8999 8999999999999872          369999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~~~t~~  180 (347)
                      ++.++++++++++|++.+|+++. ...   ..+..|++ .++.++|.+|+.+.+..
T Consensus       606 ~~~l~~~~~v~~~Pti~~~~~~~-~~~---~~~~~y~g~~~~~~~l~~fi~~~~~~  657 (780)
T 3apo_A          606 YHSFCTQENVQRYPEIRFYPQKS-SKA---YQYHSYNGWNRDAYSLRSWGLGFLPQ  657 (780)
T ss_dssp             THHHHHHTTCCSSSEEEEECCCS-SSC---CSCEECCCSCCSHHHHHHHHHTTSCC
T ss_pred             hHHHHHHcCCCCCCeEEEEcCCC-cCc---cchhhcCCCCCCHHHHHHHHhhhccc
Confidence            99999999999999999999753 210   12345677 78999999999988754

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=2.1e-12  Score=105.64  Aligned_cols=112  Identities=13%  Similarity=0.045  Sum_probs=85.6

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      ..+++++++|++.+. ....++..++|.|+|+    ||++ |+++.|++   +.+++.+.          +++.++.+|.
T Consensus         7 ~~~~~~~~~~~~~~~-~~~~~~k~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~~~~~----------~~~~~~~vd~   70 (130)
T 2kuc_A            7 DGIAFRELSFPEALK-RAEVEDKLLFVDCFTT----WCGP-CKRLSKVVFKDSLVADYFN----------RHFVNLKMDM   70 (130)
T ss_dssp             CCCCCBCCCHHHHHH-HHHHHSSCEEEEECCT----TCTH-HHHHHHHGGGCHHHHHHHH----------HHSEEEEECS
T ss_pred             CCCCcccCCHHHHHH-HHHhcCCeEEEEEECC----CCcc-HHHHHHHhcCcHHHHHHHh----------cCeEEEEEec
Confidence            357889999988762 1111234699999998    8999 89999999   77776542          2578999999


Q ss_pred             c--CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          124 K--ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       124 ~--~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +  +++++.++|+++++|++++|.++ |+..      ..+.|..+.+++.++|++..+.+
T Consensus        71 ~~~~~~~~~~~~~v~~~Pt~~~~d~~-G~~~------~~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           71 EKGEGVELRKKYGVHAYPTLLFINSS-GEVV------YRLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             SSTTHHHHHHHTTCCSSCEEEEECTT-SCEE------EEEESCCCHHHHHHHHHHHHSCC
T ss_pred             CCcchHHHHHHcCCCCCCEEEEECCC-CcEE------EEecCCCCHHHHHHHHHHHHHhc
Confidence            8  46789999999999999999653 4432      34456678999999999987754

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.29  E-value=1.6e-11  Score=123.48  Aligned_cols=113  Identities=14%  Similarity=0.222  Sum_probs=90.8

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|.++++++|++.+  .+.  +..++|.|||+    ||++ |+.+.|+++++|+.+..+       ..++.|+++|.++
T Consensus       358 ~~v~~l~~~~f~~~v--~~~--~k~vlv~F~a~----wC~~-C~~~~p~~~~l~~~~~~~-------~~~v~~~~vd~~~  421 (504)
T 2b5e_A          358 SSVFQLVGKNHDEIV--NDP--KKDVLVLYYAP----WCGH-CKRLAPTYQELADTYANA-------TSDVLIAKLDHTE  421 (504)
T ss_dssp             CSEEEECTTTHHHHH--HCT--TCCEEEEEECT----TCHH-HHHHHHHHHHHHHHHHHH-------CSSCEEEEEEGGG
T ss_pred             ccceecccccHHHhh--ccC--CCCEEEEEECC----CChh-HHHHhHHHHHHHHHhhcc-------CCcEEEEEecCCc
Confidence            469999999999987  232  34699999999    8999 899999999999988522       2479999999998


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +... + ++++++||+++|+.|  +.    .....+.|.++.+++.+||++..+..+
T Consensus       422 ~~~~-~-~~v~~~Pt~~~~~~G--~~----~~~~~~~G~~~~~~l~~~i~~~~~~~~  470 (504)
T 2b5e_A          422 NDVR-G-VVIEGYPTIVLYPGG--KK----SESVVYQGSRSLDSLFDFIKENGHFDV  470 (504)
T ss_dssp             CCCS-S-CCCSSSSEEEEECCT--TS----CCCCBCCSCCCHHHHHHHHHHHCTTCC
T ss_pred             cccc-c-CCceecCeEEEEeCC--ce----ecceEecCCCCHHHHHHHHHhcCCCCC
Confidence            7654 4 999999999999754  22    112456778899999999999877544

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.28  E-value=1.6e-12  Score=106.05  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             CCCeEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           45 EAGVIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        45 ~~~VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      +..+++++ .++|++.+.. ...++..++|.||++    ||++ |+++.|.++++++.+           .++.|+.+|+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~-~~~~~~~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~-----------~~v~~~~v~~   75 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTK-AKEAGKVVIIDFTAS----WCGP-CRFIAPVFAEYAKKF-----------PGAVFLKVDV   75 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHH-HHTTTCBCBEECCSS----SCSC-SSSSHHHHHHHHHHC-----------TTBCCEECCT
T ss_pred             CcceEEcCCHHHHHHHHHH-HhhcCCEEEEEEECC----CChh-HHHHHHHHHHHHHHC-----------CCCEEEEEec
Confidence            34689995 5899998731 111244789999998    8999 899999999999875           1589999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++++.++|+++++|++++|+.  |+..      ..+.+ .+.+++.++|++.++.
T Consensus        76 ~~~~~~~~~~~v~~~Pt~~~~~~--g~~~------~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           76 DELKEVAEKYNVEAMPTFLFIKD--GAEA------DKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             TTSGGGHHHHTCCSSCCCCBCTT--TTCC------BCCCT-TCTTTHHHHHHHHTSS
T ss_pred             cchHHHHHHcCCCccceEEEEeC--CeEE------EEEeC-CCHHHHHHHHHHHHhc
Confidence            99999999999999999999964  3432      22333 4667899999988764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.26  E-value=1.7e-11  Score=92.45  Aligned_cols=81  Identities=12%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAK  149 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g  149 (347)
                      ..++.|+++    ||++ |+++.|.++++++.+          ++++.|..+|+++++++.++++++++|++++  .  |
T Consensus         4 ~~vv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~--G   64 (85)
T 1fo5_A            4 VKIELFTSP----MCPH-CPAAKRVVEEVANEM----------PDAVEVEYINVMENPQKAMEYGIMAVPTIVI--N--G   64 (85)
T ss_dssp             EEEEEEECC----CSSC-CCTHHHHHHHHHHHC----------SSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--T--T
T ss_pred             eEEEEEeCC----CCCc-hHHHHHHHHHHHHHc----------CCceEEEEEECCCCHHHHHHCCCcccCEEEE--C--C
Confidence            468899998    8999 899999999999876          2469999999999999999999999999999  3  3


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhh
Q 048343          150 SLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       150 ~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +.        .+.|..+.+++.++|++.
T Consensus        65 ~~--------~~~G~~~~~~l~~~l~~~   84 (85)
T 1fo5_A           65 DV--------EFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             EE--------ECCSSSSSHHHHHHHHHH
T ss_pred             EE--------eeecCCCHHHHHHHHHHh
Confidence            21        234556788999999875

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.25  E-value=1.4e-11  Score=92.89  Aligned_cols=81  Identities=9%  Similarity=0.039  Sum_probs=67.8

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCC
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKS  150 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~  150 (347)
                      .++.|||+    ||++ |+++.|.++++++.+          ++++.|..+|+++++++.+++|++++|++++  .  |+
T Consensus         4 ~vv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~--G~   64 (85)
T 1nho_A            4 NIEVFTSP----TCPY-CPMAIEVVDEAKKEF----------GDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--N--GV   64 (85)
T ss_dssp             CEEEESCS----SSCC-STTHHHHHHHHHHHH----------CSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--T--TT
T ss_pred             EEEEEECC----CCcc-hHHHHHHHHHHHHHh----------cCCeEEEEEECCCCHHHHHhCCceeeCEEEE--C--CE
Confidence            57899998    8999 899999999999887          2368999999999999999999999999999  3  33


Q ss_pred             CCCccccccccccccCHHHHHHHHHhhc
Q 048343          151 LKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       151 ~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      .        .+.|..+.+++.++|++.+
T Consensus        65 ~--------~~~G~~~~~~l~~~l~~~l   84 (85)
T 1nho_A           65 V--------RFVGAPSREELFEAINDEM   84 (85)
T ss_dssp             E--------EEECSSCCHHHHHHHHHHC
T ss_pred             E--------EEccCCCHHHHHHHHHHHh
Confidence            1        2334557889999998764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.23  E-value=2.1e-11  Score=100.96  Aligned_cols=110  Identities=10%  Similarity=0.054  Sum_probs=80.8

Q ss_pred             eEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           48 VIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        48 VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      ..++ +.++++..+   +..++..++|.|||+    ||++ |+++.|.+   +++++.+          . ++.|+.+|+
T Consensus        13 f~~~~~~~~~~~~l---~~~~~k~vlv~F~a~----wC~~-C~~~~~~~~~~~~l~~~~----------~-~~~~~~vd~   73 (134)
T 2fwh_A           13 FTQIKTVDELNQAL---VEAKGKPVMLDLYAD----WCVA-CKEFEKYTFSDPQVQKAL----------A-DTVLLQANV   73 (134)
T ss_dssp             CEECCSHHHHHHHH---HHHTTSCEEEEEECT----TCHH-HHHHHHHTTTSHHHHHHT----------T-TSEEEEEEC
T ss_pred             cEEecCHHHHHHHH---HHhcCCcEEEEEECC----CCHH-HHHHHHHhcCCHHHHHHh----------c-CcEEEEEeC
Confidence            4434 457788776   222345799999998    8999 89999999   8888775          1 389999999


Q ss_pred             ----cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          124 ----KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       124 ----~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                          ++++++.++|+++++|++++|.++ |+..    ...++.|..+.++|.+++++..+.+
T Consensus        74 ~~~~~~~~~l~~~~~v~~~Pt~~~~d~~-G~~v----~~~~~~G~~~~~~l~~~l~~~~~~~  130 (134)
T 2fwh_A           74 TANDAQDVALLKHLNVLGLPTILFFDGQ-GQEH----PQARVTGFMDAETFSAHLRDRQPHH  130 (134)
T ss_dssp             TTCCHHHHHHHHHTTCCSSSEEEEECTT-SCBC----GGGCBCSCCCHHHHHHHHHHC----
T ss_pred             CCCcchHHHHHHHcCCCCCCEEEEECCC-CCEe----eeeeeeeccCHHHHHHHHHhcCccc
Confidence                456789999999999999999543 4431    0134566788999999999877654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.22  E-value=4.6e-11  Score=107.39  Aligned_cols=103  Identities=11%  Similarity=-0.008  Sum_probs=84.4

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..+.++++++|++++   +.. ...++|.|+|+    ||++ |+++.|.++++|+.+           +++.|+.+|+++
T Consensus       118 ~~~~~l~~~~~~~~~---~~~-~~~~~v~F~a~----wC~~-C~~~~~~~~~~~~~~-----------~~v~~~~vd~~~  177 (229)
T 2ywm_A          118 QRKPQLSEKTLELLQ---VVD-IPIEIWVFVTT----SCGY-CPSAAVMAWDFALAN-----------DYITSKVIDASE  177 (229)
T ss_dssp             TTCCSCCHHHHHHHT---TCC-SCEEEEEEECT----TCTT-HHHHHHHHHHHHHHC-----------TTEEEEEEEGGG
T ss_pred             CCccCCCHHHHHHHH---hcC-CCeEEEEEECC----CCcc-hHHHHHHHHHHHHHC-----------CCeEEEEEECCC
Confidence            458899999999986   322 22457889999    8999 899999999999875           269999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++.++|+|+++|++++  .  |+.       ..+.|..+.+++.+|+++.++
T Consensus       178 ~~~l~~~~~v~~~Pt~~~--~--G~~-------~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          178 NQDLAEQFQVVGVPKIVI--N--KGV-------AEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             CHHHHHHTTCCSSSEEEE--G--GGT-------EEEESCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCcccCEEEE--C--CEE-------EEeeCCCCHHHHHHHHHHHhh
Confidence            999999999999999998  2  331       335677889999999987654

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.14  E-value=9.4e-11  Score=95.23  Aligned_cols=99  Identities=9%  Similarity=0.057  Sum_probs=75.7

Q ss_pred             CCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++.++|++ ++|++++   +.  +..++|+|+|+    ||++ |+.+.|+|+++++.            +++.|+++|++
T Consensus         6 ~~~~~i~s~e~f~~ii---~~--~~~vvi~khat----wCgp-c~~~~~~~e~~~~~------------~~v~~~~vdVd   63 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVI---EE--NKYVFVLKHSE----TCPI-SANAYDQFNKFLYE------------RDMDGYYLIVQ   63 (112)
T ss_dssp             GCEEECCSHHHHHHHH---HH--CSEEEEEEECT----TCHH-HHHHHHHHHHHHHH------------HTCCEEEEEGG
T ss_pred             cceeecCCHHHHHHHH---hc--CCCEEEEEECC----cCHh-HHHHHHHHHHHhcc------------CCceEEEEEee
Confidence            46788854 6899988   32  44799999999    8999 89999999999873            15889999999


Q ss_pred             CCcc----hHhHcCCCC-CceEEEEcCCCCCCCCccccccccccccCHHHHHHH
Q 048343          125 ESQS----SFALFAVNS-LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADF  173 (347)
Q Consensus       125 ~~~~----lf~~~~I~s-vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~f  173 (347)
                      ++++    +++++||++ .|++++|+.|  +..   +  ....+..+.+++.+.
T Consensus        64 e~r~~Sn~IA~~~~V~h~sPq~il~k~G--~~v---~--~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           64 QERDLSDYIAKKTNVKHESPQAFYFVNG--EMV---W--NRDHGDINVSSLAQA  110 (112)
T ss_dssp             GGHHHHHHHHHHHTCCCCSSEEEEEETT--EEE---E--EEEGGGCSHHHHHHH
T ss_pred             cCchhhHHHHHHhCCccCCCeEEEEECC--EEE---E--EeeccccCHHHHHHh
Confidence            9875    899999996 9999999864  322   1  111234566666654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.14  E-value=6.4e-11  Score=97.32  Aligned_cols=89  Identities=11%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHH--HHHHHhhhcCCCCCCCCCceEEEEEEc---cCCcchHhHcCC---CCCc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFS--LVASSFIANNVDNPSSRGKLFFCYLEF---KESQSSFALFAV---NSLP  139 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe--~vA~s~~~~~p~~~~~~~~v~F~~vD~---~~~~~lf~~~~I---~svP  139 (347)
                      +..++|.|||+    ||++ |+.+.|.++  ++++.+.          +++.|+.+|+   ++++++.++|++   +++|
T Consensus        29 ~k~vlv~f~a~----wC~~-C~~~~~~l~~~~~~~~~~----------~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~P   93 (133)
T 3fk8_A           29 HKPTLLVFGAN----WCTD-CRALDKSLRNQKNTALIA----------KHFEVVKIDVGNFDRNLELSQAYGDPIQDGIP   93 (133)
T ss_dssp             TCCEEEEEECT----TCHH-HHHHHHHHTSHHHHHHHH----------HHCEEEEEECTTTTSSHHHHHHTTCGGGGCSS
T ss_pred             CCcEEEEEcCC----CCHH-HHHHHHHhCCHHHHHHhc----------CCEEEEEEeCCcccchHHHHHHhCCccCCccc
Confidence            34699999999    8999 899999999  9988773          3589999999   888999999999   9999


Q ss_pred             eEEEEcCCCCCCCCcccccccccc-------ccCHHHHHHHHHhhc
Q 048343          140 HIRLVGPDAKSLKDDSVQMEQGDF-------ARMAESMADFVQSRT  178 (347)
Q Consensus       140 ~l~~fpp~~g~~~~~~~~~~~~~~-------~~~a~~l~~fi~~~t  178 (347)
                      ++++|.++ |+..      ....+       ..+.+++.+|+++.+
T Consensus        94 t~~~~d~~-G~~~------~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           94 AVVVVNSD-GKVR------YTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EEEEECTT-SCEE------EECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             eEEEECCC-CCEE------EEecCCcccccccCCHHHHHHHHHHhc
Confidence            99999543 4432      11112       367899999998753

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.14  E-value=5.2e-11  Score=102.46  Aligned_cols=108  Identities=10%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+.+.++|++.+. ....++..++|.|||+    ||++ |+++++++   .++++.+.          +++.|+.+|++
T Consensus        28 ~~~~~~~~~~~~~~-~a~~~gk~vlv~F~A~----WC~~-C~~~~~~~~~~~~~~~~~~----------~~~~~v~v~~d   91 (172)
T 3f9u_A           28 EVHAKFDDYDLGME-YARQHNKPVMLDFTGY----GCVN-CRKMELAVWTDPKVSSIIN----------NDYVLITLYVD   91 (172)
T ss_dssp             CCCCCBSCHHHHHH-HHHHTTCCEEEEEECT----TCHH-HHHHHHHTTTSHHHHHHHH----------HHCEEEEEETT
T ss_pred             ccccchhhHHHHHH-HHHHcCCeEEEEEECC----CCHH-HHHHHHHhcCCHHHHHHhc----------CCEEEEEEecC
Confidence            45667778887762 1112345799999999    8999 79987776   67766552          25899999999


Q ss_pred             CCcch--------------------------HhHcCCCCCceEEEEcCCCCCCCCccccccccccccC-HHHHHHHHHhh
Q 048343          125 ESQSS--------------------------FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARM-AESMADFVQSR  177 (347)
Q Consensus       125 ~~~~l--------------------------f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~-a~~l~~fi~~~  177 (347)
                      +++++                          .++|+++++|+++++.++ |+..      ....|..+ .+++.++|++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~-G~~~------~~~~G~~~~~~~l~~~l~~~  164 (172)
T 3f9u_A           92 NKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNE-GNPL------NKSYAYDEDISKYINFLQTG  164 (172)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTT-SCBS------SCCBCSCCCHHHHHHHHHHH
T ss_pred             cccccchhhhhhhcchhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCC-CCEE------eeccCCCCCHHHHHHHHHHH
Confidence            87765                          789999999999999654 5543      33345566 99999999876


Q ss_pred             c
Q 048343          178 T  178 (347)
Q Consensus       178 t  178 (347)
                      +
T Consensus       165 l  165 (172)
T 3f9u_A          165 L  165 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.11  E-value=3.6e-10  Score=103.62  Aligned_cols=108  Identities=13%  Similarity=-0.020  Sum_probs=85.0

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      -..+++++++.+.   +- +....++.|||+    ||++ |+++.|.++++|..+.+.      +.+++.++++|+++++
T Consensus       122 ~~~l~~~~~~~~~---~~-~~~~~vv~F~a~----wC~~-C~~~~p~l~~la~~~~~~------~~~~v~~~~vd~~~~~  186 (243)
T 2hls_A          122 ESGLEDATKEALK---SL-KGRVHIETIITP----SCPY-CPYAVLLAHMFAYEAWKQ------GNPVILSEAVEAYENP  186 (243)
T ss_dssp             CCCCCHHHHHHHH---HC-CSCEEEEEEECS----SCSS-HHHHHHHHHHHHHHHHHT------TCCCEEEEEEETTTCH
T ss_pred             CCCCCHHHHHHHH---Hc-CCCcEEEEEECC----CCCC-cHHHHHHHHHHHHHcccc------cCCcEEEEEEECccCH
Confidence            3467888887764   11 223578889999    8999 899999999999987421      1246999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++.++|+++++||+++  .  |+.        .+.|.++.+++.+||.+..+.+.
T Consensus       187 ~~~~~~~V~~vPt~~i--~--G~~--------~~~G~~~~~~l~~~l~~~~~~~~  229 (243)
T 2hls_A          187 DIADKYGVMSVPSIAI--N--GYL--------VFVGVPYEEDFLDYVKSAAEGRL  229 (243)
T ss_dssp             HHHHHTTCCSSSEEEE--T--TEE--------EEESCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCeeeCeEEE--C--CEE--------EEeCCCCHHHHHHHHHHHhhccc
Confidence            9999999999999988  2  332        25677889999999999888654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.68  E-value=9.8e-12  Score=101.72  Aligned_cols=95  Identities=11%  Similarity=0.124  Sum_probs=73.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEcc--CCcchHhHcCCCCCceEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFK--ESQSSFALFAVNSLPHIR  142 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~--~~~~lf~~~~I~svP~l~  142 (347)
                      +..++|.|+|+    ||++ |+.+.|++   +++++.+          ++++.|+.+|++  +++++.++|+++++|+++
T Consensus        19 ~k~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~~~~----------~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~   83 (130)
T 2lst_A           19 GRMVMVYFHSE----HCPY-CQQMNTFVLSDPGVSRLL----------EARFVVASVSVDTPEGQELARRYRVPGTPTFV   83 (130)
Confidence            34689999999    8999 89999999   8888754          235889999995  567899999999999999


Q ss_pred             EEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          143 LVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       143 ~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      +|.|..|+..    ....+.|..+.+++.++|++.++..
T Consensus        84 ~~d~~~G~~~----~~~~~~G~~~~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           84 FLVPKAGAWE----EVGRLFGSRPRAEFLKELRQVCVKG  118 (130)
Confidence            9976434430    0134456677888999998877653

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.03  E-value=1.8e-09  Score=103.58  Aligned_cols=123  Identities=16%  Similarity=0.278  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhcCCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCC
Q 048343           33 LVSELLNLQSQSEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSS  112 (347)
Q Consensus        33 ~~~~L~~l~~~s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~  112 (347)
                      .+.+..+..  +...|.++|++|++++.   +.+.+ .++|+|+++    ||++ |+++.|+|+++|+.+.         
T Consensus       106 ~i~~fi~~~--~~p~v~~~~~~~~~~~~---~~~~~-~~~v~F~~~----~~~~-~~~~~~~~~~~A~~~~---------  165 (361)
T 3uem_A          106 NLLDFIKHN--QLPLVIEFTEQTAPKIF---GGEIK-THILLFLPK----SVSD-YDGKLSNFKTAAESFK---------  165 (361)
T ss_dssp             HHHHHHHHH--SSCSEEECSTTTHHHHH---SCSCC-EEEEEECCS----SSSS-HHHHHHHHHHHHGGGT---------
T ss_pred             HHHHHHHHc--CCCcceecCcccHHHHh---cCCCC-cEEEEEEeC----Cchh-HHHHHHHHHHHHHHcc---------
Confidence            344444433  23469999999999997   33222 567889998    8999 8999999999999872         


Q ss_pred             CCceEEEEEEcc--CCcchHhHcCCCC--CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          113 RGKLFFCYLEFK--ESQSSFALFAVNS--LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       113 ~~~v~F~~vD~~--~~~~lf~~~~I~s--vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                       +++.|+.+|.+  ++++++++|||++  +|++.+|..+....+   ..+  ..+..+++.|.+|+.+....+
T Consensus       166 -~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~k---y~~--~~~~~~~~~l~~fi~~~l~g~  232 (361)
T 3uem_A          166 -GKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTK---YKP--ESEELTAERITEFCHRFLEGK  232 (361)
T ss_dssp             -TTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--CCE---ECC--SSCCCCHHHHHHHHHHHHTTC
T ss_pred             -CceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCcccc---cCC--CccccCHHHHHHHHHHHhcCC
Confidence             46999999999  6889999999998  999999987421111   111  125689999999999987543

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.01  E-value=5.7e-10  Score=94.77  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             CceEEEEEe-cCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-----------chHhH
Q 048343           68 PYSILIFFD-AHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-----------SSFAL  132 (347)
Q Consensus        68 ~y~vvV~fT-A~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-----------~lf~~  132 (347)
                      +..++|.|| |+    ||++ |+.+.|++   +++++..          ++++.++.+|.++.+           ++.++
T Consensus        47 gk~vlv~F~ga~----wC~~-C~~~~p~l~~~~~~~~~~----------~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~  111 (154)
T 2ju5_A           47 HKPIGLFFTGSD----WCMW-CIKMQDQILQSSEFKHFA----------GVHLHMVEVDFPQKNHQPEEQRQKNQELKAQ  111 (154)
T ss_dssp             CCCEEEEEECTT----TCHH-HHHHHHHTTTSHHHHHHH----------HHHCEEEEEECCSSCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCC----CCHh-HHHHHHHHhcCHHHHHHh----------cCcEEEEEecCccccCCChhhHhhHHHHHHH
Confidence            346999999 98    8999 89999999   7776543          136899999998764           89999


Q ss_pred             cCCCCCceEEEEcCCCCCCCCcccccccccccc--CHHHHHHHHHhhcC
Q 048343          133 FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFAR--MAESMADFVQSRTK  179 (347)
Q Consensus       133 ~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~--~a~~l~~fi~~~t~  179 (347)
                      |+++++|+++++.++ |+..      ... |..  +.+++.++|++.++
T Consensus       112 ~~v~~~Pt~~~~d~~-G~~~------~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          112 YKVTGFPELVFIDAE-GKQL------ARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             TTCCSSSEEEEECTT-CCEE------EEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEEcCC-CCEE------EEe-cCCCCCHHHHHHHHHHHHh
Confidence            999999999999653 4442      233 434  78999999988765

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.00  E-value=5.4e-10  Score=100.30  Aligned_cols=92  Identities=12%  Similarity=0.056  Sum_probs=70.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAK  149 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g  149 (347)
                      .++++|++..--.||++ |+++.|+++++|+.+.+        ++++.|+++|++++++++++|+|+++||+.+|+.  +
T Consensus        23 v~v~~~~~~~~~~~C~~-c~~~~~~~~~~a~~~~~--------~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~--~   91 (229)
T 2ywm_A           23 VSIKLFSQAIGCESCQT-AEELLKETVEVIGEAVG--------QDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGD--K   91 (229)
T ss_dssp             EEEEEECCCTTCGGGGH-HHHHHHHHHHHHHHHHC--------TTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESS--S
T ss_pred             eEEEEEccCCCCcccHH-HHHHHHHHHHHHhccCC--------CCceEEEEecCcccHHHHHHcCCCcCcEEEEECC--C
Confidence            34455533201239999 89999999999988753        2579999999999999999999999999999973  2


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhhc
Q 048343          150 SLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       150 ~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ...      ..+.|.++.+++.+|+.+.+
T Consensus        92 ~~~------~~~~G~~~~~~l~~~~~~~~  114 (229)
T 2ywm_A           92 DYG------IRYIGLPAGLEFTTLINGIF  114 (229)
T ss_dssp             CCC------EEEESCCCTTHHHHHHHHHH
T ss_pred             ccc------ceecCCccHHHHHHHHHHHH
Confidence            221      44566677888888887754

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.98  E-value=3.8e-10  Score=98.01  Aligned_cols=80  Identities=8%  Similarity=-0.016  Sum_probs=66.5

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      .++++++.++.+.   + -++-.++|.|||+    ||++ |+...|.++++++.+           +++.|..+|.|+++
T Consensus        38 ~~~~~~~~~~~l~---~-~~~k~vvv~F~A~----WC~p-C~~~~P~l~~l~~~~-----------~~v~~~~v~~d~~~   97 (167)
T 1z6n_A           38 SNGLPSALTERLQ---R-IERRYRLLVAGEM----WCPD-CQINLAALDFAQRLQ-----------PNIELAIISKGRAE   97 (167)
T ss_dssp             HHCCCHHHHHHHH---T-CCSCEEEEEECCT----TCHH-HHHHHHHHHHHHHHC-----------TTEEEEEECHHHHH
T ss_pred             ccCCCHHHHHHHH---H-hCCCEEEEEEECC----CChh-HHHHHHHHHHHHHHC-----------CCcEEEEEECCCCH
Confidence            4678888877763   2 1234688999999    8999 899999999999764           25899999999999


Q ss_pred             chHhHcC---CCCCceEEEEcCC
Q 048343          128 SSFALFA---VNSLPHIRLVGPD  147 (347)
Q Consensus       128 ~lf~~~~---I~svP~l~~fpp~  147 (347)
                      ++.++|+   ++++||+++|.++
T Consensus        98 ~~~~~~~~~~v~~iPt~i~~~~~  120 (167)
T 1z6n_A           98 DDLRQRLALERIAIPLVLVLDEE  120 (167)
T ss_dssp             HHTTTTTTCSSCCSSEEEEECTT
T ss_pred             HHHHHHHHcCCCCcCeEEEECCC
Confidence            9988887   9999999999875

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.94  E-value=1.5e-09  Score=96.95  Aligned_cols=86  Identities=12%  Similarity=0.109  Sum_probs=66.9

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--CcchHhHcCCCCCceEEEEcCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      .++|+|+|+.   ||++ |++++|.++++|+.           .+++.|+++|+++  +++++++|||+++|++++|+.|
T Consensus        24 v~lv~f~~~~---~C~~-C~~~~~~~~~la~~-----------~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g   88 (226)
T 1a8l_A           24 VKLIVFVRKD---HCQY-CDQLKQLVQELSEL-----------TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG   88 (226)
T ss_dssp             EEEEEEECSS---SCTT-HHHHHHHHHHHHTT-----------CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred             eEEEEEecCC---CCch-hHHHHHHHHHHHhh-----------CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence            5678999974   7999 89999999999842           2479999999999  8999999999999999999754


Q ss_pred             CCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          148 AKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                        +..     ..++.+..+.+++.+|+.+.
T Consensus        89 --~~~-----~~~~~G~~~~~~l~~~l~~~  111 (226)
T 1a8l_A           89 --KDF-----GVRYFGLPAGHEFAAFLEDI  111 (226)
T ss_dssp             --BCC-----SEEEESCCCTTHHHHHHHHH
T ss_pred             --cee-----eEEEeccCcHHHHHHHHHHH
Confidence              211     12334445566677777664

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.92  E-value=4.7e-09  Score=86.40  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-----
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-----  123 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-----  123 (347)
                      ..++.+.++.-.  .   ++..++|.|+++    ||++ |++..|+++++++.+.          +++.|..+++     
T Consensus        15 ~~~~g~~~~~~~--~---~gk~~lv~f~~~----~C~~-C~~~~~~l~~l~~~~~----------~~~~~~~v~~~~~~~   74 (148)
T 2b5x_A           15 AWLNGEVTREQL--I---GEKPTLIHFWSI----SCHL-CKEAMPQVNEFRDKYQ----------DQLNVVAVHMPRSED   74 (148)
T ss_dssp             EEESCCCCHHHH--T---TTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHHT----------TTSEEEEEECCCSTT
T ss_pred             ccccCcccchhh--c---CCCEEEEEEEcC----CCHH-HHHHhHHHHHHHHHhc----------CCcEEEEEEcCCCcc
Confidence            345666554432  1   233689999998    8999 8999999999998872          2378888885     


Q ss_pred             ----------------------cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          124 ----------------------KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       124 ----------------------~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                                            +++.++.++|+++++|+++++.++ |...      ..+.+..+.+++.++|++.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           75 DLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKT-GQLR------HFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             TSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTT-CBEE------EEEESCSTTHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCCCCCEEEEECCC-CcEE------EEecCCCCHHHHHHHHHHHHh
Confidence                                  445689999999999999999654 4432      333455678889999987654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.91  E-value=9.6e-10  Score=88.12  Aligned_cols=72  Identities=14%  Similarity=0.032  Sum_probs=57.2

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc------CCcchHhHcCCCCCceEEE
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK------ESQSSFALFAVNSLPHIRL  143 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~------~~~~lf~~~~I~svP~l~~  143 (347)
                      .++|.|||+    ||++ |++++|+|+++|+.+          .      .+|++      +++++.++++|+++||+++
T Consensus        14 ~~vV~F~A~----WC~~-C~~~~p~~~~~a~~~----------~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i   72 (106)
T 3kp8_A           14 IGGTMYGAY----WCPH-CQDQKELFGAAFDQV----------P------YVECSPNGPGTPQAQECTEAGITSYPTWII   72 (106)
T ss_dssp             HTCEEEECT----TCHH-HHHHHHHHGGGGGGS----------C------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE
T ss_pred             CEEEEEECC----CCHH-HHHHHHHHHHHHHhC----------C------EEEEecccccchhHHHHHHcCCeEeCEEEE
Confidence            457899999    8999 899999999988544          1      45555      5788999999999999777


Q ss_pred             EcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          144 VGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       144 fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                        .  |+         .+.|.++.+++.+|+.
T Consensus        73 --~--G~---------~~~G~~~~~~l~~~~~   91 (106)
T 3kp8_A           73 --N--GR---------TYTGVRSLEALAVASG   91 (106)
T ss_dssp             --T--TE---------EEESCCCHHHHHHHHT
T ss_pred             --C--CE---------EecCCCCHHHHHHHhC
Confidence              2  32         2457788999999874

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.91  E-value=2.6e-09  Score=79.03  Aligned_cols=73  Identities=12%  Similarity=0.016  Sum_probs=58.4

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                      .|.|+|+    ||++ |+++.|.++++++.+          ++++.++++|   ++++.++++++++|++++  .  |+.
T Consensus         3 ~v~f~a~----wC~~-C~~~~~~l~~~~~~~----------~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~--G~~   60 (77)
T 1ilo_A            3 KIQIYGT----GCAN-CQMLEKNAREAVKEL----------GIDAEFEKIK---EMDQILEAGLTALPGLAV--D--GEL   60 (77)
T ss_dssp             EEEEECS----SSST-THHHHHHHHHHHHHT----------TCCEEEEEEC---SHHHHHHHTCSSSSCEEE--T--TEE
T ss_pred             EEEEEcC----CChh-HHHHHHHHHHHHHHc----------CCceEEEEec---CHHHHHHCCCCcCCEEEE--C--CEE
Confidence            5789998    8999 899999999999876          2368889998   778999999999999998  3  443


Q ss_pred             CCcccccccccccc-CHHHHHHHH
Q 048343          152 KDDSVQMEQGDFAR-MAESMADFV  174 (347)
Q Consensus       152 ~~~~~~~~~~~~~~-~a~~l~~fi  174 (347)
                      .      ..  |.. +.+++.+|+
T Consensus        61 ~------~~--G~~~~~~~l~~~l   76 (77)
T 1ilo_A           61 K------IM--GRVASKEEIKKIL   76 (77)
T ss_dssp             E------EC--SSCCCHHHHHHHC
T ss_pred             E------Ec--CCCCCHHHHHHHh
Confidence            2      11  444 788888775

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.88  E-value=7e-09  Score=85.04  Aligned_cols=87  Identities=7%  Similarity=0.074  Sum_probs=70.0

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------------------
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------------------  125 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------------------  125 (347)
                      ++..++|.|+++    ||++ |+...|+++++++.+.         ++++.|+.+++++                     
T Consensus        33 ~gk~~ll~f~~~----~C~~-C~~~~~~l~~~~~~~~---------~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~   98 (145)
T 3erw_A           33 KGQKTILHFWTS----WCPP-CKKELPQFQSFYDAHP---------SDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPI   98 (145)
T ss_dssp             TTSEEEEEEECS----SCHH-HHHHHHHHHHHHHHCC---------CSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCE
T ss_pred             CCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHcC---------CCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeE
Confidence            566899999998    8999 8999999999998762         2468889998864                     


Q ss_pred             ----CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHH
Q 048343          126 ----SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       126 ----~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                          +.++.++|+++++|+++++.++ |+..      ..+.+..+.+++.++|
T Consensus        99 ~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           99 VLDSKGELMKEYHIITIPTSFLLNEK-GEIE------KTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             EECSSSHHHHHTTCCEESEEEEECTT-CCEE------EEEESCCCHHHHHHHH
T ss_pred             EEcCchhHHHhcCcCccCeEEEEcCC-CcEE------EEEcCCcCHHHHHHhh
Confidence                5689999999999999999654 4432      3445667888888876

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.88  E-value=1.2e-08  Score=84.93  Aligned_cols=94  Identities=12%  Similarity=0.083  Sum_probs=74.2

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-------------------
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-------------------  127 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-------------------  127 (347)
                      ++..++|.|+++    ||++ |+...|+++++++.+.         +.++.|+.+++++.+                   
T Consensus        29 ~gk~~lv~f~~~----~C~~-C~~~~~~l~~l~~~~~---------~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~   94 (152)
T 2lja_A           29 KGKYIYIDVWAT----WCGP-CRGELPALKELEEKYA---------GKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHM   94 (152)
T ss_dssp             TTSEEEEEECCS----SCCG-GGGTHHHHHHHHHHST---------TSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             CCCEEEEEEECC----cCHh-HHHHhHHHHHHHHHhc---------cCCeEEEEEEccCcHHHHHHHHHhcCCCCceeec
Confidence            344789999998    8999 8999999999988762         235889999988754                   


Q ss_pred             ----chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          128 ----SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       128 ----~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                          ++.++|+++++|+++++.++ |...      ..+.+..+.+++.++|++..+-+
T Consensus        95 d~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A           95 GTDRTFMDAYLINGIPRFILLDRD-GKII------SANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             SSCTHHHHHTTCCSSCCEEEECTT-SCEE------ESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             CcchhHHHHcCcCCCCEEEEECCC-CeEE------EccCCCCCHHHHHHHHHHHhccc
Confidence                78999999999999999864 4442      33344567788999998877644

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.87  E-value=1.8e-09  Score=87.05  Aligned_cols=77  Identities=9%  Similarity=0.153  Sum_probs=63.3

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAK  149 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g  149 (347)
                      ..+++||++    ||++ |++++|.++++|+++            ++-|.++|+++++++.++|+++ +|++++|..+  
T Consensus        30 ~~vv~y~~~----~C~~-C~~a~~~L~~l~~e~------------~i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG--   89 (107)
T 2fgx_A           30 RKLVVYGRE----GCHL-CEEMIASLRVLQKKS------------WFELEVINIDGNEHLTRLYNDR-VPVLFAVNED--   89 (107)
T ss_dssp             CCEEEEECS----SCHH-HHHHHHHHHHHHHHS------------CCCCEEEETTTCHHHHHHSTTS-CSEEEETTTT--
T ss_pred             cEEEEEeCC----CChh-HHHHHHHHHHHHHhc------------CCeEEEEECCCCHHHHHHhCCC-CceEEEEECC--
Confidence            468899999    8999 899999999999864            3788999999999999999997 9999999753  


Q ss_pred             CCCCccccccccccccCHHHHHHHH
Q 048343          150 SLKDDSVQMEQGDFARMAESMADFV  174 (347)
Q Consensus       150 ~~~~~~~~~~~~~~~~~a~~l~~fi  174 (347)
                      +..        ..++.+.++|.+||
T Consensus        90 ~~v--------~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           90 KEL--------CHYFLDSDVIGAYL  106 (107)
T ss_dssp             EEE--------ECSSCCCHHHHHHH
T ss_pred             EEE--------EecCCCHHHHHHHh
Confidence            221        12456777888876

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.86  E-value=1.1e-08  Score=86.15  Aligned_cols=92  Identities=9%  Similarity=0.056  Sum_probs=73.5

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc--------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF--------------  133 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~--------------  133 (347)
                      +..++|.|+++    ||++ |++..|+++++++.|.         +.++.|+.+++++.++..+++              
T Consensus        34 gk~vlv~f~~~----~C~~-C~~~~~~l~~l~~~~~---------~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~   99 (165)
T 3or5_A           34 GKAYIVNFFAT----WCPP-CRSEIPDMVQVQKTWA---------SRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMAT   99 (165)
T ss_dssp             TCEEEEEEECT----TSHH-HHHHHHHHHHHHHHHT---------TTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECC
T ss_pred             CCEEEEEEEcC----cCHH-HHHHHHHHHHHHHHhc---------cCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecC
Confidence            34789999998    8999 8999999999999883         235999999999877666666              


Q ss_pred             -------------CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          134 -------------AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       134 -------------~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                                   +++++|+++++.++ |...      ..+.+..+.+++.++|++.++.
T Consensus       100 ~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A          100 PELIRAFNGYIDGGITGIPTSFVIDAS-GNVS------GVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             HHHHHHHHTTSTTCSCSSSEEEEECTT-SBEE------EEECSCCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhhhccCCCCCCeEEEECCC-CcEE------EEEcCCCCHHHHHHHHHHHHhh
Confidence                         99999999999764 4432      3445667889999999988764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.86  E-value=8.1e-09  Score=86.30  Aligned_cols=92  Identities=12%  Similarity=0.036  Sum_probs=72.8

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------  125 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------  125 (347)
                      +..++|.|||+    ||++ |+...|+++++++.+.         ++++.|..+++|+                      
T Consensus        24 gk~vlv~F~a~----wC~~-C~~~~~~l~~l~~~~~---------~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~   89 (151)
T 3raz_A           24 APVRIVNLWAT----WCGP-CRKEMPAMSKWYKAQK---------KGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTG   89 (151)
T ss_dssp             SSEEEEEEECT----TCHH-HHHHHHHHHHHHHTSC---------TTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECC
T ss_pred             CCEEEEEEEcC----cCHH-HHHHHHHHHHHHHHhc---------cCCeEEEEEECCChHHHHHHHHHcCCCCceEecCc
Confidence            44799999999    8999 8999999999998872         2468888888862                      


Q ss_pred             --CcchHhHcC--CCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 --SQSSFALFA--VNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 --~~~lf~~~~--I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                        ..++.+.|+  ++++|+.+++.++ |...      ..+.+..+.+++.++|++....
T Consensus        90 ~~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A           90 ANSRNFMKTYGNTVGVLPFTVVEAPK-CGYR------QTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             SCHHHHHHTTTCCSCCSSEEEEEETT-TTEE------EECCSCCCHHHHHHHHHHHHTC
T ss_pred             cchHHHHHHhCCccCCCCEEEEECCC-CcEE------EEECCCCCHHHHHHHHHHHHHH
Confidence              345788899  9999999999764 4442      4456677899999999886553

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.85  E-value=1.3e-08  Score=82.58  Aligned_cols=86  Identities=14%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------C
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------S  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------~  126 (347)
                      ..++|.|+++    ||++ |++..|+++++++.+          . ++.|+.+|.++                      +
T Consensus        25 k~~lv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   88 (136)
T 1lu4_A           25 KPAVLWFWTP----WCPF-CNAEAPSLSQVAAAN----------P-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDAD   88 (136)
T ss_dssp             SCEEEEEECT----TCHH-HHHHHHHHHHHHHHC----------T-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTT
T ss_pred             CEEEEEEECC----cChh-HHHHHHHHHHHHHHC----------C-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCc
Confidence            3689999998    8999 899999999998876          2 57888999877                      6


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccc---cccCHHHHHHHHHhhc
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD---FARMAESMADFVQSRT  178 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~---~~~~a~~l~~fi~~~t  178 (347)
                      .++.++|+++++|+++++.++ |..      . .+.   +..+.+++.++|++.+
T Consensus        89 ~~~~~~~~i~~~P~~~lid~~-G~i------~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           89 GVIWARYNVPWQPAFVFYRAD-GTS------T-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             SHHHHHTTCCSSSEEEEECTT-SCE------E-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             hhHHHhcCCCCCCEEEEECCC-CcE------E-EEEcCCCccCHHHHHHHHHHHh
Confidence            789999999999999999654 333      1 233   5678999999998753

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.85  E-value=6.9e-10  Score=90.83  Aligned_cols=89  Identities=9%  Similarity=-0.005  Sum_probs=66.2

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--cchHhHcCCCCCceEEEEcCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--QSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--~~lf~~~~I~svP~l~~fpp~  147 (347)
                      .++|+|+|+    ||++ |++++|+   ++..|....     ....+.+.++|++++  +++..+++|+++||+++|.. 
T Consensus        20 ~~LV~F~A~----wC~~-Ck~~~~~---i~~~~~~~a-----~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~-   85 (116)
T 3dml_A           20 LRLLMFEQP----GCLY-CARWDAE---IAPQYPLTD-----EGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAG-   85 (116)
T ss_dssp             EEEEEEECT----TCHH-HHHHHHH---TTTTGGGSH-----HHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEET-
T ss_pred             CEEEEEECC----CCHH-HHHHHHH---HHhhHHHhh-----hcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEEC-
Confidence            689999999    8999 7999864   333332110     011367888999886  57899999999999999994 


Q ss_pred             CCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          148 AKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                       |++.      .+..|..+++++.+||++.++
T Consensus        86 -G~ev------~Ri~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           86 -DVES------GRLEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             -TEEE------EEEECCCCHHHHHHHHHHHHH
T ss_pred             -CEEE------eeecCCCCHHHHHHHHHHHHh
Confidence             4543      455677889999999987653

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.83  E-value=1.9e-08  Score=83.83  Aligned_cols=92  Identities=11%  Similarity=0.080  Sum_probs=72.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------C
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------S  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------~  126 (347)
                      ..++|.|+++    ||++ |+...|+++++++.+..         .++.|..+++++                      +
T Consensus        27 k~vlv~F~~~----~C~~-C~~~~~~l~~~~~~~~~---------~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~   92 (151)
T 2f9s_A           27 KGVFLNFWGT----WCEP-CKKEFPYMANQYKHFKS---------QGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTD   92 (151)
T ss_dssp             SEEEEEEECT----TCHH-HHHHHHHHHHHHHHHGG---------GTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETT
T ss_pred             CEEEEEEECC----CCHH-HHHHHHHHHHHHHHhcc---------CCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCc
Confidence            4689999998    8999 89999999999998842         258888888875                      4


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCC
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      .++.+.|+++++|+++++.++ |...      ..+.+..+.+++.++|++.+...
T Consensus        93 ~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~G~~~~~~l~~~l~~ll~~~  140 (151)
T 2f9s_A           93 RQVLDAYDVSPLPTTFLINPE-GKVV------KVVTGTMTESMIHDYMNLIKPGE  140 (151)
T ss_dssp             SHHHHHTTCCSSCEEEEECTT-SEEE------EEEESCCCHHHHHHHHHHHSCC-
T ss_pred             hHHHHhcCCCCCCeEEEECCC-CcEE------EEEeCCCCHHHHHHHHHHHHhhh
Confidence            588999999999999999654 4432      33345568899999999887643

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.81  E-value=2.1e-09  Score=93.93  Aligned_cols=82  Identities=11%  Similarity=0.108  Sum_probs=65.2

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHH-H--HHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNE-F--SLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pe-f--e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      ..-+++.|++..   ..  +..++|.|||+    ||++ |+.++|+ |  +++++.+.          +++.++++|.++
T Consensus        25 ~~~~~ea~~~A~---~~--~KpVlvdF~A~----WC~~-Ck~m~~~~f~~~~va~~l~----------~~fv~ikVD~de   84 (173)
T 3ira_A           25 YPWGEEAFEKAR---KE--NKPVFLSIGYS----TCHW-CHMMAHESFEDEEVAGLMN----------EAFVSIKVDREE   84 (173)
T ss_dssp             BCSSHHHHHHHH---HH--TCCEEEEEECT----TCHH-HHHHHHHTTTCHHHHHHHH----------HHCEEEEEETTT
T ss_pred             CCcCHHHHHHHH---Hh--CCCEEEecccc----hhHh-hccccccccCCHHHHHHHH----------hcCceeeeCCcc
Confidence            345577888765   22  34799999999    9999 8999994 3  57777653          258999999999


Q ss_pred             CcchHhHc--------CCCCCceEEEEcCCCCCC
Q 048343          126 SQSSFALF--------AVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       126 ~~~lf~~~--------~I~svP~l~~fpp~~g~~  151 (347)
                      .+++.+.|        |++++|+++++.|+ |+.
T Consensus        85 ~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~d-G~~  117 (173)
T 3ira_A           85 RPDIDNIYMTVCQIILGRGGWPLNIIMTPG-KKP  117 (173)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCSSEEEEECTT-SCE
T ss_pred             cCcHHHHHHHHHHHHcCCCCCcceeeECCC-CCc
Confidence            99998888        99999999999875 553

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.81  E-value=1.9e-09  Score=92.76  Aligned_cols=96  Identities=10%  Similarity=0.152  Sum_probs=66.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc-hHhHcCC--CCCceEEEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS-SFALFAV--NSLPHIRLV  144 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~-lf~~~~I--~svP~l~~f  144 (347)
                      +..++|.|||+    ||++ |+.+.|.++++++.+..          ++.|+.+|++++++ +.+++++  +++|++++|
T Consensus        46 ~k~vlv~F~a~----WC~~-C~~~~p~l~~~~~~~~~----------~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~  110 (164)
T 1sen_A           46 GLPLMVIIHKS----WCGA-CKALKPKFAESTEISEL----------SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFL  110 (164)
T ss_dssp             TCCEEEEEECT----TCHH-HHHHHHHHHTCHHHHHH----------HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEE
T ss_pred             CCeEEEEEECC----CCHH-HHHHHHHHHHHHHHhhc----------CCeEEEEEecCCchHHHHHhcccCCcCCeEEEE
Confidence            34699999998    8999 89999999998765422          35677888887766 7888988  669999999


Q ss_pred             cCCCCCCCCccccc---ccc-ccccCHHHHHHHHHhhcC
Q 048343          145 GPDAKSLKDDSVQM---EQG-DFARMAESMADFVQSRTK  179 (347)
Q Consensus       145 pp~~g~~~~~~~~~---~~~-~~~~~a~~l~~fi~~~t~  179 (347)
                      .++ |+........   .++ -...+++++.++|++...
T Consensus       111 d~~-G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          111 DPS-GKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             CTT-SCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             CCC-CCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            543 4432010000   000 013678888888877543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.80  E-value=3.8e-09  Score=81.91  Aligned_cols=75  Identities=9%  Similarity=0.160  Sum_probs=59.3

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                      +++|||+    ||++ |++++|.+++++.+               .|.++|+++++++.++||++ +|++++ ..  |+.
T Consensus         3 vv~f~a~----~C~~-C~~~~~~L~~~~~~---------------~~~~vdid~~~~l~~~~g~~-vPtl~~-~~--G~~   58 (87)
T 1ttz_A            3 LTLYQRD----DCHL-CDQAVEALAQARAG---------------AFFSVFIDDDAALESAYGLR-VPVLRD-PM--GRE   58 (87)
T ss_dssp             EEEEECS----SCHH-HHHHHHHHHHTTCC---------------CEEEEECTTCHHHHHHHTTT-CSEEEC-TT--CCE
T ss_pred             EEEEECC----CCch-HHHHHHHHHHHHHh---------------heEEEECCCCHHHHHHhCCC-cCeEEE-EC--CEE
Confidence            6889999    8999 89999998875421               26899999999999999998 999988 53  333


Q ss_pred             CCccccccccccccCHHHHHHHHHhhcC
Q 048343          152 KDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      .         .++.+.+++.+||++...
T Consensus        59 v---------~g~~~~~~L~~~l~~~~~   77 (87)
T 1ttz_A           59 L---------DWPFDAPRLRAWLDAAPH   77 (87)
T ss_dssp             E---------ESCCCHHHHHHHHHTCC-
T ss_pred             E---------eCCCCHHHHHHHHHHHHH
Confidence            1         155788899999976543

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.80  E-value=2.7e-08  Score=80.43  Aligned_cols=87  Identities=18%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      ..++|.|+++    ||++ |+...|+++++++.+          + ++.|+.+|.++                       
T Consensus        26 k~~ll~f~~~----~C~~-C~~~~~~l~~~~~~~----------~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (136)
T 1zzo_A           26 KPAVLWFWAP----WCPT-CQGEAPVVGQVAASH----------P-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADT   89 (136)
T ss_dssp             SCEEEEEECT----TCHH-HHHHHHHHHHHHHHC----------T-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECT
T ss_pred             CeEEEEEEcC----CChh-HHHHHHHHHHHHHHc----------C-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcC
Confidence            3689999998    8999 899999999998876          1 57888888854                       


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +.++.++|+++++|+++++.++ |..      . .+.+..+.+++.++|++.++
T Consensus        90 ~~~~~~~~~i~~~P~~~~id~~-g~i------~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           90 DGSVWANFGVTQQPAYAFVDPH-GNV------D-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             TCHHHHHTTCCSSSEEEEECTT-CCE------E-EEESCCCHHHHHHHHHHHC-
T ss_pred             CcHHHHHcCCCCCceEEEECCC-CCE------E-EEecCCCHHHHHHHHHHHhc
Confidence            5688999999999999999764 332      1 34456678999999987653

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.80  E-value=2.6e-08  Score=82.03  Aligned_cols=90  Identities=7%  Similarity=-0.040  Sum_probs=69.1

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc------------------
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS------------------  128 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~------------------  128 (347)
                      ++..++|.|+++    ||++ |+...|+++++++.+..         .++.|+.++++++++                  
T Consensus        30 ~gk~vll~f~~~----~C~~-C~~~~~~l~~l~~~~~~---------~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~   95 (148)
T 3hcz_A           30 QAKYTILFFWDS----QCGH-CQQETPKLYDWWLKNRA---------KGIQVYAANIERKDEEWLKFIRSKKIGGWLNVR   95 (148)
T ss_dssp             CCSEEEEEEECG----GGCT-TCSHHHHHHHHHHHHGG---------GTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEE
T ss_pred             CCCEEEEEEECC----CCcc-HHHHHHHHHHHHHHhcc---------CCEEEEEEEecCCHHHHHHHHHHcCCCCceEEe
Confidence            344799999998    8999 89999999999998842         258999999997766                  


Q ss_pred             -------hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          129 -------SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       129 -------lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                             +.++|+++++|+++++.++ |...      ..+.+..+.+++.+.+.+.
T Consensus        96 d~~~~~~~~~~~~i~~~P~~~lid~~-G~i~------~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A           96 DSKNHTDFKITYDIYATPVLYVLDKN-KVII------AKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             CTTCCCCHHHHHCCCSSCEEEEECTT-CBEE------EESCCGGGHHHHHHHHHHH
T ss_pred             ccccchhHHHhcCcCCCCEEEEECCC-CcEE------EecCCHHHHHHHHHHHHHH
Confidence                   9999999999999999664 4442      2233445566666666543

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.78  E-value=2.5e-08  Score=80.36  Aligned_cols=86  Identities=9%  Similarity=0.031  Sum_probs=66.9

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-------------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-------------------------  123 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-------------------------  123 (347)
                      ..++|.|+++    ||++ |+...|+++++++.+          ++++.|..++.                         
T Consensus        23 k~~lv~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (138)
T 4evm_A           23 KKVYLKFWAS----WCSI-CLASLPDTDEIAKEA----------GDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLP   87 (138)
T ss_dssp             SEEEEEECCT----TCHH-HHHHHHHHHHHHHTC----------TTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCC
T ss_pred             CEEEEEEEcC----cCHH-HHHHHHHHHHHHHHh----------CCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCee
Confidence            3689999998    8999 899999999998763          23577777743                         


Q ss_pred             ---cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          124 ---KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       124 ---~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                         +++.++.++|+++++|+++++.++ |+..      ..+.+..+.+++.++|++
T Consensus        88 ~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           88 VLVDPSGKLLETYGVRSYPTQAFIDKE-GKLV------KTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             EEECTTCHHHHHTTCCSSSEEEEECTT-CCEE------EEEESCCCHHHHHHHHHH
T ss_pred             EEECcchHHHHHcCcccCCeEEEECCC-CcEE------EeecCCCcHHHHHHHHHh
Confidence               345679999999999999999664 4432      344556788999998876

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.78  E-value=5.2e-09  Score=88.21  Aligned_cols=116  Identities=10%  Similarity=0.005  Sum_probs=79.3

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCC-------------CCCC--
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNV-------------DNPS--  111 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p-------------~~~~--  111 (347)
                      .+..++.+.++...     .++..++|.|||+    ||++ |+...|+++++++.|....-             +..+  
T Consensus        22 ~l~~~~g~~~~~~~-----~~gk~vlv~F~a~----~C~~-C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~   91 (164)
T 2h30_A           22 TMKTADNRPASVYL-----KKDKPTLIKFWAS----WCPL-CLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEF   91 (164)
T ss_dssp             TCEETTSSBGGGGC-----CTTSCEEEEECCT----TCHH-HHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHH
T ss_pred             ccCCCCCCEeeHHH-----hCCCEEEEEEECC----CCHH-HHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHH
Confidence            45666666665332     2344699999998    8999 89999999999988642100             0000  


Q ss_pred             ----CCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          112 ----SRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       112 ----~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                          .+.++-++.++.+++.++.++|+++++|+++++.++ |...      ..+.+..+.+++.++|++...
T Consensus        92 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A           92 QKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKD-GDVQ------RIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             HHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTT-SCEE------EEEESCCCHHHHHHHHHCTTC
T ss_pred             HHHHHhCCCCcceEEEcCchHHHHHcCCCccceEEEECCC-CcEE------EEEcCCCCHHHHHHHHHHHHH
Confidence                001222245667778899999999999999999654 4432      334456789999999988765

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.76  E-value=1e-08  Score=87.60  Aligned_cols=96  Identities=13%  Similarity=0.141  Sum_probs=62.5

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-CCcchHhHcCCCCCceEEEEcC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-ESQSSFALFAVNSLPHIRLVGP  146 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-~~~~lf~~~~I~svP~l~~fpp  146 (347)
                      +..++|.|||+    ||++ |+.++|++.+.++.-...         +.-|+.+|+| ++.+...+++++++||+++|.|
T Consensus        44 ~KpVlV~F~A~----WC~~-Ck~m~p~~~~~~~~~~~~---------~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~  109 (151)
T 3ph9_A           44 KKPLMVIHHLE----DCQY-SQALKKVFAQNEEIQEMA---------QNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDP  109 (151)
T ss_dssp             TCCEEEEECCT----TCHH-HHHHHHHHHHCHHHHHHH---------HHTCEEEEESSCCSCGGGCTTCCCSSEEEEECT
T ss_pred             CCcEEEEEECC----CCHh-HHHHHHHHhcCHHHHHHh---------hcCeEEEEecCCchhhHhhcCCCCCCEEEEECC
Confidence            34699999999    8999 899999999754321100         1235666665 4567788999999999999997


Q ss_pred             CCCCCCCcc-----ccccccccccCHHHHHHHHHhhcC
Q 048343          147 DAKSLKDDS-----VQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       147 ~~g~~~~~~-----~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      + |+.....     +..+.+. ..+.+++.+.+++...
T Consensus       110 ~-G~~v~~~~G~~~~~~~~~~-~~~~~~ll~~~~~al~  145 (151)
T 3ph9_A          110 S-LTVRADIAGRYSNRLYTYE-PRDLPLLIENMKKALR  145 (151)
T ss_dssp             T-SCBCTTCCCSCTTSTTCCC-GGGHHHHHHHHHHHHS
T ss_pred             C-CCEEEEEeCCcCCcccccc-hhhHHHHHHHHHHHHH
Confidence            5 5543110     0011111 2456777777776544

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.75  E-value=4.4e-08  Score=82.09  Aligned_cols=91  Identities=5%  Similarity=-0.104  Sum_probs=69.8

Q ss_pred             ceEEEEEecCCCCCCChhhccc-chHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc------------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQE-LRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF------------------------  123 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~-l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~------------------------  123 (347)
                      ..++|.|||+    ||++ |+. +.|+++++++.|.         ++++.|..+++                        
T Consensus        31 k~vlv~F~a~----~C~~-C~~e~~~~l~~l~~~~~---------~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (160)
T 3lor_A           31 KVVVVEVFQM----LCPG-CVNHGVPQAQKIHRMID---------ESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKF   96 (160)
T ss_dssp             SEEEEEEECT----TCHH-HHHTHHHHHHHHHHHSC---------TTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCS
T ss_pred             CEEEEEEEcC----CCcc-hhhhhhHHHHHHHHHhC---------cCCcEEEEEeccccccccCCHHHHHHHHHHcCCCC
Confidence            4799999999    8999 687 6999999998873         23478888775                        


Q ss_pred             ----cCCcc------hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          124 ----KESQS------SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       124 ----~~~~~------lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                          +...+      +.++|+++++|+.+++.++ |...      ..+.+..+.+++.+.|++.+..
T Consensus        97 ~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A           97 PVAVDMPREGQRIPSTMKKYRLEGTPSIILADRK-GRIR------QVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             CEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTT-SBEE------EEEESCCCHHHHHHHHHHHHTC
T ss_pred             cEEECCccccchhhhHHHhcccCccceEEEECCC-CcEE------EEecCcCCHHHHHHHHHHHHhc
Confidence                33334      9999999999999999764 4443      3444567788899999887653

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.73  E-value=5.5e-08  Score=80.89  Aligned_cols=91  Identities=9%  Similarity=-0.028  Sum_probs=70.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-----------------------ccC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-----------------------FKE  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-----------------------~~~  125 (347)
                      ..++|.|+++    ||++ |+...|+++++++.+..         .++.|..++                       .++
T Consensus        29 k~~lv~f~~~----~C~~-C~~~~~~l~~l~~~~~~---------~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~   94 (153)
T 2l5o_A           29 KVTLINFWFP----SCPG-CVSEMPKIIKTANDYKN---------KNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDA   94 (153)
T ss_dssp             CEEEEEEECT----TCTT-HHHHHHHHHHHHHHGGG---------TTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECS
T ss_pred             CEEEEEEECC----CCcc-HHHHHHHHHHHHHHhcc---------CCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCc
Confidence            3689999998    8999 89999999999998742         245555544                       445


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      +.++.+.|+++++|+++++.++ |...      ..+.+..+.+++.++|++.+..
T Consensus        95 ~~~~~~~~~i~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~ll~~  142 (153)
T 2l5o_A           95 DKAVGQAFGTQVYPTSVLIGKK-GEIL------KTYVGEPDFGKLYQEIDTAWRN  142 (153)
T ss_dssp             SCHHHHHHTCCSSSEEEEECSS-SCCC------EEEESSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHcCCCccCeEEEECCC-CcEE------EEEcCCCCHHHHHHHHHHHHHh
Confidence            6789999999999999999764 4443      3345567889999999887654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.73  E-value=5.6e-08  Score=80.75  Aligned_cols=93  Identities=10%  Similarity=0.016  Sum_probs=70.8

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc--------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ--------------------  127 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~--------------------  127 (347)
                      +..++|.|+++    ||++ |+...|+++++++.+..         .++.|..+++++++                    
T Consensus        28 gk~vll~f~~~----~C~~-C~~~~~~l~~l~~~~~~---------~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~   93 (152)
T 3gl3_A           28 GSVVYLDFWAS----WCGP-CRQSFPWMNQMQAKYKA---------KGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDP   93 (152)
T ss_dssp             TSEEEEEEECT----TCTH-HHHHHHHHHHHHHHHGG---------GTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECT
T ss_pred             CCEEEEEEECC----cCHH-HHHHHHHHHHHHHHhhc---------CCeEEEEEECCCCHHHHHHHHHHcCCCCceeECC
Confidence            34789999998    8999 89999999999998843         24788888888654                    


Q ss_pred             --chHhHcCCCCCceEEEEcCCCCCCCCcccccccccc--ccCHHHHHHHHHhhcCCC
Q 048343          128 --SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF--ARMAESMADFVQSRTKLT  181 (347)
Q Consensus       128 --~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~--~~~a~~l~~fi~~~t~~~  181 (347)
                        ++.+.|+++++|+++++.++ |+..      ..+.+  +.+.+++.++|++.++.+
T Consensus        94 ~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A           94 KGQTPRLYGVKGMPTSFLIDRN-GKVL------LQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             TCHHHHHTTCCSSSEEEEECTT-SBEE------EEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             cchhHHHcCCCCCCeEEEECCC-CCEE------EEEccCCCcCHHHHHHHHHHHHccc
Confidence              67889999999999999664 4432      22222  346789999999987754

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.71  E-value=6.4e-08  Score=79.61  Aligned_cols=89  Identities=15%  Similarity=0.160  Sum_probs=68.6

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------  125 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------  125 (347)
                      +..++|.|+++    ||++ |+...|+++++++.|.+        +.++.|..+++++                      
T Consensus        33 gk~vll~F~~~----~C~~-C~~~~~~l~~l~~~~~~--------~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~   99 (148)
T 3fkf_A           33 NRYLLLNFWAS----WCDP-QPEANAELKRLNKEYKK--------NKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDF   99 (148)
T ss_dssp             TSEEEEEEECG----GGCC-CHHHHHHHHHHHHHTTT--------CTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCS
T ss_pred             CcEEEEEEECC----CCHH-HHHHhHHHHHHHHHhcC--------CCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEcc
Confidence            34799999998    8999 89999999999988721        2358888888886                      


Q ss_pred             ---CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 ---SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ---~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                         +.++.++|+++++|+++++.++ |...      ..+   .+.+++.++|++.+.
T Consensus       100 ~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~---~~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          100 TGLSSETAKQYAILTLPTNILLSPT-GKIL------ARD---IQGEALTGKLKELLK  146 (148)
T ss_dssp             CGGGCHHHHHTTCCSSSEEEEECTT-SBEE------EES---CCHHHHHHHHHHHC-
T ss_pred             CCcchHHHHhcCCCCcCEEEEECCC-CeEE------Eec---CCHHHHHHHHHHHHc
Confidence               4589999999999999999654 4432      111   168888888887654

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.71  E-value=5.8e-08  Score=81.31  Aligned_cols=92  Identities=11%  Similarity=-0.061  Sum_probs=70.2

Q ss_pred             CceEEEEEecCCCCCCChhhcccc-hHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc----------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQEL-RNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK----------------------  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l-~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~----------------------  124 (347)
                      +..++|.|||+    ||++ |+.. .|+++++++.|.         ++++.|..++++                      
T Consensus        28 gk~vlv~f~a~----wC~~-C~~~~~~~l~~l~~~~~---------~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~   93 (158)
T 3eyt_A           28 GKVIVIEAFQM----LCPG-CVMHGIPLAQKVRAAFP---------EDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIK   93 (158)
T ss_dssp             TSEEEEEEECT----TCHH-HHHTHHHHHHHHHHHSC---------TTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECC----cCcc-hhhhhhHHHHHHHHHhC---------cCCEEEEEEEecccccccCCHHHHHHHHHHcCCC
Confidence            34799999998    8999 7996 999999998873         235788877753                      


Q ss_pred             ------CCc-----chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          125 ------ESQ-----SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       125 ------~~~-----~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                            ...     ++.+.|+++++|+.+++.++ |...      ..+.+..+.+++.+.|++.+..
T Consensus        94 ~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A           94 FPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKA-GDLR------AHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             SCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTT-SEEE------EEEESCCCHHHHHHHHHHHHTS
T ss_pred             ceEEEcCccchhhHHHHHHcCCCCCCEEEEECCC-CCEE------EEEeCCCCHHHHHHHHHHHhcc
Confidence                  222     58999999999999999764 4432      3344567788999999887653

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.71  E-value=5.6e-08  Score=81.84  Aligned_cols=92  Identities=14%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-------------------Ccc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-------------------SQS  128 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-------------------~~~  128 (347)
                      +..++|.|+++    ||++ |+...|+++++++.+.         ++++.|+.++.++                   +.+
T Consensus        41 gk~vll~F~~~----~C~~-C~~~~~~l~~~~~~~~---------~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~  106 (158)
T 3hdc_A           41 GKIVLVNFWAS----WCPY-CRDEMPSMDRLVKSFP---------KGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQ  106 (158)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHHSS---------TTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSH
T ss_pred             CCEEEEEEECC----cCHH-HHHHHHHHHHHHHHcc---------cCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHH
Confidence            34789999998    8999 8999999999998873         2468999999987                   678


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCcccccccccc--ccCHHHHHHHHHhhcCC
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF--ARMAESMADFVQSRTKL  180 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~--~~~a~~l~~fi~~~t~~  180 (347)
                      +.++|+++++|+++++.++ |...      ..+.+  ..+.+++.+.+++..+.
T Consensus       107 ~~~~~~v~~~P~~~lid~~-G~i~------~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          107 VQQRYGANRLPDTFIVDRK-GIIR------QRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             HHHHTTCCSSSEEEEECTT-SBEE------EEEESCCCTTSHHHHHHHHTTC--
T ss_pred             HHHHhCCCCcceEEEEcCC-CCEE------EEEeCCCccchHHHHHHHHhhccc
Confidence            9999999999999999764 4442      22222  35567788888887664

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.67  E-value=4.9e-08  Score=81.39  Aligned_cols=88  Identities=15%  Similarity=0.001  Sum_probs=69.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-------------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-------------------------  123 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-------------------------  123 (347)
                      ..++|.||++    ||++ |+...|+++++++.+  +          +.|..+++                         
T Consensus        31 k~vll~f~~~----~C~~-C~~~~~~l~~l~~~~--~----------v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d   93 (154)
T 3ia1_A           31 KPAVIVFWAS----WCTV-CKAEFPGLHRVAEET--G----------VPFYVISREPRDTREVVLEYMKTYPRFIPLLAS   93 (154)
T ss_dssp             SSEEEEEECT----TCHH-HHHHHHHHHHHHHHH--C----------CCEEEEECCTTCCHHHHHHHHTTCTTEEECBCC
T ss_pred             CeEEEEEEcc----cChh-HHHHHHHHHHHHHHc--C----------CeEEEEeCCCcccHHHHHHHHHHcCCCcccccc
Confidence            4689999998    8999 899999999999887  2          45556666                         


Q ss_pred             --cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          124 --KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       124 --~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                        ++..++.++|+++++|+++++.++ |+..      ..+.+..+.+++.++|++.++-
T Consensus        94 ~~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~~~~~  145 (154)
T 3ia1_A           94 DRDRPHEVAARFKVLGQPWTFVVDRE-GKVV------ALFAGRAGREALLDALLLAGAD  145 (154)
T ss_dssp             SSCCHHHHHTTSSBCSSCEEEEECTT-SEEE------EEEESBCCHHHHHHHHHHTTCC
T ss_pred             cccchHHHHHHhCCCcccEEEEECCC-CCEE------EEEcCCCCHHHHHHHHHhccCc
Confidence              245688999999999999999654 4432      3445567899999999998764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.67  E-value=6.3e-08  Score=80.89  Aligned_cols=87  Identities=11%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      ..++|.|||+    ||++ |+...|+++++++.|.         +.++.|..+++++                       
T Consensus        30 k~vll~F~a~----~C~~-C~~~~~~l~~l~~~~~---------~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~   95 (152)
T 2lrn_A           30 KYVLVDFWFA----GCSW-CRKETPYLLKTYNAFK---------DKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQK   95 (152)
T ss_dssp             SEEEEEEECT----TCTT-HHHHHHHHHHHHHHHT---------TTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECH
T ss_pred             CEEEEEEECC----CChh-HHHHHHHHHHHHHHhc---------cCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEeccc
Confidence            3789999998    8999 8999999999999883         2358888898887                       


Q ss_pred             --CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 --SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 --~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                        +.++.+.|+++++|+++++.++ |+..      ..+   .+.+++.++|++..+
T Consensus        96 ~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~---~~~~~l~~~l~~l~~  141 (152)
T 2lrn_A           96 DDVKDVLESYCIVGFPHIILVDPE-GKIV------AKE---LRGDDLYNTVEKFVN  141 (152)
T ss_dssp             HHHHHHHHHTTCCSSCEEEEECTT-SEEE------EEC---CCTTHHHHHHHHHHT
T ss_pred             chhHHHHHHhCCCcCCeEEEECCC-CeEE------Eee---CCHHHHHHHHHHHHh
Confidence              4678999999999999999654 4432      111   234567777776655

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.66  E-value=6.6e-08  Score=79.49  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHH---HHHHhhhcCCCCCCCCCceEEEEEEccCCcch---------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSL---VASSFIANNVDNPSSRGKLFFCYLEFKESQSS---------------  129 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~---vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l---------------  129 (347)
                      +..++|.|||+    ||++ |+...|++++   +++.+..         .++.|..++++++++.               
T Consensus        27 gk~vll~F~a~----~C~~-C~~~~~~l~~~~~l~~~~~~---------~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~   92 (142)
T 3ewl_A           27 AQYTMLFFYDP----DCSN-CRKFEKLFAEIPAFVEMVEN---------GTLRVLAIYPDENREEWATKAVYMPQGWIVG   92 (142)
T ss_dssp             CSEEEEEECCS----SCHH-HHHHHHHHHTCHHHHHHHHH---------TSEEEEEEECSSCHHHHHHHHTTSCTTCEEE
T ss_pred             CCEEEEEEECC----CCcc-HHHHHHHHHHhHHHHHHhcc---------CCeEEEEEEecCCHHHHHHHHHHcCCCccee
Confidence            44799999999    8999 8999999998   7877742         2588888888865543               


Q ss_pred             ---------HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          130 ---------FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       130 ---------f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                               .+.|+++++|+++++.++ |...      .   +..+.+++.++|++..+
T Consensus        93 ~d~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~---~~~~~~~l~~~l~~~~~  141 (142)
T 3ewl_A           93 WNKAGDIRTRQLYDIRATPTIYLLDGR-KRVI------L---KDTSMEQLIDYLATQAG  141 (142)
T ss_dssp             ECTTCHHHHTTCSCCCSSSEEEEECTT-CBEE------E---CSCCHHHHHHHHHC---
T ss_pred             eCCccchhhHHHcCCCCCCeEEEECCC-CCEE------e---cCCCHHHHHHHHHHHcc
Confidence                     348999999999999764 4432      1   23578999999987654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.61  E-value=1.3e-07  Score=78.58  Aligned_cols=92  Identities=8%  Similarity=0.029  Sum_probs=68.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      +..++|.|+++    ||++ |++..|+++++++.+.         +.++.|..++++++                     
T Consensus        28 gk~vll~f~~~----~C~~-C~~~~~~l~~~~~~~~---------~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d   93 (154)
T 3kcm_A           28 GQVVIVNFWAT----WCPP-CREEIPSMMRLNAAMA---------GKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLD   93 (154)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHHTT---------TSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEEC
T ss_pred             CCEEEEEEECC----CCHH-HHHHHHHHHHHHHHhc---------cCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEec
Confidence            34789999998    8999 8999999999998873         23688888888875                     


Q ss_pred             --cchHhHcCCCCCceEEEEcCCCCCCCCcccccccccc--ccCHHHHHHHHHhhcCC
Q 048343          127 --QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF--ARMAESMADFVQSRTKL  180 (347)
Q Consensus       127 --~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~--~~~a~~l~~fi~~~t~~  180 (347)
                        .++.++|+++++|+.+++.++ |+..      ..+.+  ..+.+++.++|++..+.
T Consensus        94 ~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A           94 ADKRVGKLYGTTGVPETFVIDRH-GVIL------KKVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             TTCHHHHHHTCCSBCEEEEECTT-SBEE------EEEESCCCTTSHHHHHHHHTC---
T ss_pred             CchHHHHHhCCCCCCeEEEECCC-CcEE------EEEcCCCccccHHHHHHHHHHHHH
Confidence              458899999999988888664 4432      22222  24567888999876553

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.60  E-value=1.6e-07  Score=80.92  Aligned_cols=97  Identities=5%  Similarity=-0.016  Sum_probs=71.4

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-CcchHhHc------------
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-SQSSFALF------------  133 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-~~~lf~~~------------  133 (347)
                      ++..++|.||++    ||++ |+...|+++++++.|....   .....++.|..++.++ +++..+++            
T Consensus        58 ~gk~vlv~F~a~----~C~~-C~~~~~~l~~l~~~~~~~~---~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~  129 (183)
T 3lwa_A           58 ENQVVILNAWGQ----WCAP-CRSESDDLQIIHEELQAAG---NGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIY  129 (183)
T ss_dssp             TTSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHHHCC------CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEE
T ss_pred             CCCEEEEEEECC----cCHh-HHHHHHHHHHHHHHHHhcC---CCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEE
Confidence            345799999998    8999 8999999999999986431   0123456999999998 66555555            


Q ss_pred             -------------CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          134 -------------AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       134 -------------~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                                   +++++|+.+++.+. |...      ..+.+..+.+++.++|++.+
T Consensus       130 d~~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          130 DPPFMTAASLGGVPASVIPTTIVLDKQ-HRPA------AVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             CTTCGGGGGTTTCCTTCCSEEEEECTT-SCEE------EEECSCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHhccCCCCCCCeEEEECCC-CcEE------EEEcCCCCHHHHHHHHHHHH
Confidence                         78999988888764 4442      33445567889999888754

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.60  E-value=1.2e-07  Score=78.17  Aligned_cols=85  Identities=13%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHH---HHHHhhhcCCCCCCCCCceEEEEEEccCCcc----------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSL---VASSFIANNVDNPSSRGKLFFCYLEFKESQS----------------  128 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~---vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----------------  128 (347)
                      ...++|.|||+    ||++ |++..|++++   +.+.+..         .++.+..++.++.++                
T Consensus        31 gk~vll~F~a~----wC~~-C~~~~~~l~~~~~l~~~~~~---------~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~   96 (142)
T 3eur_A           31 AEYTLLFINNP----GCHA-CAEMIEGLKASPVINGFTAA---------KKLKVLSIYPDEELDEWKKHRNDFAKEWTNG   96 (142)
T ss_dssp             CSEEEEEECCS----SSHH-HHHHHHHHHHCHHHHHHHHT---------TSEEEEEEECSSCHHHHHHHGGGSCTTSEEE
T ss_pred             CCEEEEEEECC----CCcc-HHHHHHHHhhhHHHHHHhcc---------CCeEEEEEEcCCCHHHHHHHHHhcccccccc
Confidence            44799999999    8999 8999999999   8888742         368888888887632                


Q ss_pred             --------hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          129 --------SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       129 --------lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                              +.+.|+++++|+++++.++ |...      ..   ..+.+++.+||++
T Consensus        97 ~d~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~---~~~~~~l~~~l~e  142 (142)
T 3eur_A           97 YDKELVIKNKNLYDLRAIPTLYLLDKN-KTVL------LK---DATLQKVEQYLAE  142 (142)
T ss_dssp             ECTTCHHHHTTCSCCTTCSEEEEECTT-CBEE------EE---EECHHHHHHHHHC
T ss_pred             cCccchhhhhhhcCCCcCCeEEEECCC-CcEE------ec---CCCHHHHHHHHhC
Confidence                    4788999999999999764 4432      11   2357888888864

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.59  E-value=1.1e-08  Score=96.42  Aligned_cols=76  Identities=11%  Similarity=-0.087  Sum_probs=55.3

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-cCCcchHhHcCCCCCceEEEEcCCCC
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-KESQSSFALFAVNSLPHIRLVGPDAK  149 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-~~~~~lf~~~~I~svP~l~~fpp~~g  149 (347)
                      .+|+|+|+    ||++ |++++|+|+++|+++           +++-+.+.|. ++++++.++++++++||+++  .  |
T Consensus       200 ~vV~F~A~----WC~~-Ck~l~p~le~lA~~l-----------~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~--G  259 (291)
T 3kp9_A          200 GGTMYGAY----WCPH-CQDQKELFGAAFDQV-----------PYVECSPNGPGTPQAQECTEAGITSYPTWII--N--G  259 (291)
T ss_dssp             TCEEEECT----TCHH-HHHHHHHHGGGGGGS-----------CEEESCSSCSSSCCCHHHHTTTCCSTTEEEE--T--T
T ss_pred             CEEEEECC----CCHH-HHHHHHHHHHHHHHc-----------CEEEEeecCchhhHHHHHHHcCCcccCeEEE--C--C
Confidence            36899999    8999 899999999998543           1111111222 33789999999999999655  3  3


Q ss_pred             CCCCccccccccccccCHHHHHHHHH
Q 048343          150 SLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       150 ~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +         .+.|.++.+++.+|++
T Consensus       260 ~---------~~~G~~~~~~L~~~l~  276 (291)
T 3kp9_A          260 R---------TYTGVRSLEALAVASG  276 (291)
T ss_dssp             E---------EEESCCCHHHHHHHTC
T ss_pred             E---------EecCCCCHHHHHHHHC
Confidence            2         2567789999999874

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.58  E-value=1.9e-07  Score=78.89  Aligned_cols=88  Identities=11%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc------------------CC--
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK------------------ES--  126 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~------------------~~--  126 (347)
                      ++..+||.||++    ||++ |+...|+++++++.+          . ++.|..++++                  ++  
T Consensus        36 ~gk~~lv~F~~~----~C~~-C~~~~~~l~~l~~~~----------~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~   99 (165)
T 3ha9_A           36 GGDVVILWFMAA----WCPS-CVYMADLLDRLTEKY----------R-EISVIAIDFWTAEALKALGLNKPGYPPPDTPE   99 (165)
T ss_dssp             CSSEEEEEEECT----TCTT-HHHHHHHHHHHHHHC----------T-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHH
T ss_pred             CCCEEEEEEECC----CCcc-hhhhHHHHHHHHHHc----------C-CcEEEEEEecccccccccccccccCCCCCCHH
Confidence            445799999998    8999 899999999998876          2 6888888887                  44  


Q ss_pred             --------------------cchHhHcCCCCCceEEEEcCCCCCCCCcccccccccccc-CHHHHHHHHHhhcC
Q 048343          127 --------------------QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFAR-MAESMADFVQSRTK  179 (347)
Q Consensus       127 --------------------~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~-~a~~l~~fi~~~t~  179 (347)
                                          .++.+.|+++++|+++++.++ |+..      .  .+.. +.+++.+.|++..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~-G~i~------~--~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          100 MFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKS-SNVL------Y--AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             HHHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETT-CCEE------E--EEESCCHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCC-CcEE------E--eCCCCCHHHHHHHHHHHhc
Confidence                                378999999999999999764 4443      1  3445 78899999887653

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.58  E-value=1.3e-07  Score=86.48  Aligned_cols=99  Identities=11%  Similarity=0.060  Sum_probs=70.7

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCc--eEEEEEEccCCcchHh
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGK--LFFCYLEFKESQSSFA  131 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~--v~F~~vD~~~~~~lf~  131 (347)
                      +.+++++   +. -+-.++|.|+++|.  +|++ |++++|.++++|+.+-+ +      +++  +.|+++|.++++++++
T Consensus        15 ~ql~~~~---~~-~~~pv~v~~~~~~~--~c~~-c~~~~~~l~ela~~~~~-~------~~~~~v~~~~vd~d~~~~~~~   80 (243)
T 2hls_A           15 RELRETL---AE-MVNPVEVHVFLSKS--GCET-CEDTLRLMKLFEEESPT-R------NGGKLLKLNVYYRESDSDKFS   80 (243)
T ss_dssp             HHHHHHH---TT-CCSCEEEEEEECSS--SCTT-HHHHHHHHHHHHHHSCE-E------TTEESEEEEEEETTTTHHHHH
T ss_pred             HHHHHHH---Hh-CCCCEEEEEEeCCC--CCCc-hHHHHHHHHHHHHhccC-C------CCCceeEEEEecCCcCHHHHH
Confidence            3566666   22 13358888889832  2999 89999999999987411 0      233  9999999999999999


Q ss_pred             HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +|||+++|++.+| .  | .       ..|.+..+.+++.+|+.+.
T Consensus        81 ~~gv~~~Pt~~i~-~--g-~-------~~~~G~~~~~~l~~fv~~~  115 (243)
T 2hls_A           81 EFKVERVPTVAFL-G--G-E-------VRWTGIPAGEEIRALVEVI  115 (243)
T ss_dssp             HTTCCSSSEEEET-T--T-T-------EEEESCCCTTHHHHHHHHH
T ss_pred             hcCCCcCCEEEEE-C--C-c-------eeEcCCCcHHHHHHHHHHH
Confidence            9999999999999 3  2 1       2333444555666666553

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.55  E-value=2.1e-07  Score=79.48  Aligned_cols=71  Identities=10%  Similarity=0.143  Sum_probs=58.2

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      +..+||.|||+    ||++ |++..|+++++++.|..        ..++.+..+++|+.                     
T Consensus        48 gk~vll~F~a~----wC~~-C~~~~p~l~~l~~~~~~--------~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3s9f_A           48 GKTVFFYFSAS----WCPP-CRGFTPQLVEFYEKHHD--------SKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANR  114 (165)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCH
T ss_pred             CCEEEEEEECC----cChh-HHHHHHHHHHHHHHhcc--------CCCeEEEEEecCCCHHHHHHHHHhCCCcccccCch
Confidence            34789999999    8999 89999999999998842        23677778887766                     


Q ss_pred             ---cchHhHcCCCCCceEEEEcCCCCCC
Q 048343          127 ---QSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       127 ---~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                         .++.++|+++++|+++++.+.+|+.
T Consensus       115 ~~~~~l~~~~~v~~~Pt~~lid~~~G~i  142 (165)
T 3s9f_A          115 NIVEALTKKYSVESIPTLIGLNADTGDT  142 (165)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             hHHHHHHHHcCCCCCCEEEEEeCCCCEE
Confidence               6789999999999999998742443

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.54  E-value=2.1e-07  Score=94.19  Aligned_cols=98  Identities=7%  Similarity=-0.052  Sum_probs=74.4

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      .-.+++++.++++.   +...+ ..++.|+|+    ||++ |+.+.|.++++|..+           .++.|.++|.+++
T Consensus       100 ~~~~~~~~~~~~i~---~~~~~-~~i~~f~a~----~C~~-C~~~~~~l~~~a~~~-----------~~v~~~~vd~~~~  159 (521)
T 1hyu_A          100 HPSKEAQSLLEQIR---DIDGD-FEFETYYSL----SCHN-CPDVVQALNLMAVLN-----------PRIKHTAIDGGTF  159 (521)
T ss_dssp             CCCCSCHHHHHHHH---HCCSC-EEEEEEECT----TCSS-HHHHHHHHHHHHHHC-----------TTEEEEEEETTTC
T ss_pred             CCCCCCHHHHHHHH---hcCCC-cceEEEECC----CCcC-cHHHHHHHHHHHhHc-----------CceEEEEEechhh
Confidence            34688999888884   22222 568889999    8999 899999999998764           2699999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      +++.++++++++|++++  .  |+..      .  .+..+.+++.+|+.+
T Consensus       160 ~~~~~~~~i~svPt~~i--~--g~~~------~--~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          160 QNEITERNVMGVPAVFV--N--GKEF------G--QGRMTLTEIVAKVDT  197 (521)
T ss_dssp             HHHHHHTTCCSSSEEEE--T--TEEE------E--ESCCCHHHHHHHHCC
T ss_pred             HHHHHHhCCCccCEEEE--C--CEEE------e--cCCCCHHHHHHHHhh
Confidence            99999999999999977  2  3321      1  134556666666644

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.51  E-value=2.7e-07  Score=76.12  Aligned_cols=70  Identities=13%  Similarity=0.162  Sum_probs=56.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      +..++|.|+|+    ||++ |+...|+++++++.+..        ++++.+..+++++.                     
T Consensus        28 gk~vll~F~a~----wC~~-C~~~~~~l~~l~~~~~~--------~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T 1i5g_A           28 GKTVFFYFSAS----WCPP-SRAFTPQLIDFYKAHAE--------KKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDR   94 (144)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCH
T ss_pred             CCEEEEEEECC----CCHH-HHHHHHHHHHHHHHhcc--------CCCEEEEEEeCCCCHHHHHHHHHhCCccccccCch
Confidence            34799999998    8999 89999999999998842        23677888887753                     


Q ss_pred             ---cchHhHcCCCCCceEEEEc-CCCCCC
Q 048343          127 ---QSSFALFAVNSLPHIRLVG-PDAKSL  151 (347)
Q Consensus       127 ---~~lf~~~~I~svP~l~~fp-p~~g~~  151 (347)
                         .++.++|+++++|+++++. ++ |..
T Consensus        95 d~~~~~~~~~~v~~~P~~~lid~~~-G~i  122 (144)
T 1i5g_A           95 KGMEFLTTGFDVKSIPTLVGVEADS-GNI  122 (144)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTT-CCE
T ss_pred             HHHHHHHHHcCCCCCCEEEEEECCC-CcE
Confidence               4789999999999999997 43 443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.51  E-value=2.8e-07  Score=76.36  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      +..++|.|+|+    ||++ |+...|+++++++.+..        ++++.+..+++++.                     
T Consensus        28 gk~vll~F~a~----wC~~-C~~~~p~l~~l~~~~~~--------~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~   94 (146)
T 1o8x_A           28 GKLVFFYFSAS----WCPP-ARGFTPQLIEFYDKFHE--------SKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQS   94 (146)
T ss_dssp             TCEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGH
T ss_pred             CCEEEEEEEcc----CCHH-HHHHHHHHHHHHHHhhh--------cCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchh
Confidence            34789999998    8999 89999999999998842        23577777777753                     


Q ss_pred             ---cchHhHcCCCCCceEEEEc-CCCCCC
Q 048343          127 ---QSSFALFAVNSLPHIRLVG-PDAKSL  151 (347)
Q Consensus       127 ---~~lf~~~~I~svP~l~~fp-p~~g~~  151 (347)
                         .++.++|+++++|+++++. ++ |+.
T Consensus        95 d~~~~~~~~~~v~~~Pt~~lid~~~-G~i  122 (146)
T 1o8x_A           95 EAVQKLSKHFNVESIPTLIGVDADS-GDV  122 (146)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTT-CCE
T ss_pred             hHHHHHHHHhCCCCCCEEEEEECCC-CeE
Confidence               4789999999999999997 43 443

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.50  E-value=3e-07  Score=75.69  Aligned_cols=71  Identities=11%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      +..++|.|+|+    ||++ |+...|+++++++.+..        ++++.+..+++++.                     
T Consensus        28 gk~vll~F~a~----wC~~-C~~~~~~l~~l~~~~~~--------~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T 1o73_A           28 GKTVFLYFSAS----WCPP-CRGFTPVLAEFYEKHHV--------AKNFEVVLISWDENESDFHDYYGKMPWLALPFDQR   94 (144)
T ss_dssp             TCEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCH
T ss_pred             CCEEEEEEECc----CCHH-HHHHHHHHHHHHHHhcc--------CCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccch
Confidence            34689999998    8999 89999999999998742        23577777777753                     


Q ss_pred             ---cchHhHcCCCCCceEEEEcCCCCCC
Q 048343          127 ---QSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       127 ---~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                         .++.++|+++++|+++++.+..|+.
T Consensus        95 ~~~~~~~~~~~v~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A           95 STVSELGKTFGVESIPTLITINADTGAI  122 (144)
T ss_dssp             HHHHHHHHHHTCCSSSEEEEEETTTCCE
T ss_pred             hHHHHHHHHcCCCCCCEEEEEECCCCeE
Confidence               4689999999999999998322543

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.49  E-value=2e-07  Score=78.96  Aligned_cols=86  Identities=7%  Similarity=-0.050  Sum_probs=61.2

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-----------------------cc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-----------------------FK  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-----------------------~~  124 (347)
                      +..++|.||++    ||++ |+...|+++++++.             ++.|..+|                       .+
T Consensus        51 gk~vll~F~a~----~C~~-C~~~~~~l~~l~~~-------------~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d  112 (168)
T 2b1k_A           51 GKPVLLNVWAT----WCPT-CRAEHQYLNQLSAQ-------------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFD  112 (168)
T ss_dssp             SSCEEEEEECT----TCHH-HHHHHHHHHHHHHT-------------TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEE
T ss_pred             CCEEEEEEECC----CCHH-HHHHHHHHHHHHHC-------------CCEEEEEECCCChHHHHHHHHHcCCCCceeeEC
Confidence            44689999998    8999 89999999988753             23344444                       45


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++.++.++|+++++|+.+++.++ |...      ..+.+..+.+++.++|++.+
T Consensus       113 ~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          113 GDGMLGLDLGVYGAPETFLIDGN-GIIR------YRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             TTCHHHHHHTCCSSSEEEEECTT-SBEE------EEEESCCCHHHHHHTTHHHH
T ss_pred             cchHHHHHcCccccCEEEEECCC-CeEE------EEEeCCCCHHHHHHHHHHHH
Confidence            56789999999999977777653 4432      33345566777777776543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.48  E-value=1.4e-06  Score=78.33  Aligned_cols=119  Identities=14%  Similarity=0.152  Sum_probs=86.6

Q ss_pred             HHHHHHhc-CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCC
Q 048343           36 ELLNLQSQ-SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRG  114 (347)
Q Consensus        36 ~L~~l~~~-s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~  114 (347)
                      +|.+...+ +-.-|.++|.+|++++.   +.+.+ ..+++|..+    ||+. |+++.+.|+++|+.+.          +
T Consensus       102 ~l~~fi~~~~~plv~e~t~~n~~~~~---~~~~~-~~~l~f~~~----~~~~-~~~~~~~~~~vAk~~k----------~  162 (227)
T 4f9z_D          102 KLSRFIEINSLHMVTEYNPVTVIGLF---NSVIQ-IHLLLIMNK----ASPE-YEENMHRYQKAAKLFQ----------G  162 (227)
T ss_dssp             HHHHHHHHHCCCSEEECCHHHHHHHH---HSSCC-EEEEEEECT----TSTT-HHHHHHHHHHHHHHTT----------T
T ss_pred             HHHHHHHHhCCCceeecCcccHHHHh---ccCCc-eEEEEEEcC----Ccch-HHHHHHHHHHHHHHhh----------C
Confidence            34444332 23459999999999987   33333 455667665    7999 7999999999999873          4


Q ss_pred             ceEEEEEEccC--CcchHhHcCCC--CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          115 KLFFCYLEFKE--SQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       115 ~v~F~~vD~~~--~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++.|+.+|.++  .+.+.+.||++  ..|++.++..+. ...   ..+.  .+..+++.|.+|+++...
T Consensus       163 ~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~-~~k---y~~~--~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          163 KILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLD-DEW---DTLP--TAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSS-CCE---EEET--TCCCCHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCC-Ccc---ccCC--cCCCCHHHHHHHHHHHhC
Confidence            69999999974  56789999999  899999998642 111   1221  234789999999987653

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.46  E-value=2.7e-07  Score=76.72  Aligned_cols=87  Identities=7%  Similarity=0.021  Sum_probs=63.3

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-----------------------c
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-----------------------K  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-----------------------~  124 (347)
                      +..++|.|+++    ||++ |+...|+++++++.            +++.|..+++                       +
T Consensus        42 gk~~ll~f~~~----~C~~-C~~~~~~l~~l~~~------------~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d  104 (156)
T 1kng_A           42 GKVSLVNVWAS----WCVP-CHDEAPLLTELGKD------------KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVD  104 (156)
T ss_dssp             TSCEEEEEECT----TCHH-HHHHHHHHHHHTTC------------TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEE
T ss_pred             CCEEEEEEEcc----cCHh-HHHHHHHHHHHHhc------------CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeC
Confidence            34689999998    8999 89999999887542            2466677665                       3


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++.++.++|+++++|+.+++.++ |...      ..+.+..+.+++.++|++.+
T Consensus       105 ~~~~~~~~~~v~~~P~~~~id~~-G~i~------~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          105 ANGRASIEWGVYGVPETFVVGRE-GTIV------YKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             TTSHHHHHTTCCSSCEEEEECTT-SBEE------EEEESCCCHHHHHHTHHHHH
T ss_pred             chhHHHHhcCcCccCeEEEEcCC-CCEE------EEEeCCCCHHHHHHHHHHHH
Confidence            45678999999999988888653 4432      33345567888888887654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.45  E-value=7.2e-07  Score=74.86  Aligned_cols=83  Identities=13%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc--------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS--------------------  128 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~--------------------  128 (347)
                      ..++|.|||+    ||++ |+...|+++++++.|..         .++.+..+++++.++                    
T Consensus        36 k~vll~F~a~----wC~~-C~~~~~~l~~l~~~~~~---------~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~  101 (152)
T 2lrt_A           36 KVVLIDFTVY----NNAM-SAAHNLALRELYNKYAS---------QGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGA  101 (152)
T ss_dssp             SEEEEEEECT----TCHH-HHHHHHHHHHHHHHHGG---------GTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGG
T ss_pred             CEEEEEEEcC----CChh-hHHHHHHHHHHHHHhcc---------CCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCc
Confidence            3689999998    9999 89999999999998842         248888888886543                    


Q ss_pred             ---hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHH
Q 048343          129 ---SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMAD  172 (347)
Q Consensus       129 ---lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~  172 (347)
                         +.++|+++++|+.+++.++ |...      ..+.+..+.++...
T Consensus       102 ~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~e~~~~  141 (152)
T 2lrt_A          102 YSSYISLYNVTNLPSVFLVNRN-NELS------ARGENIKDLDEAIK  141 (152)
T ss_dssp             GCHHHHHHTCCSCSEEEEEETT-TEEE------EETTTCSCHHHHHH
T ss_pred             chHHHHHcCcccCceEEEECCC-CeEE------EecCCHHHHHHHHH
Confidence               8899999999999999764 4442      33344455444433

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.80  E-value=2.7e-08  Score=81.70  Aligned_cols=69  Identities=16%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-----------------------
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-----------------------  126 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-----------------------  126 (347)
                      .++|.|+|+    ||++ |+...|+++++++.+...       ++++.+..+++++.                       
T Consensus        28 ~vll~F~a~----wC~~-C~~~~~~l~~~~~~~~~~-------~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~   95 (143)
T 2lus_A           28 IIGFYFSAH----WCPP-CRGFTPILADMYSELVDD-------SAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSG   95 (143)
Confidence            588999998    8999 899999999999887421       23456666666644                       


Q ss_pred             --cchHhHcCCCCCceEEEEcCCCCCC
Q 048343          127 --QSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       127 --~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                        .++.++|+++++|+++++.++ |..
T Consensus        96 ~~~~~~~~~~v~~~P~~~lid~~-G~i  121 (143)
T 2lus_A           96 PASNVTAKYGITGIPALVIVKKD-GTL  121 (143)
Confidence              478999999999999999864 554

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.41  E-value=6.3e-07  Score=77.85  Aligned_cols=94  Identities=13%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-------------------------
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-------------------------  124 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-------------------------  124 (347)
                      .++|.|+|+    ||++ |+...|+++++++.|..         .++.|..++++                         
T Consensus        48 ~vlv~F~a~----~C~~-C~~~~~~l~~l~~~~~~---------~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~  113 (196)
T 2ywi_A           48 ATVIMFICN----HCPF-VKHVQHELVRLANDYMP---------KGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFP  113 (196)
T ss_dssp             EEEEEECCS----SCHH-HHHHHHHHHHHHHHHGG---------GTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSC
T ss_pred             eEEEEEeCC----CCcc-HHHHHHHHHHHHHHHHh---------CCcEEEEEECCccccccccCHHHHHHHHHHcCCCce
Confidence            489999998    8999 89999999999998842         24777888873                         


Q ss_pred             ----CCcchHhHcCCCCCceEEEEcCCCCCCCCcccccc---c-cccccCHHHHHHHHHhhcC
Q 048343          125 ----ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME---Q-GDFARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ----~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~---~-~~~~~~a~~l~~fi~~~t~  179 (347)
                          ++.++.++|++.++|+++++.++ |... .....+   . +.+..+.+++.+.|++.+.
T Consensus       114 ~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~-~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          114 YLYDETQEVAKAYDAACTPDFYIFDRD-LKCV-YRGQLDDSRPNNGIPVTGESIRAALDALLE  174 (196)
T ss_dssp             EEECSSCHHHHHHTCCEESEEEEEETT-CBEE-EEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred             EEECCchHHHHHhCCCCCCeEEEEcCC-CeEE-EccccCcccccccCccCHHHHHHHHHHHHc
Confidence                45679999999999999999764 4432 000000   0 2344567888888877654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.41  E-value=1.3e-07  Score=74.69  Aligned_cols=80  Identities=8%  Similarity=0.117  Sum_probs=59.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc--CCcchHhHcCCCCCceEEEEc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK--ESQSSFALFAVNSLPHIRLVG  145 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~--~~~~lf~~~~I~svP~l~~fp  145 (347)
                      +...+++||++    ||++ |++++|.+++++              .++-|.++|++  +++++.+++| +++|+++  .
T Consensus        15 ~~~~v~~f~~~----~C~~-C~~~~~~L~~l~--------------~~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~   72 (100)
T 1wjk_A           15 ALPVLTLFTKA----PCPL-CDEAKEVLQPYK--------------DRFILQEVDITLPENSTWYERYK-FDIPVFH--L   72 (100)
T ss_dssp             CCCEEEEEECS----SCHH-HHHHHHHTSTTS--------------SSSEEEEEETTSSTTHHHHHHSS-SSCSEEE--E
T ss_pred             CCCEEEEEeCC----CCcc-hHHHHHHHHHhh--------------hCCeEEEEECCCcchHHHHHHHC-CCCCEEE--E
Confidence            44678899998    8999 799988876543              23889999999  7789999999 9999874  3


Q ss_pred             CCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      .  |+.       . ..++.+.++|.++|++...
T Consensus        73 ~--g~~-------~-~~~g~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           73 N--GQF-------L-MMHRVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             S--SSE-------E-EESSCCHHHHHHHHHSSSC
T ss_pred             C--CEE-------E-EecCCCHHHHHHHHHHHHh
Confidence            2  222       0 1234678899999987553

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.39  E-value=8.4e-08  Score=72.07  Aligned_cols=58  Identities=9%  Similarity=-0.013  Sum_probs=45.5

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-CCcchHhHcCCCCCceEEE
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-ESQSSFALFAVNSLPHIRL  143 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-~~~~lf~~~~I~svP~l~~  143 (347)
                      .+++||++    ||++ |+.+.|.++++++++          +.++.+..+|.+ +.+++.+++|++++|++++
T Consensus         3 ~~~~f~~~----~C~~-C~~~~~~l~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i   61 (80)
T 2k8s_A            3 SKAIFYHA----GCPV-CVSAEQAVANAIDPS----------KYTVEIVHLGTDKARIAEAEKAGVKSVPALVI   61 (80)
T ss_dssp             EEEEEEEC----SCHH-HHHHHHHHHHHSCTT----------TEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE
T ss_pred             ceEEEeCC----CCCc-hHHHHHHHHHHHHhc----------CCeEEEEEecCChhhHHHHHHcCCCcCCEEEE
Confidence            46789998    8999 899999999876543          224556666655 4678899999999999987

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.38  E-value=6.3e-07  Score=73.92  Aligned_cols=86  Identities=10%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC--------------------
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES--------------------  126 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--------------------  126 (347)
                      ++..++|.|||+    ||++ |+...|+++++.+.|.         ++++.|..+++|++                    
T Consensus        31 ~gk~vll~F~a~----wC~~-C~~~~~~l~~l~~~~~---------~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~   96 (143)
T 4fo5_A           31 LGRYTLLNFWAA----YDAE-SRARNVQLANEVNKFG---------PDKIAMCSISMDEKESIFTETVKIDKLDLSTQFH   96 (143)
T ss_dssp             SCCEEEEEEECT----TCHH-HHHHHHHHHHHHTTSC---------TTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEE
T ss_pred             CCCEEEEEEEcC----cCHH-HHHHHHHHHHHHHHhC---------cCCEEEEEEEccCCHHHHHHHHHHhCCCCceeee
Confidence            445799999999    8999 8999999999987763         23577777777643                    


Q ss_pred             ------cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          127 ------QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       127 ------~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                            .++.+.|+++++|+.+++.++ |...      ..   ....+++.+.+++
T Consensus        97 d~~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~---~~~~~~l~~~l~~  142 (143)
T 4fo5_A           97 EGLGKESELYKKYDLRKGFKNFLINDE-GVII------AA---NVTPEKLTEILKA  142 (143)
T ss_dssp             CTTGGGSHHHHHTTGGGCCCEEEECTT-SBEE------EE---SCCHHHHHHHHTC
T ss_pred             cccccchHHHHHcCCCCCCcEEEECCC-CEEE------Ec---cCCHHHHHHHHHh
Confidence                  357789999999999999864 4432      11   1246677666643

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=1.9e-06  Score=71.61  Aligned_cols=87  Identities=11%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             CceEEEEEecCCCCCCChh--hcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc------------------
Q 048343           68 PYSILIFFDAHQLHNKPEL--HLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ------------------  127 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~--cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~------------------  127 (347)
                      +..++|.|||+    ||++  | +...|+++++++.|.+        +.++.|..+++|+.+                  
T Consensus        33 gk~vll~F~a~----~C~~v~C-~~~~~~l~~l~~~~~~--------~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~   99 (150)
T 3fw2_A           33 QKSLLINFWAS----WNDSISQ-KQSNSELREIYKKYKK--------NKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVC   99 (150)
T ss_dssp             TSEEEEEEECT----TCCCHHH-HHHHHHHHHHHHHHTT--------CSSEEEEEEECCSCHHHHHHHHHHTTCCSEEEC
T ss_pred             CCEEEEEEEeC----CCCchHH-HHHHHHHHHHHHHhcc--------CCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence            34799999998    8999  8 9999999999998722        235888888888653                  


Q ss_pred             -------chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          128 -------SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       128 -------~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                             ++.+.|+++++|+.+++.++ |...      ..+   .+.+++.+.|++.
T Consensus       100 d~~~~~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~---~~~~~l~~~l~~l  146 (150)
T 3fw2_A          100 DFGGLNSEVAKQYSIYKIPANILLSSD-GKIL------AKN---LRGEELKKKIENI  146 (150)
T ss_dssp             CSCGGGCHHHHHTTCCSSSEEEEECTT-SBEE------EES---CCHHHHHHHHHHH
T ss_pred             cCcccchHHHHHcCCCccCeEEEECCC-CEEE------Ecc---CCHHHHHHHHHHH
Confidence                   78999999999999999764 4442      111   2567777777654

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.37  E-value=1.4e-06  Score=75.03  Aligned_cols=92  Identities=9%  Similarity=0.014  Sum_probs=66.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-----cchHhHcCCC------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-----QSSFALFAVN------  136 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-----~~lf~~~~I~------  136 (347)
                      +..++|.||++    ||++ |+...|+++++++.+.         ++++.+..+++++.     ++..++++++      
T Consensus        60 gk~vll~F~a~----~C~~-C~~~~~~l~~l~~~~~---------~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~  125 (186)
T 1jfu_A           60 GKTLLVNLWAT----WCVP-CRKEMPALDELQGKLS---------GPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFN  125 (186)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHC---------BTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEE
T ss_pred             CCEEEEEEEeC----CCHh-HHHHHHHHHHHHHHhc---------cCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEE
Confidence            44789999998    8999 8999999999998873         23577777777754     3567777775      


Q ss_pred             -----------------CCceEEEEcCCCCCCCCccccccccccc--cCHHHHHHHHHhhcCC
Q 048343          137 -----------------SLPHIRLVGPDAKSLKDDSVQMEQGDFA--RMAESMADFVQSRTKL  180 (347)
Q Consensus       137 -----------------svP~l~~fpp~~g~~~~~~~~~~~~~~~--~~a~~l~~fi~~~t~~  180 (347)
                                       ++|+.+++.++ |+..      ..+.+.  .+.+++.++|++.++.
T Consensus       126 d~~~~~~~~~~~~~~~~~~P~~~lid~~-G~i~------~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          126 DQKAKVFQDLKAIGRALGMPTSVLVDPQ-GCEI------ATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             CTTCHHHHHHHTTTCCSSSSEEEEECTT-SBEE------EEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             CCcchHHHHhccccccCCCCEEEEECCC-CCEE------EEEecCCccCHHHHHHHHHHHhcc
Confidence                             89999999764 4442      222332  3468888888887653

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.36  E-value=1.3e-06  Score=75.40  Aligned_cols=96  Identities=9%  Similarity=0.106  Sum_probs=68.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc------------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF------------------------  123 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~------------------------  123 (347)
                      ...++|.|+|+    ||++ |+...|+++++++.+.         ++ +.|..++.                        
T Consensus        33 gk~vlv~F~a~----~C~~-C~~~~~~l~~l~~~~~---------~~-~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~   97 (188)
T 2cvb_A           33 EPLLAVVFMCN----HCPY-VKGSIGELVALAERYR---------GK-VAFVGINANDYEKYPEDAPEKMAAFAEEHGIF   97 (188)
T ss_dssp             SSEEEEEEECS----SCHH-HHTTHHHHHHHHHHTT---------TT-EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEECC----CCcc-HHHHHHHHHHHHHHhh---------cC-eEEEEEEcCccccccccCHHHHHHHHHHhCCC
Confidence            34799999998    8999 7999999999998872         23 88888887                        


Q ss_pred             -----cCCcchHhHcCCCCCceEEEEcCCCCCCCCcccccc---ccccccCHHHHHHHHHhhcCC
Q 048343          124 -----KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME---QGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       124 -----~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~---~~~~~~~a~~l~~fi~~~t~~  180 (347)
                           |++.++.+.|++.++|+++++.++ |... .....+   .+.+..+.+++.+.|++.+..
T Consensus        98 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~-~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~  160 (188)
T 2cvb_A           98 FPYLLDETQEVAKAYRALRTPEVFLFDER-RLLR-YHGRVNDNPKDPSKVQSHDLEAAIEALLRG  160 (188)
T ss_dssp             SCEEECSSSHHHHHTTCCEESEEEEECTT-CBEE-EEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             ceEEECCcchHHHHcCCCCCCeEEEECCC-CcEE-EEEecCCccccccccCHHHHHHHHHHHHcC
Confidence                 345679999999999999999764 4432 000000   012234567788888776653

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.32  E-value=1.2e-06  Score=74.74  Aligned_cols=104  Identities=11%  Similarity=0.062  Sum_probs=74.5

Q ss_pred             hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccC--Cc
Q 048343           53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQ  127 (347)
Q Consensus        53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~  127 (347)
                      ..+|++.+. ....++..++|.|+++    ||.. |++|+.+.   .+|++...          ++..+.++|.++  ++
T Consensus        28 ~~~~~~Al~-~Ak~~~K~vlvd~~a~----wC~~-C~~me~~vf~d~~V~~~l~----------~~fv~v~~d~~~~~~~   91 (153)
T 2dlx_A           28 KGSFETAKE-CGQMQNKWLMINIQNV----QDFA-CQCLNRDVWSNEAVKNIIR----------EHFIFWQVYHDSEEGQ   91 (153)
T ss_dssp             CSCHHHHHH-HHHHHTCEEEEEEECS----CTTT-HHHHHHHTTTCHHHHHHHH----------HTEEEEEEESSSHHHH
T ss_pred             ccCHHHHHH-HHHHcCCeEEEEEECC----CCHh-HHHHHHHhcCCHHHHHHHH----------cCeEEEEEecCCHhHH
Confidence            356777652 1222356899999998    8999 79998765   56665442          257899999976  35


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++.++|++.+.|+++++.|..|+..      ....+ .+++++.++|++.+.
T Consensus        92 ~l~~~y~v~~~P~~~fld~~~G~~l------~~~~g-~~~~~fl~~L~~~l~  136 (153)
T 2dlx_A           92 RYIQFYKLGDFPYVSILDPRTGQKL------VEWHQ-LDVSSFLDQVTGFLG  136 (153)
T ss_dssp             HHHHHHTCCSSSEEEEECTTTCCCC------EEESS-CCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEEeCCCCcEe------eecCC-CCHHHHHHHHHHHHH
Confidence            7899999999999999988534332      22233 789999888876543

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.32  E-value=1.8e-06  Score=83.43  Aligned_cols=91  Identities=11%  Similarity=-0.035  Sum_probs=69.4

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc----------------------
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK----------------------  124 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~----------------------  124 (347)
                      +...++|.|||+    ||++ |++..|+++++++.|..         .++.|..++++                      
T Consensus        81 ~GK~vLl~F~at----wC~~-C~~~~p~L~~l~~~~~~---------~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~f  146 (352)
T 2hyx_A           81 RGKVVLIDFWAY----SCIN-CQRAIPHVVGWYQAYKD---------SGLAVIGVHTPEYAFEKVPGNVAKGAANLGISY  146 (352)
T ss_dssp             TTSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHGG---------GTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCS
T ss_pred             CCCEEEEEEECC----CChh-HHHHHHHHHHHHHHhhc---------CCeEEEEEECCcccccCCHHHHHHHHHHcCCCc
Confidence            345799999998    8999 89999999999998842         24777777654                      


Q ss_pred             -----CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 -----ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 -----~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                           ++.++.++|+++++|+++++.++ |+..      ..+.+..+.+++.++|++.+
T Consensus       147 pv~~D~~~~l~~~ygV~~~Pt~~lID~~-G~Iv------~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          147 PIALDNNYATWTNYRNRYWPAEYLIDAT-GTVR------HIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             CEEECTTSHHHHHTTCCEESEEEEECTT-SBEE------EEEESBCCHHHHHHHHHHHH
T ss_pred             cEEeCCcHHHHHHcCCCccCEEEEEeCC-CeEE------EEEcCCCCHHHHHHHHHHHH
Confidence                 34679999999999999999654 4442      33344566788888887654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.27  E-value=1.9e-06  Score=74.15  Aligned_cols=85  Identities=7%  Similarity=-0.047  Sum_probs=61.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-----------------------cC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-----------------------KE  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-----------------------~~  125 (347)
                      ..++|.||++    ||++ |+...|+++++++.             ++.|..+++                       |.
T Consensus        59 k~vll~F~a~----~C~~-C~~~~~~l~~l~~~-------------~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~  120 (176)
T 3kh7_A           59 KPALVNVWGT----WCPS-CRVEHPELTRLAEQ-------------GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDA  120 (176)
T ss_dssp             SCEEEEEECT----TCHH-HHHHHHHHHHHHHT-------------TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEET
T ss_pred             CEEEEEEECC----cCHH-HHHHHHHHHHHHHC-------------CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECC
Confidence            4689999998    8999 79999999987653             244444443                       44


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +.++.+.|++.++|+.+++.++ |...      ..+.+..+.+++.++|.+.+
T Consensus       121 ~~~~~~~~~v~~~P~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          121 DGTLGLDLGVYGAPETYLIDKQ-GIIR------HKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             TCHHHHHHTCCSSCEEEEECTT-CBEE------EEEESCCCHHHHHHHTHHHH
T ss_pred             cchHHHHcCCCCCCeEEEECCC-CeEE------EEEcCCCCHHHHHHHHHHHH
Confidence            5678999999999999998764 4442      33345567777777776654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.26  E-value=8.5e-07  Score=66.62  Aligned_cols=55  Identities=9%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcC--CCCCceEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFA--VNSLPHIR  142 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~--I~svP~l~  142 (347)
                      ++.|+++    ||++ |+.++|.+++++..+           .++-|..+|+++++    ++.++++  ++++|+++
T Consensus         3 v~~f~~~----~C~~-C~~~~~~l~~l~~~~-----------~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~   63 (85)
T 1ego_A            3 TVIFGRS----GCPY-CVRAKDLAEKLSNER-----------DDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF   63 (85)
T ss_dssp             EEEECCT----TSTH-HHHHHHHHHHHHHHH-----------SSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE
T ss_pred             EEEEeCC----CCCC-HHHHHHHHHHHHhcC-----------CCceEEEEecccChHHHHHHHHHhCCCCceeCeEE
Confidence            6778998    8999 899999999998764           14889999998654    7888999  99999984

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.21  E-value=6.2e-06  Score=73.66  Aligned_cols=95  Identities=15%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-------------------------
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-------------------------  124 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-------------------------  124 (347)
                      .+||.|||+    ||++ |+...|+++++++.|..         .++.|..++.+                         
T Consensus        61 ~vll~F~a~----~C~~-C~~~~~~l~~l~~~~~~---------~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~  126 (218)
T 3u5r_E           61 ALLVAFISN----RCPF-VVLIREALAKFAGDYAG---------QGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFP  126 (218)
T ss_dssp             EEEEEECCS----SCHH-HHTTHHHHHHHHHHHTT---------TTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSC
T ss_pred             eEEEEEECC----CCcc-HHHHHHHHHHHHHHHHh---------CCcEEEEEECCcccccccCCHHHHHHHHHHhCCCcc
Confidence            589999998    8999 89999999999999832         34888888884                         


Q ss_pred             ----CCcchHhHcCCCCCceEEEEcCCCCCCCCcccccc----ccccccCHHHHHHHHHhhcCC
Q 048343          125 ----ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQME----QGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       125 ----~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~----~~~~~~~a~~l~~fi~~~t~~  180 (347)
                          ++.++.+.|+++++|+++++.++ |... .....+    ...+..+.+++.+.|++.+..
T Consensus       127 ~l~D~~~~~~~~~~v~~~P~~~liD~~-G~i~-~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~  188 (218)
T 3u5r_E          127 YLKDASQSVAKAYGAACTPDFFLYDRE-RRLV-YHGQFDDARPGNGKDVTGADLRAAVDAVLKG  188 (218)
T ss_dssp             EEECTTCHHHHHHTCCEESEEEEECTT-CBEE-EEECSSSCCTTSCCCCCCHHHHHHHHHHHTT
T ss_pred             EEECCccHHHHHcCCCCCCeEEEECCC-CcEE-EeccccccccccccccCHHHHHHHHHHHHcC
Confidence                45689999999999999999764 4432 000110    011234567888888876653

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.19  E-value=8.2e-06  Score=68.87  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=67.5

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      ...++|.|+++    ||++-|+...|+++++++.+.+..     ..+++.|..+++|..                     
T Consensus        26 gk~vll~F~~~----~C~~~C~~~~~~l~~l~~~~~~~~-----~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l   96 (171)
T 2rli_A           26 GQWVLMYFGFT----HCPDICPDELEKLVQVVRQLEAEP-----GLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGL   96 (171)
T ss_dssp             TSEEEEEEECT----TCSSSHHHHHHHHHHHHHHHHHST-----TSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEE
T ss_pred             CCEEEEEEEcC----CCCchhHHHHHHHHHHHHHHhhcc-----CCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEE
Confidence            34799999999    899514999999999999985420     123677777777631                     


Q ss_pred             -------cchHhHcCCCCCc---------------eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          127 -------QSSFALFAVNSLP---------------HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       127 -------~~lf~~~~I~svP---------------~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                             .++.+.|++...|               +.+++.+. |...      ..+.+..+.+++.+.|++.+
T Consensus        97 ~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A           97 TGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPD-GLFT------DYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             ECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTT-SCEE------EEEESSCCHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCC-CeEE------EEECCCCCHHHHHHHHHHHH
Confidence                   1578899999888               77887654 4543      23345567888888887654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.19  E-value=4.5e-07  Score=72.31  Aligned_cols=88  Identities=7%  Similarity=0.056  Sum_probs=55.6

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-----cc
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-----QS  128 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-----~~  128 (347)
                      +.+++++   ++   ..+++ ||++    ||++ |+.+.|.+++++.              +..+..+|.++.     ++
T Consensus        11 ~~~~~~~---~~---~~vv~-f~a~----~C~~-C~~~~~~l~~~~~--------------~~~~v~v~~~~~~~~~~~~   64 (116)
T 2e7p_A           11 KKAKELA---SS---APVVV-FSKT----YCGY-CNRVKQLLTQVGA--------------SYKVVELDELSDGSQLQSA   64 (116)
T ss_dssp             HHHHHHH---TS---SSEEE-EECT----TCHH-HHHHHHHHHHHTC--------------CCEEEEGGGSTTHHHHHHH
T ss_pred             HHHHHHH---cC---CCEEE-EECC----CChh-HHHHHHHHHHcCC--------------CeEEEEccCCCChHHHHHH
Confidence            4456665   33   13444 9998    8999 8999999887642              234555555444     46


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCcccccccccccc---CHHHHHHHHHhh
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFAR---MAESMADFVQSR  177 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~---~a~~l~~fi~~~  177 (347)
                      +.++++++++|++  |..  |+..      ..+++..   +.+++.++|++.
T Consensus        65 l~~~~~v~~~Pt~--~~~--g~~v------~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           65 LAHWTGRGTVPNV--FIG--GKQI------GGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHHSCCSSCEE--EET--TEEE------ECHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHhCCCCcCEE--EEC--CEEE------CChHHHHHHHhCChHHHHHHHc
Confidence            8999999999999  333  3332      1122211   445688888764

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.18  E-value=7.1e-06  Score=68.66  Aligned_cols=94  Identities=14%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----------------------  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----------------------  126 (347)
                      ..++|.|+++    ||++.|+...|+++++.+.+.+..     ..+++.+..+++|..                      
T Consensus        24 k~vll~f~~~----~C~~~C~~~~~~l~~l~~~~~~~~-----~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~   94 (164)
T 2ggt_A           24 QWLLIYFGFT----HCPDVCPEELEKMIQVVDEIDSIT-----TLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLT   94 (164)
T ss_dssp             CEEEEEEECT----TCSSHHHHHHHHHHHHHHHHHHSS-----SSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEE
T ss_pred             CEEEEEEEeC----CCCchhHHHHHHHHHHHHHHhhcc-----CCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEe
Confidence            3789999998    899515999999999999885421     113567777776642                      


Q ss_pred             ------cchHhHcCCCCCc---------------eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          127 ------QSSFALFAVNSLP---------------HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       127 ------~~lf~~~~I~svP---------------~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                            .++.+.|++...|               +.+++.++ |...      ..+.+..+.+++.+.|++.+
T Consensus        95 ~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~-G~i~------~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A           95 GTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPD-GEFL------DYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             CCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTT-SCEE------EEEETTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCC-CeEE------EEeCCCCCHHHHHHHHHHHH
Confidence                  1478899999999               77777664 4543      33345567888888887754

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.46  E-value=2.4e-07  Score=77.77  Aligned_cols=89  Identities=11%  Similarity=0.066  Sum_probs=58.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHH-HHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcC------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSL-VASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFA------------  134 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~-vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~------------  134 (347)
                      +..++|.|||+    ||++ |++..|++++ +.+.+..        ++++.++.+|+++.++..+++.            
T Consensus        33 gk~vll~f~a~----~C~~-C~~~~~~l~~~l~~~~~~--------~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d   99 (159)
T 2ls5_A           33 GKVVMLQFTAS----WCGV-CRKEMPFIEKDIWLKHKD--------NADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLD   99 (159)
Confidence            34689999998    8999 8999999998 8877631        2357777888776654333333            


Q ss_pred             ------------CCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          135 ------------VNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       135 ------------I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                                  +.++|+++++.++ |+..      ..+.+ .+.+++.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~P~~~lid~~-G~i~------~~~~g-~~~~~l~~~l~~l  146 (159)
T 2ls5_A          100 PGADIFAKYALRDAGITRNVLIDRE-GKIV------KLTRL-YNEEEFASLVQQI  146 (159)
Confidence                        5779999999654 4442      12222 3444555555543

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.14  E-value=6.2e-06  Score=69.61  Aligned_cols=67  Identities=6%  Similarity=0.015  Sum_probs=55.1

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc---------------------CCc
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK---------------------ESQ  127 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~---------------------~~~  127 (347)
                      .++|.|| |+    ||++ |+...|+++++++.|.+         .++.|..++.|                     .+.
T Consensus        31 ~vvl~F~~a~----~C~~-C~~~~~~l~~~~~~~~~---------~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~   96 (161)
T 3drn_A           31 NIVLYFYPKD----DTPG-STREASAFRDNWDLLKD---------YDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDK   96 (161)
T ss_dssp             EEEEEECSCT----TCHH-HHHHHHHHHHTHHHHHT---------TCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTS
T ss_pred             CEEEEEEcCC----CCCc-hHHHHHHHHHHHHHHHH---------cCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcH
Confidence            4889999 88    8999 89999999999998842         24677777776                     567


Q ss_pred             chHhHcCCCC----CceEEEEcCCCCCC
Q 048343          128 SSFALFAVNS----LPHIRLVGPDAKSL  151 (347)
Q Consensus       128 ~lf~~~~I~s----vP~l~~fpp~~g~~  151 (347)
                      ++.+.|++.+    +|+.+++.++ |..
T Consensus        97 ~~~~~~~v~~~~~~~P~~~lid~~-G~i  123 (161)
T 3drn_A           97 KIRELYGAKGFILPARITFVIDKK-GII  123 (161)
T ss_dssp             HHHHHTTCCCSSSCCCEEEEECTT-SBE
T ss_pred             HHHHHcCCCCcCcccceEEEECCC-CEE
Confidence            8999999999    9999999764 554

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.11  E-value=6.7e-06  Score=71.81  Aligned_cols=103  Identities=10%  Similarity=0.026  Sum_probs=68.1

Q ss_pred             CceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------------------
Q 048343           68 PYSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------------------  125 (347)
Q Consensus        68 ~y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------------------  125 (347)
                      ...++|.|+ |+    ||++ |+...|+++++++.|..         .++.|..+++|.                     
T Consensus        45 gk~vvl~F~~a~----~C~~-C~~~~~~l~~l~~~~~~---------~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~  110 (195)
T 2bmx_A           45 GKWRVVFFWPKD----FTFV-CPTEIAAFSKLNDEFED---------RDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPM  110 (195)
T ss_dssp             TCEEEEEECSCT----TSCC-CHHHHHHHHHTHHHHHT---------TTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCE
T ss_pred             CCcEEEEEEcCC----CCCC-cHHHHHHHHHHHHHHHH---------CCCEEEEEECCCHHHHHHHHHHhccccCCceeE
Confidence            347899999 88    8999 89999999999998842         246666666653                     


Q ss_pred             ----CcchHhHcCCC-----CCceEEEEcCCCCCCCCcccccc-ccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          126 ----SQSSFALFAVN-----SLPHIRLVGPDAKSLKDDSVQME-QGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       126 ----~~~lf~~~~I~-----svP~l~~fpp~~g~~~~~~~~~~-~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                          +.++.+.|++.     ++|+.+++.++ |...   .... ......+.+++.+.|++.....    ..|.+|.
T Consensus       111 ~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~-G~i~---~~~~g~~~~~~~~~~l~~~l~~l~~~~----~~p~~w~  179 (195)
T 2bmx_A          111 LSDIKRELSQAAGVLNADGVADRVTFIVDPN-NEIQ---FVSATAGSVGRNVDEVLRVLDALQSDE----LCASNWR  179 (195)
T ss_dssp             EECTTSHHHHHHTCBCTTSSBCEEEEEECTT-SBEE---EEEEECTTCCCCHHHHHHHHHHHHC-------------
T ss_pred             EeCCchHHHHHhCCcccCCCccceEEEEcCC-CeEE---EEEecCCCCCCCHHHHHHHHHHHhhCC----CcCcccc
Confidence                45788999999     99999999764 5542   1110 0011246889999998876421    2466663

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.11  E-value=3.8e-06  Score=73.51  Aligned_cols=108  Identities=13%  Similarity=0.075  Sum_probs=68.2

Q ss_pred             CceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------------------
Q 048343           68 PYSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------------------  125 (347)
Q Consensus        68 ~y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------------------  125 (347)
                      +..++|.|| |+    ||++ |+...|+++++++.+..         .++.+..++.|+                     
T Consensus        33 gk~vvl~F~~a~----~C~~-C~~~~~~l~~l~~~~~~---------~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~   98 (198)
T 1zof_A           33 KNGVILFFWPKD----FTFV-CPTEIIAFDKRVKDFHE---------KGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVS   98 (198)
T ss_dssp             SSEEEEEECSCT----TCSS-CCTHHHHHHHTHHHHHH---------TTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCS
T ss_pred             CCcEEEEEECCC----CCCc-hHHHHHHHHHHHHHHHH---------cCCEEEEEECCCHHHHHHHHHhhhhcccccCce
Confidence            347899999 88    8999 89999999999998853         245666666553                     


Q ss_pred             -------CcchHhHcCCC-----CCceEEEEcCCCCCCCCcccccc-ccccccCHHHHHHHHHhhcCCCCCcccCCCCch
Q 048343          126 -------SQSSFALFAVN-----SLPHIRLVGPDAKSLKDDSVQME-QGDFARMAESMADFVQSRTKLTVGPIHHPPLLS  192 (347)
Q Consensus       126 -------~~~lf~~~~I~-----svP~l~~fpp~~g~~~~~~~~~~-~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~  192 (347)
                             +.++.+.|++.     ++|+.+++.++ |...   .... ......+.+++.+.|++.....--...-|.||.
T Consensus        99 ~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~-G~i~---~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~~~p~~w~  174 (198)
T 1zof_A           99 FPMVADITKSISRDYDVLFEEAIALRGAFLIDKN-MKVR---HAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWR  174 (198)
T ss_dssp             SCEEECTTSHHHHHTTCEETTTEECEEEEEEETT-TEEE---EEEEESSSCCCHHHHHHHHHHHHHHHHSSCCCCC----
T ss_pred             eEEEECCchHHHHHhCCcccCCcccceEEEECCC-CEEE---EEEecCCCCCCCHHHHHHHHHHHHHhhccCCccCCcCc
Confidence                   45789999999     99999999764 5542   1110 001123577888887765310000233478885


Q ss_pred             h
Q 048343          193 K  193 (347)
Q Consensus       193 ~  193 (347)
                      .
T Consensus       175 ~  175 (198)
T 1zof_A          175 K  175 (198)
T ss_dssp             -
T ss_pred             C
Confidence            5

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.07  E-value=2.1e-05  Score=75.15  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .-|.++|.+|+.++.   +++.+-..++.|..+    +|+. |.++.++++++|+.+..        +.++.|+.+|.++
T Consensus       226 p~v~elt~~~~~~~~---~~~~~~~~~l~f~~~----~~~~-~~~~~~~~~~vA~~~~~--------~~~~~f~~id~~~  289 (350)
T 1sji_A          226 PTLRRLRPEDMFETW---EDDLNGIHIVAFAER----SDPD-GYEFLEILKQVARDNTD--------NPDLSIVWIDPDD  289 (350)
T ss_dssp             CSEEECCTTTHHHHH---HSCSSSEEEEEECCT----TSHH-HHHHHHHHHHHHHHGGG--------CSSCCEEEECGGG
T ss_pred             cchhhcChhhHHHHh---cCCCCCcEEEEEEcC----CCcc-HHHHHHHHHHHHHHhCC--------CCceEEEEECchh
Confidence            459999999999987   443322344557765    7999 79999999999999842        2368899999998


Q ss_pred             CcchH----hHcCCC-CCceEEEEcCCCCCCCCcccc--ccccccccCHHHHHHHHHhhcCCC
Q 048343          126 SQSSF----ALFAVN-SLPHIRLVGPDAKSLKDDSVQ--MEQGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       126 ~~~lf----~~~~I~-svP~l~~fpp~~g~~~~~~~~--~~~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      .+...    +.+|++ +.|++.++.+..+. +   ..  +...++..+++.+.+|+++...-+
T Consensus       290 ~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~-~---~~~~~~~~~~~~~~~~i~~F~~d~~~Gk  348 (350)
T 1sji_A          290 FPLLVAYWEKTFKIDLFKPQIGVVNVTDAD-S---VWMEIPDDDDLPTAEELEDWIEDVLSGK  348 (350)
T ss_dssp             CHHHHHHHHHHCCSCTTSCEEEEEESSSSC-E---EESCSSCCSCCCCHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHhhcCCCccCCcEEEEeccccc-c---cccCCCcccccCCHHHHHHHHHHHhcCc
Confidence            88777    789998 58999999874321 1   11  111134678999999999876543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.03  E-value=1.1e-05  Score=69.66  Aligned_cols=106  Identities=11%  Similarity=0.011  Sum_probs=66.8

Q ss_pred             ceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------
Q 048343           69 YSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------  125 (347)
Q Consensus        69 y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------  125 (347)
                      ..+||.|+ |+    ||++ |+...|+++++++.+.+         .++.+..++.|+                      
T Consensus        32 k~vvl~F~~a~----~C~~-C~~~~~~l~~~~~~~~~---------~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~   97 (187)
T 1we0_A           32 KWSIVVFYPAD----FSFV-CPTELEDVQKEYAELKK---------LGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMI   97 (187)
T ss_dssp             SEEEEEECSCT----TCSS-CTHHHHHHHHHHHHHHH---------TTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEE
T ss_pred             CCEEEEEECCC----CCcc-hHHHHHHHHHHHHHHHH---------cCCEEEEEECCCHHHHHHHHHHhccccCCCceEE
Confidence            47899999 88    8999 89999999999998853         246666666653                      


Q ss_pred             ---CcchHhHcCCC------CCceEEEEcCCCCCCCCccccccc-cccccCHHHHHHHHHhhcCCCC-CcccCCCCch
Q 048343          126 ---SQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQ-GDFARMAESMADFVQSRTKLTV-GPIHHPPLLS  192 (347)
Q Consensus       126 ---~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~-~~~~~~a~~l~~fi~~~t~~~i-~~i~~p~~~~  192 (347)
                         +.++.+.|++.      ++|+.+++.+. |...   ..... ....++.+++.+.|++.....- .....|.+|.
T Consensus        98 ~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~-G~i~---~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~~~~p~~w~  171 (187)
T 1we0_A           98 GDPSQTISRQFDVLNEETGLADRGTFIIDPD-GVIQ---AIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWE  171 (187)
T ss_dssp             ECTTCHHHHHTTCEETTTTEECEEEEEECTT-SBEE---EEEEECTTSCCCTTHHHHHHHHHHHHHTSTTCCC-----
T ss_pred             ECCchHHHHHhCCCcCCCCceeeEEEEECCC-CeEE---EEEecCCCCCCCHHHHHHHHHHHhhhhhCCCcccccccc
Confidence               45789999999      99999999764 5542   11100 0112356677777765432111 1234566663

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.91  E-value=2.8e-05  Score=67.48  Aligned_cols=91  Identities=8%  Similarity=-0.034  Sum_probs=61.5

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-------Cc----chH-hH---
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-------SQ----SSF-AL---  132 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-------~~----~lf-~~---  132 (347)
                      ...++|.|+|+    ||++ |+...|+++++++.+..         .++.+..+++|+       .+    +.. ++   
T Consensus        48 Gk~vll~F~at----wC~~-C~~~~~~l~~l~~~~~~---------~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~  113 (190)
T 2vup_A           48 GSPLLIYNVAS----KCGY-TKGGYETATTLYNKYKS---------QGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKA  113 (190)
T ss_dssp             TSCEEEEEECS----SSTT-HHHHHHHHHHHHHHHGG---------GTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecC----CCCc-cHHHHHHHHHHHHHHhc---------CCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCC
Confidence            34799999998    8999 89999999999998843         246677776652       11    122 12   


Q ss_pred             --------------------------cCCCCCc------eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          133 --------------------------FAVNSLP------HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       133 --------------------------~~I~svP------~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                                                +++.++|      +.+++.+. |...      ..+.+..+.+++.+.|++.+.
T Consensus       114 ~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~-G~i~------~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          114 EFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRD-GVPV------ERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             CSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTT-SCEE------EEECTTCCHHHHHHHHHHHHH
T ss_pred             CeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCC-CcEE------EEECCCCCHHHHHHHHHHHHh
Confidence                                      3778888      77777653 4432      333445667888888877643

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.90  E-value=2.9e-05  Score=65.15  Aligned_cols=42  Identities=12%  Similarity=-0.002  Sum_probs=34.3

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..++|.|||+    ||++ |+...|+++++++.|..         +++.+..++++
T Consensus        32 k~vlv~f~a~----~C~~-C~~~~~~l~~l~~~~~~---------~~~~vv~v~~d   73 (169)
T 2v1m_A           32 HVCLIVNVAC----KCGA-TDKNYRQLQEMHTRLVG---------KGLRILAFPCN   73 (169)
T ss_dssp             SEEEEEEECS----SSTT-HHHHHHHHHHHHHHHGG---------GTEEEEEEECC
T ss_pred             CEEEEEEeec----cCCc-hHHHHHHHHHHHHHhhc---------CCeEEEEEECC
Confidence            3799999998    8999 89999999999998843         24777777765

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.89  E-value=2.9e-05  Score=64.88  Aligned_cols=89  Identities=10%  Similarity=0.034  Sum_probs=61.0

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      .++|.|+ |+    ||++ |+...|+++++++.+.         +.++.+..++.|+                       
T Consensus        38 ~vvl~F~~a~----~C~~-C~~~~~~l~~~~~~~~---------~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~  103 (160)
T 1xvw_A           38 NVLLVFFPLA----FTGI-CQGELDQLRDHLPEFE---------NDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWP  103 (160)
T ss_dssp             EEEEEECSCT----TSSH-HHHHHHHHHHTGGGTS---------SSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTT
T ss_pred             CEEEEEECCC----CCCc-hHHHHHHHHHHHHHHH---------HCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCc
Confidence            5888887 88    8999 7999999998887763         2357777777653                       


Q ss_pred             CcchHhHcCCC----CCc--eEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHh
Q 048343          126 SQSSFALFAVN----SLP--HIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQS  176 (347)
Q Consensus       126 ~~~lf~~~~I~----svP--~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~  176 (347)
                      +.++.+.|++.    ++|  +.+++.++ |...   ... .........+++.+.|++
T Consensus       104 ~~~~~~~~~v~~~~~~~p~~~~~lid~~-G~i~---~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          104 HGAVSQAYGVFNEQAGIANRGTFVVDRS-GIIR---FAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTHHHHHTTCEETTTTEECSEEEEECTT-SBEE---EEEECCTTCCCCHHHHHHHHHH
T ss_pred             ChHHHHHcCCccccCCCeeeeEEEECCC-CeEE---EEEecCCCCCCCHHHHHHHHHH
Confidence            56789999999    999  77777654 4442   111 011112356677776654

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.89  E-value=2.7e-05  Score=66.20  Aligned_cols=89  Identities=13%  Similarity=0.032  Sum_probs=57.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-------CC----cchH-------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-------ES----QSSF-------  130 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-------~~----~~lf-------  130 (347)
                      ..++|.|||+    ||++ |+ ..|+++++++.|..         .++.+..++++       ++    ++..       
T Consensus        33 k~vll~F~a~----wC~~-C~-~~~~l~~l~~~~~~---------~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~   97 (171)
T 3cmi_A           33 KVVLIVNVAS----KCGF-TP-QYKELEALYKRYKD---------EGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVT   97 (171)
T ss_dssp             CEEEEEEEES----SSCC-HH-HHHHHHHHHHHHGG---------GTEEEEEEEECSCC------------------CCC
T ss_pred             CEEEEEEEec----CCCc-ch-hHHHHHHHHHHhcc---------CCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCC
Confidence            3799999998    8999 89 99999999998843         23666666553       10    1111       


Q ss_pred             -----------------------hHcCCCCCc------eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          131 -----------------------ALFAVNSLP------HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       131 -----------------------~~~~I~svP------~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                                             +.+++.++|      +.+++.++ |...      ..+.+..+.+++.+.|++.+.
T Consensus        98 ~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~-G~i~------~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A           98 FPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKK-GKVY------ERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             SCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSS-SCEE------EEECTTSCGGGGHHHHHHHHT
T ss_pred             ceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCC-CCEE------EEeCCCCCHHHHHHHHHHHHH
Confidence                                   247889999      77777654 4442      233344556667777766543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.89  E-value=3.5e-05  Score=69.13  Aligned_cols=99  Identities=11%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             CCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+++|++ +++++++   +.  +-.+||-|.++    |    |+++.|+|+++|+..           +++.|+..   
T Consensus         9 ~~~~~l~s~~~~~~~l---~~--~~v~vVgff~~----~----~~~~~~~f~~~A~~l-----------~~~~F~~t---   61 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFI---AA--TEVAVIGFFQD----L----EIPAVPILHSMVQKF-----------PGVSFGIS---   61 (227)
T ss_dssp             CCCEECCSHHHHHHHH---HT--SSEEEEEECSC----S----CSTHHHHHHHHTTTC-----------TTSEEEEE---
T ss_pred             CCCeeeCCHHHHHHHH---hc--CCeEEEEEecC----C----CchhHHHHHHHHHhC-----------CCceEEEE---
Confidence            35788855 8999987   32  33677788887    3    688999999999875           14777764   


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccc----cccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD----FARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~----~~~~a~~l~~fi~~~t~  179 (347)
                      .+++++++++++. |++.+|++.. +.      ...|+    +++++++|.+||+++.-
T Consensus        62 ~~~~v~~~~~v~~-p~i~lfk~~~-~~------~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (227)
T 4f9z_D           62 TDSEVLTHYNITG-NTICLFRLVD-NE------QLNLEDEDIESIDATKLSRFIEINSL  112 (227)
T ss_dssp             CCHHHHHHTTCCS-SEEEEEETTT-TE------EEEECHHHHHTCCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHcCCCC-CeEEEEEecC-cc------cccccccccCCCCHHHHHHHHHHhCC
Confidence            4678999999998 9999999631 11      12233    36899999999998864

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.88  E-value=3.9e-05  Score=64.46  Aligned_cols=90  Identities=12%  Similarity=0.067  Sum_probs=61.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-------C----cchHh-Hc---
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-------S----QSSFA-LF---  133 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-------~----~~lf~-~~---  133 (347)
                      ..++|.|+|+    ||++ |+...|+++++++.+..         .++.+..+++|+       .    ++..+ ++   
T Consensus        33 k~vll~f~a~----~C~~-C~~~~~~l~~l~~~~~~---------~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
T 2p5q_A           33 KVLLIVNVAS----KCGM-TNSNYAEMNQLYEKYKD---------QGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSE   98 (170)
T ss_dssp             SEEEEEEECS----SSTT-HHHHHHHHHHHHHHHGG---------GTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCC
T ss_pred             CEEEEEEEec----cCCc-cHHHHHHHHHHHHHhcc---------CCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCC
Confidence            4799999998    8999 89999999999998842         247777777752       1    12222 32   


Q ss_pred             --------------------------CC--CCCc---eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          134 --------------------------AV--NSLP---HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       134 --------------------------~I--~svP---~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                                                ++  +++|   +.+++.+. |...      ..+.+..+.+++.+.|++.+.
T Consensus        99 ~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~-G~i~------~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A           99 FPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKD-GQVV------DRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             SCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTT-SCEE------EEECTTSCGGGGHHHHHHHTT
T ss_pred             ceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCC-CCEE------EeeCCCCCHHHHHHHHHHHhh
Confidence                                      45  6788   77777654 4432      233444566778888877654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.87  E-value=7.6e-05  Score=64.64  Aligned_cols=91  Identities=9%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-------C-cc-----------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-------S-QS-----------  128 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-------~-~~-----------  128 (347)
                      ...+||.|||+    ||++ |+...|+++++++.|...         ++.+..+++|+       . .+           
T Consensus        46 Gk~vlv~F~at----wC~~-C~~~~p~l~~l~~~~~~~---------~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~  111 (187)
T 3dwv_A           46 GSPLLIYNVAS----KCGY-TKGGYETATTLYNKYKSQ---------GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKA  111 (187)
T ss_dssp             TSCEEEEEECC----BCSC-CTTHHHHHHHHHHHHGGG---------TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCC
T ss_pred             CCEEEEEEecC----CCCC-cHHHHHHHHHHHHHhhhC---------CeEEEEEECcccCCCCCCCHHHHHHHHHhccCC
Confidence            34699999999    8999 899999999999998532         35555554431       1 11           


Q ss_pred             -----------------hH--------hHcCCCCCc---eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          129 -----------------SF--------ALFAVNSLP---HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       129 -----------------lf--------~~~~I~svP---~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                                       ++        ..+++.++|   +.+++.++ |...      ..+.+..+.+++.+.|++.+.
T Consensus       112 ~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~-G~i~------~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          112 EFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRD-GVPV------ERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             SSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTT-SCEE------EEECTTCCHHHHHHHHHHHC-
T ss_pred             CCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCC-CCEE------EEECCCCCHHHHHHHHHHHHh
Confidence                             11        233566778   88888664 4443      334455678889999888765

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=97.87  E-value=4.6e-05  Score=68.21  Aligned_cols=108  Identities=14%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             ceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------
Q 048343           69 YSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------  125 (347)
Q Consensus        69 y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------  125 (347)
                      ..+||.|+ ++    ||++ |+...|+++++++.|.+.         ++.+..+++|+                      
T Consensus        57 k~vll~F~pa~----~Cp~-C~~~~~~l~~l~~~~~~~---------~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~f  122 (220)
T 1zye_A           57 KYLVLFFYPLD----FTFV-CPTEIIAFSDKASEFHDV---------NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNI  122 (220)
T ss_dssp             SEEEEEECSCT----TCSS-SHHHHHHHHHHHHHHHHT---------TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSS
T ss_pred             CeEEEEEECCC----CCCC-CHHHHHHHHHHHHHHHHC---------CCEEEEEECCCHHHHHHHHHHHHHhCCCcCCce
Confidence            36899999 87    8999 899999999999988531         35555555442                      


Q ss_pred             ------CcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCchh
Q 048343          126 ------SQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSK  193 (347)
Q Consensus       126 ------~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~~  193 (347)
                            ..++.+.|++.      ++|+.+++.+. |...  .........+++.+++.+.|++.....-....-|.||..
T Consensus       123 p~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~-G~I~--~~~~g~~~~~~~~~ell~~l~~l~~~~~~~~~cp~~W~~  199 (220)
T 1zye_A          123 ALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPN-GVIK--HLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVSPANWTP  199 (220)
T ss_dssp             EEEECTTSHHHHHTTCEETTTTEECEEEEEECTT-SBEE--EEEEECTTCCCCHHHHHHHHHHHHHTTC-----------
T ss_pred             EEEECCcHHHHHHhCCeecCCCcccceEEEECCC-CEEE--EEEecCCCCCCCHHHHHHHHHHhhhhcccCCccCCCCCC
Confidence                  45789999999      99999999764 5542  000111122356788888777644221113445777753

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.83  E-value=4.4e-05  Score=67.01  Aligned_cols=90  Identities=11%  Similarity=0.099  Sum_probs=64.5

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      .+||.|+ ++    ||++ |+...|+++++++.|.+         .++.|..++.|.                       
T Consensus        38 ~vvl~F~~~~----~C~~-C~~~~~~l~~l~~~~~~---------~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p  103 (202)
T 1uul_A           38 WLVLFFYPMD----FTFV-CPTEICQFSDRVKEFSD---------IGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIP  103 (202)
T ss_dssp             EEEEEECSCT----TCSH-HHHHHHHHHHTHHHHHT---------TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSC
T ss_pred             eEEEEEECCC----CCCc-CHHHHHHHHHHHHHHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCcee
Confidence            6899999 87    8999 79999999999998842         246666666653                       


Q ss_pred             -----CcchHhHcCCC------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhh
Q 048343          126 -----SQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSR  177 (347)
Q Consensus       126 -----~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~  177 (347)
                           ..++.+.|++.      ++|+.+++.+. |...   ... .....+++.+++.+.|++.
T Consensus       104 ~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~-G~i~---~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A          104 ILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPK-QNLR---QITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             EEECTTCHHHHHHTCEETTTTEECEEEEEECTT-SBEE---EEEEECTTBCCCHHHHHHHHHHH
T ss_pred             EEECCchHHHHHcCCccCCCCceeeEEEEECCC-CEEE---EEEeCCCCCCCCHHHHHHHHHHh
Confidence                 45789999999      99999999764 5542   111 1112235677777777654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.82  E-value=4.7e-05  Score=64.92  Aligned_cols=30  Identities=7%  Similarity=-0.132  Sum_probs=25.3

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      ...+|+.|+++    ||++ |++++|+++++.+.+
T Consensus        22 a~v~i~~f~d~----~Cp~-C~~~~~~l~~l~~~~   51 (175)
T 3gyk_A           22 GDVTVVEFFDY----NCPY-CRRAMAEVQGLVDAD   51 (175)
T ss_dssp             CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEECC----CCcc-HHHHHHHHHHHHHhC
Confidence            34688899998    8999 899999999887753

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.82  E-value=3e-05  Score=69.18  Aligned_cols=94  Identities=9%  Similarity=0.107  Sum_probs=57.9

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHH---h-hhcCCCCC--CC-----------------------CCceE
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASS---F-IANNVDNP--SS-----------------------RGKLF  117 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s---~-~~~~p~~~--~~-----------------------~~~v~  117 (347)
                      +.-.+|+.||++    ||++ |+++.|+++++++.   + ....|...  ++                       ++++-
T Consensus        85 ~~k~~vv~F~d~----~Cp~-C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           85 QEKHVITVFTDI----TCGY-CHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             TCCEEEEEEECT----TCHH-HHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEECC----CCHH-HHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            345789999998    8999 89999999988752   0 00111000  00                       00000


Q ss_pred             --EEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          118 --FCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       118 --F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                        .+..+++++.++.+++||++.|++ ++..  |.         ...|..+.++|.++|++.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~-v~~d--G~---------~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAV-VLSN--GT---------LVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEE-ECTT--SC---------EEESCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEE-EEcC--Ce---------EecCCCCHHHHHHHHHHh
Confidence              012334456688999999999999 4543  22         123456788888888764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.78  E-value=8.4e-05  Score=64.48  Aligned_cols=90  Identities=11%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      .+||.|+ ++    ||++ |+...|+++++++.|.+.         ++.+..++.|+                       
T Consensus        33 ~vvl~F~~a~----~C~~-C~~~~~~l~~~~~~~~~~---------~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~   98 (192)
T 2h01_A           33 YVLLYFYPLD----FTFV-CPSEIIALDKALDSFKER---------NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHT   98 (192)
T ss_dssp             EEEEEECSCS----SCSS-CCHHHHHHHHTHHHHHHT---------TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSE
T ss_pred             eEEEEEECCC----CCCC-CHHHHHHHHHHHHHHHHC---------CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcC
Confidence            6899999 88    8999 899999999999988531         35555555542                       


Q ss_pred             -----CcchHhHcCCC-----CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhh
Q 048343          126 -----SQSSFALFAVN-----SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSR  177 (347)
Q Consensus       126 -----~~~lf~~~~I~-----svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~  177 (347)
                           +.++.+.|++.     ++|+.+++.+. |...   ... .....+++.+++.+.|++.
T Consensus        99 ~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~-G~i~---~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A           99 LISDISKSIARSYDVLFNESVALRAFVLIDKQ-GVVQ---HLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             EEECTTSHHHHHTTCEETTTEECCEEEEECTT-SBEE---EEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             eEECCcHHHHHHhCCcCcCCceeeEEEEEcCC-CEEE---EEEeCCCCCCCCHHHHHHHHHHH
Confidence                 35789999999     99999999764 5542   111 1001134567777777654

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.75  E-value=0.00015  Score=61.02  Aligned_cols=112  Identities=19%  Similarity=0.341  Sum_probs=78.5

Q ss_pred             CeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc--c
Q 048343           47 GVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF--K  124 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~--~  124 (347)
                      -|.++|.+|+.++.   +++.+- .+++|.....    +. -+.+++.++++|+.+          .+++.|+.+|.  +
T Consensus        15 LV~e~t~en~~~~~---~~~~~~-~~l~f~~~~~----~~-~~~~~~~~~~vAk~f----------kgki~Fv~vd~~~~   75 (147)
T 3bj5_A           15 LVIEFTEQTAPKIF---GGEIKT-HILLFLPKSV----SD-YDGKLSNFKTAAESF----------KGKILFAFIDSDHT   75 (147)
T ss_dssp             CEEECCTTTHHHHH---SSSCCE-EEEEECCTTS----SS-HHHHHHHHHHHHHTT----------TTTCEEEEECTTCG
T ss_pred             eeEEeccccHHHHh---cCCCce-EEEEEecCCc----Hh-HHHHHHHHHHHHHHc----------CCceEEEEEecchH
Confidence            49999999999997   454432 2334554321    11 267889999999987          35799999999  5


Q ss_pred             CCcchHhHcCCCC--CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          125 ESQSSFALFAVNS--LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       125 ~~~~lf~~~~I~s--vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +.+.+.+.||++.  +|.+.++..+....+   ..+.  .+..+++.|.+|+++...-++
T Consensus        76 ~~~~~l~~fGl~~~~~P~v~i~~~~~~~~K---y~~~--~~~~t~~~i~~Fv~d~l~GkL  130 (147)
T 3bj5_A           76 DNQRILEFFGLKKEECPAVRLITLEEEMTK---YKPE--SEELTAERITEFCHRFLEGKI  130 (147)
T ss_dssp             GGHHHHHHTTCCGGGCSEEEEEECSSSCEE---ECCS--CCCCCHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHcCCCcccCCEEEEEeccccccc---CCCC--cccCCHHHHHHHHHHHHcCCc
Confidence            5667899999996  999999864111111   1111  235678999999999887665

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.75  E-value=5.9e-05  Score=64.86  Aligned_cols=43  Identities=5%  Similarity=-0.056  Sum_probs=34.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ...++|.|+|+    ||++ |+...|+++++++.|..         +++.+..+++|
T Consensus        47 gk~vll~F~at----wC~~-C~~~~~~l~~l~~~~~~---------~~v~vv~vs~d   89 (183)
T 2obi_A           47 GFVCIVTNVAS----QCGK-TEVNYTQLVDLHARYAE---------CGLRILAFPCN   89 (183)
T ss_dssp             TSEEEEEEECS----SSTT-HHHHHHHHHHHHHHHGG---------GTEEEEEEECC
T ss_pred             CCEEEEEEeCC----CCCC-cHHHHHHHHHHHHHHhc---------CCeEEEEEECC
Confidence            34799999998    8999 89999999999998843         24667777654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.73  E-value=3e-05  Score=65.28  Aligned_cols=90  Identities=9%  Similarity=0.104  Sum_probs=63.6

Q ss_pred             ceEEEEEecCCCCCCCh-hhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           69 YSILIFFDAHQLHNKPE-LHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~-~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      ..++|.|+++    ||+ . |+...|+++++++.+.+.      ..+++.|..+++|..                     
T Consensus        36 k~vll~f~~~----~C~~~-C~~~~~~l~~~~~~~~~~------~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l  104 (172)
T 2k6v_A           36 KVVLLFFGFT----RCPDV-CPTTLLALKRAYEKLPPK------AQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGL  104 (172)
T ss_dssp             SEEEEEEECT----TCSSH-HHHHHHHHHHHHTTSCHH------HHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEE
T ss_pred             CEEEEEEECC----CCcch-hHHHHHHHHHHHHHhhhh------ccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEE
Confidence            4799999999    899 5 599999999998776321      002688888888743                     


Q ss_pred             -------cchHhHcC---------------CCCCceEEEEcCCCCCCCCcccccccccccc--CHHHHHHHHHhh
Q 048343          127 -------QSSFALFA---------------VNSLPHIRLVGPDAKSLKDDSVQMEQGDFAR--MAESMADFVQSR  177 (347)
Q Consensus       127 -------~~lf~~~~---------------I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~--~a~~l~~fi~~~  177 (347)
                             .++.+.|+               ++++|+++++. + |...      ..+.+..  +.+++.+.|++.
T Consensus       105 ~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~-G~i~------~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          105 SGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-E-GRLV------LLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             CCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-T-TEEE------EEECHHHHTCHHHHHHHHHHC
T ss_pred             eCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-C-CEEE------EEECCCCCCCHHHHHHHHHHh
Confidence                   24555555               46899999998 4 5543      2333444  788998888764

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.69  E-value=6.5e-05  Score=64.65  Aligned_cols=43  Identities=5%  Similarity=-0.070  Sum_probs=35.1

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ...++|.|+|+    ||++ |++..|+++++++.|..         .++.+..++++
T Consensus        49 Gk~vlv~F~at----wC~~-C~~~~p~l~~l~~~~~~---------~~v~vv~vs~d   91 (181)
T 2p31_A           49 GSVSLVVNVAS----ECGF-TDQHYRALQQLQRDLGP---------HHFNVLAFPCN   91 (181)
T ss_dssp             TSEEEEEEECS----SSTT-HHHHHHHHHHHHHHHGG---------GTEEEEEEECC
T ss_pred             CCEEEEEEecc----CCCC-cHHHHHHHHHHHHHhhc---------CCEEEEEEECc
Confidence            34799999999    8999 89999999999998843         24777777765

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.67  E-value=0.00014  Score=64.82  Aligned_cols=91  Identities=10%  Similarity=0.069  Sum_probs=62.5

Q ss_pred             ceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-----------------------
Q 048343           69 YSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-----------------------  124 (347)
Q Consensus        69 y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-----------------------  124 (347)
                      ..+||.|| ++    ||++ |+...|+++++++.|.+.         ++.+.-++.|                       
T Consensus        53 k~vvl~F~pa~----~C~~-C~~~~~~l~~l~~~~~~~---------~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~f  118 (213)
T 2i81_A           53 KYVLLYFYPLD----FTFV-CPSEIIALDKALDAFHER---------NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKH  118 (213)
T ss_dssp             CEEEEEECSCT----TSSH-HHHHHHHHHHTHHHHHHT---------TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSS
T ss_pred             CeEEEEEEcCC----CCCC-CHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCc
Confidence            36899999 88    8999 799999999999988531         2444444433                       


Q ss_pred             -----CCcchHhHcCCC-----CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhh
Q 048343          125 -----ESQSSFALFAVN-----SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSR  177 (347)
Q Consensus       125 -----~~~~lf~~~~I~-----svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~  177 (347)
                           .+.++.+.|++.     .+|+.+++.++ |...   ... .....+++.+++.+.|++.
T Consensus       119 p~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~-G~i~---~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          119 TLLSDITKSISKDYNVLFDDSVSLRAFVLIDMN-GIVQ---HLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             EEEECTTSHHHHHTTCEETTTEECEEEEEECTT-SBEE---EEEEECTTCCCCHHHHHHHHHHH
T ss_pred             eEEECCchHHHHHhCCccccCCcccEEEEECCC-CEEE---EEEecCCCCCCCHHHHHHHHHHH
Confidence                 245789999999     99999999774 5542   111 1111235677777777653

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.67  E-value=8.4e-05  Score=66.13  Aligned_cols=94  Identities=9%  Similarity=-0.065  Sum_probs=57.9

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHH---h-hhcCCCCC--C-----------CCCc------------eE
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASS---F-IANNVDNP--S-----------SRGK------------LF  117 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s---~-~~~~p~~~--~-----------~~~~------------v~  117 (347)
                      ..-.+|+.|+++    ||++ |++++|+++++++.   + ...+|-..  +           ..++            +-
T Consensus        85 ~~k~~vv~F~d~----~Cp~-C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~  159 (211)
T 1t3b_A           85 NEKHVVTVFMDI----TCHY-CHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK  159 (211)
T ss_dssp             TCSEEEEEEECT----TCHH-HHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEEEECC----CCHh-HHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence            344688999998    8999 89999999987652   0 00111000  0           0000            00


Q ss_pred             --EEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          118 --FCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       118 --F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                        -+..+++++.++.+++||++.|++++ ..  |+.         ..|..+.++|.++|++.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~n--G~~---------~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          160 EVKTPNIVKKHYELGIQFGVRGTPSIVT-ST--GEL---------IGGYLKPADLLRALEET  209 (211)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC-TT--SCC---------CCSCCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcCCCcCCEEEE-eC--CEE---------ecCCCCHHHHHHHHHhc
Confidence              00123334567899999999999988 43  322         23456788999998753

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.64  E-value=0.00033  Score=67.42  Aligned_cols=130  Identities=13%  Similarity=0.140  Sum_probs=87.7

Q ss_pred             HHHHHHHhc-CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCC
Q 048343           35 SELLNLQSQ-SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSR  113 (347)
Q Consensus        35 ~~L~~l~~~-s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~  113 (347)
                      ++|.+...+ +..-|.++|.+|+.++.   .++..-..+++|...    +|+. |.++.++++++|+.|..        .
T Consensus       216 ~~l~~fi~~~~~p~v~elt~~~~~~~~---~~~~~~~~~~~f~~~----~~~~-~~~~~~~l~~vA~~~~~--------~  279 (367)
T 3us3_A          216 EEIVNFVEEHRRSTLRKLKPESMYETW---EDDMDGIHIVAFAEE----ADPD-GYEFLEILKSVAQDNTD--------N  279 (367)
T ss_dssp             HHHHHHHHHTCSCSEEECCGGGHHHHH---HSCBTTEEEEEECCT----TSHH-HHHHHHHHHHHHHHTTT--------C
T ss_pred             HHHHHHHHHcCccceeecChhhHHHHH---hhccCCcEEEEEEcC----CChh-HHHHHHHHHHHHHHcCC--------C
Confidence            345554432 23359999999998876   222121344556655    6888 79999999999999842        1


Q ss_pred             CceEEEEEEccCCcchH----hHcCCC-CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          114 GKLFFCYLEFKESQSSF----ALFAVN-SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       114 ~~v~F~~vD~~~~~~lf----~~~~I~-svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      +++.|+.+|.++.+...    +.||+. +.|.+.++.+..+...  ...+.......+++.|.+|+++...-++
T Consensus       280 ~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~--~y~~~~~~~~~t~~~i~~F~~~~~~Gkl  351 (367)
T 3us3_A          280 PDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSV--WMEMDDEEDLPSAEELEDWLEDVLEGEI  351 (367)
T ss_dssp             TTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEE--ECCCCTTSCCCCHHHHHHHHHHHHHTSS
T ss_pred             CceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccce--eecCCcccccCCHHHHHHHHHHHHcCCc
Confidence            37999999999877543    458998 8999999987532110  0111110125789999999999877655

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.57  E-value=4.4e-05  Score=59.64  Aligned_cols=65  Identities=9%  Similarity=0.180  Sum_probs=45.4

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-------
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-------  126 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-------  126 (347)
                      +.+++.+   +.    ..+++|+++    ||++ |+.+.|.+++.+..+           ++  |..+|++++       
T Consensus         3 ~~~~~~i---~~----~~v~~f~~~----~C~~-C~~~~~~L~~~~~~~-----------~~--~~~vdi~~~~~~~~~~   57 (105)
T 1kte_A            3 AFVNSKI---QP----GKVVVFIKP----TCPF-CRKTQELLSQLPFKE-----------GL--LEFVDITATSDTNEIQ   57 (105)
T ss_dssp             HHHHHHC---CT----TCEEEEECS----SCHH-HHHHHHHHHHSCBCT-----------TS--EEEEEGGGSTTHHHHH
T ss_pred             hHHHhhc---cc----CCEEEEEcC----CCHh-HHHHHHHHHHcCCCC-----------Cc--cEEEEccCCCCHHHHH
Confidence            4566665   22    236779998    8999 799999888643221           12  566788765       


Q ss_pred             cchHhHcCCCCCceEEE
Q 048343          127 QSSFALFAVNSLPHIRL  143 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~  143 (347)
                      +++.+.+|++++|++++
T Consensus        58 ~~l~~~~g~~~vP~i~~   74 (105)
T 1kte_A           58 DYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             HHHHHHHSCCCSCEEEE
T ss_pred             HHHHHHhCCCCcCeEEE
Confidence            25778899999999843

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.51  E-value=0.0005  Score=58.73  Aligned_cols=93  Identities=11%  Similarity=-0.019  Sum_probs=59.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc----------------------CC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK----------------------ES  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~----------------------~~  126 (347)
                      ..+||.||++|   ||++ |+...|+++++++.  +          ++.|..++.|                      .+
T Consensus        45 k~vvl~F~~t~---~C~~-C~~~~~~l~~l~~~--~----------~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~  108 (175)
T 1xvq_A           45 KSVLLNIFPSV---DTPV-CATSVRTFDERAAA--S----------GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFR  108 (175)
T ss_dssp             SCEEEEECSCC---CSSC-CCHHHHHHHHHHHH--T----------TCEEEEEESSCHHHHTTCC------CEEEEECTT
T ss_pred             CEEEEEEEeCC---CCch-HHHHHHHHHHHHhh--c----------CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCH
Confidence            36899999984   4999 89999999998876  1          2333333333                      13


Q ss_pred             cchHhHcCCCCC---------ceEEEEcCCCCCCCCcccccc--ccccccCHHHHHHHHHhhcCCC
Q 048343          127 QSSFALFAVNSL---------PHIRLVGPDAKSLKDDSVQME--QGDFARMAESMADFVQSRTKLT  181 (347)
Q Consensus       127 ~~lf~~~~I~sv---------P~l~~fpp~~g~~~~~~~~~~--~~~~~~~a~~l~~fi~~~t~~~  181 (347)
                      .++.+.|++...         |+.+++.++ |...   ....  ........+++.+.+.+..|..
T Consensus       109 ~~~~~~~gv~~~~~~~~g~~~p~~~lid~~-G~I~---~~~~g~~~~~~~~~~~~l~~l~~~~~~~  170 (175)
T 1xvq_A          109 DSFGEDYGVTIADGPMAGLLARAIVVIGAD-GNVA---YTELVPEIAQEPNYEAALAALGATSGSH  170 (175)
T ss_dssp             SSHHHHTTCBBCSSTTTTSBCSEEEEECTT-SBEE---EEEECSBTTCCCCHHHHHHHHHHTC---
T ss_pred             HHHHHHhCCcccccccCCcccceEEEECCC-CeEE---EEEECCCcCCCCCHHHHHHHHHhhcCcc
Confidence            578999999887         888888764 5543   1111  1111235677777777766643

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.49  E-value=0.00011  Score=54.29  Aligned_cols=50  Identities=6%  Similarity=0.102  Sum_probs=38.4

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcch---HhHcCCCCCceEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSS---FALFAVNSLPHIR  142 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l---f~~~~I~svP~l~  142 (347)
                      +++|+++    ||++ |+++++.+++.                ++-|..+|++++++.   +++++++++|+++
T Consensus         3 v~~f~~~----~C~~-C~~~~~~l~~~----------------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~   55 (81)
T 1h75_A            3 ITIYTRN----DCVQ-CHATKRAMENR----------------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI   55 (81)
T ss_dssp             EEEEECT----TCHH-HHHHHHHHHHT----------------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE
T ss_pred             EEEEcCC----CChh-HHHHHHHHHHC----------------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE
Confidence            5779998    8999 79988877641                245678999987544   3469999999994

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.49  E-value=0.00041  Score=58.33  Aligned_cols=89  Identities=8%  Similarity=-0.027  Sum_probs=56.5

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-----------------------CC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-----------------------ES  126 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-----------------------~~  126 (347)
                      .++|.|+++|   ||++ |+...|+++++++++ +          ++.|..++.|                       .+
T Consensus        46 ~~vl~F~~~~---~C~~-C~~~~~~l~~l~~~~-~----------~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~  110 (167)
T 2jsy_A           46 VTIISVIPSI---DTGV-CDAQTRRFNEEAAKL-G----------DVNVYTISADLPFAQARWCGANGIDKVETLSDHRD  110 (167)
T ss_dssp             CEEEEECSCS---TTSH-HHHTHHHHHHHHHHH-S----------SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGT
T ss_pred             eEEEEEecCC---CCCc-hHHHHHHHHHHHHHc-C----------CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCch
Confidence            6899999993   4999 899999999999987 2          1233333332                       34


Q ss_pred             cchHhHcCCCC------CceEEEEcCCCCCCCCcccccccc--ccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNS------LPHIRLVGPDAKSLKDDSVQMEQG--DFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~s------vP~l~~fpp~~g~~~~~~~~~~~~--~~~~~a~~l~~fi~~~  177 (347)
                      .++.+.|++..      .|+.+++.+. |...   ......  ....+.+++.+.|++.
T Consensus       111 ~~~~~~~~v~~~~~g~~~p~~~lid~~-G~i~---~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          111 MSFGEAFGVYIKELRLLARSVFVLDEN-GKVV---YAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             CHHHHHTTCBBTTTCSBCCEEEEECTT-SCEE---EEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             hHHHHHhCCccccCCceeeEEEEEcCC-CcEE---EEEecCCcCCCCCHHHHHHHHHHh
Confidence            56778888887      3888888764 4432   111000  1112456677777654

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.47  E-value=0.00023  Score=51.58  Aligned_cols=69  Identities=4%  Similarity=0.026  Sum_probs=48.5

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh---HcCCCCCceEEEEcCCC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA---LFAVNSLPHIRLVGPDA  148 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~---~~~I~svP~l~~fpp~~  148 (347)
                      +++|+++    ||++ |+.+++.+++.                ++-|..+|++++++..+   ++++.++|+++.  .  
T Consensus         3 i~~y~~~----~C~~-C~~~~~~l~~~----------------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~--   57 (75)
T 1r7h_A            3 ITLYTKP----ACVQ-CTATKKALDRA----------------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--D--   57 (75)
T ss_dssp             EEEEECT----TCHH-HHHHHHHHHHT----------------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--T--
T ss_pred             EEEEeCC----CChH-HHHHHHHHHHc----------------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--C--
Confidence            5678888    8999 79888876642                24567789998765544   899999999984  2  


Q ss_pred             CCCCCccccccccccccCHHHHHHHHH
Q 048343          149 KSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       149 g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      |..          -++.+.+++.++++
T Consensus        58 g~~----------~~g~~~~~l~~~l~   74 (75)
T 1r7h_A           58 GEH----------WSGFRPERIKQLQA   74 (75)
T ss_dssp             TEE----------EESCCHHHHHHHHC
T ss_pred             CeE----------EcCCCHHHHHHHHh
Confidence            221          12356777877763

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.47  E-value=0.00046  Score=57.69  Aligned_cols=92  Identities=12%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             eEEEEEec-CCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-------------------cCCcch
Q 048343           70 SILIFFDA-HQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-------------------KESQSS  129 (347)
Q Consensus        70 ~vvV~fTA-~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-------------------~~~~~l  129 (347)
                      .++|.||+ +    ||++ |+.-.|+++++.+.|.+.       +-.+..+.+|-                   |...++
T Consensus        37 ~~vl~F~~~~----~c~~-C~~~~~~l~~~~~~~~~~-------~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~  104 (163)
T 3gkn_A           37 WLVIYFYPKD----STPG-ATTEGLDFNALLPEFDKA-------GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEAL  104 (163)
T ss_dssp             CEEEEECSCT----TSHH-HHHHHHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHH
T ss_pred             cEEEEEeCCC----CCCc-HHHHHHHHHHHHHHHHHC-------CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHH
Confidence            68889998 6    9999 799999999999988532       12344444431                   134477


Q ss_pred             HhHcCCCC------------CceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          130 FALFAVNS------------LPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       130 f~~~~I~s------------vP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .+.|++..            .|+.+++.+. |...   ............+++.+.+++.
T Consensus       105 ~~~~~v~~~~~~~~~~~~~~~p~~~lid~~-G~i~---~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          105 CRAFDVIKEKNMYGKQVLGIERSTFLLSPE-GQVV---QAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             HHHTTCEEEEEETTEEEEEECCEEEEECTT-SCEE---EEECSCCSTTHHHHHHHHHHHH
T ss_pred             HHHhCCccccccccccccCcceEEEEECCC-CeEE---EEEcCCCcccCHHHHHHHHHHH
Confidence            88899987            8999999875 5543   1111111123466777777654

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.46  E-value=0.00019  Score=64.13  Aligned_cols=91  Identities=11%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             CceEEEEEec-CCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC---------------------
Q 048343           68 PYSILIFFDA-HQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE---------------------  125 (347)
Q Consensus        68 ~y~vvV~fTA-~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~---------------------  125 (347)
                      ...+||.||+ +    ||++ |+...|+++++++.|..         .++.|.-+..|.                     
T Consensus        69 Gk~vll~F~a~~----wC~~-C~~~~p~l~~l~~~~~~---------~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~  134 (222)
T 3ztl_A           69 GKYVVLFFYPAD----FTFV-CPTEIIAFSDQVEEFNS---------RNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMK  134 (222)
T ss_dssp             TSEEEEEECSCS----SCSH-HHHHHHHHHHTHHHHHT---------TTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCS
T ss_pred             CCeEEEEEECCC----CCCc-hHHHHHHHHHHHHHHHH---------CCCEEEEEECCCHHHHHHHHHHhhhhccccccc
Confidence            3478999997 6    9999 79999999999998842         235555555542                     


Q ss_pred             -------CcchHhHcCCC------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHh
Q 048343          126 -------SQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQS  176 (347)
Q Consensus       126 -------~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~  176 (347)
                             ..++.+.|++.      .+|+.+++.+. |...   ... .........+++.+.|++
T Consensus       135 ~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~-G~I~---~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          135 IPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPN-GILR---QITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             SCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTT-SEEE---EEEEECTTBCCCHHHHHHHHHH
T ss_pred             eeEEeCCchHHHHHcCCeecCCCCccceEEEECCC-CeEE---EEEecCCCCCCCHHHHHHHHHH
Confidence                   33678899999      89999999764 5542   111 000112346677666654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.46  E-value=0.00016  Score=62.05  Aligned_cols=43  Identities=9%  Similarity=-0.052  Sum_probs=34.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ...++|.|||+    ||++ |+...|+++++++.|..         .++.+..+.++
T Consensus        38 Gk~vlv~F~at----wC~~-C~~~~p~l~~l~~~~~~---------~~~~vi~is~d   80 (180)
T 3kij_A           38 GKVSLVVNVAS----DCQL-TDRNYLGLKELHKEFGP---------SHFSVLAFPCN   80 (180)
T ss_dssp             TSEEEEEEECS----SSTT-HHHHHHHHHHHHHHHTT---------TSEEEEEEECC
T ss_pred             CCEEEEEEEec----CCCC-cHHHHHHHHHHHHHhcc---------CCeEEEEEECC
Confidence            34799999999    8999 89999999999998832         24667777654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.44  E-value=0.00085  Score=56.36  Aligned_cols=44  Identities=9%  Similarity=-0.011  Sum_probs=34.8

Q ss_pred             ceEEEEEecCCCCCCCh-hhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           69 YSILIFFDAHQLHNKPE-LHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~-~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..++|.||++    ||+ + |+...|+++++.+.+...       ++++.+..+++|
T Consensus        34 k~vll~f~~~----~C~~~-C~~~~~~l~~l~~~~~~~-------~~~~~vv~is~d   78 (174)
T 1xzo_A           34 EVWLADFIFT----NCETI-CPPMTAHMTDLQKKLKAE-------NIDVRIISFSVD   78 (174)
T ss_dssp             CCEEEEEECS----CCSSC-CCSHHHHHHHHHHHHHHT-------TCCCEEEEEESC
T ss_pred             CEEEEEEEcC----CCcch-hHHHHHHHHHHHHHhhhc-------CCcEEEEEEEeC
Confidence            3689999999    899 9 899999999999988542       225666677665

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.42  E-value=0.00081  Score=61.06  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             CCeEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+.+|+ .+..++++   +. .+ .++|-|.++    +    |.+..++|.++|+.++          +++.|+.+   
T Consensus         6 P~v~~l~s~~~~~~~l---~~-~~-v~vvgff~~----~----~~~~~~~f~~~A~~lr----------~~~~F~~~---   59 (252)
T 2h8l_A            6 PASVPLRTEEEFKKFI---SD-KD-ASIVGFFDD----S----FSEAHSEFLKAASNLR----------DNYRFAHT---   59 (252)
T ss_dssp             CCEEECCSHHHHHHHH---TS-SS-CEEEEEESC----T----TSHHHHHHHHHHHHTT----------TTSCEEEE---
T ss_pred             CCceeecCHHHHHHHh---hc-CC-eEEEEEECC----C----CChHHHHHHHHHHhcc----------cCcEEEEE---
Confidence            3589996 56778887   33 23 355555555    3    4667899999999873          35677776   


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCcccccccc-ccccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQG-DFARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~-~~~~~a~~l~~fi~~~t~  179 (347)
                      .+++++++++++. |++++|+|+. ......+....| ++..+.++|.+||+++.-
T Consensus        60 ~~~~v~~~~~~~~-p~i~~fk~~~-~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~  113 (252)
T 2h8l_A           60 NVESLVNEYDDNG-EGIILFRPSH-LTNKFEDKTVAYTEQKMTSGKIKKFIQENIF  113 (252)
T ss_dssp             CCHHHHHHHCSSS-EEEEEECCGG-GCCTTSCSEEECCCSSCCHHHHHHHHHHHSS
T ss_pred             ChHHHHHHhCCCC-CcEEEEcchh-hcccccccccccCCCCcCHHHHHHHHHhccc
Confidence            3467999999997 9999999841 111011223455 667799999999998754

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.40  E-value=0.00029  Score=62.46  Aligned_cols=43  Identities=9%  Similarity=-0.126  Sum_probs=34.6

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ...+||.|||+    ||++ |++..|+++++++.|..         ..+.+..++++
T Consensus        47 Gk~vlv~Fwat----wC~~-C~~e~p~l~~l~~~~~~---------~g~~vv~v~~d   89 (208)
T 2f8a_A           47 GKVLLIENVAS----LGGT-TVRDYTQMNELQRRLGP---------RGLVVLGFPCN   89 (208)
T ss_dssp             TSEEEEEEECS----SSTT-HHHHHHHHHHHHHHHGG---------GTEEEEEEECC
T ss_pred             CCEEEEEEECC----CCcc-HHHHHHHHHHHHHHccC---------CCeEEEEEECC
Confidence            34799999999    8999 89999999999998843         24667777665

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.38  E-value=0.00029  Score=63.94  Aligned_cols=87  Identities=13%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-------------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-------------------------  123 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-------------------------  123 (347)
                      -.+|+.|+.+    ||++ |+++.|+++.+.+.            ++|.|...++                         
T Consensus        98 k~~v~~F~D~----~Cp~-C~~~~~~l~~~~~~------------g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~  160 (241)
T 1v58_A           98 PVIVYVFADP----FCPY-CKQFWQQARPWVDS------------GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQ  160 (241)
T ss_dssp             SEEEEEEECT----TCHH-HHHHHHHHHHHHHT------------TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHH
T ss_pred             CeEEEEEECC----CChh-HHHHHHHHHHHHhC------------CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHH
Confidence            3578889998    8999 89999998875542            1344433332                         


Q ss_pred             -------------------------cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          124 -------------------------KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       124 -------------------------~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                                               +++.++.+++|++++|++++...+ |..       ....|..+.+++.++|++..
T Consensus       161 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~-G~~-------~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          161 QYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKE-NTL-------QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             HHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETT-TEE-------EEEESSCCHHHHHHHTTC--
T ss_pred             HHHHHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-CCE-------EEecCCCCHHHHHHHHHHHH
Confidence                                     233467899999999999998532 221       12345567889999887765


Q ss_pred             CC
Q 048343          179 KL  180 (347)
Q Consensus       179 ~~  180 (347)
                      ..
T Consensus       233 ~~  234 (241)
T 1v58_A          233 QH  234 (241)
T ss_dssp             --
T ss_pred             Hh
Confidence            53

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.37  E-value=7.2e-05  Score=59.87  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=41.4

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-------chHhHcCCCCCceEEE
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-------SSFALFAVNSLPHIRL  143 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-------~lf~~~~I~svP~l~~  143 (347)
                      .+++|+++    ||++ |+.+.+.+++.+.           ..++  |..+|+++++       ++.+.+|++++|++++
T Consensus        20 ~vv~f~~~----~Cp~-C~~~~~~L~~~~~-----------~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i   81 (114)
T 2hze_A           20 KVTIFVKY----TCPF-CRNALDILNKFSF-----------KRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF   81 (114)
T ss_dssp             CEEEEECT----TCHH-HHHHHHHHTTSCB-----------CTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             CEEEEEeC----CChh-HHHHHHHHHHcCC-----------CcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            57789998    8999 7998887764321           0122  7789998764       6888999999999854

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.35  E-value=0.00038  Score=59.93  Aligned_cols=42  Identities=5%  Similarity=-0.033  Sum_probs=33.6

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..++|.|+|+    ||++ |+...|+++++++.|..         .++.+..+++|
T Consensus        50 k~vlv~F~at----wC~~-C~~~~~~l~~l~~~~~~---------~~v~vv~is~d   91 (185)
T 2gs3_A           50 FVCIVTNVAS----QGGK-TEVNYTQLVDLHARYAE---------CGLRILAFPCN   91 (185)
T ss_dssp             SEEEEEEECS----SSTT-HHHHHHHHHHHHHHHGG---------GTEEEEEEECC
T ss_pred             CEEEEEEecC----CCCc-hHHHHHHHHHHHHHhhc---------CCeEEEEEECc
Confidence            4789999998    8999 89999999999998843         23666666654

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.22  E-value=0.0011  Score=60.10  Aligned_cols=107  Identities=13%  Similarity=0.054  Sum_probs=73.4

Q ss_pred             CCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      -.|.+|++ +++++++.  ++  +..++|-|.++    +    |.+..++|.++|+.++          +++.|+..   
T Consensus         6 P~v~~l~s~~~~~~~~~--~~--~~v~vVgff~~----~----~~~~~~~F~~~A~~lr----------~~~~F~~t---   60 (250)
T 3ec3_A            6 PPSKEILTLKQVQEFLK--DG--DDVVILGVFQG----V----GDPGYLQYQDAANTLR----------EDYKFHHT---   60 (250)
T ss_dssp             CSSEECCCHHHHHHHHH--HC--SSCEEEEECSC----T----TCHHHHHHHHHHHHHT----------TTCCEEEE---
T ss_pred             CCceecCCHHHHHHHHh--cC--CCeEEEEEEcC----C----CchHHHHHHHHHHhhh----------cCcEEEEE---
Confidence            45889976 78999872  20  22456666665    3    6778999999999874          34667775   


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccc--cccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD--FARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~--~~~~a~~l~~fi~~~t~  179 (347)
                      .+++++++++++. |++++|+|+. ......+....|+  +..+.++|.+||++..-
T Consensus        61 ~~~~v~~~~~v~~-p~ivlfk~~~-~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~  115 (250)
T 3ec3_A           61 FSTEIAKFLKVSL-GKLVLMQPEK-FQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL  115 (250)
T ss_dssp             CCHHHHHHHTCCS-SEEEEECCGG-GCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcHHHHHHcCCCC-CeEEEEecch-hhccccccceeccCCCCCCHHHHHHHHHHcCC
Confidence            3568899999998 9999999842 1100111223344  36789999999998753

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.18  E-value=0.00085  Score=52.04  Aligned_cols=78  Identities=8%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc-----CCCCCceEEEEc
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF-----AVNSLPHIRLVG  145 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~-----~I~svP~l~~fp  145 (347)
                      .|+.||.+    ||+. |++.+.-+++                .++-|-.+|++++++..+.+     |-+++|++++ .
T Consensus         5 ~I~vYs~~----~Cp~-C~~aK~~L~~----------------~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~   62 (92)
T 2lqo_A            5 ALTIYTTS----WCGY-CLRLKTALTA----------------NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-A   62 (92)
T ss_dssp             CEEEEECT----TCSS-HHHHHHHHHH----------------TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-T
T ss_pred             cEEEEcCC----CCHh-HHHHHHHHHh----------------cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-e
Confidence            46778887    8999 6776554332                24678899999876544333     7899999865 3


Q ss_pred             CCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          146 PDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       146 p~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ++  ...          .+.+.+++.++|++..|.+.
T Consensus        63 Dg--~~l----------~~~~~~el~~~L~el~gL~~   87 (92)
T 2lqo_A           63 DG--STL----------TNPSADEVKAKLVKIAGLEH   87 (92)
T ss_dssp             TS--CEE----------ESCCHHHHHHHHHHHHCCSC
T ss_pred             CC--EEE----------eCCCHHHHHHHHHHhcCCcc
Confidence            32  211          13467889999999988754

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=97.18  E-value=0.0028  Score=51.79  Aligned_cols=96  Identities=10%  Similarity=-0.008  Sum_probs=69.9

Q ss_pred             CeEEcC-hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLN-DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~-~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .+.+|+ .+.+++++   +.  +-.+||-|.++    ||.. |   .++|.++|+..           +.+.|+..+-  
T Consensus        22 ~~~~i~s~~e~e~fi---~~--~~v~VVGfF~~----~~~~-~---~~~F~~~A~~~-----------~d~~F~~t~~--   75 (124)
T 2l4c_A           22 EPTWLTDVPAAMEFI---AA--TEVAVIGFFQD----LEIP-A---VPILHSMVQKF-----------PGVSFGISTD--   75 (124)
T ss_dssp             CCEECCSHHHHHHHH---HT--SSEEEEEECSC----TTST-H---HHHHHHHHHHC-----------TTSEEEEECC--
T ss_pred             cceEcCCHHHHHHHH---hc--CCCEEEEEECC----CCCh-h---HHHHHHHHHhC-----------CCceEEEECh--
Confidence            356675 47899998   32  23577778887    7777 4   79999999986           2478887743  


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCcccccccccc----ccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF----ARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~----~~~a~~l~~fi~~~  177 (347)
                       ++++++++++ .|++.+|++.  ++     ....+++    ..+.+.|.+||+..
T Consensus        76 -~~v~~~~~v~-~~~vvlfkkf--de-----~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           76 -SEVLTHYNIT-GNTICLFRLV--DN-----EQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             -HHHHHHTTCC-SSCEEEEETT--TT-----EEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             -HHHHHHcCCC-CCeEEEEEcC--CC-----CceeecCcccCCCCHHHHHHHHHHh
Confidence             6799999999 8999999963  21     1123443    46899999999875

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.12  E-value=0.00088  Score=58.57  Aligned_cols=46  Identities=9%  Similarity=0.032  Sum_probs=32.9

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+||.|+++    ||++-|+...|+++++.+.+.+++      ++++.+..+++|
T Consensus        42 k~vlv~F~at----~C~~vC~~~~~~l~~l~~~~~~~~------~~~v~vv~Is~D   87 (200)
T 2b7k_A           42 KFSIIYFGFS----NCPDICPDELDKLGLWLNTLSSKY------GITLQPLFITCD   87 (200)
T ss_dssp             SCEEEEEECT----TCCSHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEESC
T ss_pred             CEEEEEEECC----CCcchhHHHHHHHHHHHHHHHHhh------CCceEEEEEECC
Confidence            4689999999    899415999999999988886431      124555555554

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.06  E-value=0.00011  Score=65.01  Aligned_cols=57  Identities=5%  Similarity=-0.068  Sum_probs=42.7

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      ..++|+.+.   .....-.+||.|++.    ||++ |+.++|.+   +++++.+          .+++.|.++|++.+
T Consensus       100 ~g~~y~~l~---~p~~~~~~vveFf~~----~C~~-C~~~~p~~~~~~~l~~~~----------~~~v~~~~~~v~~~  159 (197)
T 1un2_A          100 DGKQYTTLE---KPVAGAPQVLEFFSF----FCPH-CYQFEEVLHISDNVKKKL----------PEGVKMTKYHVNFM  159 (197)
T ss_dssp             BTTTEEECS---SCCTTCCSEEEEECT----TCHH-HHHHHHTSCHHHHHTTSS----------CTTCCEEEEECSSS
T ss_pred             CCCCceEcc---CCCCCCCEEEEEECC----CChh-HHHhCcccccHHHHHHHC----------CCCCEEEEeccCcC
Confidence            345677664   222234789999998    9999 89999999   8877654          24789999999864

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.03  E-value=0.00097  Score=52.31  Aligned_cols=65  Identities=9%  Similarity=0.142  Sum_probs=43.0

Q ss_pred             hhHHHHhcccCCCCCceEEEEEec-CCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDA-HQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----  128 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA-~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----  128 (347)
                      +.+++++   +.+   .++| |++ +....||++ |+.+.+.+++.                .+-|..+|++++++    
T Consensus         8 ~~~~~~i---~~~---~vvv-f~~g~~~~~~C~~-C~~~~~~L~~~----------------~i~~~~vdi~~~~~~~~~   63 (105)
T 2yan_A            8 ERLKVLT---NKA---SVML-FMKGNKQEAKCGF-SKQILEILNST----------------GVEYETFDILEDEEVRQG   63 (105)
T ss_dssp             HHHHHHH---TSS---SEEE-EESBCSSSBCTTH-HHHHHHHHHHH----------------TCCCEEEEGGGCHHHHHH
T ss_pred             HHHHHHh---ccC---CEEE-EEecCCCCCCCcc-HHHHHHHHHHC----------------CCCeEEEECCCCHHHHHH
Confidence            4566666   322   2444 655 111239999 79888877643                24577899998764    


Q ss_pred             hHhHcCCCCCceEE
Q 048343          129 SFALFAVNSLPHIR  142 (347)
Q Consensus       129 lf~~~~I~svP~l~  142 (347)
                      +.+.+|..++|+++
T Consensus        64 l~~~~g~~~vP~v~   77 (105)
T 2yan_A           64 LKAYSNWPTYPQLY   77 (105)
T ss_dssp             HHHHHTCCSSCEEE
T ss_pred             HHHHHCCCCCCeEE
Confidence            45668999999984

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.01  E-value=0.0011  Score=57.51  Aligned_cols=42  Identities=7%  Similarity=-0.127  Sum_probs=33.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ...+|+.|+++    ||++ |+.++|+++++++.+          .+++.|..++++
T Consensus        25 ~~~~vv~f~d~----~Cp~-C~~~~~~l~~l~~~~----------~~~v~~~~~~~~   66 (195)
T 3hd5_A           25 GKIEVLEFFAY----TCPH-CAAIEPMVEDWAKTA----------PQDVVLKQVPIA   66 (195)
T ss_dssp             TCEEEEEEECT----TCHH-HHHHHHHHHHHHHTC----------CTTEEEEEEECC
T ss_pred             CCeEEEEEECC----CCcc-HHHhhHHHHHHHHHC----------CCCeEEEEEecc
Confidence            44688999998    8999 899999999988765          236777777775

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.00  E-value=0.0046  Score=59.53  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .-+.++|.+|++++.   .+++  .++++|..+    +|..+|+.+..+++++|+.+          .+++.|+.+|.++
T Consensus       219 p~v~elt~~~~~~~~---~~~~--~~~v~f~~~----~~~~~~~~~~~~~~~~~~~~----------~~~i~f~~id~~~  279 (382)
T 2r2j_A          219 PLVREITFENGEELT---EEGL--PFLILFHMK----EDTESLEIFQNEVARQLISE----------KGTINFLHADCDK  279 (382)
T ss_dssp             CSSEECCHHHHHHHH---TTCC--CEEEEEECT----TCCHHHHHHHHHHHHHTGGG----------TTTSEEEEEETTT
T ss_pred             CceEecChhhHHHHh---cCCC--cEEEEEecC----CchHHHHHHHHHHHHHHHHh----------CCeeEEEEEchHH
Confidence            459999999999987   4433  466777766    34332555655555555443          3579999999999


Q ss_pred             CcchHhHcCCC--CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 SQSSFALFAVN--SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 ~~~lf~~~~I~--svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      .+...+.+|+.  ..|.+.++..+  ..    ..+...++..+++.|.+|+++...-++
T Consensus       280 ~~~~~~~~gl~~~~~P~i~i~~~~--~~----y~~~~~~~~~~~~~i~~F~~d~~~Gkl  332 (382)
T 2r2j_A          280 FRHPLLHIQKTPADCPVIAIDSFR--HM----YVFGDFKDVLIPGKLKQFVFDLHSGKL  332 (382)
T ss_dssp             THHHHHHTTCCGGGCSEEEEECSS--CE----EECCCSGGGGSTTHHHHHHHHHHHTTT
T ss_pred             hHHHHHHcCCCccCCCEEEEEcch--hc----CCCCccccccCHHHHHHHHHHHHCCCc
Confidence            88899999998  68999998642  11    112222233467889999988776554

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=96.95  E-value=0.002  Score=58.98  Aligned_cols=92  Identities=9%  Similarity=0.082  Sum_probs=62.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      +.++++|+|+    ||++ |....|.+++++++|.+.         ++.+..+++|.                       
T Consensus        35 ~vVL~~fpa~----~Cpv-C~tEl~~l~~l~~ef~~~---------gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPi  100 (249)
T 3a2v_A           35 WFVLFSHPAD----FTPV-CTTEFVSFARRYEDFQRL---------GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPI  100 (249)
T ss_dssp             EEEEECCSCT----TCHH-HHHHHHHHHHTHHHHHHT---------TEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCE
T ss_pred             EEEEEEEcCC----CCcC-hHHHHHHHHHHHHHHHhC---------CcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeE
Confidence            3455678888    8999 799999999999988542         35555555532                       


Q ss_pred             ----CcchHhHcCCC-------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          126 ----SQSSFALFAVN-------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       126 ----~~~lf~~~~I~-------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                          +.++.+.||+.       ++|+.+++.|. |...  .........+++.+++.+.|.+.
T Consensus       101 l~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~d-G~I~--~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          101 IADPQGTVARRLGLLHAESATHTVRGVFIVDAR-GVIR--TMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             EECTTSHHHHHHTCCCTTCSSSCCEEEEEECTT-SBEE--EEEEECTTBCCCHHHHHHHHHHH
T ss_pred             EECCchHHHHHhCCccccCCCcccceEEEECCC-CeEE--EEEecCCcccchhHHHHHHHHHH
Confidence                45789999998       99999999875 5542  00111111246778887777653

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=96.95  E-value=0.00096  Score=52.15  Aligned_cols=54  Identities=9%  Similarity=-0.017  Sum_probs=39.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc-----CCCCCceEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF-----AVNSLPHIR  142 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~-----~I~svP~l~  142 (347)
                      +-.-|++|+++    ||+. |+++++.+++.                ++-|..+|++++++..+.+     |..++|+++
T Consensus        14 ~~~~v~vy~~~----~Cp~-C~~ak~~L~~~----------------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~if   72 (99)
T 3qmx_A           14 VSAKIEIYTWS----TCPF-CMRALALLKRK----------------GVEFQEYCIDGDNEAREAMAARANGKRSLPQIF   72 (99)
T ss_dssp             CCCCEEEEECT----TCHH-HHHHHHHHHHH----------------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEE
T ss_pred             CCCCEEEEEcC----CChh-HHHHHHHHHHC----------------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEE
Confidence            34567789998    8999 79988877653                2446678998876544444     999999984

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.93  E-value=0.00077  Score=55.23  Aligned_cols=51  Identities=10%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---c----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---Q----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---~----~lf~~~~I~svP~l~~  143 (347)
                      +++|+++    ||++ |+.+++.+++..                +-|..+|+++.   +    ++.++++++++|++++
T Consensus        29 vvvf~~~----~Cp~-C~~~~~~L~~~~----------------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i   86 (130)
T 2cq9_A           29 VVIFSKT----SCSY-CTMAKKLFHDMN----------------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV   86 (130)
T ss_dssp             EEEEECS----SCSH-HHHHHHHHHHHT----------------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE
T ss_pred             EEEEEcC----CChH-HHHHHHHHHHcC----------------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE
Confidence            4558998    8999 799999887642                22456777754   3    3778999999999853

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=96.93  E-value=0.00077  Score=50.92  Aligned_cols=52  Identities=12%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc--CCcchHhHc-CCCCCceEEE
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK--ESQSSFALF-AVNSLPHIRL  143 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~--~~~~lf~~~-~I~svP~l~~  143 (347)
                      .+++|+++    ||+. |+.+++.+++.                .+-|..+|++  ..+++.+++ ++.++|++++
T Consensus         7 ~v~~y~~~----~C~~-C~~~~~~L~~~----------------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~   61 (89)
T 2klx_A            7 EIILYTRP----NCPY-CKRARDLLDKK----------------GVKYTDIDASTSLRQEMVQRANGRNTFPQIFI   61 (89)
T ss_dssp             CEEEESCS----CCTT-THHHHHHHHHH----------------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEEE
T ss_pred             eEEEEECC----CChh-HHHHHHHHHHc----------------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEEE
Confidence            47789988    8999 79988877653                1346678887  456788889 9999999854

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.92  E-value=0.00041  Score=55.96  Aligned_cols=54  Identities=7%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             EEEEEecCCCCCCChhhcccc-hHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc-------chHhHcCCCCCceEE
Q 048343           71 ILIFFDAHQLHNKPELHLQEL-RNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ-------SSFALFAVNSLPHIR  142 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l-~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~-------~lf~~~~I~svP~l~  142 (347)
                      .|++|+++    ||++ |+.+ .+.+++..             .+++-|..+|+++.+       ++.+.+|.+++|+++
T Consensus        26 ~Vvvf~~~----~Cp~-C~~alk~~L~~~~-------------~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vf   87 (118)
T 3c1r_A           26 EIFVASKT----YCPY-CHAALNTLFEKLK-------------VPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY   87 (118)
T ss_dssp             SEEEEECS----SCHH-HHHHHHHHHTTSC-------------CCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE
T ss_pred             cEEEEEcC----CCcC-HHHHHHHHHHHcC-------------CCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEE
Confidence            36679998    8999 7887 66554321             124778889998764       588899999999984

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=96.89  E-value=0.0023  Score=55.25  Aligned_cols=30  Identities=0%  Similarity=-0.279  Sum_probs=25.3

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      .-.+|+.|++.    ||++ |+.++|.++++++.+
T Consensus        25 ~~~~i~~f~d~----~Cp~-C~~~~~~l~~l~~~~   54 (192)
T 3h93_A           25 GKIEVVELFWY----GCPH-CYAFEPTIVPWSEKL   54 (192)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECC----CChh-HHHhhHHHHHHHHhC
Confidence            34688899998    8999 899999999887764

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=96.86  E-value=0.0019  Score=53.81  Aligned_cols=57  Identities=9%  Similarity=0.054  Sum_probs=41.3

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-------------------cCCcch
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-------------------KESQSS  129 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-------------------~~~~~l  129 (347)
                      .+|+.|+ ++    ||++ |+.-.|+++++.+.+.+.       + .+..+.+|-                   |.+.++
T Consensus        37 ~vvl~f~~~~----~c~~-C~~~~~~l~~~~~~~~~~-------~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~  103 (159)
T 2a4v_A           37 VVVFFVYPRA----STPG-STRQASGFRDNYQELKEY-------A-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREF  103 (159)
T ss_dssp             EEEEEECSSS----SSHH-HHHHHHHHHHHHHHHTTT-------C-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHH
T ss_pred             eEEEEEcCCC----CCCC-HHHHHHHHHHHHHHHHhC-------C-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHH
Confidence            4677776 77    8999 799999999999887421       2 444444431                   234578


Q ss_pred             HhHcCCCCCc
Q 048343          130 FALFAVNSLP  139 (347)
Q Consensus       130 f~~~~I~svP  139 (347)
                      .+.||+...|
T Consensus       104 ~~~~gv~~~p  113 (159)
T 2a4v_A          104 IGLLGAKKTP  113 (159)
T ss_dssp             HHHHTCBSSS
T ss_pred             HHHhCCcccc
Confidence            8999999998

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=96.82  E-value=0.0059  Score=55.28  Aligned_cols=124  Identities=15%  Similarity=0.138  Sum_probs=80.2

Q ss_pred             HHHHHHhc-CCCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCC
Q 048343           36 ELLNLQSQ-SEAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRG  114 (347)
Q Consensus        36 ~L~~l~~~-s~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~  114 (347)
                      +|.+.... +-.-|.++|.+|+.++.   +.  +  .++.|...+.. .+..+..++...++++|+.+...       ++
T Consensus       103 ~l~~fi~~~~~Plv~e~t~~n~~~~~---~~--~--~~v~~~~~~~~-~~~~~~~~~~~~~~~vA~~~~~k-------~~  167 (252)
T 2h8l_A          103 KIKKFIQENIFGICPHMTEDNKDLIQ---GK--D--LLIAYYDVDYE-KNAKGSNYWRNRVMMVAKKFLDA-------GH  167 (252)
T ss_dssp             HHHHHHHHHSSCSSCEECTTTHHHHS---SS--S--EEEEEECCBTT-TBHHHHHHHHHHHHHHHHHHHHT-------TC
T ss_pred             HHHHHHHhcccCCeeecccccHhhhc---CC--C--eEEEEeecchh-hcchhHHHHHHHHHHHHHHcccc-------Cc
Confidence            44444432 22359999999999974   33  2  34445443211 11121235888999999998642       23


Q ss_pred             ceEEEEEEccCCcchHhHcCC----CCCceEEEEcCCCCCCCCccccccccccccCHHH--HHHHHHhhcCCCC
Q 048343          115 KLFFCYLEFKESQSSFALFAV----NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAES--MADFVQSRTKLTV  182 (347)
Q Consensus       115 ~v~F~~vD~~~~~~lf~~~~I----~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~--l~~fi~~~t~~~i  182 (347)
                      ++.|+.+|.++.+.+.+.||+    ...|.+.++...  ..+   .   .++...+.+.  |.+|+++...-++
T Consensus       168 ~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~--~~k---y---~~~~~~t~~~~~i~~F~~~~~~Gkl  233 (252)
T 2h8l_A          168 KLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAK--GEK---F---VMQEEFSRDGKALERFLQDYFDGNL  233 (252)
T ss_dssp             CCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTT--SCE---E---ECCSCCCTTSHHHHHHHHHHHHTCS
T ss_pred             eEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCc--CcE---e---cCCcccCcchHHHHHHHHHHHCCCc
Confidence            599999999988889999999    359999999642  211   2   2223455666  9999988775444

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.013  Score=54.76  Aligned_cols=114  Identities=12%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             CCCCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           44 SEAGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        44 s~~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      .++.+.++++ +++++++   +.. +...+++|+..          .+..+.|+.+|..|.          +++.|+.++
T Consensus       141 ~~~~v~~i~~~~~l~~~l---~~~-~~~~vi~fs~~----------~~~~~~f~~~A~~~~----------~~~~F~~v~  196 (298)
T 3ed3_A          141 IRSYVKKFVRIDTLGSLL---RKS-PKLSVVLFSKQ----------DKISPVYKSIALDWL----------GKFDFYSIS  196 (298)
T ss_dssp             CCCCEEECSCGGGHHHHH---TSC-SSEEEEEEESS----------SSCCHHHHHHHHHTB----------TTEEEEEEE
T ss_pred             cccccEEcCCHHHHHHHH---hcC-CceEEEEEcCC----------CcchHHHHHHHHHhh----------cCcEEEEEc
Confidence            3567899965 6799998   332 34567777442          334589999999883          468999998


Q ss_pred             ccCCcchH--hHcC-----C-------------CCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHHhhcCCC
Q 048343          123 FKESQSSF--ALFA-----V-------------NSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQSRTKLT  181 (347)
Q Consensus       123 ~~~~~~lf--~~~~-----I-------------~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~~~t~~~  181 (347)
                      -++..+..  ++++     |             .+.|++++|++..       +.+..|++ ..+.++|.+||.+..+..
T Consensus       197 ~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~-------~~~~~y~g~~~~~~~i~~fi~~~~~~~  269 (298)
T 3ed3_A          197 NKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADK-------DKFWEYEGNSINKNDISKFLRDTFSIT  269 (298)
T ss_dssp             GGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTT-------TEEEECCCSSCCHHHHHHHHHHHHTCC
T ss_pred             chHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCC-------CceEEeccccCCHHHHHHHHHhhcCCC
Confidence            76654443  3444     2             6799999998742       22345553 578999999999877642


Q ss_pred             CCcccCCCC
Q 048343          182 VGPIHHPPL  190 (347)
Q Consensus       182 i~~i~~p~~  190 (347)
                        +...|+.
T Consensus       270 --p~~~~ls  276 (298)
T 3ed3_A          270 --PNEGPFS  276 (298)
T ss_dssp             --CSSSTTS
T ss_pred             --CCcCCCc
Confidence              4444543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=96.74  E-value=0.0013  Score=49.72  Aligned_cols=69  Identities=7%  Similarity=0.085  Sum_probs=47.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-----CC----cchHhHcCCCCCceEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-----ES----QSSFALFAVNSLPHIR  142 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-----~~----~~lf~~~~I~svP~l~  142 (347)
                      +++|+++    ||+. |+.+++.+++..                +-|-.+|++     +.    +++.+.++..++|+++
T Consensus        14 v~ly~~~----~Cp~-C~~~~~~L~~~g----------------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~   72 (92)
T 3ic4_A           14 VLMYGLS----TCPH-CKRTLEFLKREG----------------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVV   72 (92)
T ss_dssp             SEEEECT----TCHH-HHHHHHHHHHHT----------------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEE
T ss_pred             EEEEECC----CChH-HHHHHHHHHHcC----------------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEE
Confidence            6678888    8999 799887776542                223356666     33    5667889999999998


Q ss_pred             EEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          143 LVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       143 ~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +  .  |+.          -++.+.+++.++|+
T Consensus        73 ~--~--g~~----------i~G~~~~~l~~~l~   91 (92)
T 3ic4_A           73 K--G--DKH----------VLGYNEEKLKELIR   91 (92)
T ss_dssp             E--T--TEE----------EESCCHHHHHHHHH
T ss_pred             E--C--CEE----------EeCCCHHHHHHHhc
Confidence            7  2  221          13457888888875

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.73  E-value=0.0013  Score=55.32  Aligned_cols=62  Identities=8%  Similarity=0.176  Sum_probs=43.4

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---c---
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---Q---  127 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---~---  127 (347)
                      +.+++.+   +..    .+++|+++    ||++ |+.+.+.+++..                +-|..+|+++.   +   
T Consensus        40 ~~~~~~i---~~~----~Vvvf~~~----~Cp~-C~~~k~~L~~~~----------------i~~~~vdId~~~~~~~~~   91 (146)
T 2ht9_A           40 NQIQETI---SDN----CVVIFSKT----SCSY-CTMAKKLFHDMN----------------VNYKVVELDLLEYGNQFQ   91 (146)
T ss_dssp             HHHHHHH---HHC----SEEEEECT----TCHH-HHHHHHHHHHHT----------------CCCEEEEGGGCTTHHHHH
T ss_pred             HHHHHHh---cCC----CEEEEECC----CChh-HHHHHHHHHHcC----------------CCeEEEECccCcCCHHHH
Confidence            5566666   221    35559998    8999 799999887642                22456777654   3   


Q ss_pred             -chHhHcCCCCCceEEE
Q 048343          128 -SSFALFAVNSLPHIRL  143 (347)
Q Consensus       128 -~lf~~~~I~svP~l~~  143 (347)
                       ++.+.+|+.++|++++
T Consensus        92 ~~L~~~~g~~tvP~ifi  108 (146)
T 2ht9_A           92 DALYKMTGERTVPRIFV  108 (146)
T ss_dssp             HHHHHHHSCCCSCEEEE
T ss_pred             HHHHHHhCCCCcCeEEE
Confidence             3778999999999953

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=96.71  E-value=0.0033  Score=53.86  Aligned_cols=29  Identities=17%  Similarity=0.250  Sum_probs=24.7

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .+||.|+ ++    ||++ |+.-.|+++++.+.|.
T Consensus        53 ~vvl~f~~~~----~c~~-C~~el~~l~~l~~~~~   82 (179)
T 3ixr_A           53 WLVLYFYPKD----NTPG-SSTEGLEFNLLLPQFE   82 (179)
T ss_dssp             EEEEEECSCT----TSHH-HHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCC----CCCc-hHHHHHHHHHHHHHHH
Confidence            5777777 76    9999 7999999999999885

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=96.70  E-value=0.0058  Score=54.59  Aligned_cols=108  Identities=9%  Similarity=0.046  Sum_probs=60.9

Q ss_pred             ceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc------------------------
Q 048343           69 YSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF------------------------  123 (347)
Q Consensus        69 y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~------------------------  123 (347)
                      ..+||.|| |+    ||++ |+.-.|+++++.+.|.+.         ++.+.-+..                        
T Consensus        57 k~vvl~F~pat----wCp~-C~~e~p~l~~l~~~~~~~---------~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~f  122 (221)
T 2c0d_A           57 KYCCLLFYPLN----YTFV-CPTEIIEFNKHIKDFENK---------NVELLGISVDSVYSHLAWKNMPIEKGGIGNVEF  122 (221)
T ss_dssp             CEEEEEECCCC----TTTC-CHHHHHHHHHTHHHHHHT---------TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSS
T ss_pred             CeEEEEEEcCC----CCCc-hHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCHHHHHHHHHHhhhhcCccCCce
Confidence            36899999 88    8999 899999999998887531         122222221                        


Q ss_pred             ----cCCcchHhHcCC-----CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCCCcccCCCCchh
Q 048343          124 ----KESQSSFALFAV-----NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTVGPIHHPPLLSK  193 (347)
Q Consensus       124 ----~~~~~lf~~~~I-----~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p~~~~~  193 (347)
                          |...++.+.|++     ..+|+.+++.+. |... . ..........+.+++.+.|++.....--.+.-|.+|..
T Consensus       123 p~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~-G~I~-~-~~~g~~~~~~~~~ell~~l~~L~~~~~~~~~cp~~W~~  198 (221)
T 2c0d_A          123 TLVSDINKDISKNYNVLYDNSFALRGLFIIDKN-GCVR-H-QTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKK  198 (221)
T ss_dssp             EEEECTTSHHHHHTTCEETTTEECEEEEEECTT-SBEE-E-EEEECTTCCCCHHHHHHHHHHHHHHHHHCCSCC-----
T ss_pred             EEEECCchHHHHHcCCcccCCCccceEEEECCC-CeEE-E-EEecCCCCCCCHHHHHHHHHHHhhhhcCCCcCCCCCCC
Confidence                234467888888     478999999764 5542 0 00010011346777777776532111012334777754

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=96.63  E-value=0.0024  Score=48.32  Aligned_cols=51  Identities=10%  Similarity=0.038  Sum_probs=37.6

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEE
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIR  142 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~  142 (347)
                      .+++|+++    ||+. |+.+++.+++.                ++-|..+|+++++    ++.+.++..++|+++
T Consensus         7 ~v~ly~~~----~C~~-C~~~~~~L~~~----------------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~   61 (92)
T 2khp_A            7 DVIIYTRP----GCPY-CARAKALLARK----------------GAEFNEIDASATPELRAEMQERSGRNTFPQIF   61 (92)
T ss_dssp             CEEEEECT----TCHH-HHHHHHHHHHT----------------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred             cEEEEECC----CChh-HHHHHHHHHHc----------------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            47788988    8999 79887766531                2456788998764    345588999999764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=96.58  E-value=0.0042  Score=54.89  Aligned_cols=91  Identities=11%  Similarity=0.031  Sum_probs=58.0

Q ss_pred             ceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc------------------------
Q 048343           69 YSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF------------------------  123 (347)
Q Consensus        69 y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~------------------------  123 (347)
                      ..+||.|| |+    ||++ |+.-.|+++++.+.|.+.         ++.+.-+..                        
T Consensus        49 k~vvl~F~pat----~C~~-C~~e~~~l~~l~~~~~~~---------~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~f  114 (211)
T 2pn8_A           49 KYLVFFFYPLD----FTFV-CPTEIIAFGDRLEEFRSI---------NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRI  114 (211)
T ss_dssp             SEEEEEECSCT----TSSH-HHHHHHHHHHTHHHHHTT---------TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSS
T ss_pred             CeEEEEEECCC----CCCC-CHHHHHHHHHHHHHHHHC---------CCEEEEEECCCHHHHHHHHHHhhhccCccCCce
Confidence            36899999 88    8999 799999999999887531         122222211                        


Q ss_pred             ----cCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhh
Q 048343          124 ----KESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSR  177 (347)
Q Consensus       124 ----~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~  177 (347)
                          |...++.+.|++.      .+|+.+++.+. |...   ... .....+++.+++.+.|++.
T Consensus       115 p~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~-G~I~---~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          115 PLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDK-GILR---QITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             CEEECTTSHHHHHTTCEETTTTEECEEEEEECTT-SBEE---EEEEECTTBCCCHHHHHHHHHHH
T ss_pred             EEEECCchHHHHHcCCcccCCCcccceEEEECCC-CEEE---EEEecCCCCCCCHHHHHHHHHHh
Confidence                2234678888884      69999999774 5542   111 1111135677777777654

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.50  E-value=0.0034  Score=46.06  Aligned_cols=51  Identities=10%  Similarity=0.096  Sum_probs=37.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~  143 (347)
                      +++|+++    ||+. |+.+++.+++.                ++-|..+|+++++    ++.+.+++.++|++++
T Consensus         3 i~~y~~~----~C~~-C~~~~~~l~~~----------------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~   57 (82)
T 1fov_A            3 VEIYTKE----TCPY-CHRAKALLSSK----------------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECS----SCHH-HHHHHHHHHHH----------------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEECC----CChh-HHHHHHHHHHC----------------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5678887    8999 79888776642                2346678888754    3566899999999853

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=96.32  E-value=0.008  Score=54.34  Aligned_cols=95  Identities=15%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------  122 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------  122 (347)
                      ...+||.|++..   ||++ |..-.|+++++++.|.+.       +-.++.+.+|                         
T Consensus        77 Gk~vvL~F~~~~---~cp~-C~~el~~l~~l~~~~~~~-------gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~  145 (240)
T 3qpm_A           77 GKYLVFFFYPLD---FTFV-CPTEIIAFSDRVHEFRAI-------NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPL  145 (240)
T ss_dssp             TSEEEEEECSCT---TSSH-HHHHHHHHHHHHHHHHTT-------TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCE
T ss_pred             CCEEEEEEECCC---CCCc-hHHHHHHHHHHHHHHHHC-------CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeE
Confidence            347889999843   9999 799999999999988532       1112222222                         


Q ss_pred             -ccCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          123 -FKESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       123 -~~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                       .|...++.+.||+.      ..|+.+++.|. |... . ........++..+++.+.|++
T Consensus       146 l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~-G~I~-~-~~~~~~~~~~~~~eil~~l~~  203 (240)
T 3qpm_A          146 LSDLTHQISKDYGVYLEDQGHTLRGLFIIDEK-GVLR-Q-ITMNDLPVGRSVDETLRLVQA  203 (240)
T ss_dssp             EECTTSHHHHHTTCEETTTTEECEEEEEECTT-SBEE-E-EEEECTTBCCCHHHHHHHHHH
T ss_pred             EeCchHHHHHHhCCccccCCCccceEEEEcCC-CeEE-E-EEecCCCCCCCHHHHHHHHHH
Confidence             12234678889998      78999999774 5542 0 000111123556777666654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=96.23  E-value=0.016  Score=49.81  Aligned_cols=30  Identities=3%  Similarity=-0.169  Sum_probs=25.3

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      .-.+|+.|+..    +|++ |+.++|+++++.+.+
T Consensus        22 ~~~~i~~f~d~----~Cp~-C~~~~~~l~~l~~~~   51 (195)
T 2znm_A           22 GKIEVLEFFGY----FCVH-CHHFDPLLLKLGKAL   51 (195)
T ss_dssp             SSEEEEEEECT----TSCC-TTSSCHHHHHHHHHS
T ss_pred             CCcEEEEEECC----CChh-HHHHhHHHHHHHHHC
Confidence            44678889887    8999 899999999888765

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.19  E-value=0.019  Score=48.51  Aligned_cols=31  Identities=10%  Similarity=-0.045  Sum_probs=25.6

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .-..|+.|+..    +|++ |+.++|+++.+.+.|.
T Consensus        27 a~v~i~~f~D~----~Cp~-C~~~~~~~~~~~~~~~   57 (175)
T 1z6m_A           27 APVKMIEFINV----RCPY-CRKWFEESEELLAQSV   57 (175)
T ss_dssp             CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECC----CCcc-hHHHHHHHHHHHHHHh
Confidence            33577888887    8999 8999999999888773

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=96.05  E-value=0.025  Score=48.62  Aligned_cols=105  Identities=8%  Similarity=-0.037  Sum_probs=61.6

Q ss_pred             eEEEEEec-CCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc-------------------------
Q 048343           70 SILIFFDA-HQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF-------------------------  123 (347)
Q Consensus        70 ~vvV~fTA-~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~-------------------------  123 (347)
                      .+||.|++ +    ||++ |+.-.|+++++.+.+.+.         ++.+.-+..                         
T Consensus        32 ~vvl~F~~~~----~Cp~-C~~e~~~l~~~~~~~~~~---------~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~   97 (186)
T 1n8j_A           32 WSVFFFYPAD----FTFV-SPTELGDVADHYEELQKL---------GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIG   97 (186)
T ss_dssp             EEEEEECSCT----TCSH-HHHHHHHHHHHHHHHHHT---------TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEE
T ss_pred             eEEEEEECCC----CCCc-cHHHHHHHHHHHHHHHHC---------CCEEEEEECCCHHHHHHHHHHcCcccCCceeEEE
Confidence            68888885 6    9999 799999999998887532         122222222                         


Q ss_pred             cCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhhcCCCC-CcccCCCCch
Q 048343          124 KESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSRTKLTV-GPIHHPPLLS  192 (347)
Q Consensus       124 ~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~t~~~i-~~i~~p~~~~  192 (347)
                      |...++.+.||+.      ..|+.+++.+. |...   ... ......++.+++.+.|++.....- ..+.-|.||.
T Consensus        98 D~~~~~~~~ygv~~~~~g~~~p~~~lID~~-G~i~---~~~~~~~~~~~~~~~l~~~l~~l~~~~~~p~~~~p~~w~  170 (186)
T 1n8j_A           98 DPTGALTRNFDNMREDEGLADRATFVVDPQ-GIIQ---AIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWK  170 (186)
T ss_dssp             CTTSHHHHHTTCEETTTTEECEEEEEECTT-SBEE---EEEEECTTBCCCHHHHHHHHHHHHHHHHSTTCBBCTTCC
T ss_pred             CCchHHHHHhCCccCCCCceeeEEEEECCC-CeEE---EEEecCCCCCCCHHHHHHHHHHHHHHhhcCCCccCCCCC
Confidence            2334577788887      47999998764 4432   111 000112457777777765432111 0233466664

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=95.97  E-value=0.0055  Score=51.32  Aligned_cols=29  Identities=14%  Similarity=0.120  Sum_probs=17.9

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .+++.|+ ++    ||++ |+.-.|+++++.+.+.
T Consensus        32 ~vvl~f~~~~----~c~~-C~~e~~~l~~~~~~~~   61 (157)
T 4g2e_A           32 VVVLAFYPAA----FTQV-CTKEMCTFRDSMAKFN   61 (157)
T ss_dssp             CEEEEECSCT----TCCC-------CCSCGGGGGG
T ss_pred             eEEEEecCCC----CCCc-cccchhhccccccccc
Confidence            5778887 77    9999 7988888888777663

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=95.95  E-value=0.016  Score=49.02  Aligned_cols=92  Identities=5%  Similarity=-0.042  Sum_probs=58.0

Q ss_pred             eEEEEEecCCCCCCCh-hhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc--C---------------------
Q 048343           70 SILIFFDAHQLHNKPE-LHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK--E---------------------  125 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~-~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~--~---------------------  125 (347)
                      .++|.|+++    ||+ . |..-.|+++++.+.+.+.       ++++.+.-+.+|  +                     
T Consensus        30 ~vll~F~~t----~C~~~-C~~~~~~l~~~~~~~~~~-------~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~   97 (170)
T 3me7_A           30 PIILSPIYT----HCRAA-CPLITKSLLKVIPKLGTP-------GKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKV   97 (170)
T ss_dssp             CEEEEEECT----TCCSH-HHHHHHHHHTTHHHHCCB-------TTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEE
T ss_pred             EEEEEEECC----CCCch-hHHHHHHHHHHHHHhhhc-------CCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            689999999    897 7 799999999999888432       223444443332  1                     


Q ss_pred             --------CcchHhHcC---------CCCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHHhhcCC
Q 048343          126 --------SQSSFALFA---------VNSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 --------~~~lf~~~~---------I~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~~~t~~  180 (347)
                              ..++.+.||         +...|+++++.|. |...      ..+.+ ..+.+++.+-|++..+.
T Consensus        98 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~-G~i~------~~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A           98 VKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPE-LQIK------DYIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             EEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTT-SBEE------EEEESSSCCHHHHHHHHHHHTTC
T ss_pred             EeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCC-CeEE------EEEeCCCCCHHHHHHHHHHhhcc
Confidence                    124455544         3345677777664 4432      11222 35688899999887664

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=95.95  E-value=0.072  Score=48.00  Aligned_cols=123  Identities=14%  Similarity=0.118  Sum_probs=79.9

Q ss_pred             HHHHHHHhcC-CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCC-CChhhcccchHHHHHHHHHhhhcCCCCCCC
Q 048343           35 SELLNLQSQS-EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHN-KPELHLQELRNEFSLVASSFIANNVDNPSS  112 (347)
Q Consensus        35 ~~L~~l~~~s-~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~-~C~~cC~~l~pefe~vA~s~~~~~p~~~~~  112 (347)
                      ++|.+..... -.-|.++|.+|+.++.   .+ +  ..++.|...+... .... .+.+...++++|+.+          
T Consensus       104 ~~l~~fi~~~~~Plv~e~t~~n~~~~~---~~-~--~l~~~~~~~d~~~~~~~~-~~~~~~~~~~vAk~~----------  166 (250)
T 3ec3_A          104 SAIKDYVVKHALPLVGHRKTSNDAKRY---SK-R--PLVVVYYSVDFSFDYRTA-TQFWRNKVLEVAKDF----------  166 (250)
T ss_dssp             HHHHHHHHHHSSCTEEEECTTTHHHHS---CS-S--SEEEEEECCCCSTTTHHH-HHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHcCCCceeecCccchhhhh---cc-C--ccEEEEEecccccccchh-HHHHHHHHHHHHHhh----------
Confidence            3455554322 2359999999999875   22 2  2444454432111 1223 466889999999876          


Q ss_pred             CCceEEEEEEccCCcchHhHcCCCC--C-ceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          113 RGKLFFCYLEFKESQSSFALFAVNS--L-PHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       113 ~~~v~F~~vD~~~~~~lf~~~~I~s--v-P~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      . ++.|+.+|.++.....+.||+..  . |.+..+...  ..+   ..+..  ...+++.|.+|+++...-++
T Consensus       167 k-ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~--~~k---y~~~~--~~~t~~~i~~Fv~~~~~Gkl  231 (250)
T 3ec3_A          167 P-EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDES--GKK---FAMEP--EEFDSDALREFVMAFKKGKL  231 (250)
T ss_dssp             T-TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTT--SCE---EECCC--CSCCHHHHHHHHHHHHTTCC
T ss_pred             c-ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCC--Cce---ecCCc--ccCCHHHHHHHHHHHHCCCc
Confidence            3 68999999998888889999974  4 477777532  211   22221  34689999999999877654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=95.95  E-value=0.056  Score=48.02  Aligned_cols=30  Identities=17%  Similarity=0.010  Sum_probs=25.8

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ...+||.|||+    ||++ |+ -.|+++++.+.|.
T Consensus        56 GKvvll~FwAt----~C~~-c~-e~p~L~~l~~~~~   85 (215)
T 2i3y_A           56 GKHILFVNVAT----YCGL-TA-QYPELNALQEELK   85 (215)
T ss_dssp             TSEEEEEEECS----SSGG-GG-GHHHHHHHHHHHG
T ss_pred             CCEEEEEEeCC----CCCC-hH-hHHHHHHHHHHhc
Confidence            34799999999    8999 79 6799999999885

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.92  E-value=0.0026  Score=47.41  Aligned_cols=54  Identities=6%  Similarity=-0.055  Sum_probs=37.0

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cchHhHcCC-----CCCceE
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QSSFALFAV-----NSLPHI  141 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~lf~~~~I-----~svP~l  141 (347)
                      .+++|+++    ||+. |+++++.+++.              +-+.-+..+|.+++    +++.+..|.     .++|++
T Consensus         5 ~v~ly~~~----~Cp~-C~~~~~~L~~~--------------~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i   65 (89)
T 3msz_A            5 KVKIYTRN----GCPY-CVWAKQWFEEN--------------NIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQI   65 (89)
T ss_dssp             CEEEEECT----TCHH-HHHHHHHHHHT--------------TCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEE
T ss_pred             EEEEEEcC----CChh-HHHHHHHHHHc--------------CCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEE
Confidence            36778888    8999 79877655432              11344455566554    457778888     999999


Q ss_pred             EE
Q 048343          142 RL  143 (347)
Q Consensus       142 ~~  143 (347)
                      ++
T Consensus        66 ~i   67 (89)
T 3msz_A           66 FI   67 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=95.91  E-value=0.0062  Score=48.07  Aligned_cols=51  Identities=10%  Similarity=0.157  Sum_probs=35.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cc----hHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QS----SFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~----lf~~~~I~svP~l~~  143 (347)
                      |++|+++    ||++ |+.+.+.+++.                .+-|-.+|+++.    ++    +.+..|..++|++++
T Consensus        21 v~vy~~~----~Cp~-C~~~~~~L~~~----------------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi   79 (113)
T 3rhb_A           21 VVIYSKT----WCSY-CTEVKTLFKRL----------------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFV   79 (113)
T ss_dssp             EEEEECT----TCHH-HHHHHHHHHHT----------------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             EEEEECC----CChh-HHHHHHHHHHc----------------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            6779998    8999 79888777642                133456777652    22    445569999999943

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=95.89  E-value=0.014  Score=45.84  Aligned_cols=66  Identities=8%  Similarity=0.152  Sum_probs=42.4

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----h
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----S  129 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----l  129 (347)
                      +.+++++   +..   .++|+.+++....||+. |+++++.++..                ++-|..+|++++++    +
T Consensus         6 ~~~~~~i---~~~---~vvvy~~g~~~~~~Cp~-C~~ak~~L~~~----------------~i~~~~vdi~~~~~~~~~l   62 (109)
T 1wik_A            6 SGLKVLT---NKA---SVMLFMKGNKQEAKCGF-SKQILEILNST----------------GVEYETFDILEDEEVRQGL   62 (109)
T ss_dssp             CCHHHHH---TTS---SEEEEESSTTTCCCSST-HHHHHHHHHHT----------------CSCEEEEESSSCHHHHHHH
T ss_pred             HHHHHHh---ccC---CEEEEEecCCCCCCCch-HHHHHHHHHHc----------------CCCeEEEECCCCHHHHHHH
Confidence            4577777   322   35544443222249999 78877766431                35688999997653    5


Q ss_pred             HhHcCCCCCceEE
Q 048343          130 FALFAVNSLPHIR  142 (347)
Q Consensus       130 f~~~~I~svP~l~  142 (347)
                      .+..|..++|.++
T Consensus        63 ~~~~g~~~vP~if   75 (109)
T 1wik_A           63 KTFSNWPTYPQLY   75 (109)
T ss_dssp             HHHHSCCSSCEEE
T ss_pred             HHHhCCCCCCEEE
Confidence            5567899999864

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=95.79  E-value=0.013  Score=52.45  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=57.2

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE--------------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE--------------------------  122 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD--------------------------  122 (347)
                      +.++++|+|+    ||+. |..-.|++++++++|.+..       -++....+|                          
T Consensus        33 ~vvL~~~~a~----~cp~-C~~el~~l~~l~~~f~~~~-------v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~f  100 (224)
T 1prx_A           33 WGILFSHPRD----FTPV-CTTELGRAAKLAPEFAKRN-------VKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPF  100 (224)
T ss_dssp             EEEEEEESCS----SCHH-HHHHHHHHHHHHHHHHTTT-------EEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSS
T ss_pred             eEEEEEECCC----CCCC-cHHHHHHHHHHHHHHHHCC-------CEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCc
Confidence            4566667888    8999 7999999999998885321       112222222                          


Q ss_pred             ---ccCCcchHhHcCCC------------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhh
Q 048343          123 ---FKESQSSFALFAVN------------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSR  177 (347)
Q Consensus       123 ---~~~~~~lf~~~~I~------------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~  177 (347)
                         .|.+.++.+.||+.            ++|+.+++.|. |...   ... .....+++.+++.+.|++.
T Consensus       101 pil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~-G~I~---~~~~~~~~~gr~~~eil~~i~~l  167 (224)
T 1prx_A          101 PIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPD-KKLK---LSILYPATTGRNFDEILRVVISL  167 (224)
T ss_dssp             CEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTT-SBEE---EEEECCTTBCCCHHHHHHHHHHH
T ss_pred             ceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCC-CEEE---EEEecCCCCCCCHHHHHHHHHHH
Confidence               12345678888873            48999999875 5542   111 1111246778887777653

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=95.52  E-value=0.047  Score=49.81  Aligned_cols=94  Identities=12%  Similarity=0.139  Sum_probs=57.1

Q ss_pred             CceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE------------------------
Q 048343           68 PYSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE------------------------  122 (347)
Q Consensus        68 ~y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD------------------------  122 (347)
                      ...+||.|+ +.    ||++ |..-.|+++++++.|.+.       +-.++.+.+|                        
T Consensus        91 GK~vvL~F~~a~----~cp~-C~~el~~l~~l~~~~~~~-------gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp  158 (254)
T 3tjj_A           91 GKYLVFFFYPLD----FTFV-CPTEIIAFGDRLEEFRSI-------NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIP  158 (254)
T ss_dssp             TSEEEEEECSCT----TCSS-CCHHHHHHHHTHHHHHTT-------TEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSC
T ss_pred             CCeEEEEEECCC----CCCc-hHHHHHHHHHHHHHHHHc-------CCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccc
Confidence            346888888 65    9999 799999999999888532       0112222222                        


Q ss_pred             --ccCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          123 --FKESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       123 --~~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                        .|...++.+.||+.      .+|+.+++.+. |...  .........++..+++.+.|++
T Consensus       159 ~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~-G~I~--~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          159 LLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDK-GILR--QITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             EEECTTSHHHHHHTCEETTTTEECEEEEEECTT-SBEE--EEEEECTTCCCCHHHHHHHHHH
T ss_pred             eeeCcHHHHHHHcCCccccCCCccceEEEECCC-CeEE--EEEecCCCCCCCHHHHHHHHHh
Confidence              12235678888885      68999999874 5542  0001111123556666666653

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=95.33  E-value=0.077  Score=46.68  Aligned_cols=29  Identities=14%  Similarity=0.001  Sum_probs=24.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ..+||.|||+    ||++ |+ -.|+++++.+.|.
T Consensus        39 Kvvll~F~At----~C~~-c~-e~p~L~~l~~~~~   67 (207)
T 2r37_A           39 KYVLFVNVAS----YGGL-TG-QYIELNALQEELA   67 (207)
T ss_dssp             SEEEEEEECS----SSTT-TT-HHHHHHHHHHHHG
T ss_pred             CEEEEEEeCC----CCCC-hH-HHHHHHHHHHHhc
Confidence            4799999999    8999 75 4699999998885

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=95.30  E-value=0.022  Score=45.21  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=42.2

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-------
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-------  126 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-------  126 (347)
                      +.+++++   +.    .-|+.|+.+    ||+. |++.++-+++.                ++-|-.+|++..       
T Consensus         8 ~~~~~~i---~~----~~v~vy~~~----~Cp~-C~~ak~~L~~~----------------~i~~~~~dvd~~~~~~~~~   59 (114)
T 3h8q_A            8 RHLVGLI---ER----SRVVIFSKS----YCPH-STRVKELFSSL----------------GVECNVLELDQVDDGARVQ   59 (114)
T ss_dssp             HHHHHHH---HH----CSEEEEECT----TCHH-HHHHHHHHHHT----------------TCCCEEEETTTSTTHHHHH
T ss_pred             HHHHHHh---cc----CCEEEEEcC----CCCc-HHHHHHHHHHc----------------CCCcEEEEecCCCChHHHH
Confidence            4567776   22    135668887    8999 78877766542                234667788742       


Q ss_pred             cchHhHcCCCCCceEEE
Q 048343          127 QSSFALFAVNSLPHIRL  143 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~  143 (347)
                      ..+.+..|..++|++++
T Consensus        60 ~~l~~~~g~~tvP~vfi   76 (114)
T 3h8q_A           60 EVLSEITNQKTVPNIFV   76 (114)
T ss_dssp             HHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHhCCCccCEEEE
Confidence            23567789999999976

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=95.29  E-value=0.017  Score=52.07  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=62.4

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE--------------------------
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE--------------------------  122 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD--------------------------  122 (347)
                      .+|++|+ |+    ||+. |..-.|+++++.++|.+..       -++....+|                          
T Consensus        31 ~vvL~f~pa~----~cpv-C~~el~~l~~l~~ef~~~~-------v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpi   98 (233)
T 2v2g_A           31 WGVLFSHPRD----FTPV-STTELGRVIQLEGDFKKRG-------VKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPI   98 (233)
T ss_dssp             EEEEEECSCS----SCHH-HHHHHHHHHHTHHHHHHTT-------EEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCE
T ss_pred             eEEEEEECCC----CCCC-cHHHHHHHHHHHHHHHHcC-------CEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEE
Confidence            5777776 77    8999 7998899999888875421       112222211                          


Q ss_pred             -ccCCcchHhHcCCC------------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHhhcCCCCCcccCC
Q 048343          123 -FKESQSSFALFAVN------------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQSRTKLTVGPIHHP  188 (347)
Q Consensus       123 -~~~~~~lf~~~~I~------------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~~t~~~i~~i~~p  188 (347)
                       .|...++.+.||+.            ++|+.+++.|. |...   ... .....+++.+++.+.|++..-..-..+--|
T Consensus        99 l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~-G~I~---~~~~~~~~~gr~~~eilr~l~~Lq~~~~~~~~~p  174 (233)
T 2v2g_A           99 IADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPD-KKLK---LSILYPATTGRNFSEILRVIDSLQLTAQKKVATP  174 (233)
T ss_dssp             EECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTT-SBEE---EEEEECTTBCCCHHHHHHHHHHHHHHHHSSEEBC
T ss_pred             EECChHHHHHHhCCcCcccccCCCcccccceEEEECCC-CEEE---EEEecCCCCCCCHHHHHHHHHHHHhhccCCccCC
Confidence             12345678888885            68999999875 4542   111 111224677888777764321100134456


Q ss_pred             CCch
Q 048343          189 PLLS  192 (347)
Q Consensus       189 ~~~~  192 (347)
                      .||.
T Consensus       175 ~~W~  178 (233)
T 2v2g_A          175 ADWQ  178 (233)
T ss_dssp             TTCC
T ss_pred             CCcC
Confidence            6663

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=95.15  E-value=0.025  Score=43.85  Aligned_cols=53  Identities=9%  Similarity=0.150  Sum_probs=36.8

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-----cchHh----HcCCCCCce
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-----QSSFA----LFAVNSLPH  140 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-----~~lf~----~~~I~svP~  140 (347)
                      ..+++|+++    ||++ |+++++.+++..                +-|-.+|++..     +++++    ..+..++|+
T Consensus        22 ~~v~ly~~~----~Cp~-C~~ak~~L~~~~----------------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~   80 (103)
T 3nzn_A           22 GKVIMYGLS----TCVW-CKKTKKLLTDLG----------------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPT   80 (103)
T ss_dssp             SCEEEEECS----SCHH-HHHHHHHHHHHT----------------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCE
T ss_pred             CeEEEEcCC----CCch-HHHHHHHHHHcC----------------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCE
Confidence            457779998    8999 799988877532                22445666641     24442    358999999


Q ss_pred             EEE
Q 048343          141 IRL  143 (347)
Q Consensus       141 l~~  143 (347)
                      +++
T Consensus        81 l~i   83 (103)
T 3nzn_A           81 TII   83 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=95.15  E-value=0.087  Score=46.92  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=61.5

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS  128 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~  128 (347)
                      -.++++++++++.  ... +.++.++|+..    .|..        ...++..+..        ...+.+..++ ++.++
T Consensus       141 ~~~~~~~l~~~~~--~~~-~~~~al~f~~~----~~~~--------~~~~~~d~~~--------~~~i~v~~~~-~~~~~  196 (244)
T 3q6o_A          141 EPAXLEEIDGFFA--RNN-EEYLALIFEXG----GSYL--------AREVALDLSQ--------HKGVAVRRVL-NTEAN  196 (244)
T ss_dssp             SCCCHHHHHTHHH--HCC-CSEEEEEEECT----TCCH--------HHHHHHHTTT--------CTTEEEEEEE-TTCHH
T ss_pred             ccccHHHHHHHhh--cCC-CceEEEEEEEC----Ccch--------HHHHHHHhcc--------CCceEEEEEe-CchHH
Confidence            4567788988873  233 34566677775    3433        2334444421        2357776665 44578


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++|||+++|++++|.++ |+..      .......+.+.+..++++..|+
T Consensus       197 l~~~f~v~~~Pslvl~~~~-g~~~------~~~~~~~~r~~~~~~l~~~~~~  241 (244)
T 3q6o_A          197 VVRKFGVTDFPSCYLLFRN-GSVS------RVPVLMESRSFYTAYLQRLSGL  241 (244)
T ss_dssp             HHHHHTCCCSSEEEEEETT-SCEE------ECCCSSSSHHHHHHHHHTC---
T ss_pred             HHHHcCCCCCCeEEEEeCC-CCeE------eeccccccHHHHHHHHHhCCCC
Confidence            9999999999999999875 4432      1112234567788888877664

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=95.15  E-value=0.031  Score=46.74  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHH--hhhcCCC---CCC----------CCCc------eE--------E--
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASS--FIANNVD---NPS----------SRGK------LF--------F--  118 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s--~~~~~p~---~~~----------~~~~------v~--------F--  118 (347)
                      .+|+.|+.+    +|+. |+++.++++++.+-  .....|-   +..          ..++      ++        .  
T Consensus        16 ~~vv~f~D~----~Cp~-C~~~~~~l~~l~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~~~   90 (147)
T 3gv1_A           16 LKVAVFSDP----DCPF-CKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSI   90 (147)
T ss_dssp             EEEEEEECT----TCHH-HHHHHHHHTTCCSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTCCC
T ss_pred             EEEEEEECC----CChh-HHHHHHHHhhcCceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccHH
Confidence            578889988    8999 89999998765220  1112221   000          0000      00        0  


Q ss_pred             EEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          119 CYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       119 ~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ...+++++.++.+++||+++|++++ ..  |..         ..|..+.++|.+.|++...
T Consensus        91 ~~~~v~~~~~la~~~gI~gtPt~vi-~n--G~~---------i~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           91 CDNPVAETTSLGEQFGFNGTPTLVF-PN--GRT---------QSGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             CSCSHHHHHHHHHHTTCCSSCEEEC-TT--SCE---------EESCCCTTHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHhCCCccCEEEE-EC--CEE---------eeCCCCHHHHHHHHHHHHH
Confidence            0122334568899999999999998 42  221         2355678889888887654

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=95.09  E-value=0.0068  Score=49.62  Aligned_cols=65  Identities=11%  Similarity=0.034  Sum_probs=41.9

Q ss_pred             hhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccc-hHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC-----
Q 048343           53 DQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQEL-RNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES-----  126 (347)
Q Consensus        53 ~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l-~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~-----  126 (347)
                      .+.+++.+   +.    .-|++|+.+    ||+. |+++ ++.+++..             ..++-|..+|++..     
T Consensus        27 ~~~v~~~i---~~----~~Vvvy~~~----~Cp~-C~~a~k~~L~~~~-------------~~~i~~~~vdvd~~~~~~~   81 (129)
T 3ctg_A           27 VAHVKDLI---GQ----KEVFVAAKT----YCPY-CKATLSTLFQELN-------------VPKSKALVLELDEMSNGSE   81 (129)
T ss_dssp             HHHHHHHH---HH----SSEEEEECT----TCHH-HHHHHHHHHTTSC-------------CCGGGEEEEEGGGSTTHHH
T ss_pred             HHHHHHHH---cC----CCEEEEECC----CCCc-hHHHHHHHHHhcC-------------ccCCCcEEEEccccCCHHH
Confidence            35566665   22    126778887    8999 7877 66554321             11245666777653     


Q ss_pred             --cchHhHcCCCCCceEE
Q 048343          127 --QSSFALFAVNSLPHIR  142 (347)
Q Consensus       127 --~~lf~~~~I~svP~l~  142 (347)
                        +++.+.+|..++|+++
T Consensus        82 ~~~~L~~~~g~~tVP~vf   99 (129)
T 3ctg_A           82 IQDALEEISGQKTVPNVY   99 (129)
T ss_dssp             HHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHHHHhCCCCCCEEE
Confidence              2578889999999974

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=95.05  E-value=0.0067  Score=51.33  Aligned_cols=29  Identities=10%  Similarity=0.020  Sum_probs=22.3

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .+|+.|+ ++    ||++ |+.-.|++++..+.|.
T Consensus        35 ~vvl~f~~~~----~cp~-C~~e~~~l~~~~~~~~   64 (164)
T 4gqc_A           35 PAVLIFFPAA----FSPV-CTKELCTFRDKMAQLE   64 (164)
T ss_dssp             CEEEEECSCT----TCCE-ECSSCEESCCCGGGGG
T ss_pred             EEEEEEeCCC----CCCC-cccchhhhhhhHHHhh
Confidence            4666666 77    9999 7888888888777764

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=94.92  E-value=0.029  Score=48.60  Aligned_cols=43  Identities=14%  Similarity=0.002  Sum_probs=34.6

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      -.+||.|++.    ||++ |+.++|.++++++.+          .+++.|..++++-+
T Consensus        25 ~v~vv~f~d~----~Cp~-C~~~~~~l~~~~~~~----------~~~v~~~~~p~~~~   67 (193)
T 3hz8_A           25 KVEVLEFFGY----FCPH-CAHLEPVLSKHAKSF----------KDDMYLRTEHVVWQ   67 (193)
T ss_dssp             SEEEEEEECT----TCHH-HHHHHHHHHHHHTTC----------CTTEEEEEEECCCS
T ss_pred             CcEEEEEECC----CChh-HHHHHHHHHHHHHHC----------CCCeEEEEecCCCC
Confidence            4688999998    8999 899999998877654          23789999888743

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.86  E-value=0.15  Score=44.10  Aligned_cols=111  Identities=5%  Similarity=-0.018  Sum_probs=73.0

Q ss_pred             CeEEcChhhHHHHhcccC----CCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEE
Q 048343           47 GVIHLNDQLVSRFLTSTK----TPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFC  119 (347)
Q Consensus        47 ~VI~L~~~nf~~lv~~~~----~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~  119 (347)
                      .-...-..+|++-+. ..    ......++|++.++    +|.. |..|..+.   +.|.+-. +         ++..+.
T Consensus        31 ~~p~F~~gs~~~Al~-~A~~~~k~e~K~LlVyLhs~----~~~~-~~~f~~~~L~~~~V~~~l-~---------~nfV~w   94 (178)
T 2ec4_A           31 CHPVFFIGSLEAAFQ-EAFYVKARDRKLLAIYLHHD----ESVL-TNVFCSQMLCAESIVSYL-S---------QNFITW   94 (178)
T ss_dssp             CCCCCCCSCHHHHHH-TTTSSCTTTCCEEEEEEECS----SCSH-HHHHHHHTTTCHHHHHHH-H---------HTEEEE
T ss_pred             CCCCeeeCCHHHHHH-HHHhhhhhhCcEEEEEEeCC----CCcc-HHHHHHHhcCCHHHHHHH-H---------cCEEEE
Confidence            345566778988773 22    33456899999998    7999 67776433   3344333 2         257888


Q ss_pred             EEEccCCc---------------chH---hHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          120 YLEFKESQ---------------SSF---ALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       120 ~vD~~~~~---------------~lf---~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ..|+++..               ++.   +.++++++|++.+.-|.++..    ..+.+..|..+++++.+-+.+.
T Consensus        95 ~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~----~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A           95 AWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSN----EVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             EEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCC----CEEEEECSCCCHHHHHHHHHHH
T ss_pred             EEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCce----EEEEEEeCCCCHHHHHHHHHHH
Confidence            99998653               333   348999999999998752221    2234445667888888777654

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=94.85  E-value=0.045  Score=46.34  Aligned_cols=30  Identities=7%  Similarity=-0.099  Sum_probs=23.9

Q ss_pred             eEEEEEe-cCCCCCCChhhccc-chHHHHHHHHHhhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQE-LRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~-l~pefe~vA~s~~~  104 (347)
                      .+|+.|+ ++    ||++ |+. -.|+++++++.+.+
T Consensus        33 ~vvl~f~~a~----wcp~-C~~~e~p~l~~~~~~~~~   64 (167)
T 2wfc_A           33 KGVLFAVPGA----FTPG-SSKTHLPGYVEQAAAIHG   64 (167)
T ss_dssp             EEEEEEESCT----TCHH-HHHTHHHHHHHTHHHHHH
T ss_pred             cEEEEEeCCC----CCCC-CCHHHHHHHHHHHHHHHH
Confidence            4666665 77    9999 798 88999999888854

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=94.83  E-value=0.053  Score=48.34  Aligned_cols=30  Identities=10%  Similarity=0.124  Sum_probs=25.4

Q ss_pred             eEEEEEe-cCCCCCCChhhcc-cchHHHHHHHHHhhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQ-ELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~-~l~pefe~vA~s~~~  104 (347)
                      .+||.|| |+    ||++ |+ .-.|+++++++.+.+
T Consensus        35 ~vvl~f~~a~----~cp~-C~~~e~~~l~~~~~~~~~   66 (241)
T 1nm3_A           35 TVIVFSLPGA----FTPT-CSSSHLPRYNELAPVFKK   66 (241)
T ss_dssp             EEEEEEESCS----SCHH-HHHTHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCC----CCCC-CCHHHHHHHHHHHHHHHH
Confidence            5788888 77    9999 79 888999999988854

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=94.77  E-value=0.042  Score=45.91  Aligned_cols=30  Identities=10%  Similarity=0.018  Sum_probs=25.3

Q ss_pred             eEEEEEe-cCCCCCCChhhcc-cchHHHHHHHHHhhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQ-ELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~-~l~pefe~vA~s~~~  104 (347)
                      .+|+.|+ ++    ||++ |+ .-.|+++++++.+.+
T Consensus        37 ~vvl~f~~~~----~c~~-C~~~e~~~l~~~~~~~~~   68 (162)
T 1tp9_A           37 KVILFGVPGA----FTPT-CSLKHVPGFIEKAGELKS   68 (162)
T ss_dssp             EEEEEEESCT----TCHH-HHHTHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCC----CCCC-CCHHHHHHHHHHHHHHHH
Confidence            5888888 66    9999 79 788999999988853

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=94.69  E-value=0.0069  Score=52.50  Aligned_cols=42  Identities=2%  Similarity=-0.108  Sum_probs=31.2

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      -.+||.|++.    ||++ |+.++|.+   +++++.+          .+++.|...|+.-
T Consensus        15 ~~~vvef~d~----~Cp~-C~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~   59 (189)
T 3l9v_A           15 APAVVEFFSF----YCPP-CYAFSQTMGVDQAIRHVL----------PQGSRMVKYHVSL   59 (189)
T ss_dssp             CCSEEEEECT----TCHH-HHHHHHTSCHHHHHHTTC----------CTTCCEEEEECSS
T ss_pred             CCEEEEEECC----CChh-HHHHhHhccchHHHHHhC----------CCCCEEEEEechh
Confidence            4678899987    9999 89999987   4555433          2367888888764

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=94.64  E-value=0.037  Score=46.27  Aligned_cols=28  Identities=18%  Similarity=0.105  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHH
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASS  101 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s  101 (347)
                      .++|.|++..   ||++ |+.-.|+++++.+.
T Consensus        48 ~vvl~f~~~~---~c~~-C~~~~~~l~~~~~~   75 (166)
T 3p7x_A           48 KKLISVVPSI---DTGV-CDQQTRKFNSDASK   75 (166)
T ss_dssp             CEEEEECSCT---TSHH-HHHHHHHHHHHSCT
T ss_pred             cEEEEEECCC---CCCc-cHHHHHHHHHHhhc
Confidence            5788888433   9999 78888888876543

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=94.60  E-value=0.041  Score=46.02  Aligned_cols=28  Identities=7%  Similarity=0.029  Sum_probs=24.0

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      .+||.|| ++    ||++ |+.-.|+++++.+.|
T Consensus        45 ~vvl~f~~~~----~c~~-C~~e~~~l~~~~~~~   73 (165)
T 1q98_A           45 RKVLNIFPSI----DTGV-CATSVRKFNQQAAKL   73 (165)
T ss_dssp             EEEEEECSCS----CSSC-CCHHHHHHHHHHHHS
T ss_pred             eEEEEEECCC----CCCc-cHHHHHHHHHHHHHc
Confidence            6888888 55    9999 799999999988876

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=94.60  E-value=0.037  Score=46.44  Aligned_cols=30  Identities=7%  Similarity=0.089  Sum_probs=23.9

Q ss_pred             CceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHh
Q 048343           68 PYSILIFFD-AHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        68 ~y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      ...++|.|| ++    ||++ |+.-.|+++++.+.+
T Consensus        47 gk~vvl~f~~~~----~C~~-C~~~~~~l~~~~~~~   77 (171)
T 2yzh_A           47 DVVQVIITVPSL----DTPV-CETETKKFNEIMAGM   77 (171)
T ss_dssp             SSEEEEEECSCT----TSHH-HHHHHHHHHHHTTTC
T ss_pred             CCeEEEEEECCC----CCCc-hHHHHHHHHHHHHHc
Confidence            446888888 66    8999 799899988877654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=94.54  E-value=0.031  Score=47.47  Aligned_cols=57  Identities=4%  Similarity=0.004  Sum_probs=39.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccc-hHHHHHHHHHhhhcCCCCCCCCCceE-EEEEEccC---CcchHhHcCCC-CCc
Q 048343           69 YSILIFFDAHQLHNKPELHLQEL-RNEFSLVASSFIANNVDNPSSRGKLF-FCYLEFKE---SQSSFALFAVN-SLP  139 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l-~pefe~vA~s~~~~~p~~~~~~~~v~-F~~vD~~~---~~~lf~~~~I~-svP  139 (347)
                      ..+++.|+|+    ||++ |+.- .|++++..+.|.+.         ++. +.-+..++   .++..++++++ ++|
T Consensus        45 ~vvl~~~~a~----wcp~-C~~eh~p~l~~~~~~~~~~---------g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           45 KVVIFGLPGA----YTGV-CSSKHVPPYKHNIDKFKAK---------GVDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             EEEEEECSCT----TCTT-HHHHTHHHHHHTHHHHHHT---------TCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CEEEEEecCC----CCCC-CCHHHHHHHHHHHHHHHHC---------CCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            3567788998    8999 7987 89999999888532         233 44555554   23567778874 666

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=94.42  E-value=0.044  Score=48.71  Aligned_cols=92  Identities=15%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE--------------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE--------------------------  122 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD--------------------------  122 (347)
                      +.++++|+|+    ||+. |..-.|+++++.++|.+.       +-++....+|                          
T Consensus        33 ~vvL~f~~a~----~cp~-C~~el~~l~~l~~~f~~~-------~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil  100 (220)
T 1xcc_A           33 WAILFSHPND----FTPV-CTTELAELGKMHEDFLKL-------NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIV  100 (220)
T ss_dssp             EEEEECCSCT----TCHH-HHHHHHHHHHTHHHHHTT-------TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEE
T ss_pred             eEEEEEECCC----CCCC-CHHHHHHHHHHHHHHHHc-------CCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeE
Confidence            4455556888    8999 798889999988887532       0112222222                          


Q ss_pred             ccCCcchHhHcCCC------------CCceEEEEcCCCCCCCCccccc-cccccccCHHHHHHHHHh
Q 048343          123 FKESQSSFALFAVN------------SLPHIRLVGPDAKSLKDDSVQM-EQGDFARMAESMADFVQS  176 (347)
Q Consensus       123 ~~~~~~lf~~~~I~------------svP~l~~fpp~~g~~~~~~~~~-~~~~~~~~a~~l~~fi~~  176 (347)
                      .|.+.++.+.||+.            ++|+.+++.|. |...   ... .....+++.+++.+.|++
T Consensus       101 ~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~-G~I~---~~~~~~~~~g~~~~ell~~i~~  163 (220)
T 1xcc_A          101 CDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPE-KKIK---ATVLYPATTGRNAHEILRVLKS  163 (220)
T ss_dssp             ECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTT-SBEE---EEEEECTTBCCCHHHHHHHHHH
T ss_pred             ECchhHHHHHhCCCCcccccCCCCCcccceEEEECCC-CEEE---EEEecCCCCCCCHHHHHHHHHH
Confidence            12344678888883            47999999875 5542   111 111234677888777764

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=94.42  E-value=0.041  Score=45.81  Aligned_cols=30  Identities=3%  Similarity=-0.012  Sum_probs=23.6

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      ..+++.||+..   ||++ |+.-.|+++++.+.|
T Consensus        43 k~vvl~F~~~~---~c~~-C~~~~~~l~~~~~~~   72 (163)
T 1psq_A           43 KKKVLSVVPSI---DTGI-CSTQTRRFNEELAGL   72 (163)
T ss_dssp             SEEEEEECSCT---TSHH-HHHHHHHHHHHTTTC
T ss_pred             CEEEEEEECCC---CCCc-cHHHHHHHHHHHHHc
Confidence            36888998632   9999 799889988877655

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=93.23  E-value=0.085  Score=45.57  Aligned_cols=30  Identities=7%  Similarity=-0.062  Sum_probs=24.1

Q ss_pred             eEEEEEecCCCCCCChhhccc-chHHHHHHHHHhhh
Q 048343           70 SILIFFDAHQLHNKPELHLQE-LRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~-l~pefe~vA~s~~~  104 (347)
                      .++++|+++    ||++ |+. -.|+|+++++.|.+
T Consensus        59 vvL~f~~a~----wcp~-C~~~e~p~l~~~~~~~~~   89 (184)
T 3uma_A           59 VVLFAVPGA----FTPT-CSLNHLPGYLENRDAILA   89 (184)
T ss_dssp             EEEEEESCT----TCHH-HHHTHHHHHHHTHHHHHT
T ss_pred             EEEEEEcCC----CCCC-cCHHHHHHHHHHHHHHHH
Confidence            456667788    9999 798 58999999998853

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=92.98  E-value=0.1  Score=45.36  Aligned_cols=30  Identities=7%  Similarity=0.027  Sum_probs=24.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      ..++|.||+..   ||++ |+.-.|+++++.+.|
T Consensus        79 k~vvl~F~~~~---~c~~-C~~e~~~l~~l~~~~  108 (200)
T 3zrd_A           79 KRKVLNIFPSI---DTGV-CAASVRKFNQLAGEL  108 (200)
T ss_dssp             SEEEEEECSCC---CCSC-CCHHHHHHHHHHHTS
T ss_pred             CcEEEEEECCC---CCch-hHHHHHHHHHHHHHh
Confidence            36888888432   9999 799999999998876

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=92.90  E-value=0.77  Score=46.11  Aligned_cols=76  Identities=11%  Similarity=0.071  Sum_probs=52.5

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      +..++++++++++.  ..++ -+++++|+..+            .+....++..+..        ..++.+..++ +++.
T Consensus       140 l~~it~~~l~~~l~--~~~~-~~vallF~~~~------------s~~~~~~~ldl~~--------~~~v~v~~v~-~~~~  195 (519)
T 3t58_A          140 LEPAKLNDIDGFFT--RNKA-DYLALVFERED------------SYLGREVTLDLSQ--------YHAVAVRRVL-NTES  195 (519)
T ss_dssp             CSBCCHHHHTTGGG--SCCC-SEEEEEEECTT------------CCHHHHHHHHTTT--------CTTEEEEEEE-TTCH
T ss_pred             cCcCCHHHHHHHhc--cCCC-CeEEEEecCCc------------hHHHHHHHHHhhc--------cCCeeEEEec-CchH
Confidence            56678899999872  3333 45677777642            1144556666632        2457776554 4567


Q ss_pred             chHhHcCCCCCceEEEEcCC
Q 048343          128 SSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~  147 (347)
                      +++++|||+++|++++|.++
T Consensus       196 ~l~~kfgV~~~Pslvl~~~n  215 (519)
T 3t58_A          196 DLVNKFGVTDFPSCYLLLRN  215 (519)
T ss_dssp             HHHHHHTCCCSSEEEEEETT
T ss_pred             HHHHHcCCCCCCeEEEEeCC
Confidence            89999999999999999975

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=92.80  E-value=0.13  Score=40.40  Aligned_cols=55  Identities=7%  Similarity=0.039  Sum_probs=35.0

Q ss_pred             EEEEecCCCC-CCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLH-NKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~-~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~  143 (347)
                      |+.|+.+.|. .+|+. |++....+++        +        ++-|-.+|++++++    +.+..|-.++|.+++
T Consensus        20 Vvvy~k~t~~~p~Cp~-C~~ak~~L~~--------~--------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi   79 (109)
T 3ipz_A           20 VVLFMKGTRDFPMCGF-SNTVVQILKN--------L--------NVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI   79 (109)
T ss_dssp             EEEEESBCSSSBSSHH-HHHHHHHHHH--------T--------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred             EEEEEecCCCCCCChh-HHHHHHHHHH--------c--------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence            4456654332 38999 6876655443        1        34577889887653    444458999998755

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=92.67  E-value=0.17  Score=37.56  Aligned_cols=55  Identities=7%  Similarity=0.140  Sum_probs=37.2

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-----CCc----chHhHcCCC-----C
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-----ESQ----SSFALFAVN-----S  137 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-----~~~----~lf~~~~I~-----s  137 (347)
                      +++|+.+...++|+. |++.+.-+++        +        ++-|-.+|++     +++    ++.+..|-.     +
T Consensus         2 v~iY~~~~~~~~Cp~-C~~ak~~L~~--------~--------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~t   64 (87)
T 1aba_A            2 FKVYGYDSNIHKCGP-CDNAKRLLTV--------K--------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLT   64 (87)
T ss_dssp             EEEEECCTTTSCCHH-HHHHHHHHHH--------T--------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCC
T ss_pred             EEEEEeCCCCCcCcc-HHHHHHHHHH--------c--------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCc
Confidence            456666645568999 6766554432        1        3557778888     543    466778998     9


Q ss_pred             CceEEE
Q 048343          138 LPHIRL  143 (347)
Q Consensus       138 vP~l~~  143 (347)
                      +|.+++
T Consensus        65 vP~v~i   70 (87)
T 1aba_A           65 MPQVFA   70 (87)
T ss_dssp             SCEEEC
T ss_pred             cCEEEE
Confidence            999875

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=92.55  E-value=0.19  Score=37.95  Aligned_cols=57  Identities=7%  Similarity=0.117  Sum_probs=35.9

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcC--CCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFA--VNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~--I~svP~l~~  143 (347)
                      |+.||.+    +|+. |+..+..  +-|+++.+++        ++-|-.+|+++++    ++.+..|  -.++|.+++
T Consensus         4 v~ly~~~----~C~~-c~~~~~~--~~ak~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi   66 (93)
T 1t1v_A            4 LRVYSTS----VTGS-REIKSQQ--SEVTRILDGK--------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN   66 (93)
T ss_dssp             EEEEECS----SCSC-HHHHHHH--HHHHHHHHHT--------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred             EEEEEcC----CCCC-chhhHHH--HHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence            5667777    8999 6322111  2233444332        4678899998764    4556778  789999864

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=92.54  E-value=0.18  Score=42.52  Aligned_cols=44  Identities=5%  Similarity=-0.009  Sum_probs=32.0

Q ss_pred             ceEEEEEecCCCCCCCh-hhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           69 YSILIFFDAHQLHNKPE-LHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~-~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+||.|+++    ||+ . |....+++.++.+.+.++       +.++.|.-+.+|
T Consensus        33 k~vll~F~~t----~Cp~~-Cp~~~~~l~~l~~~~~~~-------~~~v~~v~isvD   77 (170)
T 4hde_A           33 KVWVADFMFT----NCQTV-CPPMTANMAKLQKMAKEE-------KLDVQFVSFSVD   77 (170)
T ss_dssp             SCEEEEEECT----TCSSS-HHHHHHHHHHHHHHHHHT-------TCCCEEEEEESC
T ss_pred             CEEEEEEECC----CCCCc-ccHHHHHHHHHHHhhhcc-------cccceeEeeecC
Confidence            3689999999    675 6 677788888888877542       345666666665

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=92.14  E-value=0.14  Score=42.23  Aligned_cols=57  Identities=9%  Similarity=0.154  Sum_probs=36.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEE
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRL  143 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~  143 (347)
                      .++|+.+++....||+. |++...-+++                ..+-|..+|++++++    +.+..|..++|.+++
T Consensus        36 ~Vvvy~ks~~~~~~Cp~-C~~ak~~L~~----------------~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI   96 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGF-SAQAVQALAA----------------CGERFAYVDILQNPDIRAELPKYANWPTFPQLWV   96 (135)
T ss_dssp             SEEEEESBCSSSBSSHH-HHHHHHHHHT----------------TCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred             CEEEEEEecCCCCCCcc-HHHHHHHHHH----------------cCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEE
Confidence            35555544222338999 6866654432                135578899987653    444568999999864

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=91.92  E-value=0.17  Score=40.03  Aligned_cols=55  Identities=7%  Similarity=0.136  Sum_probs=35.1

Q ss_pred             EEEEecCCCC-CCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcch----HhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLH-NKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSS----FALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~-~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l----f~~~~I~svP~l~~  143 (347)
                      ||.|+.-.|+ .||+. |+....-++.        +        .+-|-.+|++++++.    .+..|-.++|.+++
T Consensus        18 Vvlf~kg~~~~~~Cp~-C~~ak~~L~~--------~--------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi   77 (111)
T 3zyw_A           18 CMLFMKGTPQEPRCGF-SKQMVEILHK--------H--------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV   77 (111)
T ss_dssp             EEEEESBCSSSBSSHH-HHHHHHHHHH--------T--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred             EEEEEecCCCCCcchh-HHHHHHHHHH--------c--------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence            5566652222 49999 6877655442        1        345677899876543    33458899999865

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=91.58  E-value=0.44  Score=42.66  Aligned_cols=25  Identities=12%  Similarity=-0.089  Sum_probs=18.9

Q ss_pred             eEEEEEecCCCCCCChhhcc-----cchHHHHHH
Q 048343           70 SILIFFDAHQLHNKPELHLQ-----ELRNEFSLV   98 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~-----~l~pefe~v   98 (347)
                      .+||.|++.|   +|++ |.     .-.|.|++.
T Consensus        50 ~vVL~F~ps~---~cp~-C~~~~~~~El~~~~~~   79 (224)
T 3keb_A           50 PKLIVTLLSV---DEDE-HAGLLLLRETRRFLDS   79 (224)
T ss_dssp             CEEEEECSCT---TCST-TTSHHHHHHHHHHHTT
T ss_pred             cEEEEEEeCC---CCCC-CCCCccHHHHHHHHHH
Confidence            5888999985   6999 78     555666654

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=91.49  E-value=0.24  Score=42.26  Aligned_cols=30  Identities=13%  Similarity=-0.055  Sum_probs=22.8

Q ss_pred             eEEEEEecCCCCCCChhhcc-cchHHHHHHHHHhhh
Q 048343           70 SILIFFDAHQLHNKPELHLQ-ELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~-~l~pefe~vA~s~~~  104 (347)
                      .++++|+++    ||++ |+ +-.|+|++.+++|.+
T Consensus        46 vvL~f~pa~----wcp~-C~~~e~p~l~~~~~~~~~   76 (173)
T 3mng_A           46 GVLFGVPGA----FTPG-CSKTHLPGFVEQAEALKA   76 (173)
T ss_dssp             EEEEECSCT----TCHH-HHHTHHHHHHHTHHHHHT
T ss_pred             EEEEEEeCC----CCCC-CCHHHHHHHHHHHHHHHh
Confidence            344455587    9999 79 577999999998853

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=91.22  E-value=0.12  Score=42.07  Aligned_cols=65  Identities=9%  Similarity=0.138  Sum_probs=40.8

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---c---
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---Q---  127 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---~---  127 (347)
                      ++|++++   +..    -|+.||.+    ||+. |++...-+++.   +  .        -.+-|..+|++..   .   
T Consensus         5 ~~~~~ii---~~~----~Vvvysk~----~Cp~-C~~ak~lL~~~---~--~--------~~v~~~~idid~~~d~~~~~   59 (127)
T 3l4n_A            5 KEYSLIL---DLS----PIIIFSKS----TCSY-SKGMKELLENE---Y--Q--------FIPNYYIIELDKHGHGEELQ   59 (127)
T ss_dssp             HHHHHHH---TSC----SEEEEECT----TCHH-HHHHHHHHHHH---E--E--------EESCCEEEEGGGSTTHHHHH
T ss_pred             HHHHHHH---ccC----CEEEEEcC----CCcc-HHHHHHHHHHh---c--c--------cCCCcEEEEecCCCCHHHHH
Confidence            5688887   322    26778887    8999 78887766652   1  0        0133556666642   1   


Q ss_pred             c-hHhHcCCCCCceEEE
Q 048343          128 S-SFALFAVNSLPHIRL  143 (347)
Q Consensus       128 ~-lf~~~~I~svP~l~~  143 (347)
                      + +.+..|-+++|.+++
T Consensus        60 ~~l~~~~G~~tVP~IfI   76 (127)
T 3l4n_A           60 EYIKLVTGRGTVPNLLV   76 (127)
T ss_dssp             HHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHcCCCCcceEEE
Confidence            2 334459999999965

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.21  E-value=0.26  Score=38.73  Aligned_cols=58  Identities=16%  Similarity=0.183  Sum_probs=35.2

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHc--------CCCCC
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALF--------AVNSL  138 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~--------~I~sv  138 (347)
                      -|++|+.+    +|+. |+..+..  .-|+.+.+++        ++-|-.+|++++++    +.+++        |-.++
T Consensus         9 ~V~vy~~~----~C~~-C~~~~~~--~~ak~~L~~~--------gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tv   73 (111)
T 2ct6_A            9 VIRVFIAS----SSGF-VAIKKKQ--QDVVRFLEAN--------KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLP   73 (111)
T ss_dssp             CEEEEECS----SCSC-HHHHHHH--HHHHHHHHHT--------TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCS
T ss_pred             EEEEEEcC----CCCC-cccchhH--HHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCC
Confidence            35667776    8999 6721110  1133343332        46788999987643    44444        78889


Q ss_pred             ceEEE
Q 048343          139 PHIRL  143 (347)
Q Consensus       139 P~l~~  143 (347)
                      |.+++
T Consensus        74 P~vfi   78 (111)
T 2ct6_A           74 PQIFN   78 (111)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            99864

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=89.26  E-value=0.46  Score=42.06  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=38.2

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc---chHhHcCCCCCceEEE
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---SSFALFAVNSLPHIRL  143 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---~lf~~~~I~svP~l~~  143 (347)
                      ..+++|+.+    ||+. |+..+..+++.                ++-|-.+|+++++   ++.+.+|..++|.+++
T Consensus       170 ~~i~ly~~~----~Cp~-C~~a~~~L~~~----------------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~  225 (241)
T 1nm3_A          170 ESISIFTKP----GCPF-CAKAKQLLHDK----------------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI  225 (241)
T ss_dssp             CCEEEEECS----SCHH-HHHHHHHHHHH----------------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             ceEEEEECC----CChH-HHHHHHHHHHc----------------CCceEEEECCCchHHHHHHHHhCCCCcCEEEE
Confidence            456778887    8999 78776665531                2445577887654   4778899999999864

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=89.17  E-value=0.15  Score=43.89  Aligned_cols=29  Identities=7%  Similarity=-0.038  Sum_probs=25.4

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      ..+||.|++.    ||++ |+.++|.++++.+.+
T Consensus        23 ~~~vvef~d~----~Cp~-C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           23 MAPVTEVFAL----SCGH-CRNMENFLPVISQEA   51 (185)
T ss_dssp             CCSEEEEECT----TCHH-HHHHGGGHHHHHHHH
T ss_pred             CCEEEEEECC----CChh-HHHhhHHHHHHHHHh
Confidence            4688999987    8999 899999999998876

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=89.15  E-value=0.25  Score=45.56  Aligned_cols=57  Identities=7%  Similarity=0.102  Sum_probs=39.4

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEE--EEEE-cc---------------CCcchHh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFF--CYLE-FK---------------ESQSSFA  131 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F--~~vD-~~---------------~~~~lf~  131 (347)
                      ..|.+||.+    +|+. |...+.-+++.+.++            ++.-  +.+| .+               +.+++.+
T Consensus        44 ~~VelyTs~----gCp~-C~~Ak~lL~~~~~~~------------~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~  106 (270)
T 2axo_A           44 GVVELFTSQ----GCAS-CPPADEALRKMIQKG------------DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMR  106 (270)
T ss_dssp             CEEEEEECT----TCTT-CHHHHHHHHHHHHHT------------SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEEeCC----CCCC-hHHHHHHHHHhhccC------------CeeeEEEEEEEecccccccchhhhhhhHHHHHHHH
Confidence            567789998    8999 799999888887653            2211  1222 11               1234777


Q ss_pred             HcCCCCC--ceEEE
Q 048343          132 LFAVNSL--PHIRL  143 (347)
Q Consensus       132 ~~~I~sv--P~l~~  143 (347)
                      ++|.+++  |.+++
T Consensus       107 ~~G~~tVyTPqI~I  120 (270)
T 2axo_A          107 ALGRNGVYTPQAIL  120 (270)
T ss_dssp             HTTCSCCCSSEEEE
T ss_pred             HhCCCcccCCEEEE
Confidence            8999999  99877

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=88.79  E-value=0.71  Score=39.02  Aligned_cols=41  Identities=2%  Similarity=-0.122  Sum_probs=30.9

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      -.+|+.|+..    +|++ |..+.|+++++.+.+          .+++.|..+.+.
T Consensus        26 ~v~i~~f~d~----~Cp~-C~~~~~~l~~l~~~~----------~~~v~~~~~p~~   66 (193)
T 2rem_A           26 KIEVVEIFGY----TCPH-CAHFDSKLQAWGARQ----------AKDVRFTLVPAV   66 (193)
T ss_dssp             CEEEEEEECT----TCHH-HHHHHHHHHHHHHTS----------CTTEEEEEEECC
T ss_pred             CeEEEEEECC----CChh-HhhhhHHHHHHHHhc----------CCceEEEEeCcc
Confidence            3577888887    8999 899999998877654          236777666654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=88.72  E-value=0.15  Score=44.03  Aligned_cols=29  Identities=7%  Similarity=-0.032  Sum_probs=22.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHH---HHHHHHh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEF---SLVASSF  102 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~  102 (347)
                      -.+||.|+..    +|++ |+.++|++   +++.+.+
T Consensus        22 ~~~vvef~d~----~Cp~-C~~~~~~l~~~~~l~~~~   53 (191)
T 3l9s_A           22 EPQVLEFFSF----YCPH-CYQFEEVLHVSDNVKKKL   53 (191)
T ss_dssp             SSCEEEEECT----TCHH-HHHHHHTSCHHHHHHHHS
T ss_pred             CCeEEEEECC----CChh-HHHhChhccchHHHHHhC
Confidence            3578888887    8999 89999986   5666554

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=88.00  E-value=0.93  Score=36.21  Aligned_cols=58  Identities=9%  Similarity=0.043  Sum_probs=36.2

Q ss_pred             EEEEecCC-CCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc----hHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQ-LHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS----SFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~-~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~----lf~~~~I~svP~l~~  143 (347)
                      ||.|+-+. ...||+. |+.....++...-             ..-.|-.+|++++++    +.+..|-.++|.+++
T Consensus        18 Vvvfsk~t~~~p~Cp~-C~~ak~lL~~~gv-------------~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI   80 (121)
T 3gx8_A           18 VVLFMKGTPEFPKCGF-SRATIGLLGNQGV-------------DPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYV   80 (121)
T ss_dssp             EEEEESBCSSSBCTTH-HHHHHHHHHHHTB-------------CGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEE
T ss_pred             EEEEEeccCCCCCCcc-HHHHHHHHHHcCC-------------CcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            44555532 2358999 7888776654210             011277888887653    444558999999965

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=85.87  E-value=1.2  Score=35.88  Aligned_cols=58  Identities=10%  Similarity=0.012  Sum_probs=37.9

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHc--------CCCCC
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALF--------AVNSL  138 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~--------~I~sv  138 (347)
                      +|+.||++    .|+. |+-.+.  ..-|+.+.+.        .+|-|-.+|++.++    ++.++.        |-.++
T Consensus         1 ~V~vYtt~----~c~~-c~~kk~--c~~aK~lL~~--------kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tv   65 (121)
T 1u6t_A            1 VIRVYIAS----SSGS-TAIKKK--QQDVLGFLEA--------NKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLP   65 (121)
T ss_dssp             CEEEEECT----TCSC-HHHHHH--HHHHHHHHHH--------TTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCS
T ss_pred             CEEEEecC----CCCC-ccchHH--HHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHhccccccccCCCcCC
Confidence            35667776    7999 542222  1334555543        46889999998654    456676        78899


Q ss_pred             ceEEE
Q 048343          139 PHIRL  143 (347)
Q Consensus       139 P~l~~  143 (347)
                      |.|++
T Consensus        66 PQIFi   70 (121)
T 1u6t_A           66 PQIFN   70 (121)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            98775

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=84.49  E-value=0.99  Score=37.50  Aligned_cols=29  Identities=3%  Similarity=-0.046  Sum_probs=23.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      -.+||.|..-    .||+ |+.++|.+.++.+.+
T Consensus        22 ~~~vvEf~dy----~Cp~-C~~~~~~~~~l~~~~   50 (184)
T 4dvc_A           22 SPVVSEFFSF----YCPH-CNTFEPIIAQLKQQL   50 (184)
T ss_dssp             SCEEEEEECT----TCHH-HHHHHHHHHHHHHTS
T ss_pred             CCEEEEEECC----CCHh-HHHHhHHHHHHHhhc
Confidence            3578888865    8999 799999988777654

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=82.62  E-value=3  Score=36.95  Aligned_cols=95  Identities=13%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------  122 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------  122 (347)
                      ..++|++|+-.+   ||+. |..-.+.|++..+++.+..       -.|.-..+|                         
T Consensus        52 GK~vVL~FyP~d---~Tpv-Ct~E~~~f~~~~~~f~~~g-------~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpl  120 (216)
T 3sbc_A           52 GKYVVLAFIPLA---FTFV-SPTEIIAFSEAAKKFEEQG-------AQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPL  120 (216)
T ss_dssp             TSEEEEEECSCT---TSSH-HHHHHHHHHHHHHHHHHTT-------EEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCE
T ss_pred             CCeEEEEEEcCC---CCCc-CchhhhHHHHhHHhhccCC-------ceEEEeecCchhhHHHHHHHHHHhCCccCcccce
Confidence            346888887333   9999 7888899999888885421       112222222                         


Q ss_pred             -ccCCcchHhHcCCC------CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          123 -FKESQSSFALFAVN------SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       123 -~~~~~~lf~~~~I~------svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                       .|...++.+.||+-      +.+..++.-|. |...  ....+....+++.+++.+-|..
T Consensus       121 lsD~~~~vak~YGv~~~~~g~~~R~tFiID~~-G~Ir--~~~v~~~~~grn~dEiLr~l~A  178 (216)
T 3sbc_A          121 LADTNHSLSRDYGVLIEEEGVALRGLFIIDPK-GVIR--HITINDLPVGRNVDEALRLVEA  178 (216)
T ss_dssp             EECTTSHHHHHHTCEETTTTEECEEEEEECTT-SBEE--EEEEECTTBCCCHHHHHHHHHH
T ss_pred             EeCCCCHHHHHcCCeeccCCceeeEEEEECCC-CeEE--EEEEcCCCCCCCHHHHHHHHHH
Confidence             12345778888872      35677777764 4432  1111112235677776665543

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=80.11  E-value=2.5  Score=36.53  Aligned_cols=44  Identities=14%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHH-HHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEF-SLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pef-e~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .-.+|+.|...    .|+. |++++|+. ..+.+.|.        +.++|.|...++.
T Consensus        29 a~vtvvef~D~----~CP~-C~~~~~~~~~~l~~~~~--------~~g~v~~~~~~~p   73 (202)
T 3gha_A           29 APVTVVEFGDY----KCPS-CKVFNSDIFPKIQKDFI--------DKGDVKFSFVNVM   73 (202)
T ss_dssp             CSEEEEEEECT----TCHH-HHHHHHHTHHHHHHHTT--------TTTSEEEEEEECC
T ss_pred             CCEEEEEEECC----CChh-HHHHHHHhhHHHHHHhc--------cCCeEEEEEEecC
Confidence            34667778776    8999 79999986 55655553        2357888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.8
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.79
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.78
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.77
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.77
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.75
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.72
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.72
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.68
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.67
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.65
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.64
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.63
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.61
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.6
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.59
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.58
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.57
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.56
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.54
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.54
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.54
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.53
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.46
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.45
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.45
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.36
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.35
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.25
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.24
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.06
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.64
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.44
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.42
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.35
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.35
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.34
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.28
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.27
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.2
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.2
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.14
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.06
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.03
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	97.92
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.92
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.81
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.74
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.25
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	96.96
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.54
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.25
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.86
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	95.76
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	95.48
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	95.45
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	95.23
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	95.06
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	94.72
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	94.53
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.04
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	94.01
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	93.79
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.49
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	93.45
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	92.96
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	92.61
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	92.33
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	90.43
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	90.06
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	88.68
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	88.08
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	87.22
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	87.16
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	86.82
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	86.35
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	85.39
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	82.98
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	81.69
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	80.09

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.8e-19  Score=146.33  Aligned_cols=109  Identities=13%  Similarity=0.240  Sum_probs=92.6

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|++||++||++++   ++  +..++|.|||+    ||++ |+++.|+|+++|+.+.         ++++.|+++|+++
T Consensus        10 s~v~~lt~~~f~~~i---~~--~~~~lV~fya~----wC~~-C~~~~~~~~~la~~~~---------~~~v~~~~vd~~~   70 (119)
T d2b5ea4          10 SAVVKLATDSFNEYI---QS--HDLVLAEFFAP----WCGH-CKNMAPEYVKAAETLV---------EKNITLAQIDCTE   70 (119)
T ss_dssp             SSCEECCTTTHHHHH---TT--CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHTT---------TTTCEEEEEETTT
T ss_pred             CccEEcCHHHHHHHH---hc--CCeEEEEEECC----ccCc-ccccchhhhhhhhhhc---------ccceeeeeeeccc
Confidence            479999999999998   33  33689999999    8999 8999999999999873         2469999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++++++|+++|++++|+.|  +..    ....|.+.++.++|.+||+++++
T Consensus        71 ~~~l~~~~~v~~~Pti~~f~~g--~~~----~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          71 NQDLCMEHNIPGFPSLKIFKNS--DVN----NSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETT--CTT----CEEECCSCCSHHHHHHHHHHHTS
T ss_pred             hHHHHHHhccccCCeEEEEECC--EEe----eeEEecCCCCHHHHHHHHHHhhC
Confidence            9999999999999999999864  221    12345678899999999999876

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.79  E-value=3e-19  Score=142.19  Aligned_cols=106  Identities=19%  Similarity=0.312  Sum_probs=90.6

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .+|++||++||++.+  .++  +..++|.|||+    ||++ |+++.|.++++|+.+          .+++.|+++|+++
T Consensus         2 ~~V~~lt~~~f~~~v--~~~--~~~vlv~f~a~----wC~~-C~~~~~~~~~~~~~~----------~~~~~~~~vd~d~   62 (108)
T d1thxa_           2 KGVITITDAEFESEV--LKA--EQPVLVYFWAS----WCGP-CQLMSPLINLAANTY----------SDRLKVVKLEIDP   62 (108)
T ss_dssp             CSEEECCGGGHHHHT--TTC--SSCEEEEEECT----TCTT-HHHHHHHHHHHHHHT----------TTTCEEEEEESTT
T ss_pred             CCceECCHHHHHHHH--HhC--CCcEEEEEECC----CCCC-ccccchHHHHHHHhc----------CCcceeceecccc
Confidence            479999999999876  244  33689999998    8999 899999999999876          2468999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++++|+|+++||+++|+.  |+.      ..++.|.++.++|.+||++++
T Consensus        63 ~~~l~~~~~I~~~Pt~~~~~~--g~~------v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          63 NPTTVKKYKVEGVPALRLVKG--EQI------LDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             CHHHHHHTTCCSSSEEEEEET--TEE------EEEEESCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHhcccCCCEEEEEEC--CEE------EEEEeCCCCHHHHHHHHHHhc
Confidence            999999999999999999985  333      255667789999999999875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=145.01  Aligned_cols=113  Identities=17%  Similarity=0.208  Sum_probs=95.5

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .++|+.||++||++.+   ++  +..++|.|||+    ||++ |+.+.|+|+++++.+...       +.++.|+++|++
T Consensus         6 ~~~V~~l~~~~f~~~l---~~--~k~vlV~Fya~----wC~~-C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~~   68 (120)
T d1meka_           6 EDHVLVLRKSNFAEAL---AA--HKYLLVEFYAP----WCGH-CKALAPEYAKAAGKLKAE-------GSEIRLAKVDAT   68 (120)
T ss_dssp             ETTEEECCTTTHHHHH---HH--CSEEEEEEECS----SCST-TSTTHHHHHHHHHTTTTT-------CCCCBCEEEETT
T ss_pred             CCCeEEcCHHHHHHHH---hc--CCcEEEEEECC----CcCC-ccccchhhhhhccccccc-------ccceeeeccccc
Confidence            4679999999999987   33  33789999999    8999 899999999999887432       357999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++++++++|+++||+++|++|...      ....|.+.++.++|.+||++++|-
T Consensus        69 ~~~~l~~~~~i~~~Pt~~~~~~G~~~------~~~~~~g~~~~~~l~~fi~~~~~p  118 (120)
T d1meka_          69 EESDLAQQYGVRGYPTIKFFRNGDTA------SPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             TCCSSHHHHTCCSSSEEEEEESSCSS------SCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             cchhHHHHhCCccCCeEEEEECCeEe------eeEEecCCCCHHHHHHHHHHhhCC
Confidence            99999999999999999999875321      124567789999999999999883

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=9.9e-19  Score=139.05  Aligned_cols=106  Identities=17%  Similarity=0.220  Sum_probs=90.9

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|++||++||++.+  .++  +..++|.|||+    ||++ |+++.|.++++|+.+          .+++.|+++|+++
T Consensus         2 ~~v~~lt~~~f~~~v--~~~--~~~v~v~F~a~----wC~~-C~~~~~~~~~~a~~~----------~~~~~~~~vd~d~   62 (108)
T d2trxa_           2 DKIIHLTDDSFDTDV--LKA--DGAILVDFWAE----WCGP-CKMIAPILDEIADEY----------QGKLTVAKLNIDQ   62 (108)
T ss_dssp             TTEEECCTTTHHHHT--TTC--SSEEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTEEEEEEETTT
T ss_pred             CCceECCHHHHHHHH--HhC--CCcEEEEEECC----CCCC-ccccCcHHHHHHHHh----------hcceeeeeccccc
Confidence            679999999999876  233  45799999999    8999 899999999999875          3579999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++++|+++++||+++|+.  |+.      ..++.|.+++++|.+||++++
T Consensus        63 ~~~l~~~~~v~~~PT~~~~~~--G~~------v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          63 NPGTAPKYGIRGIPTLLLFKN--GEV------AATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             CTTHHHHTTCCSSSEEEEEET--TEE------EEEEESCCCHHHHHHHHHHHH
T ss_pred             hhhHHHHhCCCcEEEEEEEEC--CEE------EEEEeCCCCHHHHHHHHHHhc
Confidence            999999999999999999985  333      245667789999999998864

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.5e-18  Score=141.46  Aligned_cols=113  Identities=16%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .|+|+||++||++.+   ++  +-+++|.|+|+    ||++ |+  .|+|+++|++..+.       .+++.+++||+++
T Consensus         2 ~g~v~L~~~nFd~~v---~~--~~~~lV~Fya~----wC~~-ck--~p~f~kla~~~~~~-------~~~v~ia~Vd~~~   62 (122)
T d2c0ga2           2 TGCVDLDELSFEKTV---ER--FPYSVVKFDIA----SPYG-EK--HEAFTAFSKSAHKA-------TKDLLIATVGVKD   62 (122)
T ss_dssp             TTCEECCTTTHHHHH---TT--SSEEEEEEEES----SCCS-HH--HHHHHHHHHHHHHH-------CSSEEEEEEEECS
T ss_pred             CceEEcChHhHHHHH---hc--CCcEEEEEECC----CCCc-cc--CHHHHHHHHHHHHh-------CCCeEEEeccccc
Confidence            489999999999998   33  23799999999    8999 79  59999999987654       3579999999964


Q ss_pred             -----CcchHhHcCC--CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          126 -----SQSSFALFAV--NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       126 -----~~~lf~~~~I--~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                           ++++.+++++  +++||+++|+++...     .....+++.+++++|.+||++++|..+
T Consensus        63 ~~~~~n~~l~~~~~i~~~~~PTi~~f~~g~~~-----~~~~~~~g~rt~~~l~~fv~~~~~~~~  121 (122)
T d2c0ga2          63 YGELENKALGDRYKVDDKNFPSIFLFKGNADE-----YVQLPSHVDVTLDNLKAFVSANTPLYI  121 (122)
T ss_dssp             STTCTTHHHHHHTTCCTTSCCEEEEESSSSSS-----EEECCTTSCCCHHHHHHHHHHHSSCCC
T ss_pred             cccccCHHHHHHhhcccCCCCcEEEEeCCccc-----ccccccCCCCCHHHHHHHHHHhcCccc
Confidence                 5789999999  579999999975322     223456778999999999999999754

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.75  E-value=3.6e-18  Score=134.85  Aligned_cols=104  Identities=16%  Similarity=0.159  Sum_probs=88.9

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |.+|||+||++.+  .++  +..++|.|||+    ||++ |+.+.|.++++++.+          .+++.|+++|.++++
T Consensus         1 v~el~d~~f~~~v--~~~--~~~vlv~F~a~----wC~~-C~~~~~~~~~l~~~~----------~~~~~~~~v~~d~~~   61 (104)
T d1fb6a_           1 VQDVNDSSWKEFV--LES--EVPVMVDFWAP----WCGP-CKLIAPVIDELAKEY----------SGKIAVYKLNTDEAP   61 (104)
T ss_dssp             CEECCTTTHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEETTTCH
T ss_pred             CeECchhhHHHHH--HcC--CCcEEEEEEcC----ccCC-ccccCchhHHHHHhh----------cCccceeEEecccch
Confidence            5789999999987  333  45799999999    8999 899999999999886          246789999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++|+|+++||+++|+.  |+..      .++.|.+++++|.+||++++
T Consensus        62 ~l~~~~~V~~~Pt~~~~~~--G~~v------~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          62 GIATQYNIRSIPTVLFFKN--GERK------ESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             HHHHHTTCCSSSEEEEEET--TEEE------EEEEECCCHHHHHHHHHHHC
T ss_pred             hhhhhcceeeeeEEEEEEc--CeEE------EEEeCCCCHHHHHHHHHHhC
Confidence            9999999999999999975  3432      55667789999999999864

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.72  E-value=9.6e-18  Score=132.65  Aligned_cols=103  Identities=15%  Similarity=0.083  Sum_probs=88.2

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      .++||++||++.+   ++  +..++|.|||+    ||++ |+.+.|.++++|+.+          .+++.|+++|+++++
T Consensus         2 ~i~lt~~~f~~~i---~~--~k~vvv~F~a~----wC~~-C~~~~~~~~~l~~~~----------~~~~~~~~vd~~~~~   61 (105)
T d1nw2a_           2 TMTLTDANFQQAI---QG--DKPVLVDFWAA----WCGP-CRMMAPVLEEFAEAH----------ADKVTVAKLNVDENP   61 (105)
T ss_dssp             CEEECTTTHHHHT---TS--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHH----------TTTCEEEEEETTTCH
T ss_pred             EEEECHHHHHHHH---hC--CCcEEEEEECC----CCCC-cccccchhhhhhhhc----------CCceEEEEEECCCCc
Confidence            5899999999987   44  33799999999    8999 899999999999987          246999999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++|+|+++||+++|+.  |+..      .++.|..+.++|.++|++.+
T Consensus        62 ~~~~~~~V~~~Pt~~~~~~--G~~~------~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          62 ETTSQFGIMSIPTLILFKG--GEPV------KQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             HHHHHTTCCBSSEEEEEET--TEEE------EEEESCCCHHHHHHHTTTTC
T ss_pred             ccHHHCCcceeeEEEEEEC--CEEE------EEEECCCCHHHHHHHHHHHh
Confidence            9999999999999999985  3332      45567788999999987754

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.72  E-value=1.5e-17  Score=131.97  Aligned_cols=105  Identities=16%  Similarity=0.103  Sum_probs=89.1

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      +..+|++||++.+  .+.  +..++|.|||+    ||++ |+.+.|+++++++.+          .+++.|+++|+|+++
T Consensus         3 ~~~i~~~~f~~~v--~~s--~kpvlv~F~a~----wC~~-C~~~~p~~~~~~~~~----------~~~~~~~~vd~d~~~   63 (107)
T d1dbya_           3 AGAVNDDTFKNVV--LES--SVPVLVDFWAP----WCGP-CRIIAPVVDEIAGEY----------KDKLKCVKLNTDESP   63 (107)
T ss_dssp             CEEECHHHHHHHT--TTC--SSCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTCEEEEEETTTCH
T ss_pred             ceEecHHHHHHHH--HhC--CCcEEEEEECC----CCCC-ccccChHHHHHHHhh----------cccceEEEEecccch
Confidence            5788999999987  343  44799999999    8999 899999999999876          246899999999999


Q ss_pred             chHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          128 SSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       128 ~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++.++|+|+++||+++|..  |+..      .++.|..+.++|.+||++.++
T Consensus        64 ~l~~~~~V~~~Pt~~~~~~--G~~v------~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          64 NVASEYGIRSIPTIMVFKG--GKKC------ETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             HHHHHHTCCSSCEEEEESS--SSEE------EEEESCCCHHHHHHHHHHHCC
T ss_pred             hHHHHhcccceEEEEEEEC--CeEE------EEEeCCCCHHHHHHHHHHhhC
Confidence            9999999999999999985  3432      455677899999999998763

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=5e-17  Score=135.10  Aligned_cols=114  Identities=13%  Similarity=0.211  Sum_probs=90.8

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++.|++|+++||++++  .+.  +..++|+|+|+    ||++ |+++.|+|+++|+.+...       ...+.|+.+|.+
T Consensus        11 ~~~V~~l~~~nf~~~v--~~~--~k~vlV~F~a~----wC~~-C~~~~p~~~~la~~~~~~-------~~~v~~~~~d~~   74 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIV--NDP--KKDVLVLYYAP----WCGH-CKRLAPTYQELADTYANA-------TSDVLIAKLDHT   74 (140)
T ss_dssp             SCSEEEECTTTHHHHH--HCT--TCCEEEEEECT----TCHH-HHHHHHHHHHHHHHHHHH-------CSSCEEEEEEGG
T ss_pred             CCCcEEecCcCHHHHH--hcC--CCCEEEEEEec----cCcc-cchhHHHHHHHHHHHhcc-------ccceEEEeeecc
Confidence            3569999999999998  233  34799999999    8999 899999999999998532       235777777765


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                        ++++++++|+++||+++|++|.  ..    ....|.|.+++++|.+||+++++..+
T Consensus        75 --~~~~~~~~v~~~Ptl~~f~~g~--~~----~~~~y~G~~t~~~l~~fi~~~~~~~~  124 (140)
T d2b5ea1          75 --ENDVRGVVIEGYPTIVLYPGGK--KS----ESVVYQGSRSLDSLFDFIKENGHFDV  124 (140)
T ss_dssp             --GCCCSSCCCSSSSEEEEECCTT--SC----CCCBCCSCCCHHHHHHHHHHHCTTCC
T ss_pred             --chhccccccccCCeEEEEECCE--Ec----ceeEeCCCCCHHHHHHHHHHcCCCCC
Confidence              4578999999999999999753  21    12346778999999999999877554

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.67  E-value=1.1e-16  Score=130.34  Aligned_cols=113  Identities=10%  Similarity=0.086  Sum_probs=84.7

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++.|++||++||++++   ++.  -.++|+|+|+    ||++ | .+.|+++.++..+.....  ...+..+.|+++|++
T Consensus        10 ~~~V~~L~~~nf~~~l---~~~--~~~~V~Fyap----wC~~-~-~~~~~~~~~~~~~~~~a~--~~~~~~v~~a~Vd~~   76 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVF---KKY--EVLALLYHEP----PEDD-K-ASQRQFEMEELILELAAQ--VLEDKGVGFGLVDSE   76 (124)
T ss_dssp             CCCCEECCTTTHHHHH---HHC--SEEEEEEECC----CCSS-H-HHHHHHHHHHHHHHHHHH--HTGGGTEEEEEEETT
T ss_pred             CCccEECCHHHHHHHH---HhC--CeEEEEEECC----Cccc-h-hhhhHHHHHHHHHHHHHH--HhccCCeEEEEEEee
Confidence            4569999999999998   332  2689999999    8985 4 345555555544432100  001235999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      ++++++++++|+++||+++|+.+  +.       ..|.|.++++.|.+||.+...
T Consensus        77 ~~~~l~~~~~I~~yPTi~~f~~g--~~-------~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          77 KDAAVAKKLGLTEEDSIYVFKED--EV-------IEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             TSHHHHHTTTCCSTTCEEEEESS--SE-------EECCSCCSHHHHHHHHHHHHS
T ss_pred             cccchhhccccccCCcEEEeccC--cc-------EEeeCCCCHHHHHHHHHHhcC
Confidence            99999999999999999999863  32       357788999999999988754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.65  E-value=7.8e-17  Score=129.12  Aligned_cols=112  Identities=14%  Similarity=0.159  Sum_probs=84.9

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      +.|.+|+++||++++  .++  +..++|+|||+    ||++ |+++.|+|+++|+.+....     ....+.+...|.++
T Consensus         2 g~V~~lt~~nF~~~v--~~~--~k~vlV~fya~----wC~~-Ck~~~p~~~~la~~~~~~~-----~~~~~~~~~~~~~~   67 (116)
T d2djja1           2 GPVTVVVAKNYNEIV--LDD--TKDVLIEFYAP----WCGH-CKALAPKYEELGALYAKSE-----FKDRVVIAKVDATA   67 (116)
T ss_dssp             CSSEECCTTTTTTSS--SCT--TSCEEEEEECS----SCTT-HHHHHHHHHHHHHHHTTSS-----CTTSSEEEEEETTT
T ss_pred             cCcEEcccCCHHHHH--hcC--CCCEEEEEEec----cccc-ccccchHHHHHHHHHhccc-----ccceeEEEecccch
Confidence            459999999999987  333  45799999999    8999 8999999999999985431     12235555555544


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      .   ..+++|+++||+++|+.+...      +...|.+.++.++|.+||+++...
T Consensus        68 ~---~~~~~v~~~Pti~~f~~g~~~------~~~~~~g~~~~~~l~~fi~~~~~~  113 (116)
T d2djja1          68 N---DVPDEIQGFPTIKLYPAGAKG------QPVTYSGSRTVEDLIKFIAENGKY  113 (116)
T ss_dssp             S---CCSSCCSSSSEEEEECSSCTT------SCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             h---hhcccccCCCEEEEEECCccC------ceEEecCCCCHHHHHHHHHHccCc
Confidence            3   457899999999999875311      123456789999999999997654

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.64  E-value=2.8e-16  Score=126.14  Aligned_cols=105  Identities=9%  Similarity=0.141  Sum_probs=86.1

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ...|+++|+++|++.+   +...+..++|.|||+    ||++ |+.+.|.|+++|+.+           .++.|+++|++
T Consensus         5 ~g~v~~~~~d~f~~~l---~~~~~k~vvv~f~a~----wC~~-C~~~~p~~~~l~~~~-----------~~v~~~~vd~~   65 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIV---KAAGDKPVVLDMFTQ----WCGP-CKAMAPKYEKLAEEY-----------LDVIFLKLDCN   65 (112)
T ss_dssp             TTSEEEECTTTHHHHH---HTCTTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEECS
T ss_pred             ceeeEEeCHHHHHHHH---HHcCCCEEEEEEEcC----CCcc-hHHHHHHHhhhcccc-----------ccceeeccccc
Confidence            3569999999999998   333455799999999    8999 899999999999876           14789999997


Q ss_pred             C-CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          125 E-SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       125 ~-~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      + +++++++|+|+++||+++|+.  |+..      +++.| .+.+++.++|++.
T Consensus        66 ~~~~~l~~~~~V~~~Pt~~~~k~--G~~v------~~~~G-~~~~~l~e~i~~~  110 (112)
T d1f9ma_          66 QENKTLAKELGIRVVPTFKILKE--NSVV------GEVTG-AKYDKLLEAIQAA  110 (112)
T ss_dssp             STTHHHHHHHCCSSSSEEEEEET--TEEE------EEEES-SCHHHHHHHHHHH
T ss_pred             ccchhhHhheeeccCCEEEEEEC--CEEE------EEEeC-CCHHHHHHHHHHc
Confidence            5 789999999999999999975  3432      34444 4678899999875

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.63  E-value=3e-16  Score=125.79  Aligned_cols=109  Identities=11%  Similarity=0.139  Sum_probs=87.5

Q ss_pred             CCeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ++|+.+ |+++|++.+.. ....+-.++|.|+|+    ||++ |+.+.|.++++|+.+          .+++.|+++|++
T Consensus         2 g~v~~i~t~~~fd~~l~~-~~~~~k~vvv~f~a~----wC~~-C~~~~p~~~~l~~~~----------~~~v~~~~vd~d   65 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAK-GKEEHKPIVVDFTAT----WCGP-CKMIAPLFETLSNDY----------AGKVIFLKVDVD   65 (112)
T ss_dssp             CSEEEECSHHHHHHHHHH-HHHHTCCEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTSEEEEEETT
T ss_pred             CCEEEEeCHHHHHHHHHH-HhhcCCeEEEEEEcC----CcCC-Ccccchhhhhhhhcc----------cceEEEEEeecc
Confidence            468999 67899888731 111234689999999    8999 899999999999886          246999999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++++.++|+++++||+++|+.  |+..      .++.| .+.++|.+||+++..
T Consensus        66 ~~~~l~~~~~v~~~Pt~~~~~~--G~~v------~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          66 AVAAVAEAAGITAMPTFHVYKD--GVKA------DDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             TTHHHHHHHTCCBSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHHHC
T ss_pred             ccccccccccccCCCEEEEEEC--CEEE------EEEeC-cCHHHHHHHHHHHhC
Confidence            9999999999999999999984  3432      33344 578999999998753

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=121.05  Aligned_cols=103  Identities=13%  Similarity=0.115  Sum_probs=83.2

Q ss_pred             eEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |-.+ |+++|++.+.   ...+..++|.|+|+    ||++ |+.+.|.|+++|+++           .++.|+++|++++
T Consensus         3 v~~i~s~~~f~~~l~---~~~~klvvv~F~a~----wC~~-Ck~~~p~~~~la~~~-----------~~~~f~~vd~d~~   63 (107)
T d1gh2a_           3 VKPVGSDPDFQPELS---GAGSRLAVVKFTMR----GCGP-CLRIAPAFSSMSNKY-----------PQAVFLEVDVHQC   63 (107)
T ss_dssp             EEEECSGGGHHHHHH---HTTTSCEEEEEECS----SCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEETTTS
T ss_pred             eEEcCCHHHHHHHHH---hCCCCEEEEEEECC----CCCC-ccccchhhhcccccc-----------ccccccccccccc
Confidence            4444 6789999872   22244689999999    8999 899999999999875           1478999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++.++++|+++||+++|..  |+..      ++..| .++++|.++|++++
T Consensus        64 ~~l~~~~~v~~~Pt~~~~~~--G~~v------~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          64 QGTAATNNISATPTFQFFRN--KVRI------DQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             HHHHHHTTCCSSSEEEEEET--TEEE------EEEES-SCHHHHHHHHHHHH
T ss_pred             hhhhhhcCceeceEEEEEEC--CEEE------EEEeC-CCHHHHHHHHHHhh
Confidence            99999999999999999985  3332      44454 47899999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=120.63  Aligned_cols=102  Identities=10%  Similarity=0.122  Sum_probs=81.9

Q ss_pred             eEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC
Q 048343           48 VIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES  126 (347)
Q Consensus        48 VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~  126 (347)
                      |.++ +.++|++.+   +...+..++|.|||+    ||++ |+.+.|.++++++.+           +++.|+++|.+++
T Consensus         2 v~~i~s~~~f~~~l---~~~~~k~vvv~F~a~----wC~~-C~~~~p~~~~l~~~~-----------~~~~~~~vd~d~~   62 (105)
T d2ifqa1           2 VKQIESKTAFQEAL---DAAGDKLVVVDFSAT----WCGP-CKMIKPFFHSLSEKY-----------SNVIFLEVDVDDC   62 (105)
T ss_dssp             CEEECSHHHHHHHH---HHTTTSCEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEETTTC
T ss_pred             eEEcCCHHHHHHHH---HhCCCCEEEEEEEcC----Cccc-hhhhhhhhhhhcccc-----------ccceeeecccccC
Confidence            4456 457899988   333355799999999    8999 899999999999875           2357999999999


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++.++++|+++||+++|+.  |+..      .++.| .+.+++.++|++.
T Consensus        63 ~~~~~~~~V~~~Pt~~~~~~--G~~v------~~~~G-~~~~~l~~~i~~~  104 (105)
T d2ifqa1          63 QDVASECEVKCMPTFQFFKK--GQKV------GEFSG-ANKEKLEATINEL  104 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHH
T ss_pred             HhHHHHcCceEEEEEEEEEC--CEEE------EEEeC-CCHHHHHHHHHhh
Confidence            99999999999999999985  3432      44454 4688999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=2.1e-15  Score=120.23  Aligned_cols=108  Identities=14%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             CCCCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE
Q 048343           44 SEAGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE  122 (347)
Q Consensus        44 s~~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD  122 (347)
                      +...|.++++ ++|++.+.  + ..+..++|.|||+    ||++ |+.+.|.|+++++.+          .+++.|+++|
T Consensus         3 ~~~~v~~i~~~~~~~~~l~--~-~~~k~vlv~f~a~----wC~~-C~~~~p~~~~l~~~~----------~~~~~~~~i~   64 (111)
T d1xwaa_           3 AAAMVYQVKDKADLDGQLT--K-ASGKLVVLDFFAT----WCGP-CKMISPKLVELSTQF----------ADNVVVLKVD   64 (111)
T ss_dssp             CSCCEEECCSHHHHHHHHH--H-HTTSEEEEEEECT----TCHH-HHHHHHHHHHHHHHT----------TTTEEEEEEE
T ss_pred             CCCeEEEECCHHHHHHHHH--h-cCCCEEEEEEECC----cccC-ccccchhHHHHhhhc----------ccceEEEEEE
Confidence            3456889966 68998872  2 2345799999999    8999 899999999999876          3469999999


Q ss_pred             ccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          123 FKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       123 ~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++++.++|+|+++||+++|+.  |+..      .++.| .+.++|.+||++++
T Consensus        65 ~d~~~~l~~~~~V~~~Pt~~~~~~--G~~v------~~~~G-~~~~~l~~~I~~~l  111 (111)
T d1xwaa_          65 VDECEDIAMEYNISSMPTFVFLKN--GVKV------EEFAG-ANAKRLEDVIKANI  111 (111)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHTC
T ss_pred             eecCcchhhcCCCccccEEEEEEC--CEEE------EEEeC-CCHHHHHHHHHhcC
Confidence            999999999999999999999975  3332      33444 45788999998863

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.1e-15  Score=122.51  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=84.4

Q ss_pred             CCCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           45 EAGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        45 ~~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      .+|+|+||++||++++   +.  +-+++|.|+|+    ||.. |.  .|+|+++|+.|.+...   ...++|-++++|.+
T Consensus         3 ~~~~v~L~~~nFd~~i---~~--~~~~lV~F~~~----wc~~-~~--~~~~~~la~~~~~~~~---~~~~~V~~~~vd~~   67 (122)
T d1g7ea_           3 TKGALPLDTVTFYKVI---PK--SKFVLVKFDTQ----YPYG-EK--QDEFKRLAENSASSDD---LLVAEVGISDYGDK   67 (122)
T ss_dssp             CSSSCSCSHHHHHHHG---GG--SSEEEEEEECS----SCCT-TT--THHHHHHHHHGGGCSS---EEEEEEESCCTTSC
T ss_pred             CCceEECCHHhHHHHH---hh--CCeEEEEEecC----CcCc-cc--CHHHHHHHHHHHHHHH---Hhhhccceeecccc
Confidence            3689999999999998   33  23799999999    7866 55  5999999999865320   00123445555666


Q ss_pred             CCcchHhHcC--CCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFA--VNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~--I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++.++++  |+++||+++|++|...      ....|++.+++++|.+||+++.
T Consensus        68 ~n~~l~~~~~~~I~~yPTi~~f~~G~~~------~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          68 LNMELSEKYKLDKESYPVFYLFRDGDFE------NPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             HHHHHHHHHTCSSSSCEEEEEEESSCCC------CCEEEESCCCHHHHHHHHHTTS
T ss_pred             ccHHHHHhhcccccCCCeEEEEecCccc------CceecCCCCCHHHHHHHHHhcc
Confidence            7788998865  7799999999986322      2245678899999999999874

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=2.1e-15  Score=121.01  Aligned_cols=107  Identities=11%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             CCeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           46 AGVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        46 ~~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..||.+ +.++|++.+. ....++-.++|.|||+    ||++ |+.+.|.++++++.+           +++.|+++|.+
T Consensus         6 ~~vi~i~s~~~~~~~~~-~~~~~~~~vlv~F~a~----wC~~-C~~~~p~~~~l~~~~-----------~~~~~~~vd~~   68 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQ-KANESKTLVVVDFTAS----WCGP-CRFIAPFFADLAKKL-----------PNVLFLKVDTD   68 (114)
T ss_dssp             SCCEEESSHHHHHHHHH-HHHHTTCEEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------SSEEEEEEETT
T ss_pred             CcEEEEcCHHHHHHHHH-HhhccCCeEEEEEEcC----CCCC-ccccccchhhhcccc-----------cccceeEEEee
Confidence            458888 7788988762 1112345788999999    8999 899999999999865           24889999999


Q ss_pred             CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          125 ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       125 ~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++++++++|+|+++||+++|..  |+..      .+..| .+.++|.+||++++
T Consensus        69 ~~~~l~~~~~V~~~Pt~~~~~~--G~~v------~~~~G-~~~~~l~~~i~k~l  113 (114)
T d1xfla_          69 ELKSVASDWAIQAMPTFMFLKE--GKIL------DKVVG-AKKDELQSTIAKHL  113 (114)
T ss_dssp             TSHHHHHHTTCCSSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHHHC
T ss_pred             eceeeccccceeeeEEEEEEEC--CEEE------EEEeC-cCHHHHHHHHHHhh
Confidence            9999999999999999999975  3432      33344 47899999999875

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.57  E-value=5e-15  Score=116.89  Aligned_cols=106  Identities=12%  Similarity=-0.004  Sum_probs=83.9

Q ss_pred             EcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcch
Q 048343           50 HLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSS  129 (347)
Q Consensus        50 ~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l  129 (347)
                      +|++++++.+.   +..+ ...++.|||+    ||++ |+++.|.++++|+.-...      ..+++.+.++|.++++++
T Consensus         1 ~l~~~~~e~~~---~~~~-~v~i~~F~a~----wC~~-C~~~~p~~~~la~~~~~~------~~~~v~~~~id~~~~~~l   65 (107)
T d1a8la2           1 NLMDETKQAIR---NIDQ-DVRILVFVTP----TCPY-CPLAVRMAHKFAIENTKA------GKGKILGDMVEAIEYPEW   65 (107)
T ss_dssp             CCCHHHHHHHT---TCCS-CEEEEEEECS----SCTT-HHHHHHHHHHHHHHHHHT------TCCCEEEEEEEGGGCHHH
T ss_pred             CCCHHHHHHHH---hcCC-CeEEEEEEcC----cccc-chhhChhHHhhhhhhhhc------cCCcEEEEEecccccccc
Confidence            47888888774   3222 2456679999    8999 899999999999764332      246799999999999999


Q ss_pred             HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++|+|+++||+++++.|  +..      .++.|..+.+++.++|.+.+
T Consensus        66 ~~~~~V~~vPTi~i~~~G--~~~------~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          66 ADQYNVMAVPKIVIQVNG--EDR------VEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             HHHTTCCSSCEEEEEETT--EEE------EEEESCCCHHHHHHHHHHHH
T ss_pred             ccccccccceEEEEEeCC--eEE------EEEECCCCHHHHHHHHHHhh
Confidence            999999999999999853  332      45567889999999998764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=3.6e-15  Score=120.97  Aligned_cols=108  Identities=12%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .|...++++++++++   ++.++..+++.|+|+    ||++ |+++.|.+++++++|.         +.++.|+++|.++
T Consensus        11 ~g~~~v~~~~ld~~~---~~~~~~~vll~f~a~----wCp~-C~~~~pvl~eL~~~~~---------~~~~~~~~Vd~d~   73 (119)
T d2es7a1          11 RGWQPVEASTVDDWI---KRVGDGVILLSSDPR----RTPE-VSDNPVMIAELLREFP---------QFDWQVAVADLEQ   73 (119)
T ss_dssp             TTCEECCCC-----------CCSEEEEECCCSC----C-----CCHHHHHHHHHHTCT---------TSCCEEEEECHHH
T ss_pred             cCCceecccCHHHHH---HhCCCcEEEEeecCC----CCcc-HHHHHHHHHHHHHhcC---------CCceEEEEEECCC
Confidence            478899999999998   455566777889998    8999 8999999999999862         3479999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++++.++|||+++||+++|+.  |+..      ....|.++.+++.++|++.+
T Consensus        74 ~~~l~~~~~V~~~Pt~~~~~~--G~~v------~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          74 SEAIGDRFNVRRFPATLVFTD--GKLR------GALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             HHHHHHTTTCCSSSEEEEESC--C----------CEESCCCHHHHHHHHHHHH
T ss_pred             CHHHHHhcCcCcceEEEEEEc--CeEE------EEeeCCCCHHHHHHHHHHHh
Confidence            999999999999999999985  3432      45567789999999998764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.54  E-value=8.8e-15  Score=117.10  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=83.0

Q ss_pred             CCCeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc
Q 048343           45 EAGVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF  123 (347)
Q Consensus        45 ~~~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~  123 (347)
                      .+.||+++. ++|++.+.. ....+..++|.|||+    ||++ |+.+.|.|+++++.+           +++.|+++|.
T Consensus         3 ~g~vi~i~s~e~~~~~l~~-~~~~~k~vvv~F~a~----wC~~-C~~~~p~~~~~~~~~-----------~~~~~~~vd~   65 (113)
T d1ti3a_           3 EGQVIACHTVDTWKEHFEK-GKGSQKLIVVDFTAS----WCPP-CKMIAPIFAELAKKF-----------PNVTFLKVDV   65 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHH-HTTSSSEEEEEEECS----SCHH-HHHHHHHHHHHHHHC-----------SSEEEEEEET
T ss_pred             CCcEEEEeCHHHHHHHHHH-HHcCCCEEEEEEEcC----cccc-chhhhhhhhhhhccC-----------CCceEEeeee
Confidence            346888876 455554421 111245799999999    8999 899999999999875           2478999999


Q ss_pred             cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          124 KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       124 ~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +++++++++|+|+++||+++|+.  |+..      .+..| .+.++|.+||+++.
T Consensus        66 d~~~~l~~~~~I~~~Pt~~~~k~--G~~v------~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          66 DELKAVAEEWNVEAMPTFIFLKD--GKLV------DKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TTCHHHHHHHHCSSTTEEEEEET--TEEE------EEEEC-CCTTHHHHHHHHHH
T ss_pred             eccccccccCeecccceEEEEEC--CEEE------EEEcC-CCHHHHHHHHHHHh
Confidence            99999999999999999999985  3432      33344 56789999999874

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=4.5e-15  Score=122.59  Aligned_cols=110  Identities=8%  Similarity=0.045  Sum_probs=91.3

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .|.-.++.++|++.+   .+.++-.+++.|+|+    ||++ |+++.|.++++|+++.         +..+.++++|+++
T Consensus        17 ~g~~~~~~~~~d~~~---~~~~~~vVll~f~a~----wCp~-C~~~~pvl~ela~~~~---------~~~~~~a~Vd~d~   79 (132)
T d2hfda1          17 RGWTPVSESRLDDWL---TQAPDGVVLLSSDPK----RTPE-VSDNPVMIGELLREFP---------DYTWQVAIADLEQ   79 (132)
T ss_dssp             TTCEEECHHHHHHHH---HHCSEEEEEECSCCS----CCSS-SSCCTHHHHHHHTTCT---------TSCEEEEEECHHH
T ss_pred             cCCcccccccHHHHH---HhCCCcEEEEEeeCC----CChh-HHHHHHHHHHHHHHcc---------CCcceeEEEEecC
Confidence            477889999999998   344455677789998    8999 8999999999998862         2347899999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++++.++|+|+++||+++|+.  |+.      ...+.|.++.+++.++|++....
T Consensus        80 ~~~la~~~~V~~~PT~~~~~~--G~~------v~~~~G~~~~~~l~~~i~~ll~~  126 (132)
T d2hfda1          80 SEAIGDRFGVFRFPATLVFTG--GNY------RGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_dssp             HHHHHHHHTCCSCCEEEEEET--TEE------EEEECCCSCHHHHHHHHHHHHSC
T ss_pred             CHHHHHhhccCcceeEEEEEc--CcE------eeeecCCCCHHHHHHHHHHHhCc
Confidence            999999999999999999975  333      35667789999999999887653

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.54  E-value=9.7e-15  Score=114.78  Aligned_cols=96  Identities=8%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA  131 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~  131 (347)
                      ++++|++++   +.  +..++|.|||+    ||++ |+.+.|.++++|+++           +++.|+++|+++++++++
T Consensus         7 s~~~f~~~i---~~--~~~vvv~F~a~----wC~~-C~~~~~~~~~l~~~~-----------~~~~~~~vd~d~~~~~~~   65 (103)
T d1syra_           7 SQAEFDSII---SQ--NELVIVDFFAE----WCGP-CKRIAPFYEECSKTY-----------TKMVFIKVDVDEVSEVTE   65 (103)
T ss_dssp             SHHHHHHHH---HH--CSEEEEEEECT----TCHH-HHHHHHHHHHHHHHC-----------TTSEEEEEETTTTHHHHH
T ss_pred             CHHHHHHHH---hC--CCcEEEEEeCC----cccC-cccccccchhhhhcc-----------cceEEEeeccccCcceee
Confidence            678999998   33  23689999999    8999 899999999999876           135789999999999999


Q ss_pred             HcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +++|+++||+++|..  |+..      .++.| .+.++|.+||+++
T Consensus        66 ~~~V~~~Pt~i~~k~--G~~v------~~~~G-~~~~~l~~~i~k~  102 (103)
T d1syra_          66 KENITSMPTFKVYKN--GSSV------DTLLG-ANDSALKQLIEKY  102 (103)
T ss_dssp             HTTCCSSSEEEEEET--TEEE------EEEES-CCHHHHHHHHHTT
T ss_pred             eeeeecceEEEEEEC--CEEE------EEEeC-cCHHHHHHHHHhh
Confidence            999999999999985  3432      34444 4688999999875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=1.5e-14  Score=115.94  Aligned_cols=101  Identities=9%  Similarity=0.082  Sum_probs=80.4

Q ss_pred             CeEEc-ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHL-NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L-~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .++++ +.++|++++   +.  +-.++|.|||+    ||++ |+.+.|.++++|+.+           +++.|+++|+|+
T Consensus         9 ~vi~i~s~~~~~~~~---~~--~~~vvv~F~a~----wC~~-C~~~~p~l~~l~~~~-----------~~v~~~~vd~d~   67 (113)
T d1r26a_           9 SVVDVYSVEQFRNIM---SE--DILTVAWFTAV----WCGP-CKTIERPMEKIAYEF-----------PTVKFAKVDADN   67 (113)
T ss_dssp             CCEEECCHHHHHHHH---HS--SSCEEEEEECT----TCHH-HHHTHHHHHHHHHHC-----------TTSEEEEEETTT
T ss_pred             ceEEeCCHHHHHHHH---cC--CCeEEEEEECC----CCcc-chhhceecccccccc-----------cccccccccccc
Confidence            48888 667899998   33  33699999999    8999 899999999999875           268999999999


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ++++.++|||+++||+++|+.|  +..      .+..| .+.+.+.++|++.
T Consensus        68 ~~~l~~~~~V~~~Pt~~~~~~G--~~v------~~~~G-~~~~~l~~~l~~~  110 (113)
T d1r26a_          68 NSEIVSKCRVLQLPTFIIARSG--KML------GHVIG-ANPGMLRQKLRDI  110 (113)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETT--EEE------EEEES-SCHHHHHHHHHHH
T ss_pred             chhhHHHccccCCCEEEEEECC--EEE------EEEeC-CCHHHHHHHHHHH
Confidence            9999999999999999999853  332      33344 3456666666553

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.46  E-value=4.3e-14  Score=107.35  Aligned_cols=81  Identities=10%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             EEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCC
Q 048343           71 ILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKS  150 (347)
Q Consensus        71 vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~  150 (347)
                      .|+.|||+    ||++ |+++.|.++++|+.|          ++++.|+++|+++++++.++|||+++||++++.    +
T Consensus         4 ~v~~F~a~----wC~~-C~~~~p~~~~l~~~~----------~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~----~   64 (85)
T d1nhoa_           4 NIEVFTSP----TCPY-CPMAIEVVDEAKKEF----------GDKIDVEKIDIMVDREKAIEYGLMAVPAIAING----V   64 (85)
T ss_dssp             CEEEESCS----SSCC-STTHHHHHHHHHHHH----------CSSCCEEEECTTTCGGGGGGTCSSCSSEEEETT----T
T ss_pred             EEEEEECC----CCcc-hHHHHHHHhhhcccc----------cccccccccccccchhhHHhcCceEeCEEEECC----c
Confidence            35669999    8999 899999999999987          246999999999999999999999999987732    2


Q ss_pred             CCCccccccccccccCHHHHHHHHHhhc
Q 048343          151 LKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       151 ~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                              .++.|..+.+++.+||++.+
T Consensus        65 --------~~~~G~~~~~~l~~~i~~~l   84 (85)
T d1nhoa_          65 --------VRFVGAPSREELFEAINDEM   84 (85)
T ss_dssp             --------EEEECSSCCHHHHHHHHHHC
T ss_pred             --------EEEEcCCCHHHHHHHHHHhh
Confidence                    12346678999999999875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=7.5e-14  Score=105.55  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=69.4

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAK  149 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g  149 (347)
                      ..|++|||+    ||++ |+.+.|.++++++.+          .+.+.+..+|.+++++++++|+|+++||++++..  |
T Consensus         4 v~v~~F~a~----wC~~-C~~~~p~~~~~~~~~----------~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~--g   66 (85)
T d1fo5a_           4 VKIELFTSP----MCPH-CPAAKRVVEEVANEM----------PDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD--V   66 (85)
T ss_dssp             EEEEEEECC----CSSC-CCTHHHHHHHHHHHC----------SSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTE--E
T ss_pred             eEEEEEECC----CCcC-hHhhhhhcccccccc----------ccccccccccccccccccccCCceEeeEEEEECC--c
Confidence            467889999    8999 899999999999875          3468899999999999999999999999988753  2


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhhc
Q 048343          150 SLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       150 ~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      +          +.|.++.+++.+||++++
T Consensus        67 ~----------~~G~~~~~~l~~~i~~~L   85 (85)
T d1fo5a_          67 E----------FIGAPTKEALVEAIKKRL   85 (85)
T ss_dssp             E----------CCSSSSSHHHHHHHHHHC
T ss_pred             E----------EECCCCHHHHHHHHHhcC
Confidence            1          235678899999998864

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.9e-14  Score=115.69  Aligned_cols=119  Identities=9%  Similarity=0.054  Sum_probs=85.1

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA  131 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~  131 (347)
                      +.+++++.+   ....+..++|.|||+    ||++ |+++.|.++++|+.+          ++++.|+++|+|+++++.+
T Consensus         9 s~~~~dq~i---~~~~~k~vvv~F~a~----wC~~-C~~~~p~l~~la~~~----------~~~v~~~~VDvd~~~~la~   70 (137)
T d1qgva_           9 NGWQVDQAI---LSEEDRVVVIRFGHD----WDPT-CMKMDEVLYSIAEKV----------KNFAVIYLVDITEVPDFNK   70 (137)
T ss_dssp             SHHHHHHHH---HTCSSSEEEEEEECT----TSHH-HHHHHHHHHHHHHHH----------TTTEEEEEEETTTCCTTTT
T ss_pred             CHHHHHHHH---HhCCCCEEEEEEECC----CCcc-chhcChHHHHHHHHh----------hccceEEEeeccccchhhh
Confidence            345888887   233456899999999    8999 899999999999987          2479999999999999999


Q ss_pred             HcCCCCCceEEEEcCCCCCCCC-ccccc--ccccc-ccCHHHHHHHHHhhc-----CCCCCcccCCCCch
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKD-DSVQM--EQGDF-ARMAESMADFVQSRT-----KLTVGPIHHPPLLS  192 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~-~~~~~--~~~~~-~~~a~~l~~fi~~~t-----~~~i~~i~~p~~~~  192 (347)
                      +|+|+++||+++|+.|  ++.. +....  ....+ ..+++++.+.+++..     |..  .+.-|-+|+
T Consensus        71 ~~~I~~~PT~~~f~~g--~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~~~~gk~--~~~sp~~~~  136 (137)
T d1qgva_          71 MYELYDPCTVMFFFRN--KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRG--LVVSPKDYS  136 (137)
T ss_dssp             SSCSCSSCEEEEEETT--EEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTTCS--EEECCCCCC
T ss_pred             hcCeeeEEEEEEEeCC--cEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHHHhhCCc--eEeCCcccC
Confidence            9999999999999864  3210 00000  11112 246778888776532     322  344566665

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=105.56  Aligned_cols=104  Identities=9%  Similarity=0.015  Sum_probs=76.9

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCC---CCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc-
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQ---LHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK-  124 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~---~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~-  124 (347)
                      -..+.++|++.+   ...++..++|+|||+.   .+.||++ |+.+.|.++++|+.+          ++++.|+++|++ 
T Consensus         5 ~v~~~~e~~~~l---~~~~gk~v~v~F~a~~~~~g~sWC~p-Ck~~~P~~~~l~~~~----------~~~~~~~~vdv~~   70 (119)
T d1woua_           5 SVSGFEEFHRAV---EQHNGKTIFAYFTGSKDAGGKSWCPD-CVQAEPVVREGLKHI----------SEGCVFIYCQVGE   70 (119)
T ss_dssp             EEESHHHHHHHH---HTTTTSEEEEEEECCBCTTCCBSCHH-HHHHHHHHHHHGGGC----------CTTEEEEEEECCC
T ss_pred             EeCCHHHHHHHH---HHcCCCEEEEEEEecCCCCCCCCChh-HHHHHHHHHHHHHhc----------CCceEEEEEECCC
Confidence            344667888887   3445558999999963   2349999 899999999998765          346999999994 


Q ss_pred             ------CCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          125 ------ESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       125 ------~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                            .+..+.++|+|+++||+++|..+  +..      ...+ ..+++.+.+|++
T Consensus        71 ~~~~~d~~~~l~~~~~V~~iPT~i~~~~g--~~l------~~~~-~~~~~ll~~~~~  118 (119)
T d1woua_          71 KPYWKDPNNDFRKNLKVTAVPTLLKYGTP--QKL------VESE-CLQANLVEMLFS  118 (119)
T ss_dssp             HHHHHCTTCHHHHHHCCCSSSEEEETTSS--CEE------EGGG-GGCHHHHHHHHH
T ss_pred             CcccchhhhhHHHhCCeEEEEEEEEEECC--eEE------eeee-cCCHHHHHHHhc
Confidence                  45679999999999999999864  221      2222 245677766765

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.35  E-value=8.2e-13  Score=105.60  Aligned_cols=102  Identities=12%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             CCeEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           46 AGVIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        46 ~~VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .++-..+.+.+++.+   ++  +..++|+|+++    ||++ |+.+.|.++++++.+          +.++.|..+|..+
T Consensus         9 ~~~~~~t~~~~~~~i---~~--~~~~~v~f~~~----~C~~-C~~~~p~l~~~~~~~----------~~~v~~v~~~~~~   68 (115)
T d1zmaa1           9 KDLEVTTVVRAQEAL---DK--KETATFFIGRK----TCPY-CRKFAGTLSGVVAET----------KAHIYFINSEEPS   68 (115)
T ss_dssp             TTSEECCHHHHHHHH---HT--TCCEEEEEECT----TCHH-HHHHHHHHHHHHHHH----------CCCCEEEETTCGG
T ss_pred             eeeeeCCHHHHHHHH---hc--CCCEEEEEcCC----CCcc-HHHHHHHHHHHHHHh----------hhhhhhheeeccc
Confidence            357778889999987   33  23589999999    8999 899999999999876          2457777666544


Q ss_pred             C----cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHH
Q 048343          126 S----QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       126 ~----~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +    +++.++++|+++||+++|++|  +..      .+++|..+.++|.+||+
T Consensus        69 ~~~~~~~~~~~~~V~~~PTli~~~~g--k~~------~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          69 QLNDLQAFRSRYGIPTVPGFVHITDG--QIN------VRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             GHHHHHHHHHHHTCCSSCEEEEEETT--EEE------EECCTTCCHHHHHHHHT
T ss_pred             ccccccccccccccccccEEEEEECC--EEE------EEEcCCCCHHHHHHHHc
Confidence            3    478999999999999999864  332      56678889999999984

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.2e-11  Score=98.47  Aligned_cols=103  Identities=11%  Similarity=0.006  Sum_probs=73.6

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC----cch
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES----QSS  129 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~----~~l  129 (347)
                      +++++.+   ...++..++|.|||+    ||++ |+.++|++...++....        .+++.+..+|++.+    +++
T Consensus        11 ~~~~~~l---~~~~gK~vlv~F~a~----wC~~-C~~~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~~~~~~~l   74 (117)
T d2fwha1          11 DELNQAL---VEAKGKPVMLDLYAD----WCVA-CKEFEKYTFSDPQVQKA--------LADTVLLQANVTANDAQDVAL   74 (117)
T ss_dssp             HHHHHHH---HHHTTSCEEEEEECT----TCHH-HHHHHHHTTTSHHHHHH--------TTTSEEEEEECTTCCHHHHHH
T ss_pred             HHHHHHH---HHcCCCeEEEEEecc----cCCc-ccccchhHHhHHHHHHh--------ccceEEEecccccchhHHHHH
Confidence            4566655   222345799999999    8999 89999998554443221        13567788888653    478


Q ss_pred             HhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          130 FALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       130 f~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .++++++++||+++|.++ |+..    ...+..|..+++++.++|+++
T Consensus        75 ~~~~~v~~~Pt~~~~~~~-G~~~----~~~~~~G~~~~~~~~~~l~~~  117 (117)
T d2fwha1          75 LKHLNVLGLPTILFFDGQ-GQEH----PQARVTGFMDAETFSAHLRDR  117 (117)
T ss_dssp             HHHTTCCSSSEEEEECTT-SCBC----GGGCBCSCCCHHHHHHHHHHC
T ss_pred             HhhhehhhceEEEEEeCC-CcEE----ecccccccCCHHHHHHHHhcC
Confidence            999999999999999764 4432    112335668999999999875

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=1.1e-11  Score=96.07  Aligned_cols=78  Identities=9%  Similarity=-0.027  Sum_probs=63.9

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAK  149 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g  149 (347)
                      ..++.|+|+    ||++ |+++.|.++++|..+           .++.|.++|.+++++++++|+|+++||+++  .  |
T Consensus        17 ~~i~~F~s~----~C~~-C~~~~p~~~~~a~~~-----------~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--n--g   76 (96)
T d1hyua4          17 FEFETYYSL----SCHN-CPDVVQALNLMAVLN-----------PRIKHTAIDGGTFQNEITERNVMGVPAVFV--N--G   76 (96)
T ss_dssp             EEEEEEECT----TCSS-HHHHHHHHHHHHHHC-----------TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--T--T
T ss_pred             eEEEEEECC----CCcc-hHHHHHHHHHHHHhC-----------CceEEEEEecccchHHHhhcccccccEEEE--C--C
Confidence            456679998    8999 899999999999753           369999999999999999999999999865  2  3


Q ss_pred             CCCCccccccccccccCHHHHHHHHH
Q 048343          150 SLKDDSVQMEQGDFARMAESMADFVQ  175 (347)
Q Consensus       150 ~~~~~~~~~~~~~~~~~a~~l~~fi~  175 (347)
                      +.        .+.|.++.++|.++|.
T Consensus        77 ~~--------~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          77 KE--------FGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             EE--------EEESCCCHHHHHHHHC
T ss_pred             EE--------EEecCCCHHHHHHHHh
Confidence            32        2346678999988874

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=1.3e-10  Score=103.09  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=82.3

Q ss_pred             CeEEcCh-hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC
Q 048343           47 GVIHLND-QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE  125 (347)
Q Consensus        47 ~VI~L~~-~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~  125 (347)
                      .|+++++ ++|.+.+.  +..++-.|||.|+++    ||++ |+.+.|.++.+|..|           ..+.|+++|.++
T Consensus       100 ~v~~i~~~~~f~~~v~--~~~~~~~Vvvhfy~~----~~~~-C~~~~~~l~~lA~~~-----------~~vkF~ki~~~~  161 (217)
T d2trcp_         100 FVYELETGEQFLETIE--KEQKVTTIVVNIYED----GVRG-CDALNSSLECLAAEY-----------PMVKFCKIRASN  161 (217)
T ss_dssp             SEEECCSHHHHHHHHH--HSCTTCEEEEEEECT----TSTT-HHHHHHHHHHHHTTC-----------TTSEEEEEEHHH
T ss_pred             eEEEcCCHHHHHHHHH--hcCCCCeEEEEEEcC----CCCC-hhhhhhhHHHHhhhc-----------ccceEEEEcccc
Confidence            4999975 78988883  444566789999999    8999 899999999999765           258999999998


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccc-cccccCHHHHHHHHHhh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQ-GDFARMAESMADFVQSR  177 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~-~~~~~~a~~l~~fi~~~  177 (347)
                      .+ +.++|+++++||+++|+.|  ......-.+.. .....++++|..+|.++
T Consensus       162 ~~-~~~~~~i~~lPtl~~yk~G--~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         162 TG-AGDRFSSDVLPTLLVYKGG--ELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             HT-CSTTSCGGGCSEEEEEETT--EEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             ch-hHHhCCCCCCCeEEEEECC--EEEEEEECccccccccCCHHHHHHHHHHc
Confidence            76 4579999999999999864  43200001111 11136789998888775

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=6.2e-09  Score=80.86  Aligned_cols=83  Identities=12%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             CCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcC
Q 048343           67 RPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGP  146 (347)
Q Consensus        67 R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp  146 (347)
                      +...+|++||++    ||++ |++++|.+++++.+|            ...+.++|.++++++.++|+++ +|++++  .
T Consensus        14 ~~~p~i~lft~~----~C~~-C~~a~~~L~~~~~~~------------~~~~v~vd~~~~~~l~~~y~~~-VPvl~i--d   73 (100)
T d1wjka_          14 RALPVLTLFTKA----PCPL-CDEAKEVLQPYKDRF------------ILQEVDITLPENSTWYERYKFD-IPVFHL--N   73 (100)
T ss_dssp             CCCCEEEEEECS----SCHH-HHHHHHHTSTTSSSS------------EEEEEETTSSTTHHHHHHSSSS-CSEEEE--S
T ss_pred             CCCCEEEEEECC----CCCC-hHHHHHHHHHhhhhc------------ceEEEecccccCHHHHHHhccc-CCceee--c
Confidence            466789999999    8999 799999988876544            3567889999999999999997 998765  2


Q ss_pred             CCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          147 DAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                        |+..        ..+..+.++|.++|++..|
T Consensus        74 --g~~~--------~~g~~d~~~L~~~L~~l~~   96 (100)
T d1wjka_          74 --GQFL--------MMHRVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             --SSEE--------EESSCCHHHHHHHHHSSSC
T ss_pred             --CceE--------EeCCCCHHHHHHHHHHHhc
Confidence              2321        1245788999999987654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.44  E-value=3.2e-07  Score=74.43  Aligned_cols=99  Identities=10%  Similarity=-0.025  Sum_probs=65.5

Q ss_pred             CCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCC-------C--CC-C---------CCceEEEEEEccCC
Q 048343           66 PRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVD-------N--PS-S---------RGKLFFCYLEFKES  126 (347)
Q Consensus        66 ~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~-------~--~~-~---------~~~v~F~~vD~~~~  126 (347)
                      .++..+++.|||+    ||++ |++-.|+++++.+++......       +  .+ +         +....-..+-.|++
T Consensus        21 ~~gk~vvl~F~a~----wC~~-C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   95 (143)
T d2fy6a1          21 KKDKPTLIKFWAS----WCPL-CLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNG   95 (143)
T ss_dssp             CTTSCEEEEEECT----TCHH-HHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTT
T ss_pred             hCCCEEEEEEECC----CCcc-ccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccc
Confidence            3456899999999    8999 799999999998887532100       0  00 0         00000011112445


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      .++.+.|+++++|+.+++.+. |+..      ....|..+.+++.++|++
T Consensus        96 ~~~~~~~~v~~~P~~~liD~~-G~i~------~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1          96 GTIAQSLNISVYPSWALIGKD-GDVQ------RIVKGSINEAQALALIRD  138 (143)
T ss_dssp             CHHHHHTTCCSSSEEEEECTT-SCEE------EEEESCCCHHHHHHHHHC
T ss_pred             hHHHHHcCCCccCEEEEECCC-CEEE------EEEECCCCHHHHHHHHHH
Confidence            678999999999999999764 4432      334456778889888875

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.8e-07  Score=77.32  Aligned_cols=103  Identities=11%  Similarity=0.072  Sum_probs=71.8

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHH---HHHHHHhhhcCCCCCCCCCceEEEEEEccCC--cc
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEF---SLVASSFIANNVDNPSSRGKLFFCYLEFKES--QS  128 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pef---e~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~--~~  128 (347)
                      .+|++-.. ....++..++|+|+++    ||+. |+.++.+.   +.|.+-. +         ++..++++|.++.  ++
T Consensus        29 ~~~~~A~~-~Ak~~~K~llV~~~~~----~C~~-C~~m~~~v~~d~~V~~~l-~---------~~fV~~~v~~~~~e~~~   92 (147)
T d2dlxa1          29 GSFETAKE-CGQMQNKWLMINIQNV----QDFA-CQCLNRDVWSNEAVKNII-R---------EHFIFWQVYHDSEEGQR   92 (147)
T ss_dssp             SCHHHHHH-HHHHHTCEEEEEEECS----CTTT-HHHHHHHTTTCHHHHHHH-H---------HTEEEEEEESSSHHHHH
T ss_pred             CCHHHHHH-HHHHcCCcEEEEEecC----CCCc-hHHHHHhccCCHHHHHHH-h---------hheeEeeecccchhhhh
Confidence            34555542 1222356899999999    8999 79998755   5555443 2         2578899999864  68


Q ss_pred             hHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          129 SFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       129 lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +.++|++.++|+++++.|..|+..      ... +..+++++.+.|++.++
T Consensus        93 ~~~~y~v~~~Pti~~idp~~ge~v------~~~-~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1          93 YIQFYKLGDFPYVSILDPRTGQKL------VEW-HQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             HHHHHTCCSSSEEEEECTTTCCCC------EEE-SSCCHHHHHHHHHHHHH
T ss_pred             hhhheecCceeEEEEEeCCCCeEe------ccc-CCCCHHHHHHHHHHHHh
Confidence            999999999999999988544432      222 34567777777766554

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.35  E-value=6.8e-07  Score=73.20  Aligned_cols=70  Identities=14%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc--------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ--------------------  127 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~--------------------  127 (347)
                      ...++|.|||+    ||++ |++..|.++++.++|..        +.++.+..+..|+++                    
T Consensus        28 GK~vll~FwAt----WC~p-C~~~~p~L~~l~~~~~~--------~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~   94 (144)
T d1i5ga_          28 GKTVFFYFSAS----WCPP-SRAFTPQLIDFYKAHAE--------KKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDR   94 (144)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTT--------TTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCH
T ss_pred             CCEEEEEEEec----CCch-HhhhhHhHHHHHHHHHh--------ccCcEEEEEeccccHHHHHHHHHhCCCCceeeECh
Confidence            34789999999    8999 89999999999988843        234555555554321                    


Q ss_pred             ----chHhHcCCCCCceEEEEcCCCCC
Q 048343          128 ----SSFALFAVNSLPHIRLVGPDAKS  150 (347)
Q Consensus       128 ----~lf~~~~I~svP~l~~fpp~~g~  150 (347)
                          .+.++|+++++||.+++.+..|+
T Consensus        95 ~~~~~l~~~y~v~~iPt~~lid~~~G~  121 (144)
T d1i5ga_          95 KGMEFLTTGFDVKSIPTLVGVEADSGN  121 (144)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTTCC
T ss_pred             HHHHHHHHHCCCCCcCEEEEEeCCCCE
Confidence                35778999999999999764344

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.35  E-value=1.2e-06  Score=70.49  Aligned_cols=88  Identities=13%  Similarity=0.086  Sum_probs=61.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc----------------------cC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF----------------------KE  125 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~----------------------~~  125 (347)
                      ...++|.|+|+    ||++ |+...|.++++++++.           ++.+..++.                      |.
T Consensus        24 Gk~vll~F~a~----wC~~-C~~~~p~l~~~~~~~~-----------~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~   87 (134)
T d1lu4a_          24 GKPAVLWFWTP----WCPF-CNAEAPSLSQVAAANP-----------AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA   87 (134)
T ss_dssp             TSCEEEEEECT----TCHH-HHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECT
T ss_pred             CCEEEEEEeec----ccCC-ceecchhHHHHhhhhc-----------cccccccccccchhhhhhhhhhhccccceeeCc
Confidence            34789999998    8999 7999999999887541           122333332                      23


Q ss_pred             CcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          126 SQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       126 ~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      ..++++.||++++|+.+++.++ |+..   . .....+..+.+++.+-|++
T Consensus        88 ~~~~~~~~~v~~~P~~~lid~~-G~i~---~-v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          88 DGVIWARYNVPWQPAFVFYRAD-GTST---F-VNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             TSHHHHHTTCCSSSEEEEECTT-SCEE---E-ECCSSSCCCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCcCCEEEEEeCC-CeEE---E-EeccCCCCCHHHHHHHHHc
Confidence            4578999999999999999875 4432   0 1122345678888887764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.34  E-value=1.1e-06  Score=70.28  Aligned_cols=97  Identities=16%  Similarity=0.066  Sum_probs=62.5

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcC------CCCCC------CCCceEEEEEEccCCcchHhHcCCC
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANN------VDNPS------SRGKLFFCYLEFKESQSSFALFAVN  136 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~------p~~~~------~~~~v~F~~vD~~~~~~lf~~~~I~  136 (347)
                      ..++|.|||+    ||++ |++..|+++++++++....      .+..+      ...++....+=.|.+.++.++||++
T Consensus        26 k~vll~fwa~----wC~~-C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~  100 (134)
T d1zzoa1          26 KPAVLWFWAP----WCPT-CQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (134)
T ss_dssp             SCEEEEEECT----TCHH-HHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             CEEEEEeccc----ccCc-ccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCC
Confidence            3689999999    8999 7999999999998763110      00000      0001100011123445889999999


Q ss_pred             CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhc
Q 048343          137 SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRT  178 (347)
Q Consensus       137 svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t  178 (347)
                      ++|+.+++.++ |...       ...+..+.+++.+.|++.|
T Consensus       101 ~~P~~~iiD~~-G~i~-------~~~g~~~~~~l~~~i~~Lt  134 (134)
T d1zzoa1         101 QQPAYAFVDPH-GNVD-------VVRGRMSQDELTRRVTALT  134 (134)
T ss_dssp             SSSEEEEECTT-CCEE-------EEESCCCHHHHHHHHHHHC
T ss_pred             ccCeEEEECCC-CeEE-------EEECCCCHHHHHHHHHhhC
Confidence            99999999764 4432       1234567888988887653

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.28  E-value=6.8e-07  Score=72.71  Aligned_cols=98  Identities=8%  Similarity=-0.039  Sum_probs=62.0

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcC----CCCCC-------CCCceEEEEEEccCCcchHhHcCCC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANN----VDNPS-------SRGKLFFCYLEFKESQSSFALFAVN  136 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~----p~~~~-------~~~~v~F~~vD~~~~~~lf~~~~I~  136 (347)
                      ...+||.|||+    ||++ |+...|+.+++.+.+.-.-    .+...       ...+..+..+-.|.+.++.+.|+++
T Consensus        31 gK~vll~fwa~----wC~~-C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (144)
T d1knga_          31 GKVSLVNVWAS----WCVP-CHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY  105 (144)
T ss_dssp             TSCEEEEEECT----TCHH-HHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC
T ss_pred             CCEEEEEeecc----cccc-ccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcc
Confidence            34799999999    8999 7999999988765431100    00000       0001122223334456799999999


Q ss_pred             CCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          137 SLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       137 svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      ++|+.+++.+. |+..      .+..|..+.+++.+.|.+.
T Consensus       106 ~~P~~~liD~~-G~i~------~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         106 GVPETFVVGRE-GTIV------YKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             SSCEEEEECTT-SBEE------EEEESCCCHHHHHHTHHHH
T ss_pred             ccceEEEEcCC-CeEE------EEEeCCCCHHHHHHHHHHH
Confidence            99999999864 5543      3334566778877776654

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.3e-06  Score=70.34  Aligned_cols=96  Identities=8%  Similarity=-0.053  Sum_probs=58.8

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhc---CCCCCC-------CCCceEEEEEEccCCcchHhHcCCCCCc
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIAN---NVDNPS-------SRGKLFFCYLEFKESQSSFALFAVNSLP  139 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~---~p~~~~-------~~~~v~F~~vD~~~~~~lf~~~~I~svP  139 (347)
                      .++|.|||+    ||++ |++-.|.++++++....-   ..+...       ...+..+..+-.|.+.++.+.|+++++|
T Consensus        22 ~vvl~Fwat----WC~p-C~~e~p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P   96 (136)
T d1z5ye1          22 PVLLNVWAT----WCPT-SRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP   96 (136)
T ss_dssp             CEEEEEECT----TCHH-HHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBS
T ss_pred             EEEEEEEcC----cCCC-cCccccchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCcc
Confidence            699999999    9999 799999999886532100   000000       0001111122234556789999999999


Q ss_pred             eEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          140 HIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       140 ~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      +.+++.++ |+..      ....|..+.+++.+.|++.
T Consensus        97 ~~~liD~~-G~i~------~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          97 ETFLIDGN-GIIR------YRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             EEEEECTT-SCEE------EEEESCCCHHHHHHHTHHH
T ss_pred             eEEEEcCC-CEEE------EEEEcCCCHHHHHHHHHHH
Confidence            99999864 5543      2334445666666655543

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=3.1e-06  Score=68.64  Aligned_cols=87  Identities=11%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc------------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF------------------------  123 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~------------------------  123 (347)
                      +..+++.|||+    ||++ |++..|.++++.+.|..          ++.+.-+++                        
T Consensus        29 ~k~vvl~f~a~----~C~~-C~~~~p~l~~l~~~~~~----------~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p   93 (143)
T d2b5xa1          29 EKPTLIHFWSI----SCHL-CKEAMPQVNEFRDKYQD----------QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (143)
T ss_dssp             TSCEEEEEECT----TCHH-HHHHHHHHHHHHHHHTT----------TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             CCEEEEEEEcC----CCcc-hhhhhhhhhhhhhhhhc----------cccceeEEeeccccccchhhhhhHHHhhccCcc
Confidence            34688999998    8999 79999999999988732          222222222                        


Q ss_pred             ---cCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          124 ---KESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       124 ---~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                         |...++.+.|+++++|+.+++.+. |...      ..+.|..+.+++.+-|++
T Consensus        94 ~~~D~~~~~~~~~~v~~~P~~~~id~~-G~i~------~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          94 IFVDSDHALTDAFENEYVPAYYVFDKT-GQLR------HFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             EEECSSCHHHHHTCCCCSSEEEEECTT-CBEE------EEEESCSTTHHHHHHHHH
T ss_pred             ccccCccchHHHcCCCcCCEEEEECCC-CEEE------EEEECCCCHHHHHHHHHh
Confidence               233457888999999999999764 4432      233445556667666554

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.20  E-value=2e-06  Score=69.96  Aligned_cols=71  Identities=11%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCC---------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKES---------------------  126 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~---------------------  126 (347)
                      ...++|.|||+    ||++ |++..|.++++.++|.++        .++.+..+..|+.                     
T Consensus        28 GK~vvl~Fwat----wC~~-C~~~~p~l~~l~~~~~~~--------~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T d1o73a_          28 GKTVFLYFSAS----WCPP-CRGFTPVLAEFYEKHHVA--------KNFEVVLISWDENESDFHDYYGKMPWLALPFDQR   94 (144)
T ss_dssp             TCEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCH
T ss_pred             CCEEEEEeChh----hCcc-chhhhHHHHHHHHHHhhc--------cCeEEEEEecchhHHHHHHHHHhccccceeeecc
Confidence            34799999999    8999 899999999999888432        2344444433321                     


Q ss_pred             ---cchHhHcCCCCCceEEEEcCCCCCC
Q 048343          127 ---QSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       127 ---~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                         .++.++|+++++|+.+++.+..|..
T Consensus        95 ~~~~~l~~~y~v~~~Pt~~lID~~~G~I  122 (144)
T d1o73a_          95 STVSELGKTFGVESIPTLITINADTGAI  122 (144)
T ss_dssp             HHHHHHHHHHTCCSSSEEEEEETTTCCE
T ss_pred             chHHHHHHHcCCCcCCEEEEEECCCCEE
Confidence               1477899999999999998753443

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.5e-06  Score=67.62  Aligned_cols=69  Identities=12%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhH-cCCCCCceEEEEcC
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFAL-FAVNSLPHIRLVGP  146 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~-~~I~svP~l~~fpp  146 (347)
                      +..++|.|+|+    ||++ |+.++|++.+..+... .       ..++..+++|.++.++..+. .....+|+++++.|
T Consensus        25 ~Kpvlv~F~a~----wC~~-C~~~~~~~~~~~~~~~-~-------~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~   91 (135)
T d1sena_          25 GLPLMVIIHKS----WCGA-CKALKPKFAESTEISE-L-------SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDP   91 (135)
T ss_dssp             TCCEEEEEECT----TCHH-HHHHHHHHHTCHHHHH-H-------HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECT
T ss_pred             CCcEEEEEEec----CCCC-ceecchhhhhhHHHHH-h-------cCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECC
Confidence            45799999999    8999 8999999988875432 2       24688999999987765543 45556899999987


Q ss_pred             CCCC
Q 048343          147 DAKS  150 (347)
Q Consensus       147 ~~g~  150 (347)
                      . |.
T Consensus        92 ~-G~   94 (135)
T d1sena_          92 S-GK   94 (135)
T ss_dssp             T-SC
T ss_pred             C-Ce
Confidence            5 44

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=1e-05  Score=64.72  Aligned_cols=87  Identities=11%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC----------------------C
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE----------------------S  126 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~----------------------~  126 (347)
                      ..++|.|+|+    ||++ |++..|++.++.+.+.+.         ++.|..++.++                      .
T Consensus        26 k~~li~f~~~----~C~~-C~~~~~~l~~~~~~~~~~---------~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~   91 (137)
T d1st9a_          26 KGVFLNFWGT----WCEP-CKKEFPYMANQYKHFKSQ---------GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTD   91 (137)
T ss_dssp             SEEEEEEECT----TCHH-HHHHHHHHHHHHHHHGGG---------TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETT
T ss_pred             CEEEEEEeec----cccc-eeeccccccccccccccc---------ccccccccccchhhhHHHHHHHcCCCcccccccc
Confidence            3689999998    8999 899999999999988532         34444444322                      3


Q ss_pred             cchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          127 QSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       127 ~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      .++.+.|++.++|+++++.++ |...      ..+.|..+.+++.+.++.
T Consensus        92 ~~~~~~~~v~~~P~~~liD~~-G~i~------~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_          92 RQVLDAYDVSPLPTTFLINPE-GKVV------KVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SHHHHHTTCCSSCEEEEECTT-SEEE------EEEESCCCHHHHHHHHHH
T ss_pred             chhhhhhhccccceEEEECCC-CEEE------EEEECCCCHHHHHHHHHh
Confidence            367899999999999999874 4432      334455567777777654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.03  E-value=7.8e-06  Score=65.92  Aligned_cols=69  Identities=16%  Similarity=0.210  Sum_probs=52.2

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC-----------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE-----------------------  125 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~-----------------------  125 (347)
                      ..++|.|||+    ||++ |+...|.++++++.+..+        ..+.+..++.++                       
T Consensus        27 K~vll~Fwa~----wC~~-C~~~~~~l~~l~~~~~~~--------~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d   93 (144)
T d1o8xa_          27 KLVFFYFSAS----WCPP-ARGFTPQLIEFYDKFHES--------KNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSE   93 (144)
T ss_dssp             CEEEEEEECT----TCHH-HHHHHHHHHHHHHHHTTT--------TTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHH
T ss_pred             CEEEEEeccc----cccc-cccccchhHHhhhhcccc--------cccccccccccccHHHHHHHHhhccccceeeeccc
Confidence            4799999999    8999 799999999999988432        234444444442                       


Q ss_pred             -CcchHhHcCCCCCceEEEEcCCCCC
Q 048343          126 -SQSSFALFAVNSLPHIRLVGPDAKS  150 (347)
Q Consensus       126 -~~~lf~~~~I~svP~l~~fpp~~g~  150 (347)
                       +.++.+.|+++++|+.+++.+..|.
T Consensus        94 ~~~~l~~~y~v~~~Pt~~liD~~~G~  119 (144)
T d1o8xa_          94 AVQKLSKHFNVESIPTLIGVDADSGD  119 (144)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEETTTCC
T ss_pred             chhhHHHHcCCCcCCEEEEEeCCCCE
Confidence             1257889999999999999764343

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.92  E-value=3.6e-05  Score=61.52  Aligned_cols=109  Identities=13%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             eEEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc
Q 048343           48 VIHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ  127 (347)
Q Consensus        48 VI~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~  127 (347)
                      |.++|.+|+.++.   +.+.  ..+++|+....     . .+++...++++|+.|          .+++.|+.+|.++..
T Consensus         8 v~e~~~~n~~~~~---~~~~--pl~~lf~~~~~-----~-~~~~~~~~~~vA~~~----------~~ki~Fv~vd~~~~~   66 (133)
T d2djka1           8 IGEIGPETYSDYM---SAGI--PLAYIFAETAE-----E-RKELSDKLKPIAEAQ----------RGVINFGTIDAKAFG   66 (133)
T ss_dssp             SEECCHHHHHHHH---HTTS--CEEEEECSCSS-----S-HHHHHHHHHHHHHSS----------TTTSEEEEECTTTTG
T ss_pred             eeccChhhHHHHh---cCCC--CEEEEEeCCch-----H-HHHHHHHHHHHHHHh----------cCceEEEEEeHHHhH
Confidence            7899999999997   4433  57778887642     3 488999999999987          357999999999988


Q ss_pred             chHhHcCC--CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCCCC
Q 048343          128 SSFALFAV--NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       128 ~lf~~~~I--~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      ...+.||+  ...|.+.++.... ...   .. ...+...+.+.+.+|+++...-++
T Consensus        67 ~~l~~~gl~~~~~P~~~i~~~~~-~~~---~~-~~~~~~i~~~~i~~Fi~d~~~Gkl  118 (133)
T d2djka1          67 AHAGNLNLKTDKFPAFAIQEVAK-NQK---FP-FDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             GGTTTTTCCSSSSSEEEEECTTT-CCB---CC-CCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCCcccCCcEEEEEcCC-Cce---ec-CCccccCCHHHHHHHHHHHHcCCC
Confidence            89999999  5589999987532 111   11 111335689999999998766554

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=1.3e-05  Score=68.31  Aligned_cols=68  Identities=15%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------  122 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------  122 (347)
                      +..+||.|||+    ||++ |+...|+++++++.|..          ++.|..++                         
T Consensus        32 Gk~vvl~Fwat----wCp~-C~~~~p~l~~l~~~y~~----------~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~   96 (187)
T d2cvba1          32 EPLLAVVFMCN----HCPY-VKGSIGELVALAERYRG----------KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIF   96 (187)
T ss_dssp             SSEEEEEEECS----SCHH-HHTTHHHHHHHHHHTTT----------TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCC
T ss_pred             CCeEEEEEeCC----CCcc-chhhhhhhhhhhhhccc----------cceeeeeeccccccccccchHHHHHHHHHhCCc
Confidence            34789999999    8999 79999999999999832          23333332                         


Q ss_pred             ----ccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343          123 ----FKESQSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus       123 ----~~~~~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                          .|+++++.++|+++++|+.+++.++ |..
T Consensus        97 ~p~l~D~~~~~~~~~~v~~~P~~~liD~~-G~i  128 (187)
T d2cvba1          97 FPYLLDETQEVAKAYRALRTPEVFLFDER-RLL  128 (187)
T ss_dssp             SCEEECSSSHHHHHTTCCEESEEEEECTT-CBE
T ss_pred             ceeeechhhhhcccccccceeeEEEEcCC-CeE
Confidence                2345689999999999999999875 543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.81  E-value=9.8e-06  Score=67.46  Aligned_cols=78  Identities=9%  Similarity=0.014  Sum_probs=59.1

Q ss_pred             EEcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcc
Q 048343           49 IHLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQS  128 (347)
Q Consensus        49 I~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~  128 (347)
                      +.++++.-+++-   +-.++ ..++.|+|+    ||++ |++..|.++++++.+           +++-|..++.+++++
T Consensus        39 ~~l~~~~~~~l~---~~~~~-~~~l~~~~t----WC~~-C~~~~P~l~~l~~~~-----------~~~~~~~i~~d~~~~   98 (166)
T d1z6na1          39 NGLPSALTERLQ---RIERR-YRLLVAGEM----WCPD-CQINLAALDFAQRLQ-----------PNIELAIISKGRAED   98 (166)
T ss_dssp             HCCCHHHHHHHH---TCCSC-EEEEEECCT----TCHH-HHHHHHHHHHHHHHC-----------TTEEEEEECHHHHHH
T ss_pred             ccccHHHHHHHH---HhcCC-eEEEEEEeC----cCcc-HHHHHHHHHHHHHHC-----------CCCcEEEEECccCHH
Confidence            567887777764   32234 567779999    9999 899999999998875           245667788888888


Q ss_pred             hHhHc---CCCCCceEEEEcC
Q 048343          129 SFALF---AVNSLPHIRLVGP  146 (347)
Q Consensus       129 lf~~~---~I~svP~l~~fpp  146 (347)
                      ..+++   +..++|.++....
T Consensus        99 ~~~~~~~~~~~~~p~~~~~d~  119 (166)
T d1z6na1          99 DLRQRLALERIAIPLVLVLDE  119 (166)
T ss_dssp             HTTTTTTCSSCCSSEEEEECT
T ss_pred             HHHHHHHhccccccceeecCc
Confidence            77777   5567888887653

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=4.5e-05  Score=60.65  Aligned_cols=112  Identities=12%  Similarity=0.175  Sum_probs=80.1

Q ss_pred             EcChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcch
Q 048343           50 HLNDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSS  129 (347)
Q Consensus        50 ~L~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~l  129 (347)
                      ++|.+||.++.   +.++  +.+++|+.+.     .. -.++.+.++++|+.+          ++++.|+.+|.++....
T Consensus         4 ei~~~~~~~y~---~~~~--Pl~~~f~~~~-----~~-~~~~~~~~~~vAk~f----------kgki~Fv~~D~~~~~~~   62 (125)
T d2b5ea3           4 EIDGSVFAQYV---ESGL--PLGYLFYNDE-----EE-LEEYKPLFTELAKKN----------RGLMNFVSIDARKFGRH   62 (125)
T ss_dssp             BCCHHHHHHHH---HTTS--CEEEEEESSH-----HH-HHHHHHHHHHHHHHT----------TTTCEEEEEEHHHHTTH
T ss_pred             ccCHHHHHHHH---hcCC--CEEEEEeCCh-----HH-HHHHHHHHHHHHHHh----------cCeeEEEEEchHHhHHH
Confidence            68999999998   3333  5777788763     23 368999999999988          35799999999999999


Q ss_pred             HhHcCCCC-CceEEEEcCCCCCC---CCccccc---cccccccCHHHHHHHHHhhcCCCC
Q 048343          130 FALFAVNS-LPHIRLVGPDAKSL---KDDSVQM---EQGDFARMAESMADFVQSRTKLTV  182 (347)
Q Consensus       130 f~~~~I~s-vP~l~~fpp~~g~~---~~~~~~~---~~~~~~~~a~~l~~fi~~~t~~~i  182 (347)
                      .+.||+.. .|.+.+.....+..   ......+   .......+.+.|.+|+++...-++
T Consensus        63 l~~fgl~e~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKl  122 (125)
T d2b5ea3          63 AGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDA  122 (125)
T ss_dssp             HHHTTCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCCccCCcEEEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCc
Confidence            99999966 89999887542110   0000000   011235789999999999876555

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.25  E-value=0.00038  Score=57.71  Aligned_cols=93  Identities=9%  Similarity=0.002  Sum_probs=57.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc---chHhH------------
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---SSFAL------------  132 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---~lf~~------------  132 (347)
                      ...+|+.||++    ||++ |+...++++++.+.+.+.       +..+.++.+|.++.+   +..++            
T Consensus        56 GK~vll~F~a~----wC~~-C~~~~~~l~~~~~~~~~~-------~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~  123 (176)
T d1jfua_          56 GKTLLVNLWAT----WCVP-CRKEMPALDELQGKLSGP-------NFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQ  123 (176)
T ss_dssp             TSEEEEEEECT----TCHH-HHHHHHHHHHHHHHHCBT-------TEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECT
T ss_pred             CCEEEEEeccC----cccc-hHHHHHhhhhcccccccc-------ccccccccccccchhhhhhhHhhhCCcceeeeecc
Confidence            44799999998    8999 799999999988877432       224555555543221   22222            


Q ss_pred             -----------cCCCCCceEEEEcCCCCCCCCcccccccccc--ccCHHHHHHHHHhhcC
Q 048343          133 -----------FAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF--ARMAESMADFVQSRTK  179 (347)
Q Consensus       133 -----------~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~--~~~a~~l~~fi~~~t~  179 (347)
                                 +++.++|+.++..++ |...      .++.|  ..+.+++.+.|++.+|
T Consensus       124 ~~~~~~~~~~~~~v~~~P~~~lID~~-G~I~------~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         124 KAKVFQDLKAIGRALGMPTSVLVDPQ-GCEI------ATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             TCHHHHHHHTTTCCSSSSEEEEECTT-SBEE------EEEESCCCTTSHHHHHHHHHHHC
T ss_pred             hhHHHHHHhhhccCCCCCeEEEEcCC-CEEE------EEEECCCCCChHHHHHHHHHhcC
Confidence                       345667887777653 4332      11222  2345778888887665

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=96.96  E-value=0.00097  Score=48.03  Aligned_cols=72  Identities=10%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCC
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSL  151 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~  151 (347)
                      +.+||.+    +|++ |.+.+..+.   +    .        ..+-|-.+|+++++++.++|+.+ ||.+. .. + +.+
T Consensus         2 ltLyt~~----~C~L-Ce~A~~~l~---~----~--------~~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~~-~-~~~   57 (75)
T d1ttza_           2 LTLYQRD----DCHL-CDQAVEALA---Q----A--------RAGAFFSVFIDDDAALESAYGLR-VPVLR-DP-M-GRE   57 (75)
T ss_dssp             EEEEECS----SCHH-HHHHHHHHH---H----T--------TCCCEEEEECTTCHHHHHHHTTT-CSEEE-CT-T-CCE
T ss_pred             EEEECCC----CccH-HHHHHHHHH---h----c--------cCCcEEEEEccCCHHHHHHhCCe-eeEEE-EC-C-eeE
Confidence            4567777    8999 776543322   1    1        13568899999999999999976 99764 32 2 221


Q ss_pred             CCccccccccccccCHHHHHHHHHh
Q 048343          152 KDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                               ...+.+.+++.+|++.
T Consensus        58 ---------l~w~fd~~~l~~~L~~   73 (75)
T d1ttza_          58 ---------LDWPFDAPRLRAWLDA   73 (75)
T ss_dssp             ---------EESCCCHHHHHHHHHT
T ss_pred             ---------EcCccCHHHHHHHHhc
Confidence                     1235689999999864

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0012  Score=53.80  Aligned_cols=93  Identities=9%  Similarity=0.060  Sum_probs=56.0

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh----hcCCCCC-C------------------------CCCceEE
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI----ANNVDNP-S------------------------SRGKLFF  118 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~----~~~p~~~-~------------------------~~~~v~F  118 (347)
                      .-.+++.|+-.    .||. |+++.|+.+++.+...    ...|-.. .                        .+..+.=
T Consensus        26 ak~tIv~FsD~----~Cpy-C~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          26 EKHVITVFTDI----TCGY-CHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             CCEEEEEEECT----TCHH-HHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCEEEEEEeCC----CCHH-HHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            34678889887    7999 8999999998764310    1111000 0                        0000000


Q ss_pred             E--EEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhh
Q 048343          119 C--YLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSR  177 (347)
Q Consensus       119 ~--~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~  177 (347)
                      .  ..+++++.++++++||++.|+++ +..  |..         ..|..+.++|.++|.+.
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~-~~n--G~~---------v~G~~~~e~l~~~i~~~  149 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVV-LSN--GTL---------VPGYQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEE-CTT--SCE---------EESCCCHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcCCcCCCEEE-EeC--CeE---------ecCCCCHHHHHHHHHHH
Confidence            0  11233456899999999999965 433  322         24567889999988764

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.0022  Score=51.81  Aligned_cols=80  Identities=11%  Similarity=0.013  Sum_probs=54.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEE---------------------------
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYL---------------------------  121 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~v---------------------------  121 (347)
                      -.+|+.||-.    .||. |+++.|+.+.+.+...           ++.+...                           
T Consensus        27 k~~I~~FsD~----~CPy-C~~~~~~l~~l~~~~~-----------~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~   90 (150)
T d1t3ba1          27 KHVVTVFMDI----TCHY-CHLLHQQLKEYNDLGI-----------TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALN   90 (150)
T ss_dssp             SEEEEEEECT----TCHH-HHHHHTTHHHHHHTTE-----------EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHH
T ss_pred             CEEEEEEECC----CCHH-HHHHhHHHHHHhccCc-----------eEEEEEecccccchhHHHHHHHHHHhhhHHHhhH
Confidence            3678889887    7999 8999999998876410           1111111                           


Q ss_pred             ---------------EccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          122 ---------------EFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       122 ---------------D~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                                     .++++.++.+++||++-|++++ +.  |..         ..|..++++|.+.|++
T Consensus        91 ~~~~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~-~n--G~~---------i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1          91 EAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVT-ST--GEL---------IGGYLKPADLLRALEE  148 (150)
T ss_dssp             HHHTTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEEC-TT--SCC---------CCSCCCHHHHHHHHHH
T ss_pred             hHhhhccccchhhhhHHHHHHHHHHhcCcCCCCEEEE-cC--CcE---------ecCCCCHHHHHHHHHh
Confidence                           1223457899999999999775 22  332         2456789999998876

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.86  E-value=0.014  Score=45.44  Aligned_cols=63  Identities=13%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccC--CcchHhHcCCCCCceEEEEcCC
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKE--SQSSFALFAVNSLPHIRLVGPD  147 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~--~~~lf~~~~I~svP~l~~fpp~  147 (347)
                      ..+++|+..+   .|+. |.+++.-.+.+|..           ++++-+-..|.+.  +++.+++++++..|++.+..++
T Consensus        24 V~l~~~~~~~---~~~~-~~e~~~ll~ela~l-----------Sdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g   88 (119)
T d1a8la1          24 VKLIVFVRKD---HCQY-CDQLKQLVQELSEL-----------TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG   88 (119)
T ss_dssp             EEEEEEECSS---SCTT-HHHHHHHHHHHHTT-----------CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred             EEEEEEecCC---Cchh-HHHHHHHHHHHHhh-----------CCCeEEEEeccCcchhhhHHHhhccccCceEEEecCC
Confidence            5677777654   6999 79888877777742           4678888888875  5689999999999999999864

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.76  E-value=0.011  Score=48.17  Aligned_cols=94  Identities=12%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             CceEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-----------------------c
Q 048343           68 PYSILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-----------------------F  123 (347)
Q Consensus        68 ~y~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-----------------------~  123 (347)
                      ...+|++|+ +.    ||+. |..-.++|++..+.+.+.       +-+++...+|                       .
T Consensus        44 GK~vvl~f~p~~----~~p~-C~~~~~~~~~~~~~~~~~-------g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~  111 (169)
T d2bmxa1          44 GKWRVVFFWPKD----FTFV-CPTEIAAFSKLNDEFEDR-------DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLS  111 (169)
T ss_dssp             TCEEEEEECSCT----TSCC-CHHHHHHHHHTHHHHHTT-------TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEE
T ss_pred             CCeEEEEEecCC----CCcc-cccccccccccccccccc-------CcceeeccccchhhhhhhcccccccccceEEEEe
Confidence            346777776 44    9999 788899999999888542       1133333333                       1


Q ss_pred             cCCcchHhHcCC-----CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          124 KESQSSFALFAV-----NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       124 ~~~~~lf~~~~I-----~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      |.+.++.++||+     ...|+.++..+. |...  ..........+..+++.+.|++
T Consensus       112 D~~~~v~~~ygv~~~~~~~~r~~fvID~~-G~I~--~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         112 DIKRELSQAAGVLNADGVADRVTFIVDPN-NEIQ--FVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             CTTSHHHHHHTCBCTTSSBCEEEEEECTT-SBEE--EEEEECTTCCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHcCCCccCCccceeEEEEcCC-CEEE--EEEEcCCCCCCCHHHHHHHHHH
Confidence            344578899998     678888888764 4442  0011111123567778777764

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0087  Score=42.42  Aligned_cols=51  Identities=6%  Similarity=0.099  Sum_probs=37.6

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc---chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---~lf~~~~I~svP~l~~  143 (347)
                      ++.||.+    +|+. |++.+..+++                .++-|-.+|+++++   +.++..|.+++|.+++
T Consensus         3 i~iYs~~----~C~~-C~~ak~~L~~----------------~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRN----DCVQ-CHATKRAMEN----------------RGFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECT----TCHH-HHHHHHHHHH----------------TTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCC----CCcc-HHHHHHHHHh----------------cCceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            4567777    8999 6776554432                24678889999876   4456779999999886

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=95.45  E-value=0.0082  Score=42.22  Aligned_cols=51  Identities=4%  Similarity=0.113  Sum_probs=37.3

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc---chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---~lf~~~~I~svP~l~~  143 (347)
                      |+.||.+    +|+. |++...-++        +        .++-|-.+|+++++   +..+.+|.+++|.+++
T Consensus         3 v~iYt~~----~C~~-C~~ak~~L~--------~--------~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (74)
T d1r7ha_           3 ITLYTKP----ACVQ-CTATKKALD--------R--------AGLAYNTVDISLDDEARDYVMALGYVQAPVVEV   56 (74)
T ss_dssp             EEEEECT----TCHH-HHHHHHHHH--------H--------TTCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE
T ss_pred             EEEEeCC----CChh-HHHHHHHHH--------H--------cCCceEEEEccCCHHHHHHHHHhCCCCcCEEEE
Confidence            5678887    8999 677655443        2        24677788888764   5567889999999865

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.23  E-value=0.023  Score=45.28  Aligned_cols=95  Identities=8%  Similarity=0.003  Sum_probs=52.0

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc---------------------CCc
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK---------------------ESQ  127 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~---------------------~~~  127 (347)
                      .+|+.|+ ++    ||++ |..-.|.+++..+.+.+         ..+.+.-+..+                     .+.
T Consensus        32 ~vvl~f~~~~----~cp~-C~~~~~~l~~~~~~~~~---------~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~   97 (160)
T d2cx4a1          32 PAVLIFFPAA----FSPV-CTKELCTFRDKMAQLEK---------ANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNR   97 (160)
T ss_dssp             CEEEEECSCT----TCHH-HHHHHHHHHHTCTTTST---------TCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTS
T ss_pred             EEEEEecccc----cCCc-hhhhhhhhhcccccccc---------cccccccccccchhhhhhhcccceeeEEEeecCCc
Confidence            5777776 55    9999 78777777766555422         22333333222                     234


Q ss_pred             chHhHcCC----------CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcCC
Q 048343          128 SSFALFAV----------NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTKL  180 (347)
Q Consensus       128 ~lf~~~~I----------~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~~  180 (347)
                      ++.+.||+          .+.|+.++..+. |... .....+......+.+++.+-+++..|.
T Consensus        98 ~~~~~~gv~~~~~~~~~~~~~~~~flId~~-G~I~-~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1          98 EVIKLYNVYHEDLKGLKMVAKRAVFIVKPD-GTVA-YKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             HHHHHTTCEEEEETTEEEEECCEEEEECTT-SBEE-EEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             chHHHcCccccccccccccceeeEEEEcCC-CEEE-EEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence            67777777          346777777654 4432 000000011123567777777776653

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0093  Score=43.22  Aligned_cols=56  Identities=9%  Similarity=0.167  Sum_probs=39.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHc--CCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALF--AVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~--~I~svP~l~~  143 (347)
                      +|.|+.+    +|+. |+....-+++....+           ..+-+..+|+++++    .+.++.  +.+++|.+++
T Consensus         3 vviysk~----~Cp~-C~~aK~ll~~~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi   64 (85)
T d1egoa_           3 TVIFGRS----GCPY-CVRAKDLAEKLSNER-----------DDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV   64 (85)
T ss_dssp             EEEECCT----TSTH-HHHHHHHHHHHHHHH-----------SSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE
T ss_pred             EEEEeCC----CCHh-HHHHHHHHHHcCCCC-----------CCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE
Confidence            4667777    8999 799998888877665           24667788887543    333333  4578999876

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=94.72  E-value=0.018  Score=47.05  Aligned_cols=33  Identities=3%  Similarity=-0.113  Sum_probs=27.7

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      ...+|+.|++.+   ||+. |..-.++|++..+.+.+
T Consensus        31 GK~vvl~F~p~~---~~p~-C~~e~~~~~~~~~~f~~   63 (166)
T d1we0a1          31 GKWSIVVFYPAD---FSFV-CPTELEDVQKEYAELKK   63 (166)
T ss_dssp             SSEEEEEECSCT---TCSS-CTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeccc---CCcH-HHHHHHHHHHHHHhhcc
Confidence            346888888765   9999 89999999999999864

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.53  E-value=0.075  Score=42.82  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=25.5

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      .+|+.|+ +.    ||+. |..-.|++++..+++.+
T Consensus        35 ~vVl~F~p~~----~c~~-C~~e~~~l~~~~~~~~~   65 (167)
T d1e2ya_          35 YVVLFFYPMD----FTFV-CPTEIIQFSDDAKRFAE   65 (167)
T ss_dssp             EEEEEECSCS----SCSS-CCHHHHHHHHTHHHHHT
T ss_pred             eEEEEEcccc----cccc-cchhhHHHHHHHHHhhc
Confidence            5888887 55    9999 89999999999999854

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.18  Score=39.11  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=25.6

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      ..+||.|+++    ||+.+|....+.+.++.+....
T Consensus        21 K~vll~F~~t----~C~~~C~~~~~~~~~~~~~~~~   52 (160)
T d1wp0a1          21 QWLLIYFGFT----HCPDVCPEELEKMIQVVDEIDS   52 (160)
T ss_dssp             SEEEEEEECT----TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECC----CCccccccchHHHHHHHHHhhc
Confidence            3799999999    7875588888888888877644

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.01  E-value=0.17  Score=37.79  Aligned_cols=93  Identities=14%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             ChhhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHh
Q 048343           52 NDQLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFA  131 (347)
Q Consensus        52 ~~~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~  131 (347)
                      |.+..++++   +.. +-.+||-|....        =.....+|.++|++.+          +.+.|+..   .++++++
T Consensus         6 ~~~e~~~F~---~~~-d~v~VvGfF~~~--------~~~~~~~F~~~A~~~r----------d~~~F~~t---~d~~va~   60 (102)
T d1a8ya2           6 GERELQAFE---NIE-DEIKLIGYFKNK--------DSEHYKAFKEAAEEFH----------PYIPFFAT---FDSKVAK   60 (102)
T ss_dssp             SHHHHHHHT---TCC-SSCEEEEECSST--------TCHHHHHHHHHHHHHT----------TTSCEEEE---CCHHHHH
T ss_pred             CHHHHHHHh---ccC-CCEEEEEEECCC--------CcHHHHHHHHHHHHcC----------CCceEEEE---CCHHHHH
Confidence            345677776   321 334555554431        1445789999999874          24566654   4668999


Q ss_pred             HcCCCCCceEEEEcCCCCCCCCcccccccccc-ccCHHHHHHHHHhh
Q 048343          132 LFAVNSLPHIRLVGPDAKSLKDDSVQMEQGDF-ARMAESMADFVQSR  177 (347)
Q Consensus       132 ~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~~-~~~a~~l~~fi~~~  177 (347)
                      ++|+. .|.+++|+|-.  +     ....+++ ..+.++|.+||+++
T Consensus        61 ~~~v~-~~~vvlfr~fd--e-----~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          61 KLTLK-LNEIDFYEAFM--E-----EPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             HHCCC-TTCEEEECTTC--S-----SEEECSSSSCCHHHHHHHHHHT
T ss_pred             HcCCC-CCCEEEeeecC--C-----CceecCCCCCCHHHHHHHHHHh
Confidence            99995 79999999831  1     1133444 47899999999875

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.22  Score=37.34  Aligned_cols=91  Identities=11%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             hhHHHHhcccCCCCCceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHc
Q 048343           54 QLVSRFLTSTKTPRPYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALF  133 (347)
Q Consensus        54 ~nf~~lv~~~~~~R~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~  133 (347)
                      +..++++   +.  +-.+||-|....        =.....+|.++|+.. .          ++.|+.+.   ++++++.+
T Consensus         9 ~~~e~f~---~~--~~v~VVGfF~~~--------~~~~~~~F~~~A~~~-~----------d~~F~~t~---~~~v~~~~   61 (110)
T d1bjxa_           9 AAAESLV---ES--SEVAVIGFFKDV--------ESDSAKQFLQAAEAI-D----------DIPFGITS---NSDVFSKY   61 (110)
T ss_dssp             HHHHHHH---HH--SSEEEEEECTTT--------TSHHHHHHHHHHHHC-S----------SSCEEEEC---CSHHHHHT
T ss_pred             HHHHHHh---cc--CCeEEEEEEcCC--------CchHHHHHHHHHHhC-c----------CceEEEEC---CHHHHHHc
Confidence            5677776   22  224556555431        145578999999876 2          34555543   34688999


Q ss_pred             CCCCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHhhcC
Q 048343          134 AVNSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQSRTK  179 (347)
Q Consensus       134 ~I~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~~t~  179 (347)
                      +++. |.+++|+|.. +.      ...+++..+.+.|.+||+.+.-
T Consensus        62 ~v~~-~~Ivl~k~~d-e~------~~~~~~~~~~~~l~~fi~~~~~   99 (110)
T d1bjxa_          62 QLDK-DGVVLFKKFD-EG------RNNFEGEVTKENLLDFIKHNQL   99 (110)
T ss_dssp             TCSS-CEEEEEESSS-SS------BCCCCSCCCHHHHHHHHHHHSS
T ss_pred             CCCC-CeEEEeccCC-cc------ccccCCCCCHHHHHHHHHHcCc
Confidence            9976 9999999842 21      1234556789999999998754

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=93.49  E-value=0.05  Score=38.73  Aligned_cols=51  Identities=10%  Similarity=0.100  Sum_probs=35.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~lf~~~~I~svP~l~~  143 (347)
                      |..|+.+    +|+. |++...-+++                .++-|..+|+++++    ++.+..|.+++|.+++
T Consensus         3 I~iys~~----~Cp~-C~~ak~~L~~----------------~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKE----TCPY-CHRAKALLSS----------------KGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECS----SCHH-HHHHHHHHHH----------------HTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCC----CCHh-HHHHHHHHHH----------------cCCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            4567776    8999 6866544332                14668889998765    4456669999999865

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.45  E-value=0.11  Score=44.86  Aligned_cols=92  Identities=9%  Similarity=0.097  Sum_probs=59.6

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEE-------------------------c
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLE-------------------------F  123 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD-------------------------~  123 (347)
                      .+|++|+ +.    ||+. |..-.++|.+.+..+.+.       +-+++-..+|                         .
T Consensus        31 ~vVLff~P~d----ftpv-CttEl~~~~~~~~ef~~~-------g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fplls   98 (237)
T d2zcta1          31 WFVLFSHPAD----FTPV-CTTEFVSFARRYEDFQRL-------GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIA   98 (237)
T ss_dssp             EEEEEEESCS----SCHH-HHHHHHHHHHTHHHHHHT-------TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEE
T ss_pred             EEEEEEECCC----CCcc-CHHHHHHHHhhhhhhccC-------CcceeeccCCcHHHHHHHhhhhhhhccccccccccc
Confidence            5777777 44    9999 788888888888887542       1133333332                         1


Q ss_pred             cCCcchHhHcCC-------CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          124 KESQSSFALFAV-------NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       124 ~~~~~lf~~~~I-------~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      |.+.++.+.||+       .+.|+.++.-|. |...  ....+....+++++++.+.|.+
T Consensus        99 D~~~~vak~yGv~~~~~~~~~~RatFIIDpd-G~Ir--~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1          99 DPQGTVARRLGLLHAESATHTVRGVFIVDAR-GVIR--TMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             CGGGHHHHHTTCC----CCTTCCEEEEECTT-SBEE--EEEECCTTBCCCHHHHHHHHHH
T ss_pred             CcchHHHHHcCCccccccccceeeeEEECCC-CEEE--EEEEeCCCCCCCHHHHHHHHHH
Confidence            445689999998       578999999875 4532  0111122235788888887753

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.96  E-value=0.12  Score=43.21  Aligned_cols=93  Identities=12%  Similarity=0.230  Sum_probs=56.0

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEc--------------------------
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEF--------------------------  123 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~--------------------------  123 (347)
                      .+|++|+.-+   ||+. |..-.+.|++..+.+.+.       +-+|+-+..|-                          
T Consensus        35 ~vVL~FyP~~---~t~~-C~~E~~~f~~~~~~f~~~-------g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fplls  103 (194)
T d1uula_          35 WLVLFFYPMD---FTFV-CPTEICQFSDRVKEFSDI-------GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILA  103 (194)
T ss_dssp             EEEEEECSCT---TCSH-HHHHHHHHHHTHHHHHTT-------TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEE
T ss_pred             eEEEEEEeCC---cccc-chhhhhHHHhhhhhhccC-------ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceee
Confidence            6888887332   9999 798889999988887532       12333333331                          


Q ss_pred             cCCcchHhHcCC------CCCceEEEEcCCCCCCCCccccccccccccCHHHHHHHHHh
Q 048343          124 KESQSSFALFAV------NSLPHIRLVGPDAKSLKDDSVQMEQGDFARMAESMADFVQS  176 (347)
Q Consensus       124 ~~~~~lf~~~~I------~svP~l~~fpp~~g~~~~~~~~~~~~~~~~~a~~l~~fi~~  176 (347)
                      |...++++.||+      .+.|+.++..|. |...  .-......-++..+++.+.|+.
T Consensus       104 D~~~~v~~~ygv~~~~~~~~~R~tfvID~~-G~I~--~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         104 DKTKCIMKSYGVLKEEDGVAYRGLFIIDPK-QNLR--QITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             CTTCHHHHHHTCEETTTTEECEEEEEECTT-SBEE--EEEEECTTBCCCHHHHHHHHHH
T ss_pred             CCcchHHHHcCCeeccCCceEEEEEEECCC-CeEE--EEEEecCCCCcCHHHHHHHHHH
Confidence            234578888888      446777777764 4432  0001111224667777776654

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=92.61  E-value=0.093  Score=36.46  Aligned_cols=51  Identities=12%  Similarity=0.111  Sum_probs=35.8

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc---chHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ---SSFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~---~lf~~~~I~svP~l~~  143 (347)
                      |+.||.+    +|+. |+.+..-+++                .++-|..+|++++.   ...+..+.+++|.+++
T Consensus         7 I~iYs~~----~C~~-C~~ak~lL~~----------------~~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKP----GCPF-CAKAKQLLHD----------------KGLSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECS----SCHH-HHHHHHHHHH----------------HTCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECC----CCHH-HHHHHHHHHH----------------cCCCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            5778887    8999 6876544332                13566777887653   5566788999999865

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.33  E-value=0.03  Score=42.14  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=36.7

Q ss_pred             EEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCc----c-hHhHcCCCCCceEEE
Q 048343           72 LIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQ----S-SFALFAVNSLPHIRL  143 (347)
Q Consensus        72 vV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~----~-lf~~~~I~svP~l~~  143 (347)
                      ||.||.+    ||+. |+....-+++..    -       ....+.+..+|.+...    + +-+.-|-+++|.+++
T Consensus        14 Vviysk~----~Cp~-C~~ak~ll~~~~----~-------~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi   74 (105)
T d1ktea_          14 VVVFIKP----TCPF-CRKTQELLSQLP----F-------KEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             EEEEECS----SCHH-HHHHHHHHHHSC----B-------CTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             EEEEECC----CCch-HHHHHHHHHHhC----C-------ccceeeeeecccccccHHHHHHHhhccCCCcCcEEEE
Confidence            6678887    8999 788776655321    1       1234667777777543    2 334458899999976

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.43  E-value=0.27  Score=39.18  Aligned_cols=31  Identities=23%  Similarity=0.149  Sum_probs=25.3

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      .+|++|+..+   ||+. |..-.++|++..+.+.+
T Consensus        28 ~vVL~Fyp~~---~tp~-C~~e~~~~~~~~~~~~~   58 (158)
T d1zyea1          28 YLVLFFYPLD---FTFV-CPTEIIAFSDKASEFHD   58 (158)
T ss_dssp             EEEEEECSCT---TCSS-SHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeehh---cCCc-cccchhhHHHhHHHhhc
Confidence            6888888433   9999 79888999999988865

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.06  E-value=0.53  Score=36.11  Aligned_cols=31  Identities=10%  Similarity=0.095  Sum_probs=23.2

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      .+||.|+.+    ||+.||.........+.+....
T Consensus        28 ~vli~f~~t----~c~~~c~~~~~~~~~~~~~~~~   58 (169)
T d2b7ka1          28 FSIIYFGFS----NCPDICPDELDKLGLWLNTLSS   58 (169)
T ss_dssp             CEEEEEECT----TCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecc----ccCCcccchhhhhhhhhhhccc
Confidence            688889988    7877788777777777665543

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=88.68  E-value=0.68  Score=37.15  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=25.0

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHhhh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSFIA  104 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~  104 (347)
                      ..+|+.|+..   .||+. |..-.+.|++..+.+.+
T Consensus        34 ~~vvl~FyP~---~~tp~-C~~e~~~~~~~~~~f~~   65 (170)
T d1zofa1          34 NGVILFFWPK---DFTFV-CPTEIIAFDKRVKDFHE   65 (170)
T ss_dssp             SEEEEEECSC---TTCSS-CCTHHHHHHHTHHHHHH
T ss_pred             CEEEEEEEcc---ccCCc-CHHHHHHHHHhHHhhcc
Confidence            3688888732   29999 79989999998888854

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.08  E-value=0.18  Score=40.54  Aligned_cols=28  Identities=14%  Similarity=0.055  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHH
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVAS  100 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~  100 (347)
                      ..+|+.|++.+   ||+. |..-.|++++.++
T Consensus        44 k~vvl~f~~~~---~~p~-C~~e~~~l~~~~~   71 (166)
T d1xvqa_          44 KSVLLNIFPSV---DTPV-CATSVRTFDERAA   71 (166)
T ss_dssp             SCEEEEECSCC---CSSC-CCHHHHHHHHHHH
T ss_pred             cEEEEEeeecc---cccc-cHHHHHHHhhhcc
Confidence            36888888765   9999 7887777765543

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.22  E-value=0.52  Score=37.65  Aligned_cols=44  Identities=9%  Similarity=-0.011  Sum_probs=32.0

Q ss_pred             ceEEEEEecCCCCCCCh-hhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           69 YSILIFFDAHQLHNKPE-LHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~-~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..+||.|+.+    ||+ . |....+++.++.+.+.+.       +.++.+..+.+|
T Consensus        32 k~vvl~F~~t----~Cp~~-C~~~~~~l~~~~~~~~~~-------~~~v~~v~isiD   76 (172)
T d1xzoa1          32 EVWLADFIFT----NCETI-CPPMTAHMTDLQKKLKAE-------NIDVRIISFSVD   76 (172)
T ss_dssp             CCEEEEEECS----CCSSC-CCSHHHHHHHHHHHHHHT-------TCCCEEEEEESC
T ss_pred             CEEEEEEecc----ccccc-ccccchhhhhhhhhhccc-------cccccccccccc
Confidence            3689999998    786 5 788899999998887542       235655555554

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=87.16  E-value=0.21  Score=39.98  Aligned_cols=30  Identities=7%  Similarity=0.028  Sum_probs=22.7

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      ..+|+.|+..+   ||+. |..-.|.|++.+..+
T Consensus        45 K~vvl~f~~~~---~~p~-C~~~~~~l~~~~~~~   74 (164)
T d1qxha_          45 KRKVLNIFPSI---DTGV-CAASVRKFNQLATEI   74 (164)
T ss_dssp             SEEEEEECSCS---CSSC-CCHHHHHHHHHHHTS
T ss_pred             CeEEEEEecch---hccc-chHHHHHHHHHHHhh
Confidence            35777777443   9999 799999998887654

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.82  E-value=0.42  Score=37.76  Aligned_cols=29  Identities=7%  Similarity=-0.020  Sum_probs=22.0

Q ss_pred             eEEEEEe-cCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           70 SILIFFD-AHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        70 ~vvV~fT-A~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      .++++|+ +.    ||+. |..-.++|++..+.+.
T Consensus        35 ~vvlff~p~~----~cp~-C~~~~~~~~~~~~~~~   64 (156)
T d2a4va1          35 VVVFFVYPRA----STPG-STRQASGFRDNYQELK   64 (156)
T ss_dssp             EEEEEECSSS----SSHH-HHHHHHHHHHHHHHHT
T ss_pred             EEEEEecccc----cCcc-hhhhhHHHHHHHHHHh
Confidence            4555554 33    9999 7999999999888874

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.35  E-value=0.7  Score=36.18  Aligned_cols=42  Identities=14%  Similarity=0.027  Sum_probs=30.7

Q ss_pred             eEEEEEecCCCCCCChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEcc
Q 048343           70 SILIFFDAHQLHNKPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFK  124 (347)
Q Consensus        70 ~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~  124 (347)
                      ..|+.|+..    .||+ |++++|+.+.+.+.+..        ..++.+....+.
T Consensus        26 v~I~ef~d~----~Cp~-C~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   67 (172)
T d1z6ma1          26 VKMIEFINV----RCPY-CRKWFEESEELLAQSVK--------SGKVERIIKLFD   67 (172)
T ss_dssp             EEEEEEECT----TCHH-HHHHHHHHHHHHHHHHH--------TTSEEEEEEECC
T ss_pred             EEEEEEECC----CCHh-HHHHHHHHhhhhhhhcc--------ccceeeeecccc
Confidence            467778876    7999 89999999999887743        235555555443

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.39  E-value=0.53  Score=33.22  Aligned_cols=66  Identities=15%  Similarity=0.047  Sum_probs=44.3

Q ss_pred             CChhhcccchHHHHHHHHHhhhcCCCCCCCCCceEEEEEEccCCcchHhHcCCCCCceEEEEcCCCCCCCCccccccccc
Q 048343           83 KPELHLQELRNEFSLVASSFIANNVDNPSSRGKLFFCYLEFKESQSSFALFAVNSLPHIRLVGPDAKSLKDDSVQMEQGD  162 (347)
Q Consensus        83 ~C~~cC~~l~pefe~vA~s~~~~~p~~~~~~~~v~F~~vD~~~~~~lf~~~~I~svP~l~~fpp~~g~~~~~~~~~~~~~  162 (347)
                      +|+. |.++....++++++.          +-..-.  .+++|-+++. +||+.+.|.+.+=    |+..        ..
T Consensus        10 gC~~-C~~~~~~v~~a~~e~----------gi~a~v--~kv~d~~ei~-~ygVmstPalvId----g~vv--------~~   63 (77)
T d1iloa_          10 GCAN-CQMLEKNAREAVKEL----------GIDAEF--EKIKEMDQIL-EAGLTALPGLAVD----GELK--------IM   63 (77)
T ss_dssp             SSST-THHHHHHHHHHHHHT----------TCCEEE--EEECSHHHHH-HHTCSSSSCEEET----TEEE--------EC
T ss_pred             CCcc-HHHHHHHHHHHHHHc----------CCceEE--EEeCCHHHHH-HcCCcCCCEEEEC----CEEE--------EE
Confidence            7999 799999999988764          112232  2446667776 6999999999872    2211        11


Q ss_pred             c-ccCHHHHHHHH
Q 048343          163 F-ARMAESMADFV  174 (347)
Q Consensus       163 ~-~~~a~~l~~fi  174 (347)
                      | ..+.+++.+||
T Consensus        64 G~vPs~~ei~~~L   76 (77)
T d1iloa_          64 GRVASKEEIKKIL   76 (77)
T ss_dssp             SSCCCHHHHHHHC
T ss_pred             ecCCCHHHHHHHh
Confidence            2 23678888876

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.98  E-value=0.4  Score=37.42  Aligned_cols=28  Identities=14%  Similarity=0.186  Sum_probs=18.3

Q ss_pred             eEEEEE-ecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           70 SILIFF-DAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        70 ~vvV~f-TA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      .+|++| ++.    ||+. |.+-.|++.+..+.+
T Consensus        31 ~vvl~~~~~~----~cp~-C~~e~~~l~~~~~~~   59 (153)
T d1xvwa1          31 NVLLVFFPLA----FTGI-CQGELDQLRDHLPEF   59 (153)
T ss_dssp             EEEEEECSCT----TSSH-HHHHHHHHHHTGGGT
T ss_pred             cEEEEecccc----cccc-hhhhhhhhhhhhhhh
Confidence            355544 455    8999 787777776665554

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.69  E-value=0.56  Score=38.49  Aligned_cols=31  Identities=10%  Similarity=-0.158  Sum_probs=26.4

Q ss_pred             CceEEEEEecCCCCCCChhhcccchHHHHHHHHHhh
Q 048343           68 PYSILIFFDAHQLHNKPELHLQELRNEFSLVASSFI  103 (347)
Q Consensus        68 ~y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~~  103 (347)
                      ...++|.+||+    ||++ |.+--|+++++-+.|.
T Consensus        24 GKvvLivN~AS----~Cg~-t~~~y~~L~~L~~ky~   54 (184)
T d2f8aa1          24 GKVLLIENVAS----LGGT-TVRDYTQMNELQRRLG   54 (184)
T ss_dssp             TSEEEEEEECS----SSTT-HHHHHHHHHHHHHHHG
T ss_pred             CCEEEEEEecc----cCCc-chhhhHHHHHhhhhhc
Confidence            45789999999    8999 7887889999988884

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=80.09  E-value=0.6  Score=36.74  Aligned_cols=29  Identities=3%  Similarity=-0.046  Sum_probs=23.1

Q ss_pred             ceEEEEEecCCCCCCChhhcccchHHHHHHHHHh
Q 048343           69 YSILIFFDAHQLHNKPELHLQELRNEFSLVASSF  102 (347)
Q Consensus        69 y~vvV~fTA~~~~~~C~~cC~~l~pefe~vA~s~  102 (347)
                      -.+||.|...    .|++ |+.++|++..+-+.+
T Consensus        19 ~~~Ivef~d~----~Cp~-C~~~~~~~~~l~~~~   47 (181)
T d1beda_          19 SPVVSEFFSF----YCPH-CNTFEPIIAQLKQQL   47 (181)
T ss_dssp             SCEEEEEECT----TCHH-HHHHHHHHHHHHHTS
T ss_pred             CCEEEEEECC----CCcc-chhhhhhhhhHhhhc
Confidence            3577888876    7999 799999988876654