Citrus Sinensis ID: 048399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANNNRH
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNlgrvksrdFLFHINNVQTWASTaltngntcldgfadksmngkvkdSVTAQVANVVQVTSNALGLFNQFANNNRH
fknlkpkeyRAIADCLELMDDSVDRLSKSVQEMKNlgrvksrdFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNAlglfnqfannnrh
FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDsvtaqvanvvqvtsnALGLFNQFANNNRH
**********AIADCLELM****************LGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQF******
****KPKEYRAIADCLELMDDSVDRLSKSVQE*************FHINNVQTWASTALTNGNTCLDGFADK**********TAQVANVVQVTSNALG****F******
FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANNNRH
FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANN***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANNNRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query109 2.2.26 [Sep-21-2011]
P17407193 21 kDa protein OS=Daucus N/A no 1.0 0.564 0.568 2e-31
Q9FK05 587 Probable pectinesterase/p no no 0.862 0.160 0.346 3e-11
Q9M3B0 598 Probable pectinesterase/p no no 0.844 0.153 0.386 6e-11
Q43143 583 Pectinesterase/pectineste N/A no 0.889 0.166 0.353 9e-11
O04886 584 Pectinesterase 1 OS=Citru no no 0.880 0.164 0.357 9e-11
P83948 584 Pectinesterase 3 OS=Citru no no 0.880 0.164 0.357 1e-10
Q42534 587 Pectinesterase 2 OS=Arabi no no 0.889 0.165 0.343 1e-10
O49006 592 Pectinesterase/pectineste no no 0.954 0.175 0.311 1e-09
Q9M9W7 543 Putative pectinesterase/p no no 0.908 0.182 0.314 2e-07
Q3E8Z8 732 Putative pectinesterase/p no no 0.825 0.122 0.304 2e-07
>sp|P17407|21KD_DAUCA 21 kDa protein OS=Daucus carota PE=2 SV=1 Back     alignment and function desciption
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 80/109 (73%)

Query: 1   FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALT 60
           FK LK ++Y AI DCLE ++DS+DR+S+S  EMKNL   K  DF F ++NV+TW S ALT
Sbjct: 85  FKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALT 144

Query: 61  NGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANNNRH 109
           +  TC+DGFA K M+GK+K+SV AQV  V +VTSNAL L N FA  ++H
Sbjct: 145 DETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKHKH 193

Daucus carota (taxid: 4039)
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description
>sp|Q9M9W7|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1 Back     alignment and function description
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query109
255539735196 21 kDa protein precursor, putative [Rici 0.981 0.545 0.560 2e-30
151347494193 unknown [Carica papaya] 0.981 0.554 0.579 2e-30
217069970196 unknown [Medicago truncatula] gi|3885184 0.981 0.545 0.560 4e-30
112717193 RecName: Full=21 kDa protein; AltName: F 1.0 0.564 0.568 7e-30
225426921199 PREDICTED: 21 kDa protein [Vitis vinifer 0.990 0.542 0.564 7e-30
351727717193 uncharacterized protein LOC100305900 pre 0.944 0.533 0.576 9e-30
357481945 217 Pectinesterase [Medicago truncatula] gi| 0.981 0.493 0.551 1e-29
388514129196 unknown [Medicago truncatula] 0.981 0.545 0.551 1e-29
217075705 217 unknown [Medicago truncatula] 0.981 0.493 0.551 1e-29
224136750199 predicted protein [Populus trichocarpa] 0.972 0.532 0.547 3e-29
>gi|255539735|ref|XP_002510932.1| 21 kDa protein precursor, putative [Ricinus communis] gi|223550047|gb|EEF51534.1| 21 kDa protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 82/107 (76%)

Query: 1   FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALT 60
           FK +KP+E  A+ DCLE +DD+ DRLSKS  E+KNLG  K +DF +H++NV+TW S ALT
Sbjct: 90  FKGVKPREMAALKDCLEEIDDTADRLSKSYNELKNLGHYKGKDFQWHMSNVETWVSAALT 149

Query: 61  NGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANNN 107
           + NTC DGFA K++NGK+K S+ A++  V QVTSNAL L N++A+ +
Sbjct: 150 DENTCTDGFAGKALNGKMKSSIKARIVKVAQVTSNALSLINKYASKH 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|151347494|gb|ABS01356.1| unknown [Carica papaya] Back     alignment and taxonomy information
>gi|217069970|gb|ACJ83345.1| unknown [Medicago truncatula] gi|388518491|gb|AFK47307.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|112717|sp|P17407.1|21KD_DAUCA RecName: Full=21 kDa protein; AltName: Full=1.2 protein; Flags: Precursor gi|18312|emb|CAA36642.1| precursor polypeptide (AA -22 to 171) [Daucus carota] Back     alignment and taxonomy information
>gi|225426921|ref|XP_002264729.1| PREDICTED: 21 kDa protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|351727717|ref|NP_001238450.1| uncharacterized protein LOC100305900 precursor [Glycine max] gi|255626929|gb|ACU13809.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357481945|ref|XP_003611258.1| Pectinesterase [Medicago truncatula] gi|355512593|gb|AES94216.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388514129|gb|AFK45126.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217075705|gb|ACJ86212.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224136750|ref|XP_002322406.1| predicted protein [Populus trichocarpa] gi|118483761|gb|ABK93773.1| unknown [Populus trichocarpa] gi|222869402|gb|EEF06533.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query109
TAIR|locus:2099545202 AT3G47380 [Arabidopsis thalian 0.954 0.514 0.466 3.9e-21
TAIR|locus:2168003202 AT5G62350 [Arabidopsis thalian 0.944 0.509 0.471 4.9e-21
TAIR|locus:2026237204 AT1G62770 [Arabidopsis thalian 0.917 0.490 0.475 4.4e-20
TAIR|locus:2122624201 AT4G25260 [Arabidopsis thalian 0.981 0.532 0.407 2.8e-18
TAIR|locus:2139094206 PME1 "pectin methylesterase in 0.981 0.519 0.394 2.5e-17
TAIR|locus:2167893203 AT5G62360 [Arabidopsis thalian 0.908 0.487 0.401 5.4e-15
TAIR|locus:2180484205 AT5G20740 [Arabidopsis thalian 0.880 0.468 0.376 1.2e-12
TAIR|locus:2126916209 UNE11 "unfertilized embryo sac 0.917 0.478 0.336 3.9e-12
TAIR|locus:2006842219 AT1G14890 [Arabidopsis thalian 0.880 0.438 0.326 1.7e-11
TAIR|locus:2033590200 AT1G70720 [Arabidopsis thalian 0.862 0.47 0.35 4.5e-11
TAIR|locus:2099545 AT3G47380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 49/105 (46%), Positives = 65/105 (61%)

Query:     1 FKNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRD-FLFHINNVQTWASTAL 59
             F +LK +E +A+ DC+E + D+VDRL+ S+ E+K  G  K RD F FH++N QTW S AL
Sbjct:    95 FTSLKKREIQAVKDCIEEIHDAVDRLTMSIHEVKMCGSAKGRDQFWFHMSNAQTWTSAAL 154

Query:    60 TNGNTCLDGFADKSMNGKVKDXXXXXXXXXXXXXXXALGLFNQFA 104
             TN NTC DGFA + M+G+VK+               AL L N FA
Sbjct:   155 TNANTCSDGFAGRVMDGRVKNSVRARILNLGRGTSNALALINAFA 199
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0030599 "pectinesterase activity" evidence=IEA
GO:0046910 "pectinesterase inhibitor activity" evidence=ISS
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045088 "regulation of innate immune response" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2168003 AT5G62350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026237 AT1G62770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122624 AT4G25260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139094 PME1 "pectin methylesterase inhibitor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167893 AT5G62360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180484 AT5G20740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126916 UNE11 "unfertilized embryo sac 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006842 AT1G14890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033590 AT1G70720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007280001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (199 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025571001
SubName- Full=Polygalacturonase PG1 (Chromosome chr8 scaffold_34, whole genome shotgun sequence [...] (444 aa)
      • 0.483

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query109
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 4e-23
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-17
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-17
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 5e-15
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 6e-13
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-12
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 2e-11
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-10
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 4e-10
PLN02314 586 PLN02314, PLN02314, pectinesterase 6e-10
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 2e-09
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 7e-09
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 2e-08
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 5e-08
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-07
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-06
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 4e-06
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 7e-06
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-05
PLN02488 509 PLN02488, PLN02488, probable pectinesterase/pectin 5e-05
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 3e-04
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 0.004
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information 
 Score = 86.7 bits (215), Expect = 4e-23
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 12/98 (12%)

Query: 2   KNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTN 61
           K   P+   A+ DCLEL DD+VD L K+++E+K+             ++V TW S ALT+
Sbjct: 63  KTKDPRLKAALKDCLELYDDAVDSLEKALEELKS----------GDYDDVATWLSAALTD 112

Query: 62  GNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGL 99
            +TCLDGF +   + KVK  +T +  N+ ++TSNAL +
Sbjct: 113 QDTCLDGFEE--NDDKVKSPLTKRNDNLEKLTSNALAI 148

This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical. Length = 148
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 109
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 99.94
PLN02313 587 Pectinesterase/pectinesterase inhibitor 99.94
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 99.93
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 99.93
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 99.93
PLN02314 586 pectinesterase 99.93
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 99.93
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 99.93
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 99.92
PLN02197 588 pectinesterase 99.92
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 99.92
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 99.91
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 99.91
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 99.9
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 99.9
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 99.9
PLN02301 548 pectinesterase/pectinesterase inhibitor 99.9
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 99.9
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 99.89
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.89
PLN02916 502 pectinesterase family protein 99.86
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 99.85
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.84
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.8
PF0295366 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP 83.52
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=99.94  E-value=1.8e-26  Score=187.09  Aligned_cols=98  Identities=20%  Similarity=0.413  Sum_probs=85.0

Q ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399            3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV   82 (109)
Q Consensus         3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~   82 (109)
                      +++|+++.||+||+|+|++++++|++++..|   +..+...+...++|++||||||||||+||+|||.+.+  +++++.|
T Consensus       114 ~~~~r~k~Al~DC~ELlddAvdeL~~Sl~~l---~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~e~~--s~lk~~~  188 (572)
T PLN02990        114 ANDPETKGALELCEKLMNDATDDLKKCLDNF---DGFSIDQIEDFVEDLRVWLSGSIAYQQTCMDTFEEIK--SNLSQDM  188 (572)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccccccchhHHHHHHHHHHhccHhhHHHhhhccc--hhHHHHH
Confidence            6899999999999999999999999999999   4322223345679999999999999999999998643  4689999


Q ss_pred             HHHHHHHHHHHHHHHHHhhchhh
Q 048399           83 TAQVANVVQVTSNALGLFNQFAN  105 (109)
Q Consensus        83 ~~~~~~~~~l~SnaLai~~~l~~  105 (109)
                      ...+.++.+|+||||||++.+..
T Consensus       189 ~~~l~nv~~LtSNALAiv~~~~~  211 (572)
T PLN02990        189 LKIFKTSRELTSNGLAMITNISN  211 (572)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999998664

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query109
1x91_A153 Invertase/pectin methylesterase inhibitor family p 3e-20
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 2e-19
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
 Score = 78.9 bits (194), Expect = 3e-20
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 13/105 (12%)

Query: 2   KNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTN 61
             + P+   A   C++  + ++  L ++ + + +               +    S AL  
Sbjct: 62  GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLAS----------GDGMGMNMKVSAALDG 111

Query: 62  GNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANN 106
            +TCLD          V  SV      +  +   AL + N    N
Sbjct: 112 ADTCLDDVKRL---RSVDSSVVNNSKTIKNLCGIALVISNMLPRN 153
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query109
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.93
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.92
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.89
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
Probab=99.93  E-value=1.9e-25  Score=152.09  Aligned_cols=88  Identities=19%  Similarity=0.315  Sum_probs=79.8

Q ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHH
Q 048399            4 LKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVT   83 (109)
Q Consensus         4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~   83 (109)
                      .+|+.+.||+||.++|++++++|++++..|   ..+       .++|++||||+|+||++||+|||.+.+   +++++|.
T Consensus        64 ~~~~~~~al~dC~e~y~~a~~~L~~a~~~l---~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~  130 (153)
T 1x91_A           64 VDPRSKLAYRSCVDEYESAIGNLEEAFEHL---ASG-------DGMGMNMKVSAALDGADTCLDDVKRLR---SVDSSVV  130 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-------CHHHHHHHHHHHHccHhHHHHHhccCC---CCcCHHH
Confidence            379999999999999999999999999999   532       589999999999999999999998753   4678899


Q ss_pred             HHHHHHHHHHHHHHHHhhchh
Q 048399           84 AQVANVVQVTSNALGLFNQFA  104 (109)
Q Consensus        84 ~~~~~~~~l~SnaLai~~~l~  104 (109)
                      ..+.++.+|+||+|+|++.+.
T Consensus       131 ~~~~~~~~l~s~aLai~~~l~  151 (153)
T 1x91_A          131 NNSKTIKNLCGIALVISNMLP  151 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHhHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999875
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 109
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 1e-17
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 2e-13
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Pectin methylesterase inhibitor 1, PMEI1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.9 bits (173), Expect = 1e-17
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 13/105 (12%)

Query: 2   KNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTN 61
             + P+   A   C++  + ++  L ++ + + +               +    S AL  
Sbjct: 58  GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASG----------DGMGMNMKVSAALDG 107

Query: 62  GNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANN 106
            +TCLD          V  SV      +  +   AL + N    N
Sbjct: 108 ADTCLDDVKRL---RSVDSSVVNNSKTIKNLCGIALVISNMLPRN 149
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query109
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.89
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.84
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Pectin methylesterase inhibitor 1, PMEI1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=3.6e-23  Score=138.58  Aligned_cols=90  Identities=19%  Similarity=0.311  Sum_probs=80.6

Q ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399            3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV   82 (109)
Q Consensus         3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~   82 (109)
                      +.+|+.+.||++|.++|++++++|++++..|   +.+       .+.|+++|||+|+++++||+|||.+.+   +..++|
T Consensus        59 ~~~~~~~~al~~C~~~y~~a~~~L~~a~~~l---~~~-------~~~~~~~~lsaa~~~~~tC~d~f~~~~---~~~s~l  125 (149)
T d1x91a_          59 GVDPRSKLAYRSCVDEYESAIGNLEEAFEHL---ASG-------DGMGMNMKVSAALDGADTCLDDVKRLR---SVDSSV  125 (149)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC-------CHHHHHHHHHHHHHhHhHhHHHHhhcC---CCCcHH
Confidence            4689999999999999999999999999999   543       589999999999999999999998642   456788


Q ss_pred             HHHHHHHHHHHHHHHHHhhchhh
Q 048399           83 TAQVANVVQVTSNALGLFNQFAN  105 (109)
Q Consensus        83 ~~~~~~~~~l~SnaLai~~~l~~  105 (109)
                      ..+...+.+|++|+|+|++.|..
T Consensus       126 ~~~~~~~~~l~~ialai~~~L~~  148 (149)
T d1x91a_         126 VNNSKTIKNLCGIALVISNMLPR  148 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999998753
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure