Citrus Sinensis ID: 048410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSPIFSI
Secondary Structure (PSIPRED)
cccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccccHHccccHHHHHHHHHcccccccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHHcHHHHHHHccccccccHHHHHHHcccHHHHHHHHHccHHHHHHHccccccHHHHHHHcccHHHHHHHHHccccHHEEcccccccHHHHHHHHHHHHHHHHcHHHHHHcccccccHEEEEEHccccccc
Coil and Loop (DISEMBL)
MSHYVILAAQAGNVDALYELIWEDaylldqidrvpfvdtplHIAASMGHVNFALEIMRlkpsfarkqnqygfsplhlALQNSHTQMVLRLIDVDrnlvrvqgregvtplhygnVDLLYKFLAACPESILQVTIyfpillpfsskfspifsi
Flexible Loop (DISEMBL)
MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRegvtplhyGNVDLLYKFLAACPESILQVTIYFPILLpfsskfspifsi
Low Complexity Region (SEG)
MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACPESILQVTIYFPILLpfsskfspifsi
Disordered region (IsUnstruct)
***YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACPESILQVTIYFPILLPFSSKF******
Disordered Region (DISOPRED)
MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSPIFSI
Disordered Region (DISEMBL)
MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSPIFSI
Disordered Region (DISPRO)
*SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSPIF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSPIFSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.668	0.071	0.339	1e-07
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.463	0.037	0.388	2e-05
Q502K3	1071	Serine/threonine-protein	no	no	0.682	0.096	0.342	2e-05
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.463	0.131	0.328	3e-05
Q505D1	1053	Serine/threonine-protein	no	no	0.476	0.068	0.378	3e-05
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.463	0.037	0.388	3e-05
Q5F478	990	Serine/threonine-protein	no	no	0.463	0.070	0.410	4e-05
Q8BTI7	1076	Serine/threonine-protein	no	no	0.675	0.094	0.296	5e-05
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.463	0.017	0.375	6e-05
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.463	0.017	0.375	6e-05

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
           AA AGN D    L+ +D  LL++ D+  +  TPLHIAA     +F + ++        + 
Sbjct: 507 AASAGNYDVGELLLNKDINLLEKADKNGY--TPLHIAADSNKNDFVMFLIGNNADVNVRT 564

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
               F+PLHLA +   T +   LID+    +  Q + G TPLH
Sbjct: 565 KSDLFTPLHLAARRDLTDVTQTLIDITEIDLNAQDKSGFTPLH 607

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.
Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLHIAA    +  A  +++   S A  ++  G +PLHLA Q  HT+MV  L+    N  
Sbjct: 600 TPLHIAAKQNQIEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHTEMVALLLSKQAN-G 657

Query: 99  RVQGREGVTPLH 110
            +  + G+TPLH
Sbjct: 658 NLGNKSGLTPLH 669

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVD----TPLHIAASMGHVNFALEIMRLKPS 62
           LAA  G+ D L  L+    +   Q    P  D    TP H AA  GH +    ++ LKP 
Sbjct: 754 LAASCGHADILSNLLSAADHSQPQD---PLTDRHGYTPAHWAAYHGHEDCLEVLLELKPC 810

Query: 63  FARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYGNV 114
             ++ N   F+PLH AL N H+     L++  V  +LV ++  +G TPLH   V
Sbjct: 811 SIQEGNP--FTPLHCALINGHSGSAELLLESSVCNSLVNIRDAKGRTPLHAAAV 862

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 41  LHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRV 100
            H+AA  GH+    E++RL P   R  +    SPL+ A    H ++V  ++DVD +   +
Sbjct: 98  FHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMI 157

Query: 101 QGREGVTPLH 110
             + G T LH
Sbjct: 158 VRKNGKTSLH 167

Arabidopsis thaliana (taxid: 3702)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLH AAS G ++    ++ L      + N YG +PLH+A  N    +V  LID   N V
Sbjct: 208 TPLHAAASSGMISVVKYLLDLGVDM-NEPNAYGNTPLHVACYNGQDVVVNELIDCGAN-V 265

Query: 99  RVQGREGVTPLHYG 112
             +  +G TPLH+ 
Sbjct: 266 NQKNEKGFTPLHFA 279

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLHIAA    V  A  +++   S A  ++  G +PLHLA Q  H +MV  L+    N  
Sbjct: 604 TPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-G 661

Query: 99  RVQGREGVTPLH 110
            +  + G+TPLH
Sbjct: 662 NLGNKSGLTPLH 673

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID-VDRNL 97
           TPLH A   GH N  +E++ L+  F RK     FSPLH A+ N H      LI  +D ++
Sbjct: 771 TPLHWACYNGHEN-CIEVL-LEQKFFRKFYGNSFSPLHCAVINDHENCASMLIGAIDASI 828

Query: 98  VRVQGREGVTPLH 110
           V  +  +G TPLH
Sbjct: 829 VNCKDDKGRTPLH 841

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q8BTI7|ANR52_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Mus musculus GN=Ankrd52 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRV-PFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           AA +G ++ +  L+   A    +ID    F +T LHIA  +G    A+E++    +   +
Sbjct: 213 AAASGQIEVVKHLLRMGA----EIDEPNAFGNTALHIACYLGQDAVAIELVNAGAN-VNQ 267

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNV 114
            N  GF+PLH+A  +++  + L L+  +   V  Q +EG +PLH   +
Sbjct: 268 PNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAI 315

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLHIAA  G+VN A  ++  + +      + G +PLH+A +  +T MV  L+D     +
Sbjct: 235 TPLHIAAHYGNVNVATLLLN-RGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQ-I 292

Query: 99  RVQGREGVTPLH 110
             + R+G+TPLH
Sbjct: 293 DAKTRDGLTPLH 304

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLHIAA  G+VN A  ++  + +      + G +PLH+A +  +T MV  L+D     +
Sbjct: 235 TPLHIAAHYGNVNVATLLLN-RGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQ-I 292

Query: 99  RVQGREGVTPLH 110
             + R+G+TPLH
Sbjct: 293 DAKTRDGLTPLH 304

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
357517641	450	Ankyrin repeat protein [Medicago truncat	0.841	0.282	0.618	2e-40
357475715	398	Ankyrin repeat-containing protein [Medic	0.841	0.319	0.618	3e-40
357456647	634	Ankyrin repeat-containing protein [Medic	0.874	0.208	0.573	1e-39
357465949	427	Ankyrin repeat domain-containing protein	0.920	0.325	0.545	4e-38
356514663	377	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.854	0.342	0.563	5e-38
356545491	452	PREDICTED: death-associated protein kina	0.841	0.280	0.557	1e-37
356514711	418	PREDICTED: ankyrin repeat-containing pro	0.834	0.301	0.561	2e-37
357517245	452	Ankyrin-1 [Medicago truncatula] gi|35552	0.834	0.278	0.592	2e-37
357517511	447	Ankyrin repeat protein [Medicago truncat	0.907	0.306	0.539	3e-37
356514671	399	PREDICTED: ankyrin-3-like [Glycine max]	0.920	0.348	0.524	5e-37

>gi|357517641|ref|XP_003629109.1| Ankyrin repeat protein [Medicago truncatula] gi|355523131|gb|AET03585.1| Ankyrin repeat protein [Medicago truncatula]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 4/131 (3%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           +AAQ G+++ LY LI ED Y+L+ ID +PFV+TPLHIAASMGHV FA EIMRLKPSFA K
Sbjct: 13  VAAQEGDINLLYTLIEEDPYVLEYIDLIPFVETPLHIAASMGHVQFATEIMRLKPSFAWK 72

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA 122
            NQ GFSP+HLALQN+   MVLR +D+++ LVR++G+EG+TPLH     G +DLL  FL 
Sbjct: 73  LNQQGFSPIHLALQNNQKSMVLRFVDMNKELVRIKGKEGLTPLHLACQSGEIDLLANFLF 132

Query: 123 ACPESILQVTI 133
            CP SI  VT+
Sbjct: 133 VCPNSIEDVTV 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475715|ref|XP_003608143.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355509198|gb|AES90340.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 4/131 (3%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           +AAQ G+++ LY LI ED Y+L+ ID +PFV+TPLHIAASMGHV FA EIMRLKPSFA K
Sbjct: 160 VAAQEGDINLLYTLIEEDPYVLEYIDLIPFVETPLHIAASMGHVQFATEIMRLKPSFAWK 219

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA 122
            NQ GFSP+HLALQN+   MVLR +D+++ LVR++G+EG+TPLH     G +DLL  FL 
Sbjct: 220 LNQQGFSPIHLALQNNQKSMVLRFVDMNKELVRIKGKEGLTPLHLACQSGEIDLLANFLF 279

Query: 123 ACPESILQVTI 133
            CP SI  VT+
Sbjct: 280 VCPNSIEDVTV 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456647|ref|XP_003598604.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355487652|gb|AES68855.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 104/136 (76%), Gaps = 4/136 (2%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
           AA+AG++D LY +I +D ++L+ ID +PFV+TPLHIAASMGH+ FA EIM+LKPSFA K 
Sbjct: 13  AAEAGDIDLLYTVIQDDPFILEMIDLIPFVETPLHIAASMGHLQFASEIMKLKPSFAWKL 72

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA 123
           NQ GFSP+HLA+QN+   MV R ++ +++LVRV+GR G+TPLH+    G V+LL  FL A
Sbjct: 73  NQQGFSPIHLAMQNNQNSMVTRFVNFNKDLVRVEGRNGITPLHFASQIGEVELLANFLFA 132

Query: 124 CPESILQVTIYFPILL 139
           CPESI  +T+ F   L
Sbjct: 133 CPESIEYLTVRFETAL 148

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465949|ref|XP_003603259.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355492307|gb|AES73510.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/143 (54%), Positives = 104/143 (72%), Gaps = 4/143 (2%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
           AAQ G++D L++LI  D Y+L++ + +PFVDTPLHIAA+ GH +FA EIMRLKPSFA K 
Sbjct: 8   AAQMGDIDLLFKLIQIDPYILERYNLIPFVDTPLHIAAASGHTSFATEIMRLKPSFAWKL 67

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLYKFLAA 123
           N+YG SP+HLALQN + +MV R +D++++LVRV+GREG+TPLH     GN DL+ KFL  
Sbjct: 68  NEYGLSPIHLALQNKYHRMVCRFVDINKDLVRVKGREGLTPLHIATQTGNFDLVVKFLFV 127

Query: 124 CPESILQVTIYFPILLPFSSKFS 146
           CP  I  VT+     L  + K+ 
Sbjct: 128 CPGCIEDVTVRSETALHIAVKYK 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514663|ref|XP_003526023.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 5   VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA 64
           V LAAQ G++D LY +I E+ ++L+ ID +PFVDTPLH+AAS+GH+ F  E+MRLKPSFA
Sbjct: 32  VNLAAQEGDIDGLYTVIQENPHVLEDIDSIPFVDTPLHVAASVGHLRFVTEVMRLKPSFA 91

Query: 65  RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLYKF 120
            KQN  G +P+HLALQ+ H  +VLRL+ ++ +LVR +GR+G TPLH     G +DLL KF
Sbjct: 92  WKQNPEGLTPIHLALQHGHDNVVLRLVSINNDLVRAKGRKGRTPLHLASKKGEIDLLTKF 151

Query: 121 LAACPESILQVTI 133
           L ACP  I  VT+
Sbjct: 152 LLACPNCIEDVTV 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545491|ref|XP_003541175.1| PREDICTED: death-associated protein kinase 1-like [Glycine max]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 98/131 (74%), Gaps = 4/131 (3%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           +AAQ G++  LY LI ED ++LD +D  PF +TPLHI A +GH+ FA EIMRLKPSFA K
Sbjct: 10  VAAQEGDISLLYTLIQEDLHVLDHMDLTPFAETPLHIVACVGHLQFATEIMRLKPSFASK 69

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA 122
            NQ GF+P+HL +Q+   +MVLR +D++++LVRV+GREG+TP H+    G +DLL  FL 
Sbjct: 70  LNQQGFTPIHLDMQHGQKRMVLRFVDINKDLVRVKGREGLTPFHFASQKGEIDLLANFLL 129

Query: 123 ACPESILQVTI 133
           ACP+SI  VT+
Sbjct: 130 ACPDSIEDVTV 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514711|ref|XP_003526047.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 101/130 (77%), Gaps = 4/130 (3%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           +AA+  N+D LY+ I +D  +L+ ID +PFV+TPLH+AA++GH  FA EIM LKPSFA+K
Sbjct: 8   VAAEGNNIDGLYQEIQQDPRILESIDSIPFVETPLHVAATLGHFEFATEIMTLKPSFAQK 67

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGN----VDLLYKFLA 122
            N  GF+P+HLALQ +H +MVLRL++++++LVRV+GREG TPLH  +     +LL+KFL 
Sbjct: 68  LNPEGFTPIHLALQCNHDEMVLRLVEMNKDLVRVKGREGFTPLHLASQENKTELLHKFLK 127

Query: 123 ACPESILQVT 132
           ACP+SI  VT
Sbjct: 128 ACPDSIEDVT 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517245|ref|XP_003628911.1| Ankyrin-1 [Medicago truncatula] gi|355522933|gb|AET03387.1| Ankyrin-1 [Medicago truncatula]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 99/130 (76%), Gaps = 4/130 (3%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
           AA AG+V+ LY +I +D Y+L++ID +PFV+TPLHIAASMGH+ FA EIM LKPSFA K 
Sbjct: 15  AAHAGDVNLLYTVIQDDPYVLERIDLIPFVETPLHIAASMGHLPFATEIMTLKPSFALKL 74

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA 123
           N  GFSP+HLA+QN   QMV R + ++++LVRV+GR+G+TPLH+    G VDLL  FL  
Sbjct: 75  NPQGFSPIHLAMQNDQKQMVYRFVKINKDLVRVRGRDGLTPLHFASQIGEVDLLAHFLLL 134

Query: 124 CPESILQVTI 133
           CPESI   T+
Sbjct: 135 CPESIEDWTV 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517511|ref|XP_003629044.1| Ankyrin repeat protein [Medicago truncatula] gi|355523066|gb|AET03520.1| Ankyrin repeat protein [Medicago truncatula]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 103/141 (73%), Gaps = 4/141 (2%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
           AA+AG++D LY +I +D Y+L+ ID +PFV+TPLHIAASMGH++FA+EIM LKPSFA K 
Sbjct: 13  AAEAGDIDLLYTVIQDDPYILEHIDSIPFVETPLHIAASMGHIDFAIEIMNLKPSFALKL 72

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA 123
           N  GFSP+HLA+Q +  +MV   + ++++LVRV+GREG+TPLH+    G V +L  FL  
Sbjct: 73  NPQGFSPIHLAMQKNKKRMVYHFVSINKDLVRVRGREGITPLHFACQNGEVQMLAYFLRL 132

Query: 124 CPESILQVTIYFPILLPFSSK 144
           CPESI  +T+     L  S K
Sbjct: 133 CPESIEYLTVRRETALHISVK 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514671|ref|XP_003526027.1| PREDICTED: ankyrin-3-like [Glycine max]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/143 (52%), Positives = 104/143 (72%), Gaps = 4/143 (2%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           +AAQ G+++ LY +I ED  +L+  D + FV+TPLHIA+S G++ FA EIMRLKPS A K
Sbjct: 15  VAAQEGDINLLYTVIEEDPQVLEHNDLISFVETPLHIASSCGNIGFATEIMRLKPSLAWK 74

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA 122
            NQ GF+P+HLA+Q+SH +MV RL+D+++ LVR +GREG+TPLH+    G +DLL  FL 
Sbjct: 75  LNQQGFTPIHLAMQHSHKRMVHRLVDINKELVRAKGREGLTPLHFASQIGEIDLLANFLL 134

Query: 123 ACPESILQVTIYFPILLPFSSKF 145
           ACP+SI  VTI     L  + ++
Sbjct: 135 ACPDSIEDVTIRGETALHIAVRY 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.880	0.298	0.503	3.2e-33
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.834	0.275	0.523	1.8e-32
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.880	0.312	0.496	3.3e-31
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.880	0.308	0.489	3.8e-30
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.834	0.288	0.476	2.4e-28
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.834	0.285	0.476	2.8e-27
TAIR|locus:2123406	406	AT4G11000 "AT4G11000" [Arabido	0.529	0.197	0.612	6.2e-21
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.602	0.151	0.319	1e-08
FB|FBgn0016920	1726	nompC "no mechanoreceptor pote	0.807	0.070	0.303	1.9e-08
ZFIN|ZDB-GENE-041014-19	744	si:dkey-86e18.2 "si:dkey-86e18	0.741	0.150	0.314	2.1e-07

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 69/137 (50%), Positives = 98/137 (71%)

Query:     1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
             M   +I+A Q G++D LY  I E+ Y+L+ ID +PF++TPLHIA++ G+++FA+E+M LK
Sbjct:     1 MDPRLIVATQIGSIDELYAHIHENPYILEIIDAIPFINTPLHIASASGNLSFAMELMNLK 60

Query:    61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDL 116
             PSFARK N YG SPLHLA++   T++VL L+ VD +LVR++GREG+TP H     G  DL
Sbjct:    61 PSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDL 120

Query:   117 LYKFLAACPESILQVTI 133
             + +FL ACP  I    +
Sbjct:   121 MTEFLLACPGCIKDANV 137

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 68/130 (52%), Positives = 93/130 (71%)

Query:     8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
             AA++GN+D LYELI ED Y+LD+ D VPFV+TPLH+AA  G   FA+E+M LKPSFARK 
Sbjct:     9 AAKSGNIDLLYELIHEDPYVLDKTDHVPFVNTPLHVAAVNGKTEFAMEMMNLKPSFARKL 68

Query:    68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYG----NVDLLYKFLAA 123
             N  G +PLHLA+++ H  +VL ++ VD +LVR++GR G+TPL        +DL+ +F   
Sbjct:    69 NADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLLVAVSRKKIDLMSEFFLG 128

Query:   124 CPESILQVTI 133
             CPESI+   +
Sbjct:   129 CPESIVDANV 138

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 68/137 (49%), Positives = 95/137 (69%)

Query:     1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
             M   ++L  Q+G+VD LY LI     +L ++D +P + TPLH A+S G ++ A+E+M LK
Sbjct:     1 MDSKLLLVTQSGSVDDLYSLIQAAPDILQKVDVLPIIHTPLHEASSAGKLDLAMELMILK 60

Query:    61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDL 116
             PSFA+K N+YG SPLHLA++N   ++ L L+ VD +LVR++GR G+TPLH     G+VDL
Sbjct:    61 PSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDL 120

Query:   117 LYKFLAACPESILQVTI 133
             L  FL ACPESI  V +
Sbjct:   121 LTDFLLACPESIKDVNV 137

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 67/137 (48%), Positives = 92/137 (67%)

Query:     1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
             M   ++    +GNVDALY LI +D Y+L  ID +PFV TPLH A+S G  + A+E+M LK
Sbjct:     1 MDRRLLWVTDSGNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLK 60

Query:    61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDL 116
             P+FA+K N  G SPLHLA++N   Q+ L L+ ++ +LV V GR+G+TPLH     G+ +L
Sbjct:    61 PTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDANL 120

Query:   117 LYKFLAACPESILQVTI 133
             L +FL ACPESI    +
Sbjct:   121 LTEFLLACPESIKDTNV 137

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 62/130 (47%), Positives = 91/130 (70%)

Query:     8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
             AA+ G+++  Y LI E+ Y+LD I+ VPFV+TPLH+AA+  ++ FA+E++ LKPSFARK 
Sbjct:     8 AAETGSINDFYALIEENPYILDNINAVPFVNTPLHVAAASDNIPFAMEMLNLKPSFARKL 67

Query:    68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA 123
             N  G+SPLHLA++  H + +  L+  D  LVRV+GREG+TP H     G+V+L+ + L  
Sbjct:    68 NTSGYSPLHLAVEKDHREFITWLLWRDPGLVRVKGREGITPFHLLAIRGDVNLVAECLKY 127

Query:   124 CPESILQVTI 133
             CP  I  V++
Sbjct:   128 CPVCIQDVSV 137

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/130 (47%), Positives = 87/130 (66%)

Query:     8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
             AA++G+++ LY LI E+ Y+L+ ID VPFV TPLH+AA  G++ FA+E++ LKPSFARK 
Sbjct:     8 AAESGSINELYALIDENPYILENIDAVPFVSTPLHVAAVFGNIEFAMEMLNLKPSFARKL 67

Query:    68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA 123
             N  G+SPLHLA++   +  V  ++  D  L RV+GR GVTP H     G+ DL+ + L  
Sbjct:    68 NTSGYSPLHLAVEKEQSDFVSHMLWHDGGLSRVKGRNGVTPFHLLVIRGDDDLVAECLIT 127

Query:   124 CPESILQVTI 133
              PE I  V +
Sbjct:   128 SPECIEDVNV 137

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123406 AT4G11000 "AT4G11000" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 6.2e-21, P = 6.2e-21
 Identities = 49/80 (61%), Positives = 59/80 (73%)

Query:     9 AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
             AQ G+++ LYELI ED  +LD  D+V F +TPLHIAA  G  +FA+E+M LKPS A K N
Sbjct:    46 AQVGDIERLYELIAEDPNILDHFDKVSFCETPLHIAAEKGQTHFAMELMTLKPSLALKLN 105

Query:    69 QYGFSPLHLALQNSHTQMVL 88
               GFSPLHLALQN+H Q VL
Sbjct:   106 VSGFSPLHLALQNNHIQTVL 125

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 30/94 (31%), Positives = 48/94 (51%)

Query:    38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
             +T LH+AA +GH     +I+ L+PS    +N YG +PLHLA       +V++++D    L
Sbjct:    38 NTVLHVAAKLGHRELVAKIIELRPSLLSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLEL 97

Query:    98 VRVQGREGVTPLHYGNVDLLY---KFLAACPESI 128
                +  +  TPLH   V +     KF+     S+
Sbjct:    98 YSARNNKNQTPLHLAFVSIFMEAAKFIVEKTNSV 131

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0016920 nompC "no mechanoreceptor potential C" [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 40/132 (30%), Positives = 73/132 (55%)

Query:     7 LAAQAGNVDALYELI-WEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
             +AA  G+V  + EL+ ++ + ++   +++    TPL +AA  GH +    ++R   S   
Sbjct:   833 IAAMQGSVKVIEELMKFDRSGVISARNKLTDA-TPLQLAAEGGHADVVKALVRAGAS-CT 890

Query:    66 KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-GVTPLH----YGNVDLLYKF 120
             ++N+ GF+ +HLA QN H Q VL ++    N +R+  ++ G+TPLH    YG  D + + 
Sbjct:   891 EENKAGFTAVHLAAQNGHGQ-VLDVLK-STNSLRINSKKLGLTPLHVAAYYGQADTVREL 948

Query:   121 LAACPESILQVT 132
             L + P ++   T
Sbjct:   949 LTSVPATVKSET 960

GO:0005262 "calcium channel activity" evidence=IEA;ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0005216 "ion channel activity" evidence=ISS

GO:0008381 "mechanically-gated ion channel activity" evidence=NAS;TAS

GO:0050954 "sensory perception of mechanical stimulus" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0030506 "ankyrin binding" evidence=NAS

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=TAS

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0040011 "locomotion" evidence=IMP

GO:0050975 "sensory perception of touch" evidence=IMP

ZFIN|ZDB-GENE-041014-19 si:dkey-86e18.2 "si:dkey-86e18.2" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 38/121 (31%), Positives = 61/121 (50%)

Query:     7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
             LA Q+G++     L+ +    +D     P   TPLH++AS         ++R+       
Sbjct:   450 LAVQSGSIQIAQILLHKG---IDPNISGPKDQTPLHLSASHNQPAMMALLLRVGAQL-NP 505

Query:    67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA 122
               Q GF+PLHLA QN HT+ V +L++   + V  + ++G T LH+    G V ++   LA
Sbjct:   506 VTQDGFTPLHLASQNGHTEAVAQLLEAKAD-VHAKDKQGRTALHWAAEQGEVAIIQSLLA 564

Query:   123 A 123
             A
Sbjct:   565 A 565

GO:0005622 "intracellular" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT4G10720 ankyrin repeat family protein; ankyrin repeat family protein; FUNCTIONS IN- protein binding; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Ankyrin (InterPro-IPR002110); BEST Arabidopsis thaliana protein match is- ankyrin repeat family protein (TAIR-AT5G54620.1); Has 18093 Blast hits to 8637 proteins in 352 species- Archae - 14; Bacteria - 895; Metazoa - 10619; Fungi - 754; Plants - 1144; Viruses - 52; Other Eukaryotes - 4615 (source- NCBI BLink). (445 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.9 bits (148), Expect = 7e-13
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           LAA  G+++ +  L+ E+   ++  D      TPLH+AA  GH+     ++         
Sbjct: 13  LAASNGHLEVVKLLL-ENGADVNAKDN--DGRTPLHLAAKNGHLEIVKLLLEKGAD-VNA 68

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFL 121
           +++ G +PLHLA +N +  +V  L+    + V  + ++G TPLH     G+++++   L
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.5 bits (147), Expect = 1e-12
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLH+AAS GH+     ++         ++  G +PLHLA +N H ++V  L++   + V
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-V 66

Query: 99  RVQGREGVTPLHY----GNVDLLYKFL 121
             + ++G TPLH     GN+D++   L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLL 93

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 6  ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDT--PLHIAASMGHVNFALEIMRLKPSF 63
           LAA+ GN++ +         LL++   V   DT   LH+AA  G++     ++      
Sbjct: 2  HLAAKNGNLELVK-------LLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV 54

Query: 64 ARKQNQYGFSPLHLALQNSHTQMVLRLID 92
             +++ G + LHLA +N + ++V  L++
Sbjct: 55 -NAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 41  LHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRV 100
           LH+AA  G++     ++               + LHLA +N + ++V  L++   + V  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGAD-VNA 56

Query: 101 QGREGVTPLHY----GNVDLLYKFL 121
           + ++G T LH     GN++++ K L
Sbjct: 57  KDKDGNTALHLAARNGNLEIV-KLL 80

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA 122
           +++ G +PLHLA  N H ++V  L++   + V  +  +G TPLH     G+++++   L 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 123 ACP 125
              
Sbjct: 62  KGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           T LH AA  G +   ++ +  K     + ++ G + LH+A +N + +++  L+
Sbjct: 2  RTALHKAAISGRLE-LVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.89
KOG0508	615	consensus Ankyrin repeat protein [General function	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02798	489	ankyrin-like protein; Provisional	99.88
PHA02798	489	ankyrin-like protein; Provisional	99.88
PHA02876	682	ankyrin repeat protein; Provisional	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
KOG0510	929	consensus Ankyrin repeat protein [General function	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
PHA02989	494	ankyrin repeat protein; Provisional	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
PHA02795	437	ankyrin-like protein; Provisional	99.81
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.79
PHA02917	661	ankyrin-like protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
PHA02730	672	ankyrin-like protein; Provisional	99.79
PHA02730	672	ankyrin-like protein; Provisional	99.77
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.68
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.68
PHA02792	631	ankyrin-like protein; Provisional	99.66
PHA02792	631	ankyrin-like protein; Provisional	99.65
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.64
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.62
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
KOG0514	452	consensus Ankyrin repeat protein [General function	99.61
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.6
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.57
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.34
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.34
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.33
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.16
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.1
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.02
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.0
PF13606	30	Ank_3: Ankyrin repeat	98.99
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.96
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.95
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.93
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.81
PF13606	30	Ank_3: Ankyrin repeat	98.79
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.79
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.75
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.71
KOG0522	560	consensus Ankyrin repeat protein [General function	98.67
KOG0511	516	consensus Ankyrin repeat protein [General function	98.54
KOG0511	516	consensus Ankyrin repeat protein [General function	98.51
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.35
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.14
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.88
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.69
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.69
KOG2384	223	consensus Major histocompatibility complex protein	97.64
KOG2384	223	consensus Major histocompatibility complex protein	97.46
KOG2505	591	consensus Ankyrin repeat protein [General function	97.34
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.31
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.14
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.07
KOG2505	591	consensus Ankyrin repeat protein [General function	96.97
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.88
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.33
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.64
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.1
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.91
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	84.06
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	81.13

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1e-32  Score=165.22  Aligned_cols=135  Identities=23%  Similarity=0.283  Sum_probs=119.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHh-CCCccccCCCCCCcHHHHHHhc
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL-KPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      ||||+||..|+.+++++|+++-.-..+..|.  .||||||+|+..|+.++++.|+.+ ++++ +.....|.||||+|+..
T Consensus        40 t~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd--aGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK  116 (226)
T KOG4412|consen   40 TPLHWACSFGHVEIVYFLLSQPNVKPDDKDD--AGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGK  116 (226)
T ss_pred             ceeeeeeecCchhHHHHHHhcCCCCCCCccc--cCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcC
Confidence            7899999999999999999754333344554  399999999999999999999999 6666 78899999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFS  142 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  142 (151)
                      |++++..+|++.|+. ++++|..|.||||.    |..+++++|+. .|+.++..|++|+||||.|
T Consensus       117 ~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~-~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  117 GRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLIS-QGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             ChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHh-cCCCCCcccccCccHHHHH
Confidence            999999999999998 99999999999998    99999966665 5699999999999999987

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-29  Score=152.26  Aligned_cols=133  Identities=24%  Similarity=0.256  Sum_probs=119.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHh-ChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            3 HYVILAAQAGNVDALYELIWE-DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      ||||.|+..|+.++|+.|+.+ +++++..+.   .|.|+||+|+..|+.+++++|++.|+.+ ..+|..|.||||.|+.-
T Consensus        74 tPlhia~s~g~~evVk~Ll~r~~advna~tn---~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen   74 TPLHIAASNGNDEVVKELLNRSGADVNATTN---GGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             chhhhhhhcCcHHHHHHHhcCCCCCcceecC---CCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhc
Confidence            799999999999999999999 777744433   3999999999999999999999999777 78899999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFS  142 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  142 (151)
                      |+++++++|+..++. ++..|.+|+||||.    ++.+.. .+|.+.|++++..|+.| |++-.+
T Consensus       150 Gklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a-~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  150 GKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVA-VLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             cchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHH-HHHHHhccceeeccccC-chHHHH
Confidence            999999999999988 99999999999997    888877 55666789999999988 887654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=5.3e-27  Score=163.08  Aligned_cols=135  Identities=26%  Similarity=0.327  Sum_probs=65.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~   83 (151)
                      +||+|+.+++.+++|+|+++|+++ +.... ..+.||||||++.|+..+++.|++.|+++ ..+|..|.+|+|.|+.+++
T Consensus        81 lLHWAAiNNrl~v~r~li~~gadv-n~~gG-~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~  157 (600)
T KOG0509|consen   81 LLHWAAINNRLDVARYLISHGADV-NAIGG-VLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGH  157 (600)
T ss_pred             ceeHHHHcCcHHHHHHHHHcCCCc-cccCC-CCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCc
Confidence            455555555555555555555554 22221 12445555555555555555555555555 4445555555555555555


Q ss_pred             HHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCccccc-ccCCCcccccc
Q 048410           84 TQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVT-IYFPILLPFSS  143 (151)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~  143 (151)
                      .-.+.+++..+++ ++.+|.+|+|||+.    +....+..||.. ++.+...| ..|.||||+|+
T Consensus       158 ~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f-~a~~~~~d~~~g~TpLHwa~  220 (600)
T KOG0509|consen  158 TALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKF-GASLLLTDDNHGNTPLHWAV  220 (600)
T ss_pred             hHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHh-cccccccccccCCchHHHHH
Confidence            5555555555544 55555555555554    333323233332 33333333 45555555544

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.9e-26  Score=152.37  Aligned_cols=113  Identities=19%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.++++.|++.|+.+ +..+    +.||||+|+..|+.++++.|++.|++. +.+|..|.||||+|+..|
T Consensus        32 TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~d----~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g  105 (284)
T PHA02791         32 SALYYAIADNNVRLVCTLLNAGALK-NLLE----NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSG  105 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHCcCCC-cCCC----CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            4555555555555555555555433 1111    345555555555555555555554444 334445555555555555


Q ss_pred             CHHHHHHHHhhccccccccCCCCC-Ccccc----cCHHHHHHHHH
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGV-TPLHY----GNVDLLYKFLA  122 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~-t~l~~----~~~~~~~~ll~  122 (151)
                      +.+++++|++.|++ ++.++..|+ |||+.    ++.++++.|+.
T Consensus       106 ~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~  149 (284)
T PHA02791        106 NMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS  149 (284)
T ss_pred             CHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHh
Confidence            55555555555544 444444442 44443    44444444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.5e-26  Score=160.98  Aligned_cols=139  Identities=19%  Similarity=0.186  Sum_probs=123.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|+++ +..+.  .|.||||.|+..++.+++++|++.|++. +.+|..|.||||+|+..
T Consensus       169 ~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~--~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~  244 (477)
T PHA02878        169 NTALHYATENKDQRLTELLLSYGANV-NIPDK--TNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGY  244 (477)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCC--CCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHh
Confidence            58999999999999999999999987 44443  4999999999999999999999999988 67799999999999975


Q ss_pred             -CCHHHHHHHHhhccccccccCC-CCCCcccc--cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           82 -SHTQMVLRLIDVDRNLVRVQGR-EGVTPLHY--GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        82 -~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~--~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                       ++.+++++|++.|++ ++.++. .|.||||.  ++.+++ .+|...|++++..+..|.||||+|++..
T Consensus       245 ~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A~~~~~~v-~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        245 CKDYDILKLLLEHGVD-VNAKSYILGLTALHSSIKSERKL-KLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHHccCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence             789999999999999 888876 79999999  888888 4555579999999999999999998743

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8.2e-26  Score=157.64  Aligned_cols=139  Identities=19%  Similarity=0.161  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|++.|+.+++++|++.|+.+ ...+.  .+.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|
T Consensus        37 tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~  113 (413)
T PHA02875         37 SPIKLAMKFRDSEAIKLLMKHGAIP-DVKYP--DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK  113 (413)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCc-cccCC--CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhC
Confidence            4555555555555555555555443 11111  13444444444444444444444444332333445666666666666


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      +.+++++|++.|++ ++..+..|.||||.    ++.++++.|+. .|++++.+|..|.||||+|+.++
T Consensus       114 ~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        114 KLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             CHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcC
Confidence            66666666666666 66666666666665    56666644443 45566666666666666666543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=2.6e-26  Score=159.70  Aligned_cols=140  Identities=23%  Similarity=0.252  Sum_probs=123.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHh-ChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            3 HYVILAAQAGNVDALYELIWE-DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      ..++.|+.+|+++.|+.+++. +..+ ...|.  .|.|+||||+..++.+++++|+++|++++..-..-+.||||||+++
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~--~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESV-NNPDR--EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCC-CCCCc--CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            457889999999999999999 5554 44454  3999999999999999999999999998444347788999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+..++..|++.|++ ++.+|.+|.+|+|.    ++...+.++|.. +++++.+|.+|+||||+|+..+.
T Consensus       123 G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~-~~d~d~~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  123 GHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSK-GADIDLRDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             CcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHh-cccCCCcCCCCCCHHHHHHHhcc
Confidence            999999999999999 99999999999998    889988777776 59999999999999999986553

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=148.06  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=115.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCC-CcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYG-FSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~t~L~~a~~   80 (151)
                      .||||.|+..|+.++++.|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.+++. +..+..| .||||+|+.
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~--~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~  137 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDD-SQFDD--KGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVM  137 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHH
Confidence            48999999999999999999999876 44443  4899999999999999999999999887 4556666 489999999


Q ss_pred             cCCHHHHHHHHhhccccccccC-CCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCc-cccccccCC
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQG-REGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPIL-LPFSSKFSP  147 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~-l~~a~~~~~  147 (151)
                      .|+.+++++|++.++. .  .+ ..|.||||+    ++.++++.|+. .|++++.++..|.|| ||+|++..+
T Consensus       138 ~g~~eivk~LL~~~~~-~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        138 LNDVSIVSYFLSEIPS-T--FDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             cCCHHHHHHHHhcCCc-c--cccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCC
Confidence            9999999999988665 2  23 358999998    99999966655 688999999999887 999987764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.2e-25  Score=142.27  Aligned_cols=138  Identities=14%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             CHHHHHHHHcC--CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhc---CCHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            2 SHYVILAAQAG--NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASM---GHVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      .||||.|+..+  +.+++++|++.|+++....+.  .|.||||+|+..   ++.+++++|++.|+++ +..|..|.||||
T Consensus        52 ~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~--~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh  128 (209)
T PHA02859         52 ETPIFSCLEKDKVNVEILKFLIENGADVNFKTRD--NNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLH  128 (209)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCC--CCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence            35666666533  566666666666665322211  256666665542   2566666666666665 455666666666


Q ss_pred             HHHh--cCCHHHHHHHHhhccccccccCCCCCCcccc-----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           77 LALQ--NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY-----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        77 ~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~-----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      .|+.  .++.+++++|++.|++ ++.++..|.||+|.     ++.++++.| ...|++++.+|..|.||+++|.-
T Consensus       129 ~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~L-l~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        129 MYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFL-TSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHH-HHcCCCCCCCCCCCCCHHHHHhh
Confidence            6654  2456666666666666 66666666666663     455666333 33466666666666666666553

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.2e-25  Score=157.64  Aligned_cols=137  Identities=20%  Similarity=0.202  Sum_probs=106.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|+++ +..+.  .|.||||+|+..++.+++++|++.|++. +..+..|.||||+|+..
T Consensus       125 ~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~--~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        125 KTFLHYAIKKGDLESIKMLFEYGADV-NIEDD--NGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEY  200 (434)
T ss_pred             ccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCC--CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence            48999999999999999999999886 44443  4899999999999999999999999877 66788999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc---cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY---GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      |+.+++++|++.|+. +..++..|.|||+.   ...+.+.+|+  .|++++.++..|.||||+|+++
T Consensus       201 g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~~~i~~Ll--~~~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        201 GDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNRSAIELLI--NNASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             CCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCChHHHHHHH--cCCCCCCcCCCCCCHHHHHHhc
Confidence            999999999999887 66666666666665   3333443333  2445555555555555555543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=159.53  Aligned_cols=137  Identities=20%  Similarity=0.196  Sum_probs=110.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHH-------------------------------
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVN-------------------------------   51 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~-------------------------------   51 (151)
                      +|||.|++.|+.++|++|++.|+++ +..+.  .|.||||+|+..|+.+                               
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~--~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNV-NQPDH--RDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCC-CCCCC--CCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            6899999999999999999999876 44443  3899999998776544                               


Q ss_pred             ---------------------------------HHHHHHHhCCCccccCCCC-CCcHHHHHHhcCCHHHHHHHHhhcccc
Q 048410           52 ---------------------------------FALEIMRLKPSFARKQNQY-GFSPLHLALQNSHTQMVLRLIDVDRNL   97 (151)
Q Consensus        52 ---------------------------------~~~~ll~~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~~ll~~~~~~   97 (151)
                                                       ++++|++.|+++ +..+.. |.||||+|+..|+.+++++|++.|++ 
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-  193 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGAN-  193 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-
Confidence                                             344444555554 445666 99999999999999999999999998 


Q ss_pred             ccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           98 VRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        98 ~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ++..+..|.||||.    ++.++++.|+ ..|++++.+|..|.||||+|+.+
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~ga~in~~d~~g~TpLh~A~~~  244 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILL-ENGASTDARDKCGNTPLHISVGY  244 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHh
Confidence            88889999999998    8888885555 46889999999999999998864

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4.7e-25  Score=153.86  Aligned_cols=140  Identities=22%  Similarity=0.210  Sum_probs=122.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .+|||.|+..|+.++++.|++.++......+.  .|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~  145 (413)
T PHA02875         69 ESELHDAVEEGDVKAVEELLDLGKFADDVFYK--DGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMM  145 (413)
T ss_pred             ccHHHHHHHCCCHHHHHHHHHcCCcccccccC--CCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHc
Confidence            47999999999999999999999876444443  3899999999999999999999999988 67788999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccC-CCccccccccC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYF-PILLPFSSKFS  146 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g-~t~l~~a~~~~  146 (151)
                      |+.+++++|++.|+. ++.++..|.|||++    ++.++++.|+. .|++++..+..| .||+|+|++..
T Consensus       146 ~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        146 GDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENN  213 (413)
T ss_pred             CCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcC
Confidence            999999999999998 89999999999998    88999966555 688999888877 47888887754

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=8e-25  Score=153.50  Aligned_cols=138  Identities=15%  Similarity=0.152  Sum_probs=76.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCc-------------------
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF-------------------   63 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-------------------   63 (151)
                      ||||.|++.|+.++|++|++.|+++. ..+.  .|.|||+.|+..|+.+++++|++.|++.                   
T Consensus        37 tpL~~A~~~g~~~iv~~Ll~~Ga~~n-~~~~--~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         37 TPLIDAIRSGDAKIVELFIKHGADIN-HINT--KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC-CCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            66777777777777777777766542 2221  2555566555555555555555544321                   


Q ss_pred             ---cccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCC
Q 048410           64 ---ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFP  136 (151)
Q Consensus        64 ---~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~  136 (151)
                         .+..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||.    ++.++++.|+. .|++.+..+..|.
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~~~~g~  191 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGE  191 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCC
Confidence               123344555555555555555555555555555 55555555555555    55555533333 3455555555555


Q ss_pred             Ccccccccc
Q 048410          137 ILLPFSSKF  145 (151)
Q Consensus       137 t~l~~a~~~  145 (151)
                      ||||+|+++
T Consensus       192 tpL~~A~~~  200 (434)
T PHA02874        192 SPLHNAAEY  200 (434)
T ss_pred             CHHHHHHHc
Confidence            555555544

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=7.3e-25  Score=153.54  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=95.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC--CHHHHHHHHHhCCCccccCCCCCCcHHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG--HVNFALEIMRLKPSFARKQNQYGFSPLHLAL   79 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~   79 (151)
                      .||||.|+..|+.++++.|+++|+++ +.++.  .|.||||+|+..+  ..+++++|++.|++.....+..|.|||+ ++
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~--~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa  148 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHGADP-NACDK--QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC  148 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCC--CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH
Confidence            47899999999999999999998886 44453  4889999887765  4778888888887774345667777775 45


Q ss_pred             hcCCHHHHHHHHhhccccccccCCCCCCcccc------cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           80 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY------GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~------~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ..++.+++++|++.|++ ++.++..|.||||.      ++.+++++|+ ..|++++.+|..|.||||+|++.
T Consensus       149 ~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll-~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        149 TDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMM-KLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             HCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHc
Confidence            55666666666666666 66666666666664      3345553333 34666666666666666666654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2e-24  Score=137.86  Aligned_cols=133  Identities=13%  Similarity=0.159  Sum_probs=112.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC--CHHHHHHHHHhCCCccccCC-CCCCcHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG--HVNFALEIMRLKPSFARKQN-QYGFSPLHLA   78 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a   78 (151)
                      .+||+.|+..|+.+.|+.|++..    +..+.  .|.||||+|+..+  +.+++++|++.|+++ +..+ ..|.||||+|
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~~----n~~~~--~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a   94 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKFV----NDCND--LYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHY   94 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHhh----hccCc--cCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHH
Confidence            57999999999999999999753    33332  4899999999854  899999999999988 4554 5899999998


Q ss_pred             Hhc---CCHHHHHHHHhhccccccccCCCCCCcccc------cCHHHHHHHHHhCCCCcccccccCCCcccccc
Q 048410           79 LQN---SHTQMVLRLIDVDRNLVRVQGREGVTPLHY------GNVDLLYKFLAACPESILQVTIYFPILLPFSS  143 (151)
Q Consensus        79 ~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~------~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  143 (151)
                      +..   ++.+++++|++.|++ ++.++..|.||||.      ++.++++.|+ ..|++++.+|..|.||+|.++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li-~~gadin~~d~~g~t~Lh~~a  166 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLI-DSGVSFLNKDFDNNNILYSYI  166 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHH-HcCCCcccccCCCCcHHHHHH
Confidence            764   478999999999999 99999999999996      4688885555 678999999999999999643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=6.3e-24  Score=150.70  Aligned_cols=138  Identities=21%  Similarity=0.260  Sum_probs=87.4

Q ss_pred             HHHHHHHHcC--CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCC------CcH
Q 048410            3 HYVILAAQAG--NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYG------FSP   74 (151)
Q Consensus         3 ~~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~------~t~   74 (151)
                      ||||.|+..|  +.++++.|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.|+++ +..+..|      .||
T Consensus       143 t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~--~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~  218 (480)
T PHA03100        143 NLLHLYLESNKIDLKILKLLIDKGVDI-NAKNR--YGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETP  218 (480)
T ss_pred             cHHHHHHHcCCChHHHHHHHHHCCCCc-ccccC--CCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhH
Confidence            5666666666  666666666666654 33332  2666666666666666666666666655 3344445      566


Q ss_pred             HHHHHhcCC--HHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           75 LHLALQNSH--TQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        75 L~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      ||.|+..++  .+++++|++.|++ ++.++..|.|||+.    ++.+++++|+. .|++++.++..|.||++.|++..
T Consensus       219 l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        219 LHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             HHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhC
Confidence            666666666  6667777766666 66677777777776    66777755444 45677777777777777776543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.6e-24  Score=150.95  Aligned_cols=140  Identities=19%  Similarity=0.231  Sum_probs=123.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHH-----HHhcCCHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHI-----AASMGHVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~-----a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      .+|||.|++.|+.++|++|++.|.++ +..+.  .+.||+|+     |+..++.++++.|++.|++. +..+..|.||||
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~-~~~~~--~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~  111 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNGADI-NSSTK--NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLL  111 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcCCCC-CCccc--cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhh
Confidence            37999999999999999999999887 33332  37899999     99999999999999999988 777899999999


Q ss_pred             HHH--hcCCHHHHHHHHhhccccccccCCCCCCcccc----c--CHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           77 LAL--QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G--NVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        77 ~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~--~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +|+  ..|+.+++++|++.|++ ++..+..|.|||+.    +  +.++++.|+. .|++++.++..|.||||+|++.++
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~~g~tpL~~A~~~~~  188 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNRYGYTPLHIAVEKGN  188 (480)
T ss_pred             HHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccCCCCCHHHHHHHhCC
Confidence            999  99999999999999998 89999999999998    6  7888855554 688999999999999999988753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=144.64  Aligned_cols=139  Identities=11%  Similarity=0.002  Sum_probs=122.1

Q ss_pred             CHHHHHHHH--cCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCC-----CCCCcH
Q 048410            2 SHYVILAAQ--AGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN-----QYGFSP   74 (151)
Q Consensus         2 ~~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~t~   74 (151)
                      +|+||.++.  .|+.++|++|+++|+++ ...+    +.||+|+|+..++.+++++|++.|++..+..+     ..+.++
T Consensus       117 ~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~~~----~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~  191 (437)
T PHA02795        117 QDLLLYYLSNAYVEIDIVDFMVDHGAVI-YKIE----CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR  191 (437)
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHCCCCC-CCCC----CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence            689999999  89999999999999997 3333    57999999999999999999999975433321     347789


Q ss_pred             HHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           75 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        75 L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +|.++..++.+++++|++.|++ ++.++..|.|||++    ++.++++.|+ ..|++++.++..|.||||+|+..+.
T Consensus       192 l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL-~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        192 GFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLL-ENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             hHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999 99999999999998    9999996666 5689999999999999999998764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=9.6e-24  Score=150.53  Aligned_cols=144  Identities=24%  Similarity=0.282  Sum_probs=119.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhh------------cCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCC
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQI------------DRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQ   69 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~------------~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~   69 (151)
                      ++|||.|+..|++++++.+++.+......+            +.+..|.||||+|+..|++++++.|+..|++. +.++.
T Consensus       226 ~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~  304 (929)
T KOG0510|consen  226 ATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNK  304 (929)
T ss_pred             CcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCC
Confidence            589999999999999999999865432211            22245899999999999999999999999998 67789


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHh-hccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcc---cccccCCCcccc
Q 048410           70 YGFSPLHLALQNSHTQMVLRLID-VDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESIL---QVTIYFPILLPF  141 (151)
Q Consensus        70 ~~~t~L~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~---~~~~~g~t~l~~  141 (151)
                      ++.||||.|+++|++.+++.|++ .+-...+..|..|.||||+    |+..+++.|+ ..|+...   ..|.+|.|+||+
T Consensus       305 d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl-~~GA~~~~~~e~D~dg~TaLH~  383 (929)
T KOG0510|consen  305 DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLL-NKGALFLNMSEADSDGNTALHL  383 (929)
T ss_pred             CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHH-hcChhhhcccccccCCchhhhH
Confidence            99999999999999999999998 4544467778889999998    8888885554 4566666   458999999999


Q ss_pred             ccccCC
Q 048410          142 SSKFSP  147 (151)
Q Consensus       142 a~~~~~  147 (151)
                      |++++.
T Consensus       384 Aa~~g~  389 (929)
T KOG0510|consen  384 AAKYGN  389 (929)
T ss_pred             HHHhcc
Confidence            998864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=3.1e-24  Score=145.41  Aligned_cols=136  Identities=21%  Similarity=0.217  Sum_probs=119.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      +||-.|+-.||+++||.|+.+|+.++..+..   ..|||..||..|+.+++|+|++.++++ +..++.|.|+|+.||..|
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~tT~T---NStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVNDTTRT---NSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKG  161 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCcccccccc---CCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccC
Confidence            5777788899999999999999887544432   569999999999999999999999998 788999999999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      |.+++++|++.|++ ++.++..|.|+||.    |+.++++.|+ ..|+.++. |.+|.|||..|+.-
T Consensus       162 h~~I~qyLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll-~~ga~i~~-d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  162 HVDIAQYLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLL-KHGAKIDV-DGHGMTPLLLAAVT  225 (615)
T ss_pred             chHHHHHHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHH-hCCceeee-cCCCCchHHHHhhh
Confidence            99999999999999 99999999999998    8999995555 46777755 77899999988753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=3.3e-23  Score=150.85  Aligned_cols=137  Identities=15%  Similarity=0.118  Sum_probs=115.7

Q ss_pred             CHHHHHHHH--cCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCC--HHHHHHHHHhCCCccccCCCCCCcHHHH
Q 048410            2 SHYVILAAQ--AGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGH--VNFALEIMRLKPSFARKQNQYGFSPLHL   77 (151)
Q Consensus         2 ~~~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~t~L~~   77 (151)
                      .||||.|+.  +++.+++++|++.|+++ +..+.  .|.||||+|+..|+  .+++++|++.|+++ +.++..|.||||+
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~--~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~  253 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNN--HLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMT  253 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            479998764  46789999999999987 44443  49999999999985  58999999999988 6779999999996


Q ss_pred             H-------------------------------------HhcCCHHHHHHHHhhccccccccCCCCCCcccc------cCH
Q 048410           78 A-------------------------------------LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY------GNV  114 (151)
Q Consensus        78 a-------------------------------------~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~------~~~  114 (151)
                      |                                     +..|+.+++++|++.|++ ++.++..|.||||.      ++.
T Consensus       254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNIST  332 (764)
T ss_pred             HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCc
Confidence            5                                     345778899999999999 99999999999995      467


Q ss_pred             HHHHHHHHhCCCCcccccccCCCccccccc
Q 048410          115 DLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus       115 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      ++++.|+ ..|++++.+|..|.||||+|+.
T Consensus       333 eIVklLL-e~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        333 DIIKLLH-EYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             hHHHHHH-HcCCCCccCCCCCCCHHHHHHH
Confidence            8886665 5689999999999999998754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=9.5e-23  Score=152.12  Aligned_cols=138  Identities=20%  Similarity=0.145  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         1 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      |.++|+.||..|+.+.++.|++.|.++ +..+.  .|.||||+|+..|+.++++.|++.|+++ +.+|..|.||||+|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~--~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~  600 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDP-DIGDS--KGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAIS  600 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC--CCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHH
Confidence            357899999999999999999999987 55553  4999999999999999999999999887 6779999999999888


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      .|+.+++++|+..++. .+  ...+.++|+.    ++.++++.|+. .|++++.+|..|.||||+|++.+
T Consensus       601 ~g~~~iv~~L~~~~~~-~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        601 AKHHKIFRILYHFASI-SD--PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             hCCHHHHHHHHhcCcc-cC--cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCC
Confidence            8888888877765544 22  2335566665    66777744443 46677777777777777776543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=1e-22  Score=144.25  Aligned_cols=137  Identities=21%  Similarity=0.251  Sum_probs=89.6

Q ss_pred             CHHHHHHHHcC---CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC-CHHHHHHHHHhCCCccccCCCCCCcHHHH
Q 048410            2 SHYVILAAQAG---NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG-HVNFALEIMRLKPSFARKQNQYGFSPLHL   77 (151)
Q Consensus         2 ~~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~t~L~~   77 (151)
                      .||||.|+..|   +.++++.|++.|+++ +..+.  .|.||||+|+..+ ..+++++|++.|+++ +..+..|.||||+
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~--~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~  123 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPER--CGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHV  123 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCC--CCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            46777777777   777777777777776 33332  3777777777777 477777777777766 5567777777777


Q ss_pred             HH--hcCCHHHHHHHHhhccccccccCCCCCCcccc------cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           78 AL--QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY------GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        78 a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~------~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      |+  ..++.+++++|++.|++ ++..+..|.|||+.      ...++++.|+. .|++....+..|.||||.++.
T Consensus       124 a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~-~g~~~~~~d~~g~t~Lh~~~~  196 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLID-AGADVYAVDDRFRSLLHHHLQ  196 (471)
T ss_pred             HhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHH
Confidence            77  34566777777777777 77777777777764      24555533333 344554445555555555443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=3.5e-23  Score=140.38  Aligned_cols=140  Identities=21%  Similarity=0.226  Sum_probs=118.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhC-hhhhhhh-----cC-CCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHH
Q 048410            3 HYVILAAQAGNVDALYELIWED-AYLLDQI-----DR-VPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPL   75 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~-~~~~~~~-----~~-~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L   75 (151)
                      |||..|+++|+.++|++|+++- .++ +..     |. .-.|.+||--|+..||++++|.|+..++++ |....-+.|||
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~-e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPL  121 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASP-EQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPL  121 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCc-cCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccH
Confidence            6889999999999999999963 221 111     10 012667877778889999999999999887 67677788999


Q ss_pred             HHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           76 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        76 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      ..||.-|+++++++|++.|++ ++..|+.|.|+|++    |+.+|+++|++. |++++.++..|.|+||.++.-+
T Consensus       122 raACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~-gADvn~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  122 RAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQ-GADVNAKSYKGNTALHDCAESG  194 (615)
T ss_pred             HHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHh-CCCcchhcccCchHHHhhhhcc
Confidence            999999999999999999999 99999999999998    999999777764 8999999999999999988654

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=2.4e-22  Score=140.94  Aligned_cols=137  Identities=13%  Similarity=0.076  Sum_probs=116.4

Q ss_pred             HHHHHHH--HcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            3 HYVILAA--QAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         3 ~~l~~a~--~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      ++||.++  ..++.++|++|++.|+++ +.++.  .|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+.
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~--~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~  114 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSP-NETDD--DGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSG  114 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCC-CccCC--CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHH
Confidence            5677665  445778999999999987 45553  4999999999999999999999999888 6789999999999987


Q ss_pred             cC--CHHHHHHHHhhccccccc-cCCCCCCcccc---cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           81 NS--HTQMVLRLIDVDRNLVRV-QGREGVTPLHY---GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        81 ~~--~~~~~~~ll~~~~~~~~~-~~~~~~t~l~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      .+  ..+++++|++.|++ ++. .+..|.|||+.   ++.++++.|+ ..|++++.+|..|.||||+|+..
T Consensus       115 ~~~~~~e~v~lLl~~Gad-in~~~d~~g~tpL~aa~~~~~~vv~~Ll-~~gad~~~~d~~G~t~Lh~A~~~  183 (446)
T PHA02946        115 TDDEVIERINLLVQYGAK-INNSVDEEGCGPLLACTDPSERVFKKIM-SIGFEARIVDKFGKNHIHRHLMS  183 (446)
T ss_pred             cCCchHHHHHHHHHcCCC-cccccCCCCCcHHHHHHCCChHHHHHHH-hccccccccCCCCCCHHHHHHHh
Confidence            65  47899999999999 774 68899999987   8888886655 46899999999999999997653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=148.97  Aligned_cols=136  Identities=20%  Similarity=0.302  Sum_probs=70.2

Q ss_pred             HHHHHHHHcC-CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhc-CCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            3 HYVILAAQAG-NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASM-GHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         3 ~~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      ||||.|+..| +.+.++.|+..|.++ +..+.  .|.||||+|+.. +..++++.|++.|+++ +.+|..|.||||+|+.
T Consensus       309 TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~--~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        309 TPLYLMAKNGYDTENIRTLIMLGADV-NAADR--LYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAV  384 (682)
T ss_pred             CHHHHHHHhCCCHHHHHHHHHcCCCC-CCccc--CCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHH
Confidence            4555555555 344555555554443 22221  244555555443 2445555555555554 4445566666666666


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cC-HHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GN-VDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~-~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      .++.+++++|++.|++ ++..+..|.||||+    ++ ..++ .+|...|++++.+|..|.||||+|++
T Consensus       385 ~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~v-k~Ll~~gadin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        385 RNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSV-KTLIDRGANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             cCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHH-HHHHhCCCCCCcCCCCCChHHHHHHH
Confidence            6666666666665555 55555555555554    22 2223 33334455555555666666666554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=1.3e-22  Score=147.80  Aligned_cols=134  Identities=15%  Similarity=0.084  Sum_probs=113.3

Q ss_pred             CHHHHHHHHcCC--HHHHHHHHHhChhhhhhhcCCCCCCchHHHH-----------------------------------
Q 048410            2 SHYVILAAQAGN--VDALYELIWEDAYLLDQIDRVPFVDTPLHIA-----------------------------------   44 (151)
Q Consensus         2 ~~~l~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a-----------------------------------   44 (151)
                      .||||.|++.|+  .++|+.|++.|+++ +.++.  .|.||||+|                                   
T Consensus       213 ~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~--~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i  289 (764)
T PHA02716        213 ITPLHTYLITGNVCASVIKKIIELGGDM-DMKCV--NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI  289 (764)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence            589999999995  48999999999987 44553  499999975                                   


Q ss_pred             --HhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh--cCCHHHHHHHHhhccccccccCCCCCCcccc---------
Q 048410           45 --ASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ--NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY---------  111 (151)
Q Consensus        45 --~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~---------  111 (151)
                        +..|+.++++.|++.|++. +.+|..|+||||+|+.  .++.+++++|++.|++ ++.++..|.||||.         
T Consensus       290 ~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~  367 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVN  367 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhc
Confidence              3446788899999999887 6779999999999764  4688999999999999 99999999999985         


Q ss_pred             ---------cCHHHHHHHHHhCCCCcccccccCCCcccc
Q 048410          112 ---------GNVDLLYKFLAACPESILQVTIYFPILLPF  141 (151)
Q Consensus       112 ---------~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  141 (151)
                               ++.++++.|+ ..|++++.++..|.||||.
T Consensus       368 ~ld~~~~~~~~~eVVklLL-~~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        368 ILDPETDNDIRLDVIQCLI-SLGADITAVNCLGYTPLTS  405 (764)
T ss_pred             cccccccccChHHHHHHHH-HCCCCCCCcCCCCCChHHH
Confidence                     2568886555 5689999999999999994

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=1.2e-22  Score=121.47  Aligned_cols=138  Identities=22%  Similarity=0.243  Sum_probs=125.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~   83 (151)
                      .+.+|+..|....|+.|++..++.++.++.+  |+||||-|+..|+.++++.|+..|++. ..+...|+||||.||.-.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D--~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDED--EYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccc--cccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccc
Confidence            4678999999999999999999988888865  999999999999999999999999998 6678899999999999999


Q ss_pred             HHHHHHHHhhccccccccCCCCCCcccc-----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           84 TQMVLRLIDVDRNLVRVQGREGVTPLHY-----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~-----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      .+++..|+.+|++ +++...-..||||+     .....+.+|+...+.+...++..+.||+..|.|-
T Consensus       143 ~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  143 FEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            9999999999999 99999889999998     4455677888899999999999999999998774

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.8e-22  Score=142.03  Aligned_cols=139  Identities=17%  Similarity=0.149  Sum_probs=100.5

Q ss_pred             CHHHHHHHHcC-CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHH--hcCCHHHHHHHHHhCCCccccCCCCCCcHHHHH
Q 048410            2 SHYVILAAQAG-NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAA--SMGHVNFALEIMRLKPSFARKQNQYGFSPLHLA   78 (151)
Q Consensus         2 ~~~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a   78 (151)
                      .||||.|+..| ..++++.|++.|+++ +..+.  .|.||||+|+  ..++.+++++|++.|+++ +..+..|.||||++
T Consensus        84 ~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~--~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a  159 (471)
T PHA03095         84 FTPLHLYLYNATTLDVIKLLIKAGADV-NAKDK--VGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVL  159 (471)
T ss_pred             CCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence            47999999999 589999999999886 44443  3889999998  445788899999988887 56688888888888


Q ss_pred             HhcC--CHHHHHHHHhhccccccccCCCCCCcccc------cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           79 LQNS--HTQMVLRLIDVDRNLVRVQGREGVTPLHY------GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        79 ~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~l~~------~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      +..+  +.+++++|++.|++ +...+..|.||||.      +..++++.|+ ..|++.+.+|..|.||||+|+.++
T Consensus       160 ~~~~~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll-~~g~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        160 LKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELI-RAGCDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             HHcCCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHH-HcCCCCcccCCCCCCHHHHHHhcC
Confidence            7665  56788888888877 66667778888775      4455553333 345555555555555555555443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=9.9e-22  Score=121.32  Aligned_cols=129  Identities=12%  Similarity=0.076  Sum_probs=105.4

Q ss_pred             HHHHHHHHcCCH----HHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHH---HHHHHHHhCCCccccCC-CCCCcH
Q 048410            3 HYVILAAQAGNV----DALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVN---FALEIMRLKPSFARKQN-QYGFSP   74 (151)
Q Consensus         3 ~~l~~a~~~g~~----~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~-~~~~t~   74 (151)
                      ++||.|++.|+.    +++++|++.+..+ +..+.  .|.||||+|+..++.+   ++++|++.|++. +.++ ..|.||
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~--~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~Tp   97 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDH--HGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTL   97 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCC--CCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcH
Confidence            578999999998    4555666777765 44443  3999999999998754   478999999887 6666 589999


Q ss_pred             HHHHHhcCCHHHHHHHHh-hccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCC
Q 048410           75 LHLALQNSHTQMVLRLID-VDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPI  137 (151)
Q Consensus        75 L~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t  137 (151)
                      ||+|+..++.+++++|+. .+++ ++.++..|.|||++    ++.++++.| ...|++++.++..|..
T Consensus        98 Lh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~L-l~~ga~~~~~~~~~~~  163 (166)
T PHA02743         98 LHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEIL-RANGAVCDDPLSIGLS  163 (166)
T ss_pred             HHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHH-HHcCCCCCCcccCCcc
Confidence            999999999999999995 6888 89999999999998    788888554 5578899888877653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=5.5e-22  Score=141.17  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=106.1

Q ss_pred             CHHHHHHHHc---CCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhc--CCHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            2 SHYVILAAQA---GNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASM--GHVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      .|||+.|+..   |+.+++++|++.|+++.+..+.  .|.||||+|+..  ++.++++.|++.|+++....+..|.||||
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~--~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~  186 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS--RGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMN  186 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC--CCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHH
Confidence            4788877654   6788899999998886334443  388999987654  57888999998888874335677889988


Q ss_pred             HHHhcC----CHHHHHHHHhhcccccc--------------------------------------ccCCCCCCcccc---
Q 048410           77 LALQNS----HTQMVLRLIDVDRNLVR--------------------------------------VQGREGVTPLHY---  111 (151)
Q Consensus        77 ~a~~~~----~~~~~~~ll~~~~~~~~--------------------------------------~~~~~~~t~l~~---  111 (151)
                      .+++.+    +.+++++|++.|++ ++                                      .+|..|.||||+   
T Consensus       187 ~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~  265 (494)
T PHA02989        187 IYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAK  265 (494)
T ss_pred             HHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Confidence            887653    78888888888775 43                                      344558888887   


Q ss_pred             -cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          112 -GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       112 -~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                       ++.++++.|+. .|++++.++..|.||||+|++...
T Consensus       266 ~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        266 VDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             hcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCC
Confidence             78888855554 578888888889999988887653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.88  E-value=7.4e-22  Score=140.38  Aligned_cols=140  Identities=16%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             HHHHHHHHcC---CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCC---HHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            3 HYVILAAQAG---NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGH---VNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         3 ~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      ||||.|+..|   +.+++++|++.|+++ +..+.  .|.||||+|+..++   .+++++|++.|++.....+..|.||||
T Consensus       111 TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~--~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh  187 (489)
T PHA02798        111 TPLYCLLSNGYINNLEILLFMIENGADT-TLLDK--DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH  187 (489)
T ss_pred             cHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCC--CCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHH
Confidence            5666666554   456666666666655 33332  26666666666655   666666666665552222345566666


Q ss_pred             HHHhc----CCHHHHHHHHhhccc--------------------------------------cccccCCCCCCcccc---
Q 048410           77 LALQN----SHTQMVLRLIDVDRN--------------------------------------LVRVQGREGVTPLHY---  111 (151)
Q Consensus        77 ~a~~~----~~~~~~~~ll~~~~~--------------------------------------~~~~~~~~~~t~l~~---  111 (151)
                      .++..    ++.+++++|++.|+.                                      +++.+|..|.|||+.   
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~  267 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVS  267 (489)
T ss_pred             HHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHH
Confidence            55443    245555555555432                                      023345567777776   


Q ss_pred             -cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410          112 -GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       112 -~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                       ++.+++++|+. .|++++.++..|.||||+|++..
T Consensus       268 ~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        268 HNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             cCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcC
Confidence             67777755554 57777777777777777777644

>PHA02798 ankyrin-like protein; Provisional

Probab=99.88  E-value=8.4e-22  Score=140.10  Aligned_cols=105  Identities=20%  Similarity=0.248  Sum_probs=67.8

Q ss_pred             CHHHHHHHHc-----CCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC---CHHHHHHHHHhCCCccccCCCCCCc
Q 048410            2 SHYVILAAQA-----GNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG---HVNFALEIMRLKPSFARKQNQYGFS   73 (151)
Q Consensus         2 ~~~l~~a~~~-----g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~t   73 (151)
                      .||||.|+..     +..++++.|++.|+++ +..+.  .|.||||+|+..+   +.+++++|++.|+++ +..|..|.|
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~--~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~t  147 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNS--DGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFT  147 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCC--CcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCc
Confidence            3666666543     4566777777777765 33333  2677777777654   567777777777666 556677777


Q ss_pred             HHHHHHhcCC---HHHHHHHHhhccccccccC-CCCCCcccc
Q 048410           74 PLHLALQNSH---TQMVLRLIDVDRNLVRVQG-REGVTPLHY  111 (151)
Q Consensus        74 ~L~~a~~~~~---~~~~~~ll~~~~~~~~~~~-~~~~t~l~~  111 (151)
                      |||+|+..++   .+++++|++.|++ ++..+ ..|.||+|.
T Consensus       148 pL~~a~~~~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~  188 (489)
T PHA02798        148 MLQVYLQSNHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHC  188 (489)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHhCCC-cccccCcCCCcHHHH
Confidence            7777777665   6777777777766 55553 356666663

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=7.2e-22  Score=145.28  Aligned_cols=141  Identities=23%  Similarity=0.248  Sum_probs=120.9

Q ss_pred             CHHHHHHHHc-CCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            2 SHYVILAAQA-GNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~-g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      .||||.|+.. ++.++++.|++.|.++ +.++.  .|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+.
T Consensus       342 ~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~--~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        342 ITPLHQASTLDRNKDIVITLLELGANV-NARDY--CDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALC  417 (682)
T ss_pred             CcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHH
Confidence            4899999986 4788999999999887 55553  4999999999999999999999999988 5668889999999987


Q ss_pred             cCC-HHHHHHHHhhccccccccCCCCCCcccc----c-CHHHHHHHHHhCCCCcccccccCCCccccccccCCC
Q 048410           81 NSH-TQMVLRLIDVDRNLVRVQGREGVTPLHY----G-NVDLLYKFLAACPESILQVTIYFPILLPFSSKFSPI  148 (151)
Q Consensus        81 ~~~-~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~-~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  148 (151)
                      .++ ..++++|++.|++ ++.+|..|.|||++    + +.++++.|+ ..|++++.++..|.||+++|+.+..+
T Consensus       418 ~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~~iv~lLl-~~Gad~n~~d~~g~tpl~~a~~~~~~  489 (682)
T PHA02876        418 GTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDVIEMLL-DNGADVNAINIQNQYPLLIALEYHGI  489 (682)
T ss_pred             cCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHHhCCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHhCCH
Confidence            665 5678999999999 99999999999998    3 578885555 56899999999999999999876543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=141.79  Aligned_cols=140  Identities=13%  Similarity=0.055  Sum_probs=107.0

Q ss_pred             CHHHHHHHHc---CCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC------------------------------
Q 048410            2 SHYVILAAQA---GNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG------------------------------   48 (151)
Q Consensus         2 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~------------------------------   48 (151)
                      +||||.|+..   |+.++|+.|++.|+++. ..+.  .|.||||+|+..|                              
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~-~~~~--~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~  109 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPL-HKNW--RQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYM  109 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCcc-ccCC--CCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHH
Confidence            4899997555   88999999999998873 3443  4888888777654                              


Q ss_pred             -----CHHHHHHHHHhCCCccccCCCCCCcHHHHHH--hcCCHHHHHHHHhhccccccccCC---CC-----------CC
Q 048410           49 -----HVNFALEIMRLKPSFARKQNQYGFSPLHLAL--QNSHTQMVLRLIDVDRNLVRVQGR---EG-----------VT  107 (151)
Q Consensus        49 -----~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~--~~~~~~~~~~ll~~~~~~~~~~~~---~~-----------~t  107 (151)
                           +.+++++|++.|+++ +..|..|.||||.++  ..|+.+++++|++.|++ ++..+.   .|           .|
T Consensus       110 a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~-vn~~d~~~~~g~~~~~~~~~~~~t  187 (661)
T PHA02917        110 KSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS-VLYEDEDDEYGYAYDDYQPRNCGT  187 (661)
T ss_pred             HhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC-cccccccccccccccccccccccc
Confidence                 345667777777777 667889999998543  56899999999999998 765442   23           58


Q ss_pred             cccc---c------------CHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          108 PLHY---G------------NVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       108 ~l~~---~------------~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ||++   .            +.++++.|+ ..|++++.+|.+|.||||+|++.+.
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li-~~Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVRPEVVKCLI-NHGIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             HHHHHHhhcccccccccccCcHHHHHHHH-HCCCCcccCCCCCCcHHHHHHHcCC
Confidence            9886   1            467885444 5689999999999999999998765

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=3.2e-21  Score=137.89  Aligned_cols=136  Identities=21%  Similarity=0.300  Sum_probs=119.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHH-hCCCccccCCCCCCcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR-LKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      .||||+|++.|++.++..|+..|.++..+ ..  .+.||||.|+..|+..+++.|++ .+....+..|..|.||||.|++
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-n~--d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~  350 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFGASINSK-NK--DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAK  350 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcCCccccc-CC--CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhh
Confidence            58999999999999999999999998444 33  38899999999999999999999 5555567789999999999999


Q ss_pred             cCCHHHHHHHHhhcccccc--ccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccc
Q 048410           81 NSHTQMVLRLIDVDRNLVR--VQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPF  141 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~--~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  141 (151)
                      .||..+++.|++.|+...+  ..|.+|.||||.    |+..++++|+. .|+++..+++.|.++++.
T Consensus       351 ~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~-~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  351 SGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS-HGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             cCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH-cCCceeeccccccccccc
Confidence            9999999999999998443  448899999998    99999966655 689999999999999884

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=116.48  Aligned_cols=117  Identities=18%  Similarity=0.203  Sum_probs=90.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHh------ChhhhhhhcCCCCCCchHHHHHhcCC----HHHHHHHHHhCCCccccCC-CC
Q 048410            2 SHYVILAAQAGNVDALYELIWE------DAYLLDQIDRVPFVDTPLHIAASMGH----VNFALEIMRLKPSFARKQN-QY   70 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~------~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~-~~   70 (151)
                      .|+||.|++.|+.++++.|+..      +..+ +..+.  .|.||||+|+..++    .+++++|++.+++. +.++ ..
T Consensus        22 ~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~--~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~   97 (169)
T PHA02741         22 ENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDD--AGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLE   97 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCC--CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCC
Confidence            4789999999999998887543      2333 44443  48899999998887    47788888888877 5556 37


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhh-ccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           71 GFSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        71 ~~t~L~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      |.||||+|+..++.+++++|++. +++ ++..|..|.|||++    ++.++++.|+..
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            89999999999999999998874 777 88888889999888    777888665553

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.6e-20  Score=124.54  Aligned_cols=133  Identities=13%  Similarity=0.138  Sum_probs=105.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhc-CCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQID-RVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      .++|+.|+..|+.++++.|++.|+++..... ....|.||||+|+..++.+++++|++.|+++....+..|.||||.|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            5789999999999999999999998743211 112489999999999999999999999998832335679999999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccc
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPF  141 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  141 (151)
                      .++.+++++|+..|++ ++.++..|.||++.    ++.+++ .++.  |..   .+..+.+|++.
T Consensus       114 ~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~-~~~~--~~~---~~~~~~~~~~~  171 (300)
T PHA02884        114 HGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLA-FMIC--DNE---ISNFYKHPKKI  171 (300)
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHH-HHhc--CCc---ccccccChhhh
Confidence            9999999999999999 99999999999997    555555 3332  221   34555566553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=8.5e-21  Score=141.80  Aligned_cols=133  Identities=16%  Similarity=0.091  Sum_probs=116.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.++++.|++.|+++ +..+.  .|.||||+|+..|+.++++.|+..+... +  ...+.++||.|+..
T Consensus       559 ~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~--~G~TpL~~A~~~g~~~iv~~L~~~~~~~-~--~~~~~~~L~~Aa~~  632 (823)
T PLN03192        559 RTPLHIAASKGYEDCVLVLLKHACNV-HIRDA--NGNTALWNAISAKHHKIFRILYHFASIS-D--PHAAGDLLCTAAKR  632 (823)
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCC-CCcCC--CCCCHHHHHHHhCCHHHHHHHHhcCccc-C--cccCchHHHHHHHh
Confidence            58999999999999999999999886 55554  4999999999999999999999866543 2  34577999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccC-CCccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYF-PILLPFS  142 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g-~t~l~~a  142 (151)
                      |+.++++.|++.|++ ++.+|..|.||||.    ++.++++.|+ ..|++++..+..| .+|..++
T Consensus       633 g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll-~~GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        633 NDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLI-MNGADVDKANTDDDFSPTELR  696 (823)
T ss_pred             CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHH-HcCCCCCCCCCCCCCCHHHHH
Confidence            999999999999999 99999999999998    9999996666 5789999999888 8887764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=133.60  Aligned_cols=136  Identities=16%  Similarity=0.202  Sum_probs=102.9

Q ss_pred             HHHHHHHHc--CCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC------CHHHHHHHHHhCCCccccCCCCCCcH
Q 048410            3 HYVILAAQA--GNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG------HVNFALEIMRLKPSFARKQNQYGFSP   74 (151)
Q Consensus         3 ~~l~~a~~~--g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~------~~~~~~~ll~~~~~~~~~~~~~~~t~   74 (151)
                      ++++.++..  ++.++|+.|++.|++++ ..+   .+.|||+.|+..+      ..+++++|++.|++. +.++..|.||
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~GAdvn-~~~---~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tp  111 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDNGADVN-YKG---YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSP  111 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHcCCCcc-CCC---CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence            566554433  36889999999998874 333   2678998886643      467889999988887 6778889999


Q ss_pred             HHHHHhc---CCHHHHHHHHhhccccc-cccCCCCCCcccc------cCHHHHHHHHHhCCCCccc-ccccCCCcccccc
Q 048410           75 LHLALQN---SHTQMVLRLIDVDRNLV-RVQGREGVTPLHY------GNVDLLYKFLAACPESILQ-VTIYFPILLPFSS  143 (151)
Q Consensus        75 L~~a~~~---~~~~~~~~ll~~~~~~~-~~~~~~~~t~l~~------~~~~~~~~ll~~~~~~~~~-~~~~g~t~l~~a~  143 (151)
                      ||.|+..   ++.+++++|++.|++ + +..+..|.||||+      ++.++++.|++ .|++++. .+..|.||+|.|+
T Consensus       112 L~~a~~~~~~~~~eiv~~Ll~~Gad-in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~~~~g~tpL~~a~  189 (494)
T PHA02989        112 IVCFIYNSNINNCDMLRFLLSKGIN-VNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLFEKTSLYGLTPMNIYL  189 (494)
T ss_pred             HHHHHHhcccCcHHHHHHHHHCCCC-cccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCccccccccCCChHHHHH
Confidence            9877654   678899999999888 7 7888889999886      46788855554 6778877 5778899998876


Q ss_pred             cc
Q 048410          144 KF  145 (151)
Q Consensus       144 ~~  145 (151)
                      +.
T Consensus       190 ~~  191 (494)
T PHA02989        190 RN  191 (494)
T ss_pred             hc
Confidence            54

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=3.4e-20  Score=103.35  Aligned_cols=89  Identities=26%  Similarity=0.382  Sum_probs=78.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCH
Q 048410            5 VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHT   84 (151)
Q Consensus         5 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~   84 (151)
                      ||.|++.|+.+++++|++.+.++ ..      |.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL------GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS------SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC------CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCH
Confidence            78999999999999999988665 22      579999999999999999999999988 67789999999999999999


Q ss_pred             HHHHHHHhhccccccccC
Q 048410           85 QMVLRLIDVDRNLVRVQG  102 (151)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~  102 (151)
                      +++++|++.|++ ++.+|
T Consensus        73 ~~~~~Ll~~g~~-~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEHGAD-VNIRN   89 (89)
T ss_dssp             HHHHHHHHTTT--TTSS-
T ss_pred             HHHHHHHHcCCC-CCCcC
Confidence            999999999988 76654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=2.3e-21  Score=127.81  Aligned_cols=141  Identities=21%  Similarity=0.243  Sum_probs=123.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC-----CHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG-----HVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      ||+||+++.++|+++|+.|++.|-.-++.+...  |+||+.+++...     +.+++..|...| +++......|.|+|+
T Consensus       269 NTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA--GYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALM  345 (452)
T KOG0514|consen  269 NTALHYAVSHANFDVVSILLDSGVCDVDQQNRA--GYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALM  345 (452)
T ss_pred             CeeeeeeecccchHHHHHHhccCcccccccccc--cccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhh
Confidence            789999999999999999999997766666654  999999876653     567787777655 443556778999999


Q ss_pred             HHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           77 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        77 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      +|...|+.++++.|+.+|++ ++.+|.+|.|+|+.    |+.+++++||...+++....|.+|.|+|.+|...+
T Consensus       346 LAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  346 LAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             hhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            99999999999999999999 99999999999998    99999999999999999999999999999987643

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=1.5e-20  Score=116.43  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=95.8

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHh------CCCccccCCCCCCcHHHHHHhcCC----HHHHHHHHhhccccccccCC-C
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSH----TQMVLRLIDVDRNLVRVQGR-E  104 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~t~L~~a~~~~~----~~~~~~ll~~~~~~~~~~~~-~  104 (151)
                      .|.|+||+|+..|+.++++.|+..      +.. .+.+|..|.||||+|+..|+    .+++++|+..|++ ++.++. .
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~~~~   97 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQEMLE   97 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCCcCC
Confidence            389999999999999999988653      233 36778899999999999998    5889999999999 888885 8


Q ss_pred             CCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          105 GVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       105 ~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |.||||+    ++.+++++|+...|++++.++..|.||||.|+...+
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED  144 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC
Confidence            9999998    899999877776789999999999999999988654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=1e-20  Score=141.20  Aligned_cols=139  Identities=24%  Similarity=0.279  Sum_probs=112.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+.++.+++.+.......+   .+-+++|.+...+...+++.+++.|... ..++..|.||||.|+.+|
T Consensus       476 T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~---~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g  551 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLEGGANDNLDAK---KGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYG  551 (1143)
T ss_pred             cchhhhhccCCchHHHHhhhcCCccCccch---hccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcC
Confidence            677778888888777777777754433332   2677788887777777777777777766 566788889999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +..+|++|+++|++ ++.++..|+||||.    ++.+|+ .||...|++++..+.+|.|||+.|++++.
T Consensus       552 ~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~-~LLlk~GA~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  552 NVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIA-ELLLKHGASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             CchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHH-HHHHHcCCCCCcccccCcchhHHHHHhcc
Confidence            99999999999999 99999999999998    888888 66666789999999999999999988754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=1.6e-20  Score=116.44  Aligned_cols=135  Identities=22%  Similarity=0.226  Sum_probs=100.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      +|+.+++...+.+.+-.+.+   ..++..|.  .|.|||.||+..|++.++++|++.|+++ ....+...++|..|++.|
T Consensus       131 s~~slsVhql~L~~~~~~~~---n~VN~~De--~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~gg  204 (296)
T KOG0502|consen  131 SPLSLSVHQLHLDVVDLLVN---NKVNACDE--FGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGG  204 (296)
T ss_pred             ChhhHHHHHHHHHHHHHHhh---ccccCccc--cCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCC
Confidence            35566666665555444332   22355554  4888888888888888888888888877 444666778888888888


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ..++|+.|+.++.+ ++.-|.+|-|||-+    ++.+|++.|+. .|+++...+..|++++.+|+..
T Consensus       205 ytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  205 YTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             hHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHh
Confidence            88888888888888 88888888888877    77888866655 5788888888888888777653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=110.34  Aligned_cols=123  Identities=15%  Similarity=0.208  Sum_probs=93.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHh----ChhhhhhhcCCCCCCchHHHHHhcCCH---HHHHHHHHhCCCccccCC-CCCCc
Q 048410            2 SHYVILAAQAGNVDALYELIWE----DAYLLDQIDRVPFVDTPLHIAASMGHV---NFALEIMRLKPSFARKQN-QYGFS   73 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~----~~~~~~~~~~~~~~~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~-~~~~t   73 (151)
                      .||||+|++.|+...+..+...    ........+.  .|.||||+|+..++.   +++++|++.|++. +.++ ..|.|
T Consensus        18 ~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~--~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T   94 (154)
T PHA02736         18 ENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNR--HGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNT   94 (154)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcC--CCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCc
Confidence            4899999999985332222111    1112233343  499999999999876   4688999999887 5666 58999


Q ss_pred             HHHHHHhcCCHHHHHHHHhh-ccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcc
Q 048410           74 PLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESIL  129 (151)
Q Consensus        74 ~L~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~  129 (151)
                      |||+|+..++.+++++|+.. +++ ++.++..|.|||++    ++.++++.|+ ..|++.+
T Consensus        95 ~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll-~~ga~~~  153 (154)
T PHA02736         95 PLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILR-AKGAQCK  153 (154)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCC
Confidence            99999999999999999985 777 89999999999998    8889885555 4666653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.81  E-value=3e-19  Score=123.16  Aligned_cols=128  Identities=13%  Similarity=0.017  Sum_probs=107.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCC---CCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRV---PFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLAL   79 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~---~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~   79 (151)
                      ||+|.|+..|+.+++++|+++|+...+..+..   ..+.+++|.++..++.+++++|++.|++. +.+|..|.||||+|+
T Consensus       151 t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa  229 (437)
T PHA02795        151 NAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAI  229 (437)
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHH
Confidence            78999999999999999999997543332110   12678999999999999999999999988 778999999999999


Q ss_pred             hcCCHHHHHHHHhhccccccccCCCCCCcccc----c--------CHHHHHHHHHhCCCCcccccc
Q 048410           80 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G--------NVDLLYKFLAACPESILQVTI  133 (151)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~--------~~~~~~~ll~~~~~~~~~~~~  133 (151)
                      ..|+.+++++|++.|++ ++.++..|.|||+.    +        +.++++.| ...|++++....
T Consensus       230 ~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelL-L~~gadI~~~~~  293 (437)
T PHA02795        230 YAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEIL-LREPLSIDCIKL  293 (437)
T ss_pred             HcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHH-HhCCCCCCchhH
Confidence            99999999999999999 99999999999998    4        35788644 556777766543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.81  E-value=1.5e-19  Score=112.23  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=109.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|||.+|+++|++..|++|++.|+++ .-..  ++..++|..|+..|..++++.|++.+.++ +..|.+|.|||.+|++.
T Consensus       161 fTpLiWAaa~G~i~vV~fLL~~GAdp-~~lg--k~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  161 FTPLIWAAAKGHIPVVQFLLNSGADP-DALG--KYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             chHhHHHHhcCchHHHHHHHHcCCCh-hhhh--hhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecC
Confidence            48999999999999999999999886 3322  23679999999999999999999999988 77799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLP  140 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~  140 (151)
                      +|.+|++.|+..|++ +.+-+..|.+++..    |+- +++..++.. +....++..-++|+|
T Consensus       237 nhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~h-~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  237 NHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEKH-ALKLCQDSEKRTPLH  296 (296)
T ss_pred             ChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHHH-HHHHhhcccCCCCCC
Confidence            999999999999999 89999999999887    555 676666653 455555666677765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.5e-19  Score=115.62  Aligned_cols=104  Identities=29%  Similarity=0.363  Sum_probs=84.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      +|||+|++.|+..+++.|+.+|+.++...-.   ..||||.|+..||.++++.|++..+++ +..+..|.||||+||.-|
T Consensus        36 splhwaakegh~aivemll~rgarvn~tnmg---ddtplhlaaahghrdivqkll~~kadv-navnehgntplhyacfwg  111 (448)
T KOG0195|consen   36 SPLHWAAKEGHVAIVEMLLSRGARVNSTNMG---DDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWG  111 (448)
T ss_pred             chhhhhhhcccHHHHHHHHhcccccccccCC---CCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhhhhhc
Confidence            5788888888888888888888887444332   468888888888888888888888877 666888888888888888


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      .-++.+-|+..|+. ++..|..|.||+..
T Consensus       112 ydqiaedli~~ga~-v~icnk~g~tpldk  139 (448)
T KOG0195|consen  112 YDQIAEDLISCGAA-VNICNKKGMTPLDK  139 (448)
T ss_pred             HHHHHHHHHhccce-eeecccCCCCchhh
Confidence            88888888888888 88888888888886

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=3e-19  Score=110.28  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=92.5

Q ss_pred             CCchHHHHHhcCCH----HHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHH---HHHHHHhhccccccccC-CCCCCc
Q 048410           37 VDTPLHIAASMGHV----NFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQ---MVLRLIDVDRNLVRVQG-REGVTP  108 (151)
Q Consensus        37 ~~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~---~~~~ll~~~~~~~~~~~-~~~~t~  108 (151)
                      +.+++|.|+..|..    +++++|.+.+... +..|..|+||||+|+..|+.+   ++++|++.|++ ++.++ ..|.||
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~~~g~Tp   97 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARELGTGNTL   97 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCCCCCCcH
Confidence            67899999999987    5555677767665 667889999999999998765   48999999999 89988 589999


Q ss_pred             ccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410          109 LHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       109 l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      ||+    ++.+++++|+...|++++.++..|.||+|+|+...
T Consensus        98 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~  139 (166)
T PHA02743         98 LHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMR  139 (166)
T ss_pred             HHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcC
Confidence            998    89999988876678999999999999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=4.3e-19  Score=117.79  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=91.4

Q ss_pred             CchHHHHHhcCCHHHHHHHHHhCCCccccC----CCCCCcHHHHHHhcCCHHHHHHHHhhcccccccc-CCCCCCcccc-
Q 048410           38 DTPLHIAASMGHVNFALEIMRLKPSFARKQ----NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQ-GREGVTPLHY-  111 (151)
Q Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~t~l~~-  111 (151)
                      .++|+.|+..++.++++.|++.|+++ +..    +..|.||||+|+..++.+++++|++.|++ ++.+ +..|.|||+. 
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~TpLh~A  111 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKITPLYIS  111 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCCCHHHHH
Confidence            45677788889999999999999988 443    46899999999999999999999999999 8886 4679999998 


Q ss_pred             ---cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410          112 ---GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus       112 ---~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                         ++.++++.|+ ..|++.+.++..|.||+|+|++.
T Consensus       112 a~~~~~eivklLL-~~GAdin~kd~~G~TpL~~A~~~  147 (300)
T PHA02884        112 VLHGCLKCLEILL-SYGADINIQTNDMVTPIELALMI  147 (300)
T ss_pred             HHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHh
Confidence               8899995555 56899999999999999999874

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.5e-20  Score=118.99  Aligned_cols=130  Identities=24%  Similarity=0.279  Sum_probs=110.5

Q ss_pred             HHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHH
Q 048410            8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV   87 (151)
Q Consensus         8 a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~   87 (151)
                      =|+.|+.-.|+..++.-...++.-|.  +|.+|||||+..|+..+++.|+..|+.+ +..+....||||.|+..||.++|
T Consensus         7 wcregna~qvrlwld~tehdln~gdd--hgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDD--HGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccc--cCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHH
Confidence            35677777777777665443333332  5899999999999999999999999888 67788889999999999999999


Q ss_pred             HHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccc
Q 048410           88 LRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFS  142 (151)
Q Consensus        88 ~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  142 (151)
                      ..|+++.++ +++.|..|.||||+    |+..+.+.|+. +|+.++.-++.|.||+..|
T Consensus        84 qkll~~kad-vnavnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   84 QKLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhh
Confidence            999999999 99999999999999    88888866655 6899999999999999764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.79  E-value=4e-19  Score=132.82  Aligned_cols=136  Identities=21%  Similarity=0.291  Sum_probs=118.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      +++|.+...+...+++.++++|.+. ..++.  .++||||.|+..|+.++|++|++++++. +.+++.|.||||.||..|
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~--r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G  584 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANV-DLRTG--RGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQG  584 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCce-ehhcc--cccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcC
Confidence            6899999999999999999999987 44443  3899999999999999999999999998 566899999999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCC-----cccccccCCCccccccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPES-----ILQVTIYFPILLPFSSK  144 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~-----~~~~~~~g~t~l~~a~~  144 (151)
                      +.+|++.|+++|+. ++..+.+|.|||+.    ++.++++.++. .++.     ....+..|.+|...+..
T Consensus       585 ~~~i~~LLlk~GA~-vna~d~~g~TpL~iA~~lg~~~~~k~l~~-~~~~~~~~~~~~e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  585 HNDIAELLLKHGAS-VNAADLDGFTPLHIAVRLGYLSVVKLLKV-VTATPAATDPVKENRKGAVPEDVAEE  653 (1143)
T ss_pred             hHHHHHHHHHcCCC-CCcccccCcchhHHHHHhcccchhhHHHh-ccCccccccchhhhhcccChhhHHHH
Confidence            99999999999999 99999999999998    99999955555 4555     55556678888776443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.79  E-value=1.2e-18  Score=126.94  Aligned_cols=134  Identities=13%  Similarity=0.049  Sum_probs=106.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHH--hcCCHHHHHHHHHhCCCccccCC---CCC------
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAA--SMGHVNFALEIMRLKPSFARKQN---QYG------   71 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~---~~~------   71 (151)
                      ++++.|+..|+.++|++|++.|+++ +..+.  .|.|||+.++  ..|+.+++++|++.|+++. ..|   ..|      
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~--~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~~~~~~  180 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDL-SVKCE--NHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGYAYDDY  180 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCC-CccCC--CCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccccccccc
Confidence            4567788889999999999999987 45453  3999999654  4689999999999999873 222   223      


Q ss_pred             -----CcHHHHHHh-----------cCCHHHHHHHHhhccccccccCCCCCCcccc----cC--HHHHHHHHHhCCCCcc
Q 048410           72 -----FSPLHLALQ-----------NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GN--VDLLYKFLAACPESIL  129 (151)
Q Consensus        72 -----~t~L~~a~~-----------~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~--~~~~~~ll~~~~~~~~  129 (151)
                           .||||+|+.           +++.+++++|++.|++ ++.++..|.||||+    ++  .++++.|+ . |++..
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li-~-g~d~~  257 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLM-K-GIDNT  257 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHH-h-CCccc
Confidence                 599999986           4689999999999999 99999999999998    55  47897765 3 65554


Q ss_pred             ----cccccCCCcccccc
Q 048410          130 ----QVTIYFPILLPFSS  143 (151)
Q Consensus       130 ----~~~~~g~t~l~~a~  143 (151)
                          ..+..|.+++++++
T Consensus       258 ~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        258 AYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             ccccccCcccccchHHHH
Confidence                45667888888777

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=9.4e-19  Score=104.96  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=97.5

Q ss_pred             chHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCH
Q 048410           39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNV  114 (151)
Q Consensus        39 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~  114 (151)
                      ..+.+|+..+....|+.|++..+...+.+|.+|.||||.|+.+||.+++..|+..|++ ...+...|+|||+.    .+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccch
Confidence            3566899999999999999999999999999999999999999999999999999999 99999999999998    888


Q ss_pred             HHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          115 DLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       115 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +++ .+|...|++++....-..||||+|+..++
T Consensus       144 ~va-~~LLqhgaDVnA~t~g~ltpLhlaa~~rn  175 (228)
T KOG0512|consen  144 EVA-GRLLQHGADVNAQTKGLLTPLHLAAGNRN  175 (228)
T ss_pred             hHH-HHHHhccCcccccccccchhhHHhhcccc
Confidence            888 55666799999988888999999987664

>PHA02730 ankyrin-like protein; Provisional

Probab=99.79  E-value=3e-18  Score=123.41  Aligned_cols=135  Identities=12%  Similarity=0.092  Sum_probs=96.8

Q ss_pred             CHHHHHHHHcC---CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcC--CHHHHHHHHHhCCCcc-ccCCC------
Q 048410            2 SHYVILAAQAG---NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMG--HVNFALEIMRLKPSFA-RKQNQ------   69 (151)
Q Consensus         2 ~~~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~~-~~~~~------   69 (151)
                      +||||+|+..|   +.++|+.|+++|+++ +.++.  .|.||||+|+..+  +.+++++|++.|+... +..+.      
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~--~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l  118 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNN--EGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDL  118 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCC--CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchH
Confidence            48999999997   589999999999997 45453  4999999998876  7999999999864220 11121      


Q ss_pred             -----------------------------------CCCcHHHHHHhcCCHHHHHHHHhhcccccc-------ccCCCCC-
Q 048410           70 -----------------------------------YGFSPLHLALQNSHTQMVLRLIDVDRNLVR-------VQGREGV-  106 (151)
Q Consensus        70 -----------------------------------~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~-------~~~~~~~-  106 (151)
                                                         .|.+|+++++..++.++|++|++.|++ ++       ..+.... 
T Consensus       119 ~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~-v~g~~~~~~~~~~~~c~  197 (672)
T PHA02730        119 YSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY-STGYVFRSCMYDSDRCK  197 (672)
T ss_pred             HHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCc-ccccccccccccCCccc
Confidence                                               345666777777777777777777777 53       1222333 


Q ss_pred             Ccccc----------cCHHHHHHHHHhCCCCcccccccCCCcccc
Q 048410          107 TPLHY----------GNVDLLYKFLAACPESILQVTIYFPILLPF  141 (151)
Q Consensus       107 t~l~~----------~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  141 (151)
                      |.|++          .+.+++ .+|...|++++.+|..|.||||+
T Consensus       198 ~~l~~~il~~~~~~~n~~eiv-~lLIs~GadIN~kd~~G~TpLh~  241 (672)
T PHA02730        198 NSLHYYILSHRESESLSKDVI-KCLIDNNVSIHGRDEGGSLPIQY  241 (672)
T ss_pred             hhHHHHHHhhhhhhccCHHHH-HHHHHCCCCCCCCCCCCCCHHHH
Confidence            33442          577888 45555689999999999999985

>PHA02730 ankyrin-like protein; Provisional

Probab=99.77  E-value=6.2e-18  Score=121.82  Aligned_cols=135  Identities=16%  Similarity=0.071  Sum_probs=108.7

Q ss_pred             HHHHHHHcC---CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCC----HHHHHHHHHhCCC-ccccCCCCCCcHH
Q 048410            4 YVILAAQAG---NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGH----VNFALEIMRLKPS-FARKQNQYGFSPL   75 (151)
Q Consensus         4 ~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~ll~~~~~-~~~~~~~~~~t~L   75 (151)
                      .|+.-..+|   +.++++.|+++|+++... .   .|.||||+|+..+.    .+++++|++.|+. ..+.+|..|.|||
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~---~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~L  421 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-T---DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCM  421 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-C---CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchH
Confidence            455555655   589999999999998543 2   48999999998874    8999999999874 3367788999999


Q ss_pred             HH---HHhcC---------CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccc-cCCCc
Q 048410           76 HL---ALQNS---------HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTI-YFPIL  138 (151)
Q Consensus        76 ~~---a~~~~---------~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~-~g~t~  138 (151)
                      |.   +...+         ..+++++|+++|++ ++.+|..|.|||++    ++.++++.|+ ..|++++.++. .|.||
T Consensus       422 h~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD-INakD~~G~TPLh~Aa~~~~~eive~LI-~~GAdIN~~d~~~g~Ta  499 (672)
T PHA02730        422 YGLILSRFNNCGYHCYETILIDVFDILSKYMDD-IDMIDNENKTLLYYAVDVNNIQFARRLL-EYGASVNTTSRSIINTA  499 (672)
T ss_pred             hHHHHHHhccccccccchhHHHHHHHHHhcccc-hhccCCCCCCHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCcCCcCH
Confidence            84   33222         23569999999999 99999999999998    7888885555 56999999996 59999


Q ss_pred             cccccc
Q 048410          139 LPFSSK  144 (151)
Q Consensus       139 l~~a~~  144 (151)
                      +|.|+.
T Consensus       500 L~~Aa~  505 (672)
T PHA02730        500 IQKSSY  505 (672)
T ss_pred             HHHHHH
Confidence            999875

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=5e-18  Score=116.79  Aligned_cols=137  Identities=23%  Similarity=0.238  Sum_probs=113.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc-----------------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA-----------------   64 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-----------------   64 (151)
                      .|++|.+|.-.+.++|+++++.|..+ +..+.  .++||+|.|+..|+..++++++..|++..                 
T Consensus        74 lTalhq~~id~~~e~v~~l~e~ga~V-n~~d~--e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea  150 (527)
T KOG0505|consen   74 LTALHQACIDDNLEMVKFLVENGANV-NAQDN--EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEA  150 (527)
T ss_pred             chhHHHHHhcccHHHHHHHHHhcCCc-ccccc--ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcc
Confidence            47899999999999999999999987 44443  38999999999999999998888876421                 


Q ss_pred             -----------------------------------------ccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCC
Q 048410           65 -----------------------------------------RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR  103 (151)
Q Consensus        65 -----------------------------------------~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~  103 (151)
                                                               ...+..|-|.||.|+..|..++.++|+..|.. ++.+|.
T Consensus       151 ~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~  229 (527)
T KOG0505|consen  151 TLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDY  229 (527)
T ss_pred             hhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccc
Confidence                                                     11223378889999999999999999999998 899999


Q ss_pred             CCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccc
Q 048410          104 EGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSS  143 (151)
Q Consensus       104 ~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  143 (151)
                      +|+||||.    +..+.++ +|...|++.+.+...|.||+.+|.
T Consensus       230 dgWtPlHAAA~Wg~~~~~e-lL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  230 DGWTPLHAAAHWGQEDACE-LLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             cCCCcccHHHHhhhHhHHH-HHHHhhcccchhhhcCCCCccchh
Confidence            99999998    8888885 777778899999999999998865

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.76  E-value=1.3e-17  Score=90.06  Aligned_cols=108  Identities=19%  Similarity=0.341  Sum_probs=94.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ..+.+++.+|.++.||..+..|.+++....    |++|||+|+-.|..+++.+|+..|++. +.+|+.|.|||..|.+-|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~g----gR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYG----GRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHhC----CcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHh
Confidence            356789999999999999999977654443    899999999999999999999999998 677999999999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc-cCHHH
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY-GNVDL  116 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~-~~~~~  116 (151)
                      |..+|++|++.|++ -..+..+|.+.+.. ...+|
T Consensus        79 H~~cVklLL~~GAd-rt~~~PdG~~~~eate~edI  112 (117)
T KOG4214|consen   79 HRDCVKLLLQNGAD-RTIHAPDGTALIEATEEEDI  112 (117)
T ss_pred             hHHHHHHHHHcCcc-cceeCCCchhHHhhccHHHH
Confidence            99999999999999 77888888887776 44443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=1.4e-18  Score=106.26  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=87.3

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCC----ccccCCCCCCcHHHHHHhcCCH---HHHHHHHhhccccccccC-CCCCC
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPS----FARKQNQYGFSPLHLALQNSHT---QMVLRLIDVDRNLVRVQG-REGVT  107 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~t~L~~a~~~~~~---~~~~~ll~~~~~~~~~~~-~~~~t  107 (151)
                      .|.||||+|+..|+...+........+    .....|..|.||||+|+..++.   +++++|++.|++ ++.++ ..|.|
T Consensus        16 ~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~~~~~~g~T   94 (154)
T PHA02736         16 EGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-INGKERVFGNT   94 (154)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccccCCCCCCc
Confidence            499999999999984322111111111    1234588899999999999986   468899999998 88888 48999


Q ss_pred             cccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410          108 PLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       108 ~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      |||+    ++.+++++|+...|++++.++..|.||+|+|+...
T Consensus        95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~  137 (154)
T PHA02736         95 PLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERH  137 (154)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcC
Confidence            9998    89999988877678999999999999999998754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=4.3e-18  Score=117.09  Aligned_cols=136  Identities=20%  Similarity=0.188  Sum_probs=112.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~   83 (151)
                      .+..|++.|+.+.+..|+..|..+ +....  .|.|+||.+|...+.+|+++++++++.+ +..|..++||||.|+..|+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~--DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNV--DGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCC--ccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhccccc
Confidence            367889999999999999999876 44443  4999999999999999999999999998 7889999999999999999


Q ss_pred             HHHHHHHHhhccccccccCCC-----------------------------------------------------------
Q 048410           84 TQMVLRLIDVDRNLVRVQGRE-----------------------------------------------------------  104 (151)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~~~-----------------------------------------------------------  104 (151)
                      ..++++++..|++. ...|..                                                           
T Consensus       119 ~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r  197 (527)
T KOG0505|consen  119 LNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR  197 (527)
T ss_pred             HHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc
Confidence            99999999999984 444443                                                           


Q ss_pred             CCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410          105 GVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus       105 ~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      |-|.||.    |+.++. .||...|.+++.+|..|+||||.|+-+
T Consensus       198 G~T~lHvAaa~Gy~e~~-~lLl~ag~~~~~~D~dgWtPlHAAA~W  241 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVA-ALLLQAGYSVNIKDYDGWTPLHAAAHW  241 (527)
T ss_pred             cchHHHHHHhhhHHHHH-HHHHHhccCcccccccCCCcccHHHHh
Confidence            4445554    666666 445556788999999999999987754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=5e-18  Score=126.15  Aligned_cols=76  Identities=22%  Similarity=0.305  Sum_probs=65.3

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhhccccccccC--------------CCCCCcccc----cCHHHHHHHHHhCCCCccc
Q 048410           69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQG--------------REGVTPLHY----GNVDLLYKFLAACPESILQ  130 (151)
Q Consensus        69 ~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~t~l~~----~~~~~~~~ll~~~~~~~~~  130 (151)
                      ..|.||||.|+..|+.++++.|++.|++ ++.++              ..|.+||+.    ++.++++.+ ...|++++.
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lL-l~~gadin~  203 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL-SEDPADILT  203 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHH-hcCCcchhh
Confidence            4589999999999999999999999998 77653              358899998    889999555 557889999


Q ss_pred             ccccCCCccccccccC
Q 048410          131 VTIYFPILLPFSSKFS  146 (151)
Q Consensus       131 ~~~~g~t~l~~a~~~~  146 (151)
                      +|..|+||+|+|+...
T Consensus       204 ~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       204 ADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HhhhhhHHHHHHHhhh
Confidence            9999999999998764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=3.7e-17  Score=91.02  Aligned_cols=85  Identities=26%  Similarity=0.424  Sum_probs=73.3

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHH
Q 048410           41 LHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDL  116 (151)
Q Consensus        41 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~  116 (151)
                      ||+|++.++.+++++|++.+.+. +.    |+||||+|+..|+.+++++|++.|++ ++.++.+|.|||+.    ++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHH
Confidence            78999999999999999977655 22    88999999999999999999999999 99999999999998    88999


Q ss_pred             HHHHHHhCCCCccccc
Q 048410          117 LYKFLAACPESILQVT  132 (151)
Q Consensus       117 ~~~ll~~~~~~~~~~~  132 (151)
                      +++|+. .|++++.+|
T Consensus        75 ~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HHHHHH-TTT-TTSS-
T ss_pred             HHHHHH-cCCCCCCcC
Confidence            977775 588887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=4.3e-16  Score=91.51  Aligned_cols=114  Identities=27%  Similarity=0.440  Sum_probs=82.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|+|+.|+..|+.+++++|++.+... ...+.  .|.+|++.|+..+..+++++++..+... +..+..+.+|+|+|+..
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~--~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLENGADV-NAKDN--DGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC-CccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHc
Confidence            36788888888888888888877764 33332  3778888888888888888888877654 45566777888888888


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKF  120 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~l  120 (151)
                      ++.+++++|++.+.. .+..+..+.||++.    ++.+++++|
T Consensus        84 ~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          84 GNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            888888888877766 66677777788776    555555443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=1.4e-16  Score=114.46  Aligned_cols=144  Identities=16%  Similarity=0.126  Sum_probs=117.6

Q ss_pred             CHHHHHHHHc---CCHHHHHHHHHhChhhhhhh--cCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcccc----------
Q 048410            2 SHYVILAAQA---GNVDALYELIWEDAYLLDQI--DRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK----------   66 (151)
Q Consensus         2 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~--~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~----------   66 (151)
                      +|+||.|..+   ++-++++.|++..|..++..  +..+.|.||||+|....+.++++.|++.|+++...          
T Consensus       144 ET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~d  223 (782)
T KOG3676|consen  144 ETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDD  223 (782)
T ss_pred             hhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccc
Confidence            4789999874   45578999999999876654  23367999999999999999999999999886411          


Q ss_pred             C------------CCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCC--c
Q 048410           67 Q------------NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPES--I  128 (151)
Q Consensus        67 ~------------~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~--~  128 (151)
                      +            -+.|+.||.+|+=.++.+++++|+++|++ ++++|..|.|.||.    ...++. .++...|++  .
T Consensus       224 qk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My-~~~L~~ga~~l~  301 (782)
T KOG3676|consen  224 QKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMY-DLALELGANALE  301 (782)
T ss_pred             ccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHH-HHHHhcCCCccc
Confidence            1            24588999999999999999999999999 99999999999998    455555 444556777  7


Q ss_pred             ccccccCCCccccccccCC
Q 048410          129 LQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       129 ~~~~~~g~t~l~~a~~~~~  147 (151)
                      ..+|..|-|||.+|++-++
T Consensus       302 ~v~N~qgLTPLtLAaklGk  320 (782)
T KOG3676|consen  302 HVRNNQGLTPLTLAAKLGK  320 (782)
T ss_pred             cccccCCCChHHHHHHhhh
Confidence            7889999999999998664

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-16  Score=114.36  Aligned_cols=140  Identities=21%  Similarity=0.201  Sum_probs=118.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      |.||.|+.+|+.++++.|++..+-+ +..+.  .|.+|||+|+..|+.++++.++.++... +.....|.+|||.++..|
T Consensus        51 Talhha~Lng~~~is~llle~ea~l-dl~d~--kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhg  126 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALL-DLCDT--KGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHG  126 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhh-hhhhc--cCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhc
Confidence            7899999999999999999998875 44442  3899999999999999999999998544 677888999999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCC--------cccccccCCCccccccccCCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPES--------ILQVTIYFPILLPFSSKFSPI  148 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~--------~~~~~~~g~t~l~~a~~~~~~  148 (151)
                      |.+++.+|+.++++ .-.+|+.+.|++.+    |..++++.|+.. .-.        ...++..+.+|+|+|+++..+
T Consensus       127 h~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~  202 (854)
T KOG0507|consen  127 HLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHV  202 (854)
T ss_pred             chHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchH
Confidence            99999999999999 88999999999998    888998877664 111        223455678999999998643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.68  E-value=1.7e-16  Score=118.11  Aligned_cols=139  Identities=20%  Similarity=0.181  Sum_probs=104.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhh-----------cCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCC
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQI-----------DRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQY   70 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~-----------~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   70 (151)
                      .||||.|+..|+.++|+.|++.|+++....           +...+|.+||+.|+..++.++++.|++.++++ +.+|..
T Consensus       129 ~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~  207 (743)
T TIGR00870       129 ITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSL  207 (743)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhh
Confidence            389999999999999999999999874221           11235889999999999999999999999877 677999


Q ss_pred             CCcHHHHHHhcC---------CHHHHHHHHhhcccc--c----cccCCCCCCcccc----cCHHHHHHHHHhCCCCcccc
Q 048410           71 GFSPLHLALQNS---------HTQMVLRLIDVDRNL--V----RVQGREGVTPLHY----GNVDLLYKFLAACPESILQV  131 (151)
Q Consensus        71 ~~t~L~~a~~~~---------~~~~~~~ll~~~~~~--~----~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~  131 (151)
                      |+||||+|+..+         ...+.++++..++..  .    ...|..|.||++.    ++.++++.++... ......
T Consensus       208 g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~-~~~kk~  286 (743)
T TIGR00870       208 GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK-YKQKKF  286 (743)
T ss_pred             hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH-Hhccee
Confidence            999999999886         234566666655441  2    5578899999998    8899997777642 222222


Q ss_pred             cccCCCccccc
Q 048410          132 TIYFPILLPFS  142 (151)
Q Consensus       132 ~~~g~t~l~~a  142 (151)
                      ...+..+.+++
T Consensus       287 ~a~~~~~~~~~  297 (743)
T TIGR00870       287 VAWPNGQQLLS  297 (743)
T ss_pred             eccCcchHhHh
Confidence            34444454443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.66  E-value=1.3e-15  Score=109.14  Aligned_cols=133  Identities=12%  Similarity=0.018  Sum_probs=106.2

Q ss_pred             HHHHHHHcC--CHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCC--CcHHHHHH
Q 048410            4 YVILAAQAG--NVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYG--FSPLHLAL   79 (151)
Q Consensus         4 ~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~t~L~~a~   79 (151)
                      .||.-...+  +.+++++|++.|....  ...   ....++.|+..+..+++++|++.|++. +.+|..|  .||||.|+
T Consensus       309 ~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~---~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~  382 (631)
T PHA02792        309 LLSEYVSYHTVYINVIKCMIDEGATLY--RFK---HINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTL  382 (631)
T ss_pred             HHHHHHhcCCccHHHHHHHHHCCCccc--cCC---cchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHH
Confidence            345555566  6688999999999863  211   346688899999999999999999988 5556654  68999877


Q ss_pred             hcCCH---HHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           80 QNSHT---QMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        80 ~~~~~---~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      .....   +++++++++|++ ++.++..|.|||+.    ++.+++++|+. .|++++.++..|.||++.|+.
T Consensus       383 ~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        383 SIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH
Confidence            76554   467888999999 99999999999998    78888855555 689999999999999999865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.65  E-value=2.6e-15  Score=107.62  Aligned_cols=105  Identities=13%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCH---HHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHV---NFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      .++.|+..|+.++|++|+++|+++ +..+....+.||||+|+.....   ++++++++.|++. +.+|..|.||||+|+.
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~  419 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIE  419 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHH
Confidence            578899999999999999999997 4444321246999987776654   4578889999888 6789999999999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      .++.+++++|++.|++ ++.++..|.||++.
T Consensus       420 ~~n~eivelLLs~GAD-IN~kD~~G~TpL~~  449 (631)
T PHA02792        420 SHSVSLVEWLIDNGAD-INITTKYGSTCIGI  449 (631)
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHH
Confidence            9999999999999999 99999999999997

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.64  E-value=5.3e-16  Score=110.86  Aligned_cols=143  Identities=22%  Similarity=0.220  Sum_probs=120.5

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCh------------hhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCC
Q 048410            1 MSHYVILAAQAGNVDALYELIWEDA------------YLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN   68 (151)
Q Consensus         1 ~~~~l~~a~~~g~~~~v~~ll~~~~------------~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~   68 (151)
                      |++-+..|++.|+++.+..+++...            +-.+-++  ..|.|+||.|+..|+..+++.|++..+.. ...|
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd--~~gfTalhha~Lng~~~is~llle~ea~l-dl~d   79 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQD--YSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCD   79 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccC--ccchhHHHHHHhcCchHHHHHHhcchhhh-hhhh
Confidence            3566889999999999999998721            1112222  35899999999999999999999987665 5667


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        69 ~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      ..|.+|||+|++.|+.++++.++..+.. ++..+.+|.||||.    ++.+++.+|+ ..+++.-.++..+.|++.+|++
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll-~~~adp~i~nns~~t~ldlA~q  157 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLL-KKNADPFIRNNSKETVLDLASR  157 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHH-hcCCCccccCcccccHHHHHHH
Confidence            8899999999999999999999999877 89999999999998    9999995554 5678888899999999999999


Q ss_pred             cCCC
Q 048410          145 FSPI  148 (151)
Q Consensus       145 ~~~~  148 (151)
                      +.+.
T Consensus       158 fgr~  161 (854)
T KOG0507|consen  158 FGRA  161 (854)
T ss_pred             hhhh
Confidence            8753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.64  E-value=3.2e-15  Score=109.67  Aligned_cols=103  Identities=24%  Similarity=0.224  Sum_probs=89.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ..|+.|+..|+.+.++.|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.|++. +..|..|.||||+|+..+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~--~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDY--DGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC--CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCC
Confidence            3588999999999999999999987 44453  4999999999999999999999999888 678999999999999999


Q ss_pred             CHHHHHHHHhh-------ccccccccCCCCCCccc
Q 048410           83 HTQMVLRLIDV-------DRNLVRVQGREGVTPLH  110 (151)
Q Consensus        83 ~~~~~~~ll~~-------~~~~~~~~~~~~~t~l~  110 (151)
                      +.+++++|+++       +++ ....+..|.+|+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~  193 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSL  193 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCC-CCccccCCCCccc
Confidence            99999999998       666 6666666666544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=93.23  Aligned_cols=117  Identities=26%  Similarity=0.324  Sum_probs=96.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCC-----HHHHHHHHHhCC--CccccCCCCCCcHH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGH-----VNFALEIMRLKP--SFARKQNQYGFSPL   75 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~~~~t~L   75 (151)
                      ++++.++..+....+++++..+.++ ...+.  .|.|++|+|+..++     .++++.|++.+.  ......+..|.|||
T Consensus        75 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~--~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          75 LPLHSAASKGDDKIVKLLLASGADV-NAKDA--DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCc-ccccC--CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            5678888888888888889888887 55554  38899999999998     899999999888  55567788899999


Q ss_pred             HHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           76 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        76 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      |+|+..|+.++++.+++.+++ ++..+..|.|+++.    +..+++..++..
T Consensus       152 ~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         152 HWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             HHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            999999998999999998888 88888889999887    677777555553

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2.3e-15  Score=104.14  Aligned_cols=112  Identities=21%  Similarity=0.224  Sum_probs=96.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCH
Q 048410            5 VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHT   84 (151)
Q Consensus         5 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~   84 (151)
                      |..|+..|.++.|+..+..-.++....+   .|.|+||-|+-.||.+++++|++.|+++ +..|.+|+||||.|+..++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNd---EGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPND---EGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCc---cchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCch
Confidence            6789999999999999977665544444   3999999999999999999999999998 77899999999999999999


Q ss_pred             HHHHHHHhhccccccccC-CCCCCcccc------cCHHHHHHHH
Q 048410           85 QMVLRLIDVDRNLVRVQG-REGVTPLHY------GNVDLLYKFL  121 (151)
Q Consensus        85 ~~~~~ll~~~~~~~~~~~-~~~~t~l~~------~~~~~~~~ll  121 (151)
                      .+++.|++.|+. +-+.. .++.|+...      |+..|..+|.
T Consensus       630 ~~ckqLVe~Gaa-vfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  630 PMCKQLVESGAA-VFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHHhccce-EEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999999998 55544 467888776      8888887663

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=6e-15  Score=106.25  Aligned_cols=121  Identities=19%  Similarity=0.241  Sum_probs=107.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcC--------------------CCCCCchHHHHHhcCCHHHHHHHHHhCC
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDR--------------------VPFVDTPLHIAASMGHVNFALEIMRLKP   61 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~--------------------~~~~~t~l~~a~~~~~~~~~~~ll~~~~   61 (151)
                      .|+||.|+.+.+.+.|+.|++.|+++......                    .++|..||.+|+-.+..++++.|+++++
T Consensus       185 qSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gA  264 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGA  264 (782)
T ss_pred             cchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCC
Confidence            58999999999999999999999987443321                    3568899999999999999999999999


Q ss_pred             CccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccc-cccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           62 SFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN-LVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        62 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      ++ +.+|..|+|.||..+..-..++...+++.|++ ....+|..|-|||.+    |..++.+++++.
T Consensus       265 d~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  265 DP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            98 77899999999999999888999999999876 246678999999998    999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=1.4e-14  Score=85.02  Aligned_cols=108  Identities=29%  Similarity=0.408  Sum_probs=95.7

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----  111 (151)
                      .|.|||+.|+..++.+++++++..+... +..+..|.+|++.++..+..++++++++.+.. ++..+..+.||++.    
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence            4899999999999999999999998876 56788999999999999999999999999987 78888899999998    


Q ss_pred             cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410          112 GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      ++.+++++|+. .+.+.+..+..|.||++.|....
T Consensus        84 ~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~  117 (126)
T cd00204          84 GNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNG  117 (126)
T ss_pred             CcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence            88888966666 56778888899999999988763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.61  E-value=1e-15  Score=101.50  Aligned_cols=130  Identities=22%  Similarity=0.276  Sum_probs=101.7

Q ss_pred             CHHHHHHHHHh----Chhh----hhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc---
Q 048410           13 NVDALYELIWE----DAYL----LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN---   81 (151)
Q Consensus        13 ~~~~v~~ll~~----~~~~----~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~---   81 (151)
                      +.+.|...+..    ++.+    ++..|.+  |+|+|||++.++++++++.|++.|.=..+++++.|.||+++++..   
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsN--GNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk  315 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSN--GNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLK  315 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCC--CCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhc
Confidence            44555555443    3332    3444554  999999999999999999999988555578899999999998753   


Q ss_pred             --CCHHHHHHHHhhccccccccC-CCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 --SHTQMVLRLIDVDRNLVRVQG-REGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 --~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                        .+.++|+.|.+.| + ++++- ..|+|+|++    |+.+++ ..|+.+|++++.+|.+|.|+|++|+.++.
T Consensus       316 ~~~d~~vV~~LF~mg-n-VNaKAsQ~gQTALMLAVSHGr~d~v-k~LLacgAdVNiQDdDGSTALMCA~EHGh  385 (452)
T KOG0514|consen  316 QPADRTVVERLFKMG-D-VNAKASQHGQTALMLAVSHGRVDMV-KALLACGADVNIQDDDGSTALMCAAEHGH  385 (452)
T ss_pred             chhhHHHHHHHHhcc-C-cchhhhhhcchhhhhhhhcCcHHHH-HHHHHccCCCccccCCccHHHhhhhhhCh
Confidence              3677888888764 3 56654 569999998    999999 55566899999999999999999998764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.60  E-value=5.2e-15  Score=74.55  Aligned_cols=54  Identities=30%  Similarity=0.442  Sum_probs=37.5

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHH
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI   91 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll   91 (151)
                      |.|++|+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            467888888888888888888877776 455777888888888888888887775

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=3.7e-15  Score=80.63  Aligned_cols=100  Identities=17%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             chHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCH
Q 048410           39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNV  114 (151)
Q Consensus        39 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~  114 (151)
                      -.+.|+...|.++-++..+..+.++ +. ...|++|||+|+-+|.++++++|+..|++ ++.+|.+|-|||-.    |+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV-n~-~~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV-NE-IYGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH-HH-HhCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhH
Confidence            4567889999999999998888666 33 34899999999999999999999999999 99999999999876    999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCccccc
Q 048410          115 DLLYKFLAACPESILQVTIYFPILLPFS  142 (151)
Q Consensus       115 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a  142 (151)
                      ++++.|| ..|++.-.+.+.|.+.+..+
T Consensus        81 ~cVklLL-~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   81 DCVKLLL-QNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHH-HcCcccceeCCCchhHHhhc
Confidence            9995555 46888888889998876643

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.57  E-value=1.9e-15  Score=112.36  Aligned_cols=141  Identities=18%  Similarity=0.222  Sum_probs=124.1

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         1 ~~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      ++|+|..||+.|+.+.|..|+.+|+++ +-+++  .|.+||.+|+..||..+++.|+...+++..+.|+.++|+|..||.
T Consensus       757 ~~t~LT~acaggh~e~vellv~rgani-ehrdk--kgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANI-EHRDK--KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccc-ccccc--ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            467899999999999999999999987 55554  399999999999999999999999999888899999999999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCccccc--ccCCCccccccccC
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVT--IYFPILLPFSSKFS  146 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~--~~g~t~l~~a~~~~  146 (151)
                      .|+.++++.|+..|++ ...++....|||.+    ++.++| .++...|+.++.+.  +-|-.||.+|..+.
T Consensus       834 ggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI-~~llS~GseInSrtgSklgisPLmlatmng  903 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKII-HALLSSGSEINSRTGSKLGISPLMLATMNG  903 (2131)
T ss_pred             CCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHH-HHHhhcccccccccccccCcchhhhhhhcc
Confidence            9999999999999999 78889999999998    899999 45555677777764  56889999887654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=9.9e-15  Score=73.95  Aligned_cols=53  Identities=30%  Similarity=0.567  Sum_probs=20.5

Q ss_pred             HHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCccc
Q 048410           57 MRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH  110 (151)
Q Consensus        57 l~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  110 (151)
                      ++.++...+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||++
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~   54 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLH   54 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHH
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHH
Confidence            3444222345566666666666666666666666655555 6666666666654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=1.5e-13  Score=101.09  Aligned_cols=101  Identities=19%  Similarity=0.142  Sum_probs=87.9

Q ss_pred             hHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHH
Q 048410           40 PLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVD  115 (151)
Q Consensus        40 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~  115 (151)
                      .|+.|+..|+.+.++.|++.+++. +..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|||+.    ++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHH
Confidence            478899999999999999999887 67799999999999999999999999999999 99999999999998    8899


Q ss_pred             HHHHHHHh------CCCCcccccccCCCccccc
Q 048410          116 LLYKFLAA------CPESILQVTIYFPILLPFS  142 (151)
Q Consensus       116 ~~~~ll~~------~~~~~~~~~~~g~t~l~~a  142 (151)
                      +++.|+..      .+++.+..+..|.+|+..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99776654      3667777777777776543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=1.2e-12  Score=84.22  Aligned_cols=109  Identities=24%  Similarity=0.327  Sum_probs=97.8

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC-----HHHHHHHHhhcc--ccccccCCCCCCcc
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH-----TQMVLRLIDVDR--NLVRVQGREGVTPL  109 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~~~~t~l  109 (151)
                      +.++++.++..+...++++++..+.++ +.++..|.||||+|+..++     .++++.|++.|+  ......+..|.||+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            679999999999999999999999998 8889999999999999999     999999999999  43777899999999


Q ss_pred             cc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          110 HY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       110 ~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.    ++.++++.++. .|++.+.++..|.|++++|.....
T Consensus       152 ~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~  192 (235)
T COG0666         152 HWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGR  192 (235)
T ss_pred             HHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccch
Confidence            98    88888855555 588999999999999999987754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=2.3e-13  Score=68.46  Aligned_cols=53  Identities=26%  Similarity=0.329  Sum_probs=42.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIM   57 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll   57 (151)
                      .|+||.|++.|+.+++++|++.+.++ +.++.  .|.||||+|+..|+.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~--~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADI-NAQDE--DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-T--TS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCC--CCCCHHHHHHHccCHHHHHHHC
Confidence            47999999999999999999999887 44454  4999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=1.5e-13  Score=69.55  Aligned_cols=56  Identities=27%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             HHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHH
Q 048410           20 LIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLA   78 (151)
Q Consensus        20 ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a   78 (151)
                      |++.++..++.++.  .|.||||+|+..|+.+++++|++.+.+. +.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~--~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDK--YGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---T--TS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCC--CCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            45666333355554  4999999999999999999999888887 78899999999986

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=1.8e-12  Score=84.06  Aligned_cols=113  Identities=18%  Similarity=0.193  Sum_probs=98.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++|..++-.|+.+....|++.-..+ +-.|+  .|.++|..|+..|+.+.++.+++.|++++..++..+.|||+.|+.+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~--sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQV-NQRDP--SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhh-hccCC--CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            46889999999999999999875444 44454  4999999999999999999999999999777888899999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLY  118 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~  118 (151)
                      |+.++.+.|++.|+. +...|.-|.|+-+.    |+.+++.
T Consensus        90 Gn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             CCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHH
Confidence            999999999999999 89999999998776    7777773

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=5.1e-12  Score=87.95  Aligned_cols=98  Identities=22%  Similarity=0.263  Sum_probs=83.8

Q ss_pred             HHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHH
Q 048410           43 IAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLY  118 (151)
Q Consensus        43 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~  118 (151)
                      -|+..|-+++++.++..-.++ .+.+..|.|+||.|+-.||.+||++|+.+|++ ++..|..||||||.    .+..+++
T Consensus       556 DaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHH
Confidence            378889999999999887777 56678899999999999999999999999999 99999999999998    7888888


Q ss_pred             HHHHhCCCCcccccccCCCccccc
Q 048410          119 KFLAACPESILQVTIYFPILLPFS  142 (151)
Q Consensus       119 ~ll~~~~~~~~~~~~~g~t~l~~a  142 (151)
                      .|.+.+++.+-..-.++.|+..-+
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             HHHhccceEEeeecccccchhhhc
Confidence            888877666655556777776543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.34  E-value=2.1e-12  Score=96.66  Aligned_cols=135  Identities=16%  Similarity=0.139  Sum_probs=62.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~   83 (151)
                      ||..|...|+...++.|++.|.+++.....+  .+|+|..|+-.|+.+++..||...+.. ..+-+.|.|||+-++..|.
T Consensus       895 PLmlatmngh~~at~~ll~~gsdiNaqIeTN--rnTaltla~fqgr~evv~lLLa~~anv-ehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  895 PLMLATMNGHQAATLSLLQPGSDINAQIETN--RNTALTLALFQGRPEVVFLLLAAQANV-EHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             hhhhhhhccccHHHHHHhcccchhccccccc--cccceeeccccCcchHHHHHHHHhhhh-hhhcccCCcccchhhcCCc
Confidence            3444444444444444444444432222211  334444444444444444444444333 3334444444444444444


Q ss_pred             HHHHHHHHhhccccccccCC--CCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccc
Q 048410           84 TQMVLRLIDVDRNLVRVQGR--EGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSS  143 (151)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~~--~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  143 (151)
                      +++-+.|+..|++ .+..-.  .-.|.|.+    |+...+. ++..+.+.+++++++|.|+|++|+
T Consensus       972 vdvg~~li~~gad-~nasPvp~T~dtalti~a~kGh~kfv~-~lln~~atv~v~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen  972 VDVGNLLIAAGAD-TNASPVPNTWDTALTIPANKGHTKFVP-KLLNGDATVRVPNKKGCTVLWLAS 1035 (2131)
T ss_pred             cccchhhhhcccc-cccCCCCCcCCccceeecCCCchhhhH-HhhCCccceecccCCCCcccchhc
Confidence            4444444444444 333211  11222222    5566563 344455677777778888877755

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.33  E-value=9.2e-12  Score=80.86  Aligned_cols=88  Identities=20%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ++|..|+..|+.+.|+.+++.|++++..+...  ++|||+.|+.+|+.++++.+++.|+.. ...+..|+|+-..|+.-|
T Consensus        47 s~LahAaykGnl~~v~lll~~gaDvN~~qhg~--~YTpLmFAALSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG  123 (396)
T KOG1710|consen   47 SVLAHAAYKGNLTLVELLLELGADVNDKQHGT--LYTPLMFAALSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVG  123 (396)
T ss_pred             cHHHHHHhcCcHHHHHHHHHhCCCcCcccccc--cccHHHHHHHcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhc
Confidence            67899999999999999999999998888764  899999999999999999999999887 456888999999999999


Q ss_pred             CHHHHHHHHhh
Q 048410           83 HTQMVLRLIDV   93 (151)
Q Consensus        83 ~~~~~~~ll~~   93 (151)
                      ++++|..+-.+
T Consensus       124 ~H~CV~iINN~  134 (396)
T KOG1710|consen  124 HHECVAIINNH  134 (396)
T ss_pred             chHHHHHHhcc
Confidence            99998776543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.16  E-value=5e-11  Score=82.06  Aligned_cols=85  Identities=27%  Similarity=0.333  Sum_probs=47.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCH
Q 048410            5 VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHT   84 (151)
Q Consensus         5 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~   84 (151)
                      +..|++.|++..++++.-+|.+. +..|  +..+|+||.|+..|+.+++++|++......+.+|++|+|||.-|..++|.
T Consensus       510 ~~~aa~~GD~~alrRf~l~g~D~-~~~D--yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  510 VMYAAKNGDLSALRRFALQGMDL-ETKD--YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhcCCHHHHHHHHHhcccc-cccc--cccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            45555666666666666555554 3333  22456666666666666666666554433355566666666666666666


Q ss_pred             HHHHHHHh
Q 048410           85 QMVLRLID   92 (151)
Q Consensus        85 ~~~~~ll~   92 (151)
                      +++++|-+
T Consensus       587 ~v~k~L~~  594 (622)
T KOG0506|consen  587 EVVKLLEE  594 (622)
T ss_pred             HHHHHHHH
Confidence            66555554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.10  E-value=7.8e-11  Score=86.13  Aligned_cols=97  Identities=23%  Similarity=0.355  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHh-ChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHH
Q 048410           12 GNVDALYELIWE-DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRL   90 (151)
Q Consensus        12 g~~~~v~~ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~l   90 (151)
                      |....++-++.. +.+..+..|.  +|+++||+++..+..+++++|+++|.+..-+....|.||||.|..+|+++++..|
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~--~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lL  105 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDR--YGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLL  105 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHh--hccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHH
Confidence            334345544444 3444455554  5999999999999999999999999988545456799999999999999999999


Q ss_pred             HhhccccccccCCCCCCcccc
Q 048410           91 IDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        91 l~~~~~~~~~~~~~~~t~l~~  111 (151)
                      +++|+. ...+|.+|..||+.
T Consensus       106 L~~g~S-L~i~Dkeglsplq~  125 (1267)
T KOG0783|consen  106 LSKGRS-LRIKDKEGLSPLQF  125 (1267)
T ss_pred             HhcCCc-eEEecccCCCHHHH
Confidence            999999 99999999999886

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.02  E-value=1.7e-09  Score=75.13  Aligned_cols=83  Identities=22%  Similarity=0.347  Sum_probs=67.6

Q ss_pred             chHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCH
Q 048410           39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNV  114 (151)
Q Consensus        39 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~  114 (151)
                      .-||-+++.|+.++.-.|+..|++.+..--..|.||||.|++.|..-.++.|.-+|++ +...|.+|.||+.+    |+.
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhcCch
Confidence            4677788888888888888888888555556688999999999998888888889998 88889999999888    777


Q ss_pred             HHHHHHHH
Q 048410          115 DLLYKFLA  122 (151)
Q Consensus       115 ~~~~~ll~  122 (151)
                      ++.+.|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            77666654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.00  E-value=2.6e-09  Score=74.22  Aligned_cols=88  Identities=24%  Similarity=0.315  Sum_probs=75.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +.-||..+|.|+.+..-+|+..|+++ +...+. .|.||||.|+..|...-+..|+-+|+++ +..|..|.||+.+|...
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~-N~~hpe-kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQA-NFFHPE-KGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHccccc-CCCCcc-cCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhc
Confidence            34589999999999999999999997 444332 4999999999999999999999999999 56699999999999999


Q ss_pred             CCHHHHHHHHh
Q 048410           82 SHTQMVLRLID   92 (151)
Q Consensus        82 ~~~~~~~~ll~   92 (151)
                      ||.++.+.|++
T Consensus       211 gH~~laeRl~e  221 (669)
T KOG0818|consen  211 GHHELAERLVE  221 (669)
T ss_pred             CchHHHHHHHH
Confidence            99887666654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.99  E-value=7.5e-10  Score=48.40  Aligned_cols=26  Identities=35%  Similarity=0.586  Sum_probs=15.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhhccc
Q 048410           71 GFSPLHLALQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        71 ~~t~L~~a~~~~~~~~~~~ll~~~~~   96 (151)
                      |+||||+||+.|+.+++++|++.|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            45555555555555555555555554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.96  E-value=2.6e-09  Score=75.59  Aligned_cols=113  Identities=22%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCc-cccCCCCCCcHHHHHHhcCC
Q 048410            5 VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF-ARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         5 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~t~L~~a~~~~~   83 (151)
                      +..|+..+++--++.....|.++ ..++.  +-.+.||+|+..|+-+++++++++++.. +...|..|+|+||.|+-.++
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~--~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGP--DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCc--chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            56778888887777777777776 33332  2679999999999999999999998754 45568899999999999999


Q ss_pred             HHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHH
Q 048410           84 TQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFL  121 (151)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll  121 (151)
                      ..++.+|++.|+. +...|..|.||-..    ++.+...+|-
T Consensus       947 r~vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  947 RAVCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             hHHHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHh
Confidence            9999999999999 88899999999776    8888774543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.95  E-value=2e-09  Score=48.29  Aligned_cols=31  Identities=29%  Similarity=0.516  Sum_probs=18.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhhccccccccC
Q 048410           71 GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQG  102 (151)
Q Consensus        71 ~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~  102 (151)
                      |.||||+|+..++.+++++|++.|++ ++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD-INARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC-CCCCC
Confidence            55666666666666666666665555 44443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.93  E-value=6.4e-09  Score=73.52  Aligned_cols=91  Identities=18%  Similarity=0.143  Sum_probs=72.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhChhh-hhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC
Q 048410            5 VILAAQAGNVDALYELIWEDAYL-LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         5 l~~a~~~g~~~~v~~ll~~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~   83 (151)
                      |..|+...+...+-.|+.+|... ++.+.....|.|+||+||..|+....+.|+.++.+. ..+|..|+|+|.||.+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            55667777777888888887643 122222235789999999999999999999888887 6779999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 048410           84 TQMVLRLIDVDRN   96 (151)
Q Consensus        84 ~~~~~~ll~~~~~   96 (151)
                      .+|+..|+.+|+-
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999988765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.81  E-value=1.5e-09  Score=79.73  Aligned_cols=81  Identities=27%  Similarity=0.349  Sum_probs=72.7

Q ss_pred             CccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCC-CCCCcccc----cCHHHHHHHHHhCCCCcccccccCC
Q 048410           62 SFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHY----GNVDLLYKFLAACPESILQVTIYFP  136 (151)
Q Consensus        62 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~  136 (151)
                      ...++.|..|+++||.++.-+..++++||+.+|.+ +..+|. .|+||||.    |+.+++ ++|...|.....+|++|.
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca-~lLL~~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCA-SLLLSKGRSLRIKDKEGL  120 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHH-HHHHhcCCceEEecccCC
Confidence            33477899999999999999999999999999999 888886 48999997    999999 777778999999999999


Q ss_pred             Cccccccc
Q 048410          137 ILLPFSSK  144 (151)
Q Consensus       137 t~l~~a~~  144 (151)
                      .||.+.+|
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            99998766

>PF13606 Ank_3: Ankyrin repeat

Probab=98.79  E-value=1.2e-08  Score=44.56  Aligned_cols=27  Identities=30%  Similarity=0.478  Sum_probs=23.6

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCc
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSF   63 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~   63 (151)
                      |+||||+|+..|+.+++++|++.|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            789999999999999999999988765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.79  E-value=9.2e-09  Score=71.24  Aligned_cols=85  Identities=19%  Similarity=0.192  Sum_probs=75.0

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----c
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G  112 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~  112 (151)
                      +...+.+|+..|.+..++.+.-.+.+. ..+|++.+|+||.|+.-|+.+++++|++....+++.+|++|.|||.-    +
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            457889999999999999998888887 78899999999999999999999999998665599999999999986    8


Q ss_pred             CHHHHHHHHHh
Q 048410          113 NVDLLYKFLAA  123 (151)
Q Consensus       113 ~~~~~~~ll~~  123 (151)
                      +.+++ .+|++
T Consensus       585 h~~v~-k~L~~  594 (622)
T KOG0506|consen  585 HKEVV-KLLEE  594 (622)
T ss_pred             cHHHH-HHHHH
Confidence            88888 44443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.75  E-value=4.7e-08  Score=69.46  Aligned_cols=88  Identities=22%  Similarity=0.184  Sum_probs=77.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhh-hcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQ-IDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +.||+|+..|+-++|+++++++|..+.+ .+.  .|.|+||-|+..+...++++|++.|++. ...|..|.||-..|-+.
T Consensus       901 sllh~a~~tg~~eivkyildh~p~elld~~de--~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa  977 (1004)
T KOG0782|consen  901 SLLHYAAKTGNGEIVKYILDHGPSELLDMADE--TGETALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQA  977 (1004)
T ss_pred             hHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh--hhhHHHHHHHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhc
Confidence            5699999999999999999999875443 343  3999999999999999999999999987 67899999999999999


Q ss_pred             CCHHHHHHHHhh
Q 048410           82 SHTQMVLRLIDV   93 (151)
Q Consensus        82 ~~~~~~~~ll~~   93 (151)
                      |..++..||-++
T Consensus       978 ~d~dlaayle~r  989 (1004)
T KOG0782|consen  978 GDPDLAAYLESR  989 (1004)
T ss_pred             CCchHHHHHhhh
Confidence            999999888754

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.71  E-value=3.4e-08  Score=44.18  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCc
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSF   63 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~   63 (151)
                      |.||||+|+..++.+++++|++.|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            789999999999999999999988877

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.67  E-value=1.5e-07  Score=66.12  Aligned_cols=86  Identities=27%  Similarity=0.431  Sum_probs=66.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhC-hhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            4 YVILAAQAGNVDALYELIWED-AYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ++|.++...+.+.....+... ...++..+  +.|.||||+|+..|+...++.|+..+++. ..++..|++|||.|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D--~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRD--PPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceecccc--CCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcC
Confidence            478888888887666544443 22334455  34899999999999999999999999887 577999999999999999


Q ss_pred             CHHHHHHHHh
Q 048410           83 HTQMVLRLID   92 (151)
Q Consensus        83 ~~~~~~~ll~   92 (151)
                      +-+++..++.
T Consensus       100 ~~q~i~~vlr  109 (560)
T KOG0522|consen  100 NEQIITEVLR  109 (560)
T ss_pred             CHHHHHHHHH
Confidence            8877655554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=4.9e-07  Score=61.43  Aligned_cols=56  Identities=21%  Similarity=0.220  Sum_probs=34.2

Q ss_pred             hHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccc
Q 048410           40 PLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        40 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~   96 (151)
                      -|..||+.|..+.+++|++.|.++ |..|+...+||.+|+..||..++++|+++|+.
T Consensus        39 elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            344566666666666666655555 55566666666666666666666666666554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.51  E-value=5.3e-07  Score=61.26  Aligned_cols=69  Identities=22%  Similarity=0.259  Sum_probs=56.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      -|..|||.|+.+.|++|++.|-++ +..+.  +..+||.+|+..||.+++|+|+++|+.. ..-...|..++.
T Consensus        39 elceacR~GD~d~v~~LVetgvnV-N~vD~--fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV-NAVDR--FDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHY  107 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc-chhhc--ccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhh
Confidence            378999999999999999988876 55553  4789999999999999999999999876 333455655543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=3.8e-07  Score=64.13  Aligned_cols=85  Identities=26%  Similarity=0.417  Sum_probs=67.9

Q ss_pred             chHHHHHhcCCHHHH-HHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cC
Q 048410           39 TPLHIAASMGHVNFA-LEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GN  113 (151)
Q Consensus        39 t~l~~a~~~~~~~~~-~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~  113 (151)
                      .|+|++......+-. +.+...........|..|.||||.|+..|+...++.|+..+++ +..+|.+|++||+-    ++
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCC
Confidence            458998888755444 4444443333467789999999999999999999999999999 99999999999997    88


Q ss_pred             HHHHHHHHHhC
Q 048410          114 VDLLYKFLAAC  124 (151)
Q Consensus       114 ~~~~~~ll~~~  124 (151)
                      .+++..++...
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            88877776654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.35  E-value=2e-06  Score=61.35  Aligned_cols=83  Identities=19%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             HHHhcCCHHHHHHHHHhCCCc--c-ccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHH
Q 048410           43 IAASMGHVNFALEIMRLKPSF--A-RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVD  115 (151)
Q Consensus        43 ~a~~~~~~~~~~~ll~~~~~~--~-~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~  115 (151)
                      -|........+..|+.+|...  + ..-+.+|+|+||.||+.|+..+.+.|+.+|++ +..+|..|.|+|.|    +..+
T Consensus       630 ~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~sqe  708 (749)
T KOG0705|consen  630 RAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGSQE  708 (749)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcccHH
Confidence            355555667777888887533  1 22355679999999999999999999999999 99999999999999    8888


Q ss_pred             HHHHHHHhCCCC
Q 048410          116 LLYKFLAACPES  127 (151)
Q Consensus       116 ~~~~ll~~~~~~  127 (151)
                      ++..|+. .|+.
T Consensus       709 c~d~llq-~gcp  719 (749)
T KOG0705|consen  709 CIDVLLQ-YGCP  719 (749)
T ss_pred             HHHHHHH-cCCC
Confidence            8855544 4443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.14  E-value=5.2e-06  Score=62.45  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=66.6

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      |.+++|.|+..+....+.+|++.+.+. +..|..|++|+|.+...|+...+..++++++. ..+.+..|.+|+.+
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDI  728 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhH
Confidence            689999999999999999999999886 78899999999999999999999999999888 88999999999888

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.88  E-value=1.1e-05  Score=60.70  Aligned_cols=75  Identities=21%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        69 ~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      ..|.++||.|+..+...+++.|+..|++ ++..+..|.+|+|.    |+.... .++...|++.+..+..|.+|++.|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~-~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIA-CLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchh-hhhccccccccccCccCcchhhHHhh
Confidence            4578999999999999999999999999 99999999999998    888888 44455899999999999999998765


Q ss_pred             c
Q 048410          145 F  145 (151)
Q Consensus       145 ~  145 (151)
                      .
T Consensus       732 ~  732 (785)
T KOG0521|consen  732 A  732 (785)
T ss_pred             h
Confidence            4

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.69  E-value=0.00019  Score=53.72  Aligned_cols=112  Identities=21%  Similarity=0.170  Sum_probs=79.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhh-hhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            4 YVILAAQAGNVDALYELIWEDAYL-LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      .+..|+..|+...|+..++..... .+....++.|.+++++|....+.++...|++.....        ..+|.+|...|
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~   99 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHH
Confidence            467899999999999999886541 122222345999999999999999999998865433        23688888888


Q ss_pred             CHHHHHHHHhhccccccc----------cCCCCCCcccc----cCHHHHHHHHHhC
Q 048410           83 HTQMVLRLIDVDRNLVRV----------QGREGVTPLHY----GNVDLLYKFLAAC  124 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~----------~~~~~~t~l~~----~~~~~~~~ll~~~  124 (151)
                      ..++|+.++..... ...          .=..+.||+.+    .+.+|++.||..+
T Consensus       100 ~v~~VE~ll~~~~~-~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg  154 (822)
T KOG3609|consen  100 SVPLVELLLVHFVD-APYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRG  154 (822)
T ss_pred             HHHHHHHHHhcccc-cchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcC
Confidence            88888888875332 111          11235577776    8888886666643

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.69  E-value=3.2e-05  Score=58.76  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHh-ChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            3 HYVILAAQAGNVDALYELIWE-DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +.+|.++..+..-.+..+++- +... ...+..  +...+|. |..++.+++..++......++.+|..|+||||||+..
T Consensus       576 lllhL~a~~lyawLie~~~e~~~~~~-~eld~d--~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  576 LLLHLLAELLYAWLIEKVIEWAGSGD-LELDRD--GQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             HHHHHHHHHhHHHHHHHHhcccccCc-hhhccc--CCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            345666666666666666653 2211 222221  3344444 4445555544444333333366777888888888888


Q ss_pred             CCHHHHHHHHhhccc
Q 048410           82 SHTQMVLRLIDVDRN   96 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~   96 (151)
                      |+..++..|++.|+.
T Consensus       652 G~e~l~a~l~~lga~  666 (975)
T KOG0520|consen  652 GREKLVASLIELGAD  666 (975)
T ss_pred             CHHHHHHHHHHhccc
Confidence            888888888776665

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.64  E-value=0.00035  Score=43.57  Aligned_cols=66  Identities=21%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             hhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccc
Q 048410           29 DQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        29 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~   96 (151)
                      +.+|.  +|+|++..|+..|..+.+.+|+..|.......|..+.+.+..|-+.|+..++..|.+...+
T Consensus         6 n~rD~--fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    6 NARDA--FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             cchhh--hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            44453  4899999999999999999999988555467788888999999888988888888776444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.46  E-value=0.0004  Score=43.32  Aligned_cols=61  Identities=13%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             cccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhC
Q 048410           64 ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAAC  124 (151)
Q Consensus        64 ~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~  124 (151)
                      ++.+|..|+|+++.|+.-|..+.+.||+.+|+..+...+..+.+.+.+    +..+.+..|-+..
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            367899999999999999999999999999955588999999998887    8888886665543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.34  E-value=0.0011  Score=47.10  Aligned_cols=67  Identities=15%  Similarity=0.069  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhCCCccc-----cCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc-cCHHHH
Q 048410           50 VNFALEIMRLKPSFAR-----KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY-GNVDLL  117 (151)
Q Consensus        50 ~~~~~~ll~~~~~~~~-----~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~-~~~~~~  117 (151)
                      ...+.+|.+.+.+.+.     ..+..-.|+||+|+..|..+++.+|++.|++ +..+|..|.||..+ .+.++-
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~nkdVk  476 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSANKDVK  476 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccccHHHH
Confidence            4556677776655422     1244567899999999999999999999988 89999999999998 555543

>smart00248 ANK ankyrin repeats

Probab=97.31  E-value=0.00061  Score=28.21  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=11.8

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhC
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLK   60 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~   60 (151)
                      +.+++++++..++.++++.+++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.14  E-value=0.0022  Score=48.36  Aligned_cols=84  Identities=14%  Similarity=0.080  Sum_probs=65.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCc---------cccCCCCCCc
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF---------ARKQNQYGFS   73 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~---------~~~~~~~~~t   73 (151)
                      ++++.|+.+.+.+++..|++.+.+.         | -+|..|...|....++.++......         ....-..+.|
T Consensus        64 ~al~iai~nenle~~eLLl~~~~~~---------g-dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~dit  133 (822)
T KOG3609|consen   64 LALHIAIDNENLELQELLLDTSSEE---------G-DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDIT  133 (822)
T ss_pred             hceecccccccHHHHHHHhcCcccc---------c-hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCcc
Confidence            4678888888999999988887653         1 5777889999999998888754321         0122345779


Q ss_pred             HHHHHHhcCCHHHHHHHHhhccc
Q 048410           74 PLHLALQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        74 ~L~~a~~~~~~~~~~~ll~~~~~   96 (151)
                      |+..||..++.+|++.|+.+|+.
T Consensus       134 PliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  134 PLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHhcchHHHHHHHHcCCC
Confidence            99999999999999999999887

>smart00248 ANK ankyrin repeats

Probab=97.07  E-value=0.0016  Score=26.82  Aligned_cols=26  Identities=38%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhhccc
Q 048410           71 GFSPLHLALQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        71 ~~t~L~~a~~~~~~~~~~~ll~~~~~   96 (151)
                      |.+|+++++..++.++++.++..+..
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56777777777777777777776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.97  E-value=0.0025  Score=45.49  Aligned_cols=76  Identities=16%  Similarity=0.038  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhChhhhhhhc---CCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHH
Q 048410           14 VDALYELIWEDAYLLDQID---RVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRL   90 (151)
Q Consensus        14 ~~~v~~ll~~~~~~~~~~~---~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~l   90 (151)
                      .+.+.+|.+.+...+....   ......|+||+|+..|.-+++.+||+.++++ ...|..|.||...+.   +.++-..+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc---cHHHHHHH
Confidence            4456777777655432221   1123579999999999999999999999888 667999999999876   34444444


Q ss_pred             Hhh
Q 048410           91 IDV   93 (151)
Q Consensus        91 l~~   93 (151)
                      +.+
T Consensus       480 ~a~  482 (591)
T KOG2505|consen  480 IAR  482 (591)
T ss_pred             HHH
Confidence            443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.88  E-value=0.0012  Score=50.76  Aligned_cols=85  Identities=16%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHh-CCCccccCCCCCCcHHHHHHhcCCHHHHHHHHh-hccccccccCCCCCCcccc--
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRL-KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID-VDRNLVRVQGREGVTPLHY--  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~--  111 (151)
                      .|++.+|.++..+..-.+..+++. +... ...|..|...+|. |..++.+..-.++. .|.. ++.+|..|+|||+.  
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a-i~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVA-IDIRDRNGWTPLHWAA  649 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccc-cccccCCCCcccchHh
Confidence            378999999999998888888885 4444 3457778888888 55566665544443 4555 89999999999998  


Q ss_pred             --cCHHHHHHHHHh
Q 048410          112 --GNVDLLYKFLAA  123 (151)
Q Consensus       112 --~~~~~~~~ll~~  123 (151)
                        |+..++..|...
T Consensus       650 ~~G~e~l~a~l~~l  663 (975)
T KOG0520|consen  650 FRGREKLVASLIEL  663 (975)
T ss_pred             hcCHHHHHHHHHHh
Confidence              888888777653

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.33  E-value=0.057  Score=35.06  Aligned_cols=93  Identities=10%  Similarity=0.006  Sum_probs=51.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhc--CCHHHHHHHHHhCCCccc---cCCCCCCcHHHHH
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASM--GHVNFALEIMRLKPSFAR---KQNQYGFSPLHLA   78 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~ll~~~~~~~~---~~~~~~~t~L~~a   78 (151)
                      ++-.+...+..+++-+|+..-.-........+.+.--+.++...  ....++++++.+|-...+   +.-..|+|-|..|
T Consensus       182 Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA  261 (284)
T PF06128_consen  182 AMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNA  261 (284)
T ss_pred             HHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhH
Confidence            34445555566666666655321111111111122233333322  356677788877743322   2445688888888


Q ss_pred             HhcCCHHHHHHHHhhccc
Q 048410           79 LQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~   96 (151)
                      ..+++.+++..|+++|+.
T Consensus       262 ~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  262 MKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HhcCcHHHHHHHHHcCcc
Confidence            888888888888888774

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.64  E-value=0.12  Score=27.62  Aligned_cols=46  Identities=13%  Similarity=0.028  Sum_probs=22.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHh
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL   59 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~   59 (151)
                      .+..|+..|+.++++.+++.+. +         ....+..|...-+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~-~---------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNK-P---------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhc-c---------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            3455555555555555554331 1         01335555555555555555553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.10  E-value=0.18  Score=26.86  Aligned_cols=48  Identities=15%  Similarity=0.123  Sum_probs=39.4

Q ss_pred             CchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhh
Q 048410           38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDV   93 (151)
Q Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~   93 (151)
                      ...+..|..+|+.++++.+++.+...        ...+..|....+.++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            46778999999999999998755221        3579999999999999999975

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.91  E-value=2.3  Score=26.98  Aligned_cols=19  Identities=16%  Similarity=0.050  Sum_probs=15.0

Q ss_pred             HHHHHHHHcCCHHHHHHHH
Q 048410            3 HYVILAAQAGNVDALYELI   21 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll   21 (151)
                      +.+..||+..+.++|+++-
T Consensus        78 ~LFElAC~~qkydiV~WI~   96 (192)
T PF03158_consen   78 ELFELACEEQKYDIVKWIG   96 (192)
T ss_pred             HHHHHHHHHccccHHHHHh
Confidence            4567888888888888873

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=84.06  E-value=3.3  Score=27.30  Aligned_cols=52  Identities=13%  Similarity=0.042  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHhChhhhhhh-cCCCCCCchHHHHHhcCCHHHHHHHHHhCCCc
Q 048410           12 GNVDALYELIWEDAYLLDQI-DRVPFVDTPLHIAASMGHVNFALEIMRLKPSF   63 (151)
Q Consensus        12 g~~~~v~~ll~~~~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~   63 (151)
                      .+..++++++++|.-.++.. ...+.|.|-|.-|...+..+.+..|+..|+..
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            35668888999886543332 33456999999999999999999999998754

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=81.13  E-value=9.8  Score=24.26  Aligned_cols=72  Identities=7%  Similarity=-0.030  Sum_probs=47.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      -.+..|+.++...++++.-+....  +..    ..++.+-.||+..+.++++|+-+.-..      .+-.+.+..|....
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~--~~~----~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN--ERY----LNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc--chh----HHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhcc
Confidence            357789999999988887655432  111    246788899999999999999543221      12334556666666


Q ss_pred             CHHH
Q 048410           83 HTQM   86 (151)
Q Consensus        83 ~~~~   86 (151)
                      ..++
T Consensus       116 DlsL  119 (192)
T PF03158_consen  116 DLSL  119 (192)
T ss_pred             chhH
Confidence            6654

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-05
1uoh_A	226	Human Gankyrin Length = 226		1e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 1   MSHYVILAAQAGNVDALYELIWE--DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR 58
           +   +I AA+ GN D + +LI    D    D   R     TPLH AA  GH     EI++
Sbjct: 4   LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGR-----TPLHYAAKEGHK----EIVK 54
Query: 59  L---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           L   K +    ++  G +PLH A +  H ++V  LI    + V  +  +G TPLHY
Sbjct: 55  LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHY 109

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 1   MSHYVILAAQAGNVDALYELIWE--DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR 58
           +   +I AA+ GN D + +L+    D    D   R     TPLH AA  GH     EI++
Sbjct: 4   LGKRLIEAAENGNKDRVKDLLENGADPNASDSDGR-----TPLHYAAENGHK----EIVK 54
Query: 59  L---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHY 111
           L   K +    ++  G +PLH A +N H ++V  L+    D N     GR   TPLHY
Sbjct: 55  LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHY 109

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 1   MSHYVILAAQAGNVDALYELIWE--DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR 58
           +   +I AA+ GN D + +LI    D    D   R     TPLH AA  GH     E+++
Sbjct: 4   LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGR-----TPLHHAAENGH----KEVVK 54
Query: 59  L---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           L   K +    ++  G +PLH A +N H ++V  LI    + V  +  +G TPLH+
Sbjct: 55  LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHH 109

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
           +   ++ AA+AG  D +  L+   A + +  D+  +  TPLH+AA  GH+   +E++   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGY--TPLHLAAREGHLEI-VEVLLKA 57
Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
            +    +++ G++PLHLA +  H ++V  L+    + V  + ++G TPLH
Sbjct: 58  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLH 106

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
           +   ++ AA+AG  D +  L+   A + +  D+  +  TPLH+AA  GH+   +E++   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGY--TPLHLAAREGHLEI-VEVLLKA 69
Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
            +    +++ G++PLHLA +  H ++V  L+    + V  + ++G TPLH
Sbjct: 70  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLH 118

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
           +   ++ AA+AG  D +  L+   A + +  D+  +  TPLH+AA  GH+   +E++   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGY--TPLHLAAREGHLEI-VEVLLKA 57
Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
            +    +++ G++PLHLA +  H ++V  L+    + V  + ++G TPLH
Sbjct: 58  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLH 106

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLH+AA  GH+   +E++    +     + YG +PLHLA  N H ++V  L+    + V
Sbjct: 49  TPLHLAAKTGHLEI-VEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD-V 106
Query: 99  RVQGREGVTPLH 110
             +  EG TPLH
Sbjct: 107 NAKDYEGFTPLH 118

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR--LKPSFA 64
           +AA+AG+ +    L+   A +     +     TPLH AA +GH N    ++     P+ A
Sbjct: 53  MAARAGHTEVAKYLLQNKAKV---NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 65  RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNV 114
                 G +PLH+A +  H + VL L++ + +   +  ++G TPLH    YG V
Sbjct: 110 ---TTAGHTPLHIAAREGHVETVLALLEKEASQACMT-KKGFTPLHVAAKYGKV 159

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 11/107 (10%)
Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPSF 63
           LAA+ G+++ + +L+ E    ++  D+     TPLH+AA  GH    LE+++L     + 
Sbjct: 8   LAARNGHLE-VVKLLLEAGADVNAKDKNGR--TPLHLAARNGH----LEVVKLLLEAGAD 60
Query: 64  ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
              +++ G +PLHLA +N H ++V  L++   + V  + + G TPLH
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLH 106

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL- 59
           +   +I AA+ GN D + +L+ E+   ++  D      TPLH+AA  GH     E+++L 
Sbjct: 4   LGKRLIEAAENGNKDRVKDLL-ENGADVNASDSDGK--TPLHLAAENGHK----EVVKLL 56
Query: 60  --KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLH 110
             + +    ++  G +PLHLA +N H ++V  L+    D N    +  +G TPLH
Sbjct: 57  LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLH 108

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
           AA+AG  D +  LI   A + + +D      TPLH+AA  GH+   +E++    +     
Sbjct: 21  AARAGQDDEVRILIANGADV-NAVDNTGL--TPLHLAAVSGHLEI-VEVLLKHGADVDAA 76
Query: 68  NQYGFSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLH 110
           + YGF+PLHLA    H ++V  L+    D N   + G    TPLH
Sbjct: 77  DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS---TPLH 118

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           TPLH+AA  GH    LE+++L     +    +++ G +PLHLA +N H ++V  L++   
Sbjct: 4   TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 96  NLVRVQGREGVTPLH 110
           + V  + + G TPLH
Sbjct: 60  D-VNAKDKNGRTPLH 73

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9   AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
           A +G +D L E I  D  L  + D+     T LH A S GH      +++L      K +
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 69  QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             G+SPLH+A      ++V  L+ V    V    + G TPLHY
Sbjct: 72  A-GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHY 112

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
           +   ++ AA+AG  D +  L+   A +    D+     TPLH+AA +GH    +E++   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS---TPLHLAAWIGHPEI-VEVLLKH 69
Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
            +    ++  G++PLHLA  N H ++V  L+    + V  Q   G+TPLH
Sbjct: 70  GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLH 118

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9   AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
           A +G +D L E I  D  L  + D+     T LH A S GH      +++L      K +
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 69  QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             G+SPLH+A      ++V  L+ V    V    + G TPLHY
Sbjct: 72  A-GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHY 112

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 38  DTPLHIAASMGHVNFALEIMRL--KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           +TPLH AA  GH   A E+ +L  K +    +++ G +PLHLA +N H ++V +L+    
Sbjct: 10  NTPLHNAAKNGH---AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 96  NLVRVQGREGVTPLH 110
             V  + ++G TP H
Sbjct: 66  ADVNARSKDGNTPEH 80

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 38  DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
           DTPLH+AA  GH+   +E++    +     + YGF+PLHLA    H ++V  L+    + 
Sbjct: 81  DTPLHLAALYGHLEI-VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD- 138
Query: 98  VRVQGREGVT----PLHYGNVDL 116
           V  Q + G T     +  GN DL
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDL 161

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9   AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
           A +G ++ L E I  D  L  + D+     T LH A S GH      +++L      K +
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 69  QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             G+SPLH+A      ++V  L+     +  V  + G TPLHY
Sbjct: 72  A-GWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHY 112

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9   AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
           A +G ++ L E I  D  L  + D+     T LH A S GH      +++L      K +
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 69  QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             G+SPLH+A      ++V  L+     +  V  + G TPLHY
Sbjct: 73  A-GWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHY 113

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
           AA+AG  D +  L+   A + +  D   +  TPLH+AAS GH+   +E++    +     
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDNDGY--TPLHLAASNGHLEI-VEVLLKNGADVNAS 76
Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLYKFL 121
           +  G +PLHLA    H ++V  L+    + V     +G TPLH    YG+++++   L
Sbjct: 77  DLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
           +   ++ AA+AG  D +  L+   A + +  D V +  TPLH+AA  GH+   +E++   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NASDHVGW--TPLHLAAYFGHLEI-VEVLLKN 69
Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
            +     +  G +PLHLA    H ++V  L+    + V      G TPLH
Sbjct: 70  GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLH 118

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD-TPLHIAASMGHVNFALEIMRL 59
           +   ++ AA+AG  D +  L+   A     ++   F   TPLH+AA  GH+   +E++  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGA----DVNARDFTGWTPLHLAAHFGHLEI-VEVLLK 68
Query: 60  KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
             +    ++  G +PLHLA +  H ++V  L+    + V      G TPLH
Sbjct: 69  NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLH 118

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
           +   ++ AA+AG  D +  L+   A   D      + DTPLH+AA +GH+   +E++   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGA---DVNAEDTYGDTPLHLAARVGHLEI-VEVLLKN 69
Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
            +     +  G +PLHLA +  H ++V  L+    + V      G TPLH
Sbjct: 70  GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLH 118

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLH+AA  GH+   +E++    +     + +G++PLHLA    H ++V  L+    + V
Sbjct: 49  TPLHLAAYSGHLEI-VEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-V 106
Query: 99  RVQGREGVTPLH 110
                +G+TPLH
Sbjct: 107 NAMDSDGMTPLH 118

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 8   AAQAGNVDALYELI--WEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
           AA+AG  D +  L+    DA   D   R     TPLH+AA++GH+   +E++    +   
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGR-----TPLHMAAAVGHLEI-VEVLLRNGADVN 62
Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
             +  G +PLHLA    H ++V  L+    + V  +   G+TPL+
Sbjct: 63  AVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLY 106

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 39  TPLHIAASMGHVNFALEIMR--LKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
           TPLH A   GH++  +++M+    PS    +   G S +HLA Q  HT +V  LI   ++
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGE---GCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 97  LVRVQGREGVTPLHY 111
            V +  + G+TPL +
Sbjct: 135 -VDMMDQNGMTPLMW 148

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
           +   ++ AA+AG  D +  L+   A + +  D V +  TPLH+AA  GH+   +E++   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADV-NAADVVGW--TPLHLAAYWGHLEI-VEVLLKN 69
Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLH 110
            +     +  G +PLHLA    H ++V  L+   +N   V  ++  G+TPLH
Sbjct: 70  GADVNAYDTLGSTPLHLAAHFGHLEIVEVLL---KNGADVNAKDDNGITPLH 118

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLH+AA+ G +   +E++    +     +  G +PLHLA  + H ++V  L+    + V
Sbjct: 41  TPLHLAAANGQLEI-VEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-V 98
Query: 99  RVQGREGVTPLH 110
               R G TPLH
Sbjct: 99  NAYDRAGWTPLH 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-10
2pnn_A	273	Transient receptor potential cation channel subfa	8e-09
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
2pnn_A	273	Transient receptor potential cation channel subfa	6e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	8e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 38  DTPLHIAASMGHVNFALEIMRLKPS---FARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           D+ LH+A         +E++R       F   QN    +PLHLA+  +  ++   L+   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 95  RNLVRVQGREGVTPLHY 111
            +   ++   G TPLH 
Sbjct: 69  CD-PELRDFRGNTPLHL 84

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 38  DTPLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           +TPLH+A   G     L  + +           S  +  N  G + LHLA  + +  +V 
Sbjct: 79  NTPLHLACEQGC----LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 89  RLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFL 121
            L+ +  ++   +   G T LH      N DL+   L
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV-SLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 25/120 (20%), Positives = 35/120 (29%), Gaps = 25/120 (20%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVD----TPLHIAASMGHVNFALEIMRL--- 59
           LA          E+I     +   +  + F +    TPLH+A          EI      
Sbjct: 14  LAIIHEEKALTMEVI---RQVKGDLAFLNFQNNLQQTPLHLAVITNQ----PEIAEALLG 66

Query: 60  ---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQG-----REGVTPLHY 111
               P     ++  G +PLHLA +      V  L                   G T LH 
Sbjct: 67  AGCDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.4 bits (124), Expect = 8e-09
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 39  TPLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGFSPLHLALQNSHTQMVLR 89
           T LH+A+  G+    L I+ L               ++   G + LHLA+   +  +V  
Sbjct: 119 TCLHLASIHGY----LGIVELLVSLGADVNA-----QEPCNGRTALHLAVDLQNPDLVSL 169

Query: 90  LIDVDRNLVRVQGREGVTPLHY 111
           L+    + V     +G +P   
Sbjct: 170 LLKCGAD-VNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 7   LAAQAGNVDALYELIWEDAYL--LDQIDRVPFVDTPLHIAASMGHVNFALEIMRL----- 59
           LA+  G +  +  L+   A +   +  +      T LH+A  + +     +++ L     
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNG----RTALHLAVDLQN----PDLVSLLLKCG 174

Query: 60  -KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI----DVDRNLVRVQGREGVTPLHY 111
              +   +    G+SP  L      T++  +L     +  + L      E      Y
Sbjct: 175 ADVN---RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML-----PESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 13/54 (24%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLI--------DVDRNLVRVQGREGVTPLHY 111
           +  + G S LHLA+ +    + + +I         ++      Q     TPLH 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-----FQNNLQQTPLHL 51

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 5   VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA 64
           V  A          EL  E+    D I      DT      S G          +  ++ 
Sbjct: 16  VFRALYTFEPRTPDELYIEEG---DIIYITDMSDTNWWKGTSKGRTG------LIPSNYV 66

Query: 65  RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
            +Q +   +PLH A +  +   +   +D     V    + G T L++
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYW 112

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 7   LAAQAGNVDALYELIWEDAYL--LDQIDRVPFVDTPLHIAASMGHVNFALEIMR--LKPS 62
            AA+ GN+  L E +     +  LD+        T L+ A   GH     +I+       
Sbjct: 79  EAAKRGNLSWLRECLDNRVGVNGLDKAGS-----TALYWACHGGH----KDIVEMLFTQP 129

Query: 63  FAR--KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
                +QN+ G + LH A    +  +V  L+        ++  E       
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 38  DTPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           DT LH AA  G+     +I++L      +      +N        +A   +   ++ +  
Sbjct: 141 DTALHAAAWKGY----ADIVQLLLAKGARTD---LRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 92  DVDRNLVRVQGREGVTPLHY 111
             D     +   E       
Sbjct: 194 GTDAV-RTLSNAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLL 117
           K  + G   +  AL     +    L   + +++ +      T        G   L+
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYIT-DMSDTNWWKGTSKGRTGLI 61

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.0 bits (144), Expect = 6e-12
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
              A  G +D L E + +   L+++ D      TPL  A++ G     +E +R       
Sbjct: 7   HQLAAQGELDQLKEHLRKGDNLVNKPDE--RGFTPLIWASAFGE----IETVRFLLEWGA 60

Query: 60  KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
            P       +   S L LA    +T +V  L++ D + + +    G TPL Y
Sbjct: 61  DPH---ILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 56.7 bits (138), Expect = 5e-11
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           + L +A++ G+     +I+ L        +     +  G +PL  A++ +H + V  L+ 
Sbjct: 71  SALSLASTGGY----TDIVGLLLERDVDIN---IYDWNGGTPLLYAVRGNHVKCVEALLA 123

Query: 93  VDRNLVRVQGREGVTPLHY 111
              + +  +   G TP+  
Sbjct: 124 RGAD-LTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 55.5 bits (135), Expect = 1e-10
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
             +H  A+ G     L+ ++       +   K ++ GF+PL  A      + V  L++  
Sbjct: 4   LSIHQLAAQGE----LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 95  RNLVRVQGREGVTPLHY 111
            +   +  +E  + L  
Sbjct: 60  AD-PHILAKERESALSL 75

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPL  A    H    ++ +          +    +   G++P+ LA+   + ++   + +
Sbjct: 104 TPLLYAVRGNH----VKCVEALLARGADLT---TEADSGYTPMDLAVALGYRKVQQVIEN 156

Query: 93  VDRNLVRVQGREGVTP 108
                +         P
Sbjct: 157 HILK-LFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 8/41 (19%), Positives = 12/41 (29%)

Query: 71  GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
               +H          +   +    NLV      G TPL +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW 42

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 6e-12
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           TPLHIAA        +E+ R        A  ++  G +PLHLA Q  H +MV  L+    
Sbjct: 214 TPLHIAAKQNQ----VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269

Query: 96  NLVRVQGREGVTPLHY 111
           N   +  + G+TPLH 
Sbjct: 270 N-GNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.3 bits (142), Expect = 5e-11
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 21/120 (17%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
            +AA+AG+ +    L+   A + +   +     TPLH AA +GH      +++L      
Sbjct: 52  HMAARAGHTEVAKYLLQNKAKV-NAKAK--DDQTPLHCAARIGH----TNMVKLLLENNA 104

Query: 60  KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVD 115
            P+        G +PLH+A +  H + VL L++ + +      ++G TPLH    YG V 
Sbjct: 105 NPN---LATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVR 160

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 21/97 (21%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+A+  G+    +++++         +    + + G+SPLH A Q  HT +V  L+ 
Sbjct: 313 TPLHVASHYGN----IKLVKFLLQHQADVN---AKTKLGYSPLHQAAQQGHTDIVTLLLK 365

Query: 93  VDRNLVRVQGREGVTPLHY----GN---VDLLYKFLA 122
              +       +G TPL      G     D+L     
Sbjct: 366 NGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 16/123 (13%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPS 62
            +AA+   V+    L+       +         TPLH+AA  GH     E++ L   K +
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSA-NAESV--QGVTPLHLAAQEGH----AEMVALLLSKQA 269

Query: 63  FARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLY 118
                N+ G +PLHL  Q  H  +   LI      V    R G TPLH    YGN+ L+ 
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLV- 327

Query: 119 KFL 121
           KFL
Sbjct: 328 KFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 18/87 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+A+ MGH    L I++        P+     N    +PLH+A +  HT++   L+ 
Sbjct: 16  TPLHVASFMGH----LPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 93  VDRNLVRVQGREGVTPLHY----GNVD 115
                V  + ++  TPLH     G+ +
Sbjct: 69  NKAK-VNAKAKDDQTPLHCAARIGHTN 94

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 19/93 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLHIAA  GH    +E +          +      + GF+PLH+A +    ++   L++
Sbjct: 115 TPLHIAAREGH----VETVLALLEKEASQA---CMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 93  VDRNLVRVQGREGVTPLH----YGNVDLLYKFL 121
            D +     G+ G+TPLH    + N+D++ K L
Sbjct: 168 RDAH-PNAAGKNGLTPLHVAVHHNNLDIV-KLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.8 bits (133), Expect = 9e-10
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+AA  G     + +  L       P+      + G +PLH+A+ +++  +V  L+ 
Sbjct: 148 TPLHVAAKYGK----VRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLP 200

Query: 93  VDRNLVRVQGREGVTPLHY 111
              +        G TPLH 
Sbjct: 201 RGGS-PHSPAWNGYTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 19/93 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+A    +    L+I++L       P         G++PLH+A + +  ++   L+ 
Sbjct: 181 TPLHVAVHHNN----LDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQ 233

Query: 93  VDRNLVRVQGREGVTPLHY----GNVDLLYKFL 121
              +    +  +GVTPLH     G+ +++   L
Sbjct: 234 YGGS-ANAESVQGVTPLHLAAQEGHAEMV-ALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.5 bits (127), Expect = 5e-09
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           TPLH+ A  GH    + +  +            + G++PLH+A    + ++V  L+    
Sbjct: 280 TPLHLVAQEGH----VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335

Query: 96  NLVRVQGREGVTPLHY 111
           + V  + + G +PLH 
Sbjct: 336 D-VNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
              + G +PLH+A    H  +V  L+    +   V   +  TPLH 
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHM 53

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 19/83 (22%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI- 91
           T LH+A    H       +           +   QN  G + LHLA        V +L  
Sbjct: 11  TALHLAVIHQH----EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 92  ---DVDRNLVRVQGREGVTPLHY 111
               V      V  R G T LH 
Sbjct: 67  AGAGVL-----VAERGGHTALHL 84

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI- 91
           TPLH+A           ++ L       P+    +   G +PL  AL   +  +   L  
Sbjct: 194 TPLHLAVEAQA----ASVLELLLKAGADPT---ARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 92  ---DVDRNLVRVQGREGVTPLHY 111
                        G + ++P   
Sbjct: 247 HGAPEPE-----DGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           TPLH+A          E++RL         + +   G +PLHLA++     ++  L+   
Sbjct: 160 TPLHVAVIHKD----AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215

Query: 95  RNLVRVQGREGVTPLHY 111
            +    +   G TPL  
Sbjct: 216 AD-PTARMYGGRTPLGS 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 10/115 (8%)

Query: 7   LAAQAGNVDALYELI---------WEDAYLLDQIDRVP-FVDTPLHIAASMGHVNFALEI 56
           LA +         L+           D YL    D  P     P  + +     N     
Sbjct: 84  LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 57  MRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
                     +N  G +PLH+A+ +   +MV  L D   +L + +   G TPLH 
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 14/80 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH+AA +G        +                 + G + LHLA +         L+ 
Sbjct: 47  TALHLAAILGE----ASTVEKLYAAGAGVL---VAERGGHTALHLACRVRAHTCACVLLQ 99

Query: 93  VDRNLVRVQGREGVTPLHYG 112
              +       +        
Sbjct: 100 PRPS-HPRDASDTYLTQSQD 118

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 13/55 (23%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMV 87
           TPL  A    +      + RL            +      SP   +  +S +   
Sbjct: 227 TPLGSALLRPN----PILARLLRAHGAPEP---EDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHY 111
             + G + LHLA+ + H   +  L+        + +Q   G T LH 
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL 51

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.7 bits (138), Expect = 5e-11
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF-A 64
               + GN  A+   +      L+Q D   F  +PLH A   G       ++ +     A
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACREGR----SAVVEMLIMRGA 63

Query: 65  R--KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           R    N+   +PLHLA  + H  +V +L+    + +      G  PLHY
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHY 111

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 38  DTPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           DTPLH+AAS GH     +I++         +     N++G  PLH A      Q+   L+
Sbjct: 73  DTPLHLAASHGH----RDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQDQVAEDLV 125

Query: 92  DVDRNLVRVQGREGVTPLHY 111
                 V +  + G  P+  
Sbjct: 126 ANGAL-VSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 51.7 bits (125), Expect = 4e-09
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
             +      G+       +    +   + + +GFSPLH A +   + +V  LI      +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-I 65

Query: 99  RVQGREGVTPLHY 111
            V  R   TPLH 
Sbjct: 66  NVMNRGDDTPLHL 78

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 13/60 (21%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            PLH A   G      ++           S     N+YG  P+  A       +  R   
Sbjct: 107 VPLHYACFWGQ----DQVAEDLVANGALVS---ICNKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 71  GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
               +    +  +   V   +D   N +      G +PLH+
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHW 45

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.1 bits (134), Expect = 6e-11
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           TPLH+AA  GH     EI++L              +++ G +P HLA +N H ++V  L 
Sbjct: 44  TPLHLAAKNGH----AEIVKLLLAKGADV----NARSKDGNTPEHLAKKNGHHEIVKLLD 95

Query: 92  DVDRNLVRVQGREGVTPLHY 111
               + V  +        H+
Sbjct: 96  AKGAD-VNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.8 bits (128), Expect = 5e-10
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF-ARK--QNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           TPLH AA  GH     E ++   S  A    +++ G +PLHLA +N H ++V  L+    
Sbjct: 11  TPLHNAAKNGH----AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 96  NLVRVQGREGVTPLHY 111
           + V  + ++G TP H 
Sbjct: 67  D-VNARSKDGNTPEHL 81

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 39.7 bits (94), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 64  ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
               ++ G +PLH A +N H + V +L+    + V  + ++G TPLH 
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHL 48

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 28/125 (22%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
           +L   A   D+L + +           +     T LHIA    +    + ++ L      
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQ-----TALHIAIERRN----MTLVTLLVENGA 125

Query: 60  -----------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL--VRVQGREGV 106
                      K +  R    +G  PL LA   +   +V  L+        +  +   G 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 107 TPLHY 111
           T LH 
Sbjct: 186 TVLHA 190

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 27/96 (28%)

Query: 39  TPLHIAASMGH------------VNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSH 83
           T LH    +               N  L +              N+ G +PL LA  +  
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 84  TQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVD 115
             ++  ++  + +             H    + +  
Sbjct: 246 IGVLAYILQREIH--------EPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.4 bits (118), Expect = 6e-08
 Identities = 26/138 (18%), Positives = 39/138 (28%), Gaps = 33/138 (23%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD-----TPLHIAASMGHVNFALEIMRLK 60
             A    N   L  L+        ++    F D     T L  A    H     + + L 
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ-NDTIALL 76

Query: 61  PSFARK--------------QNQYGFSPLHLALQNSHTQMVLRLI----DVD-------- 94
              ARK                  G + LH+A++  +  +V  L+    DV         
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 95  -RNLVRVQGREGVTPLHY 111
            +   R     G  PL  
Sbjct: 137 KKTKGRPGFYFGELPLSL 154

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 25/103 (24%)

Query: 29  DQIDRVPFVDTPLHIAASMGHV-NFALEIMRLKPSFAR------KQNQYGFSPLHLALQN 81
              DR       +  A +  +       +  L+ S  R      K  + G + L  A+ N
Sbjct: 10  RLYDR-----RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 82  S---HTQMVLRLIDVDRNL----------VRVQGREGVTPLHY 111
                   +  L+DV R                  +G T LH 
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.3 bits (137), Expect = 1e-10
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH A   GH    L ++         PS     +  G S +HLA Q  HT +V  LI 
Sbjct: 78  TPLHWATRQGH----LSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIA 130

Query: 93  VDRNLVRVQGREGVTPLHY 111
             ++ V +  + G+TPL +
Sbjct: 131 KGQD-VDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           T LH AA        +++++          +       +PLH A +  H  MV++L+   
Sbjct: 44  TLLHWAAINNR----IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99

Query: 95  RNLVRVQGREGVTPLHY 111
            +   +   EG + +H 
Sbjct: 100 AD-PSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.4 bits (127), Expect = 4e-09
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 25/117 (21%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQ---IDRVPFVD----TPLHIAASMGHVNFALEIMR 58
            LAAQ G+   +       AYL+ +   +D +   D    TPL  AA   H   +++  R
Sbjct: 114 HLAAQFGHTSIV-------AYLIAKGQDVDMM---DQNGMTPLMWAAYRTH---SVDPTR 160

Query: 59  L----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           L      S       +  + LH A+   +T ++  L++   N V  Q  +G + L  
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.1 bits (126), Expect = 5e-09
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 13/79 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
             +  A   G      E  R            R+ ++   + LH A  N+   +V   I 
Sbjct: 11  WDIVKATQYGI----YERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYIS 63

Query: 93  VDRNLVRVQGREGVTPLHY 111
               + ++ G    TPLH+
Sbjct: 64  KGAIVDQLGGDLNSTPLHW 82

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 13/64 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH A   G+      ++ L             QN  G S L LA Q  +  M+  L +
Sbjct: 179 TALHWAVLAGN----TTVISLLLEAGANVD---AQNIKGESALDLAKQRKNVWMINHLQE 231

Query: 93  VDRN 96
             + 
Sbjct: 232 ARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             + Y    +  A Q    +    L++   + VR   +E VT LH+
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHW 48

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
           + AA+  ++  + + +  +        +    +T LH A +  H     ++  L      
Sbjct: 183 LQAAREADLAKVKKTLALEI---INFKQPQSHETALHCAVASLHPK-RKQVAELLLRKGA 238

Query: 60  KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             +   ++N+   +PLH+A + +H  ++  L       +      G T LH 
Sbjct: 239 NVN---EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHR 286

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.2 bits (134), Expect = 6e-10
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 20/89 (22%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+AA   H     ++M +      K +     +  G + LH A    H Q    L+ 
Sbjct: 249 TPLHVAAERAH----NDVMEVLHKHGAKMN---ALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 93  --VDRNLVRVQGREGVTPLHYG--NVDLL 117
              D +   +   +G T    G   V  +
Sbjct: 302 YGSDPS---IISLQGFTAAQMGNEAVQQI 327

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 9e-09
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            PLH A S GH     E+  L        +     + + F+PLH A   +  ++   L+ 
Sbjct: 93  VPLHNACSYGH----YEVTELLLKHGACVN---AMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 93  VDRNLVRVQGREGVTPLHY 111
              +   +    G + +  
Sbjct: 146 HGAD-PTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 28/92 (30%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH AAS       +E+  L       P+     N +G S + +A      + +     
Sbjct: 126 TPLHEAASKNR----VEVCSLLLSHGADPT---LVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 93  VDRNLVRVQGREGVTPLHY---GNVDLLYKFL 121
                       G + L      ++  + K L
Sbjct: 179 ------------GHSLLQAAREADLAKVKKTL 198

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           TPLH+AA        + I++L     +    +++ G  PLH A    H ++   L+    
Sbjct: 60  TPLHLAAGYNR----VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115

Query: 96  NLVRVQGREGVTPLHY 111
             V        TPLH 
Sbjct: 116 C-VNAMDLWQFTPLHE 130

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.3 bits (111), Expect = 6e-07
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI----DVD 94
             L  AA  G+    + ++          +    +PLHLA   +  ++V  L+    DV 
Sbjct: 26  DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85

Query: 95  RNLVRVQGREGVTPLHY 111
                 + + G+ PLH 
Sbjct: 86  -----AKDKGGLVPLHN 97

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDV--DRN 96
            PLH A          E++  KPS   +++Q G  PLH ++     ++   L+    + N
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 97  LVRVQGREGVTPLHY 111
           L       G TP H 
Sbjct: 64  LDDYPDDSGWTPFHI 78

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH+A          E+ +            R ++++   PLH A      +++  L  
Sbjct: 109 TCLHLAVGKKW----FEVSQFLIENGASV---RIKDKFNQIPLHRAASVGSLKLIELLCG 161

Query: 93  VDRNLVRVQGREGVTPLHY 111
           + ++ V  Q ++G TPL +
Sbjct: 162 LGKSAVNWQDKQGWTPLFH 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFA--RKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
           TP HIA S+G+    LE+++    +P      K    G + LHLA+     ++   LI+ 
Sbjct: 74  TPFHIACSVGN----LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129

Query: 94  DRNLVRVQGREGVTPLHY 111
             + VR++ +    PLH 
Sbjct: 130 GAS-VRIKDKFNQIPLHR 146

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            PLH + S        EI           +     +  G++P H+A    + ++V  L D
Sbjct: 38  IPLHWSVSFQA----HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93

Query: 93  VDRNL-VRVQGREGVTPLHY 111
                 +     +GVT LH 
Sbjct: 94  RPLKPDLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.1 bits (126), Expect = 5e-09
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID-- 92
            PLH AAS+G     L+++ L      S    Q++ G++PL  AL   H    + L++  
Sbjct: 142 IPLHRAASVGS----LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197

Query: 93  -VDRNLVRVQGREGVTPLHY 111
             + +   +   +G      
Sbjct: 198 GAEYD---LVDNKGAKAEDV 214

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.9 bits (131), Expect = 2e-10
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 20/82 (24%)

Query: 39  TPLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
            PLH AA  G     LEI+                 +++  +PL  A+   H   V  L+
Sbjct: 42  KPLHYAADCGQ----LEILEFLLLKGADI----NAPDKHHITPLLSAVYEGHVSCVKLLL 93

Query: 92  DV--DRNLVRVQGREGVTPLHY 111
               D+    V+G +G+T    
Sbjct: 94  SKGADKT---VKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.3 bits (119), Expect = 1e-08
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 16/81 (19%)

Query: 38  DTPLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGFSPLHLALQNSHTQMVLRL 90
           D     A   G     L+ ++              +  + G  PLH A      +++  L
Sbjct: 8   DKEFMWALKNGD----LDEVKDYVAKGEDV----NRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 91  IDVDRNLVRVQGREGVTPLHY 111
           +    + +    +  +TPL  
Sbjct: 60  LLKGAD-INAPDKHHITPLLS 79

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 39.3 bits (93), Expect = 6e-05
 Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 13/55 (23%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMV 87
           TPL  A   GH    +  ++L        +    +   G +        +   ++
Sbjct: 75  TPLLSAVYEGH----VSCVKLLLSKGADKT---VKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
                     AL+N     V   +    + V      G  PLHY
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHY 46

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.7 bits (133), Expect = 2e-10
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
             +H  A+ G     +  +          +     ++ GF+PL  A  +    +V  L+ 
Sbjct: 5   LSVHQLAAQGE----MLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 93  VDRNLVRVQGREGVTPLHY 111
              +  ++ G+   + L  
Sbjct: 58  NGAD-PQLLGKGRESALSL 75

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.3 bits (132), Expect = 3e-10
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 21/114 (18%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD--TPLHIAASMGHVNFALEIMRL---- 59
              A  G +  L   I ++  + +  D     +  TPL  AA+ G     + ++      
Sbjct: 8   HQLAAQGEMLYLATRIEQENVI-NHTDE----EGFTPLMWAAAHGQ----IAVVEFLLQN 58

Query: 60  --KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
              P       +   S L LA    +T +V  L+D   + V      G TPL Y
Sbjct: 59  GADPQ---LLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.2 bits (129), Expect = 8e-10
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           + L +A S G+     +I+++        +   + +  G +PL  A+  +H + V  L++
Sbjct: 71  SALSLACSKGY----TDIVKMLLDCGVDVN---EYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 93  VDRNLVRVQGREGVTPLHY 111
              +   ++   G   +  
Sbjct: 124 SGAD-PTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.6 bits (112), Expect = 2e-07
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 17/68 (25%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI- 91
           TPL  A    H    ++ +++       P+    +   G++ + LA+   +  +   +  
Sbjct: 104 TPLLYAVHGNH----VKCVKMLLESGADPT---IETDSGYNSMDLAVALGYRSVQQVIES 156

Query: 92  ---DVDRN 96
               + +N
Sbjct: 157 HLLKLLQN 164

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 38  DTPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
              L  A      +    I  L     +    + + G +PL LA++  H  +V RL++ +
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 95  RNLVRVQGREGVTPLHY 111
              +     +G T L  
Sbjct: 243 HIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 22/88 (25%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI- 91
           TP  +AA  G     +++++L        +   + + YGF+    A      + +  L  
Sbjct: 74  TPFLLAAIAGS----VKLLKLFLSKGADVN---ECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 92  --------DVDRNLVRVQGREGVTPLHY 111
                      +       + G T L  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMD 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.1 bits (126), Expect = 7e-09
 Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 20/121 (16%)

Query: 6   ILAAQAGNVDALYELI-------WEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR 58
           + AA  G V AL  L               DQ        T L  AA  GH    +E+++
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH----VEVLK 165

Query: 59  --LKPSFAR--KQNQYGFSPLHLALQNSHTQMVLR----LIDVDRNLVRVQGREGVTPLH 110
             L    A     +  G + L  AL +S    V      L+D   + V V+G  G TPL 
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLI 224

Query: 111 Y 111
            
Sbjct: 225 L 225

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 23/89 (25%)

Query: 39  TPLHIAASMGHVNFALEIMRL-------------KPSFARKQNQYGFSPLHLALQNSHTQ 85
           T    AA  G     ++ ++                    +  + G + L  A +  H +
Sbjct: 107 TAFMEAAVYGK----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

Query: 86  MVLRLID---VDRNLVRVQGREGVTPLHY 111
           ++  L+D    D N        G   L +
Sbjct: 163 VLKILLDEMGADVN---ACDNMGRNALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH A  M       +I+ L       P     + + G +P  LA      +++   + 
Sbjct: 41  TPLHNAVQMSR----EDIVELLLRHGADPV---LRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 93  VDRNLVRVQGREGVTPLHY 111
              + V      G T    
Sbjct: 94  KGAD-VNECDFYGFTAFME 111

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 38  DTPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
           +  L  A         +++++       +   ++ + G++PLH A+Q S   +V  L+  
Sbjct: 6   NHLLIKAVQNED----VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 94  DRNLVRVQGREGVTPLHY 111
             +   ++ + G TP   
Sbjct: 62  GAD-PVLRKKNGATPFLL 78

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 21/98 (21%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQ---IDRVPFVD----TPLHIAASMGHVNFALEIMR 58
           I A  + +   +  +      LLD    ++          TPL +A    H    L +++
Sbjct: 187 IHALLSSDDSDVEAITH---LLLDHGADVNVR---GERGKTPLILAVEKKH----LGLVQ 236

Query: 59  LKPSFAR----KQNQYGFSPLHLALQNSHTQMVLRLID 92
                        +  G + L LA++    ++   L  
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.0 bits (131), Expect = 3e-10
 Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 30/95 (31%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFAR----------KQNQYGFSPLHLALQNSHTQMVL 88
           TPLH A + GH    L++                          SPLH A +N H  +V 
Sbjct: 45  TPLHEACNHGH----LKV-------VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVK 93

Query: 89  RLIDV--DRNLVRVQGREGVTPLHY----GNVDLL 117
            L+     RN        G+ P+ Y        LL
Sbjct: 94  LLLSYGASRN---AVNIFGLRPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 53.2 bits (129), Expect = 4e-10
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LHIA+  G     +  +         P+    ++  G++PLH A  + H ++V  L+ 
Sbjct: 12  TLLHIASIKGD----IPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 93  VDRNLVRVQGREGVTPLHY 111
                V   G +  +PLH 
Sbjct: 65  HKAL-VNTTGYQNDSPLHD 82

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 1e-07
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 38  DTPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           D+PLH AA  GH    ++I++L        +     N +G  P+      S   ++L   
Sbjct: 77  DSPLHDAAKNGH----VDIVKLLLSYGASRN---AVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           N  G + LH+A        V  L+    +   V+   G TPLH 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHE 49

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.7 bits (133), Expect = 6e-10
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
             LH AA  G     ++I  +              N +G SPLH+A + +    V+  + 
Sbjct: 146 ICLHWAAFSGC----VDIAEILLAAKCDLH---AVNIHGDSPLHIAARENRYDCVVLFLS 198

Query: 93  VDRNLVRVQGREGVTPLHY 111
            D + V ++ +EG TPL  
Sbjct: 199 RDSD-VTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           T LH+AA  GH     E+++            Q+  G++P+  A +  H  +V  L+   
Sbjct: 79  TCLHLAAKKGH----YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134

Query: 95  RNLVRVQGREGVTPLHY 111
            + + ++  E    LH+
Sbjct: 135 SD-INIRDNEENICLHW 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.8 bits (128), Expect = 3e-09
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPL  AA   H    LE ++              ++  G + LHLA +  H ++V  L+ 
Sbjct: 46  TPLMEAAENNH----LEAVKYLIKAGALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLS 98

Query: 93  VDRNLVRVQGREGVTPLHY 111
             +  V  Q   G TP+ +
Sbjct: 99  NGQMDVNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           +PLH AA  GH    ++I  +              ++   +PL  A +N+H + V  LI 
Sbjct: 13  SPLHAAAEAGH----VDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 93  VDRNLVRVQGREGVTPLHY 111
                V  +  EG T LH 
Sbjct: 66  AGAL-VDPKDAEGSTCLHL 83

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TP+  A    H    +++++L        +    ++      LH A  +    +   L+ 
Sbjct: 113 TPMIWATEYKH----VDLVKLLLSKGSDIN---IRDNEENICLHWAAFSGCVDIAEILLA 165

Query: 93  VDRNLVRVQGREGVTPLHY 111
              + +      G +PLH 
Sbjct: 166 AKCD-LHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 21/69 (30%)

Query: 38  DTPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMV 87
           D+PLHIAA         + + L          K       N+ G +PL  A  NS     
Sbjct: 178 DSPLHIAARENR----YDCVVLFLSRDSDVTLK-------NKEGETPLQCASLNSQVWSA 226

Query: 88  LRLIDVDRN 96
           L++    ++
Sbjct: 227 LQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
            ++Q   SPLH A +  H  +   L+    N +     +  TPL  
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLME 50

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.2 bits (129), Expect = 7e-10
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF-ARK--QNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
             +H AA  G     L+ ++    F A    ++  G  PLHLA +  H ++V  L+    
Sbjct: 72  AVIHDAARAGF----LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127

Query: 96  NLVRVQGREGVTPLHY 111
           + V  +  +G T    
Sbjct: 128 SNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.0 bits (113), Expect = 1e-07
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 23/83 (27%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
             L  AA+ G     LE +            +       N +G + L +  +  + ++  
Sbjct: 7   NELASAAARGD----LEQLTSLLQNNVNVNAQ-------NGFGRTALQVM-KLGNPEIAR 54

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
           RL+    N   ++ R G   +H 
Sbjct: 55  RLLLRGAN-PDLKDRTGFAVIHD 76

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 23/83 (27%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           T L +   +G+     EI R           K       ++ GF+ +H A +      + 
Sbjct: 40  TALQVMK-LGN----PEIARRLLLRGANPDLK-------DRTGFAVIHDAARAGFLDTLQ 87

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L++   + V ++  EG  PLH 
Sbjct: 88  TLLEFQAD-VNIEDNEGNLPLHL 109

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            PLH+AA  GH    L ++        S    +N  G +   LA      ++V  +  
Sbjct: 105 LPLHLAAKEGH----LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 16/84 (19%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARK-----------QNQYGFSPLHLALQNSHTQMV 87
           T LH  AS        E          K            +    +PL LA+     ++V
Sbjct: 127 TVLHWIASNSS----AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

Query: 88  LRLIDVDRNLVRVQGREGVTPLHY 111
             L+    +   +  +   + LH 
Sbjct: 183 AYLMKAGAD-PTIYNKSERSALHQ 205

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 26/122 (21%)

Query: 6   ILAAQAGNVDALYELIWEDA-YLLDQ---IDRVPFVD----TPLHIAASMGHVNFALEIM 57
              A   + +   +LI  +A   +     ++ +   D    TPL +A           ++
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAM---DCDENTPLMLAVLARR----RRLV 182

Query: 58  RL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRV--QGREGVTPL 109
                    P+     N+   S LH A  N    M++ +++  +    +    R G+T L
Sbjct: 183 AYLMKAGADPT---IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239

Query: 110 HY 111
             
Sbjct: 240 MI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 22/89 (24%)

Query: 39  TPLHIAASMGHVNFALEIMRL-----------KPSFARKQNQYGFSPLHLALQNSHTQMV 87
           T L I A     +  +   +L             +    +   G + LH A Q S+  +V
Sbjct: 237 TALMIVAHNEGRD-QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 88  LRLI-----DVDRNLVRVQGREGVTPLHY 111
             L+     + D      Q  +G TP+  
Sbjct: 296 KYLVGEKGSNKD-----KQDEDGKTPIML 319

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFAR----KQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           T LH AA + +    + I++           KQ++ G +P+ LA Q    ++V+ LI   
Sbjct: 281 TALHYAAQVSN----MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336

Query: 95  RNLVRVQGREGVTPLHY 111
            + V        T    
Sbjct: 337 AS-VEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 25/103 (24%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFAR--KQNQYGFSPLHLALQNSHTQMVLR--- 89
           + LH AA+         +M              + ++ G + L +   N     V     
Sbjct: 201 SALHQAAANRD----FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256

Query: 90  LID--VDRNLVRVQGRE-----GVTPLHY----GNVDLLYKFL 121
           L++     +      ++     G T LHY     N+ ++ K+L
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV-KYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 20/85 (23%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARK-----QNQYGFSPLHLALQNSHTQMVLRLIDV 93
             LH  A+ G       I        R+       ++  + LH    NS  +    LI  
Sbjct: 96  IKLHTEAA-GS----YAITEP---ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH 147

Query: 94  DRNLVRVQG-------REGVTPLHY 111
           +       G        +  TPL  
Sbjct: 148 EAKECIAAGADVNAMDCDENTPLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 14/81 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
             L  A+  G+    ++  R +         Y   P      N +  +        +   
Sbjct: 39  HSLLEASYDGY----IKRQRNE------LQHYSLYPNPQGYGNGNDFLGDFNHTNLQI-P 87

Query: 99  RVQGREGVTPLHY---GNVDL 116
                E    LH    G+  +
Sbjct: 88  TEPEPESPIKLHTEAAGSYAI 108

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 39  TPLHIAASMGHVNFALEIMR-LKPSFARK--QNQYGFSPLHLALQNSHTQMVLRLI---- 91
           TP+ +AA  G     +E++  L    A     +    +   LA  N+H  +V        
Sbjct: 315 TPIMLAAQEGR----IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

Query: 92  DVD 94
           + +
Sbjct: 371 ERE 373

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.8 bits (128), Expect = 9e-10
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 15/79 (18%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF---ARKQNQYGFSPLHLALQNSHTQMVLRLI---D 92
           +P+H AA  G     L+ +++           +  G  P+HLA+Q  HT +V  L    D
Sbjct: 70  SPVHDAARTGF----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125

Query: 93  VDRNLVRVQGREGVTPLHY 111
           +       +   G+TPL  
Sbjct: 126 LH-----RRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.9 bits (118), Expect = 3e-08
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
             L  AA+ G V     ++  +       N++G + L + +    T + L L+    +  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS-P 61

Query: 99  RVQGREGVTPLHY 111
            VQ   G +P+H 
Sbjct: 62  NVQDTSGTSPVHD 74

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.9 bits (118), Expect = 3e-08
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 17/112 (15%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
             AA  G+V  +  L+  +    D ++R  F  T L +    G       I         
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNR--FGKTALQVMMF-GS----TAIALELLKQGA 59

Query: 60  KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
            P+    Q+  G SP+H A +      +  L++   + V V    G  P+H 
Sbjct: 60  SPN---VQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHL 107

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.6 bits (112), Expect = 2e-07
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFAR--KQNQYGFSPLHLALQNSHTQMVLRLID 92
            P+H+A   GH      ++    + +   +++  G +PL LALQ     +V  L  
Sbjct: 103 LPIHLAVQEGH----TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF-AR--KQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           T LH A    +      I+    +  A     + +G++PLH A   + T + + L+    
Sbjct: 56  TALHNAICGAN----YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

Query: 96  NLVRVQGREGVTPLHY 111
            +      +G T    
Sbjct: 112 AIFATTLSDGATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI- 91
             L  AA  G     LE+++        PS   + N+ G + LH A+  ++  +V  LI 
Sbjct: 23  VLLLDAALTGE----LEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLIT 75

Query: 92  ---DVDRNLVRVQGREGVTPLHY 111
              +V+          G TPLH 
Sbjct: 76  AGANVNS-----PDSHGWTPLHC 93

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 38  DTPLHIAASMGHVNFALEIMRLKPSFA----RKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
           D+P   A + G      EI+      A     K N+YG + L  A +  H   V  L++ 
Sbjct: 73  DSPYLYAGAQGR----TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 94  DRNLVRVQGREGVTPLHY 111
            R  +  Q   G T L  
Sbjct: 129 GREDIDFQNDFGYTALIE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 13/79 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPL+IA         +EI +         +    QN    SP   A     T+++  ++ 
Sbjct: 41  TPLNIAVHNND----IEIAKALIDRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLK 93

Query: 93  VDRNLVRVQGREGVTPLHY 111
                +    R G   L  
Sbjct: 94  HATPDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR--LKPSF 63
           + A   G  + L  ++      L++ +R  +    L  AA  GH    ++ ++  L+   
Sbjct: 77  LYAGAQGRTEILAYMLKHATPDLNKHNR--YGGNALIPAAEKGH----IDNVKLLLEDGR 130

Query: 64  ARK--QNQYGFSPLHLA-----LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
                QN +G++ L  A         +  +V  L++   +   ++   G T + Y
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF-ARK--QNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
             L  A          ++  +      +    +  G +PL++A+ N+  ++   LID   
Sbjct: 8   ALLEAANQRDT----KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 96  NLVRVQGREGVTPLHY 111
           + + +Q     +P  Y
Sbjct: 64  D-INLQNSISDSPYLY 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           +     + L  A Q    ++   L D     V     EG TPL+ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNI 45

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 27/92 (29%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI- 91
           +P+H AA  GH    +E +               +  +  +PL+LA +N     V +L+ 
Sbjct: 159 SPIHEAARRGH----VECVNSLIAYGGNID---HKISHLGTPLYLACENQQRACVKKLLE 211

Query: 92  ---DVDRNLVRVQGREGVTPLHY----GNVDL 116
              DV+      QG+   +PLH      + +L
Sbjct: 212 SGADVN------QGKGQDSPLHAVVRTASEEL 237

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 15/79 (18%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPL++A            ++              Q +   SPLH  ++ +  ++   L+D
Sbjct: 192 TPLYLACENQQ----RACVKKLLESGADV----NQGKGQDSPLHAVVRTASEELACLLMD 243

Query: 93  VDRNLVRVQGREGVTPLHY 111
              +  + +  EG  P+  
Sbjct: 244 FGAD-TQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 11/107 (10%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVD--TPLHIAASMGHVNFALEIMRLKPSFA 64
           + +   +      L+   +++     +   +D   P       G         RL  +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI--------RLLSNPL 52

Query: 65  RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
                  +SP+H A  + H   +  LI      V +   + V+PLH 
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHE 98

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.4 bits (119), Expect = 6e-08
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 26/115 (22%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------K 60
            AA  G+  +L  LI +   + + I       +PLH A   GH    L  +++      +
Sbjct: 65  EAAIHGHQLSLRNLISQGWAV-NIITA--DHVSPLHEACLGGH----LSCVKILLKHGAQ 117

Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLI----DVDRNLVRVQGREGVTPLHY 111
            +          +PL  A  +     V  L+     V          +  +P+H 
Sbjct: 118 VN---GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE------SDLASPIHE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 15/79 (18%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPL  A   G      + + L             ++    SP+H A +  H + V  LI 
Sbjct: 127 TPLFNACVSGS----WDCVNLLLQHGASVQ---PES-DLASPIHEAARRGHVECVNSLIA 178

Query: 93  VDRNLVRVQGREGVTPLHY 111
              N +  +     TPL+ 
Sbjct: 179 YGGN-IDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 16/97 (16%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF-A 64
            LA +      + +L+   A     +++    D+PLH            E+  L   F A
Sbjct: 195 YLACENQQRACVKKLLESGA----DVNQGKGQDSPLHAVVRTAS----EELACLLMDFGA 246

Query: 65  R--KQNQYGFSPLHLALQNSHTQMVLRLI----DVDR 95
               +N  G  P+ L    S    +  L      + +
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLAQLF-LEREGASLPK 282

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF-AR-KQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
             L             +    + +   R K N    + L  +       +V R+I    +
Sbjct: 7   VSLPPGKRTNL----RKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 97  LVRVQGREGVTPLHY 111
              +   EG+T LH 
Sbjct: 63  -PSLPNDEGITALHN 76

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 23/126 (18%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
               +        E I        ++   P     L  ++  G      ++++       
Sbjct: 10  PPGKRTNLRKTGSERIAHGM----RVKFNPLPLALLLDSSLEGE----FDLVQRIIYEVD 61

Query: 60  KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVD 115
            PS     N  G + LH A+   HT++V  L+    N V     +G TPLH      NV 
Sbjct: 62  DPS---LPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQ 117

Query: 116 LLYKFL 121
           +  KFL
Sbjct: 118 VC-KFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF-AR--KQNQYGFSPLHLALQNSHTQMVLRLIDV-- 93
           T LH A   GH     EI++    F       +  G++PLH A   ++ Q+   L++   
Sbjct: 72  TALHNAVCAGH----TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

Query: 94  DRNLVRVQGREGVTPLHY 111
               +     +       
Sbjct: 128 AVFAMTYSDMQTAADKCE 145

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH AAS  +    +++ +               +    +     ++  +TQ    L  
Sbjct: 105 TPLHCAASCNN----VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160

Query: 93  VDRNLVRVQGREGVTPLHY 111
           V    + +  +  +  L  
Sbjct: 161 VQEK-MGIMNKGVIYALWD 178

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 15/121 (12%), Positives = 30/121 (24%), Gaps = 19/121 (15%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF-A 64
             AA   NV     L+   A +                    G+     +  +       
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY----TQCSQFLYGVQE 163

Query: 65  RK--QNQYGFSPLHLALQNSHTQM---------VLRLIDVDRN---LVRVQGREGVTPLH 110
           +    N+     L      +  ++         ++   D D       R+  +EG  P +
Sbjct: 164 KMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRN 223

Query: 111 Y 111
            
Sbjct: 224 L 224

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH    +G     LE++++       P+    +++   +PL  A++  + + +  ++D
Sbjct: 140 TALHWCVGLGPEY--LEMIKILVQLGASPT---AKDKADETPLMRAMEFRNREALDLMMD 194

Query: 93  VDRNL----VRVQGREGVTPLHY 111
              +     +    ++G + LH+
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHW 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 6   ILAAQAGNVDALYELIWEDAYL----LDQIDRVPFVDTPLHIAASMGHVNFALEIMRL-- 59
           + A +  N +AL  ++          LD  ++    ++ LH A  +       ++     
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANK--QGNSHLHWAILINW----EDVAMRFV 231

Query: 60  ----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYGN 113
                 +    ++     PL+L+++ +   +   L+       +       G T L    
Sbjct: 232 EMGIDVN---MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 114 VDLLYKFLAA 123
           V L +   AA
Sbjct: 289 VWLDFVPAAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 16/79 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
             +H+AA  G      + +R        P+    QN++G + LHLA +         L  
Sbjct: 22  EKIHVAARKGQ----TDEVRRLIETGVSPT---IQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 93  VDRNLVRVQGREGVTPLHY 111
           V           G  P+H 
Sbjct: 75  VGEV---HSLWHGQKPIHL 90

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 19/108 (17%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
            LA  A   D     +     L++          P  +           E+  +    + 
Sbjct: 89  HLAVMANKTD-----LVV--ALVEGAKER--GQMPESLLNECDE----REVNEIG---SH 132

Query: 66  KQNQYGFSPLHLALQ--NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
            ++  G + LH  +     + +M+  L+ +  +    + +   TPL  
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 18/119 (15%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRV----------PFVDTPLHIAASMGHVNFALE 55
            L+ +A  V    EL+ +    L Q                    +  AA         E
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK----QE 304

Query: 56  IMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           +++L   K     +    G        + +   +    +      VR + R        
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP-VRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 19/106 (17%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
            LA + G VD    L            +      P+H+A          +++        
Sbjct: 58  HLACKFGCVDTAKYLASVGEVHSLWHGQ-----KPIHLAVMANK----TDLVVA---LVE 105

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
              + G  P  L  +    ++      V          +G T LH+
Sbjct: 106 GAKERGQMPESLLNECDEREVNEIGSHVKHC-------KGQTALHW 144

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF-ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
           T LH+A   G     ++  +   S        +G  P+HLA+  + T +V+ L++  +  
Sbjct: 55  TALHLACKFGC----VDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE- 109

Query: 98  VRVQGREGVTPLHY 111
                  G  P   
Sbjct: 110 ------RGQMPESL 117

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           K +      +H+A +   T  V RLI+   +   +Q R G T LH 
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHL 59

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.8 bits (123), Expect = 2e-09
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+AA  GH    LE+++L        +    +++ G +PLHLA +N H ++V  L++
Sbjct: 4   TPLHLAARNGH----LEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 93  VDRNLVRVQGREGVTPLHY 111
              + V  + + G TPLH 
Sbjct: 57  AGAD-VNAKDKNGRTPLHL 74

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 44.7 bits (107), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 15/62 (24%)

Query: 39 TPLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
          TPLH+AA  GH    LE+++L              +++ G +PLHLA +N H ++V  L+
Sbjct: 37 TPLHLAARNGH----LEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLLL 88

Query: 92 DV 93
          + 
Sbjct: 89 EA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 35.4 bits (83), Expect = 8e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 71  GFSPLHLALQNSHTQMVLRLIDV--DRNLVRVQGREGVTPLHY 111
           G +PLHLA +N H ++V  L++   D N    + + G TPLH 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHL 41

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 38  DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI----DV 93
           ++PL +AA    V    ++++ +     ++   G + LH+A    + +  + L+    ++
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 94  DRNLVRVQGREGVTPLHY 111
               +  +  EG T LH 
Sbjct: 64  VFEPMTSELYEGQTALHI 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 45/137 (32%)

Query: 3   HYVILAAQAGNVDALYELIWEDAYLLDQ-IDRVPFVD-------TPLHIAASMGHVNFAL 54
                AA+  +V AL +L      L  +  +    V        T LHIAA   +    L
Sbjct: 8   LL---AAKENDVQALSKL------LKFEGCE----VHQRGAMGETALHIAALYDN----L 50

Query: 55  EIMRL--------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI----DVD-------- 94
           E   +               +   G + LH+A+ N +  +V  L+     V         
Sbjct: 51  EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110

Query: 95  RNLVRVQGREGVTPLHY 111
                     G  PL +
Sbjct: 111 HYRPHNLIYYGEHPLSF 127

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 3   HYVILAAQAGNVDALYELIW----------EDAYLLDQIDRVPFVDTPLHIAASMGHVNF 52
           H    A    NV+ +  L+              +     + + + + PL  AA +G    
Sbjct: 80  HI---AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS--- 133

Query: 53  ALEIMRLKPSF---ARKQNQYGFSPLHLALQNSHTQMVLR----LIDVDRN-----LVRV 100
             EI+RL        R Q+  G + LH+ +   +     +    L+  D       L  V
Sbjct: 134 -EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELV 192

Query: 101 QGREGVTPLHY 111
              +G+TP   
Sbjct: 193 PNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 21/89 (23%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------------KPSFARKQNQYGFSPLHLALQNS 82
           T LHIA    +    + ++R                           YG  PL  A    
Sbjct: 77  TALHIAVINQN----VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132

Query: 83  HTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             ++V  LI+   + +R Q   G T LH 
Sbjct: 133 SEEIVRLLIEHGAD-IRAQDSLGNTVLHI 160

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 9/63 (14%)

Query: 39  TPLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGFSPLHLALQNSHTQMVLR 89
           T LHI     +  FA ++  L           S     N  G +P  LA    +  M   
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215

Query: 90  LID 92
           L+ 
Sbjct: 216 LMQ 218

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 38  DTPLHIAASMGHVNFA-LEIMRLKPSFAR--KQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           DTPLHIA   G++      +   +         N    +PLHLA+  +   +V  L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 95  RNLVRVQGREGVTPLHY 111
            +      R G T  H 
Sbjct: 70  AS-PMALDRHGQTAAHL 85

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.7 bits (125), Expect = 6e-09
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 39  TPLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           T  H+A            +R               +N  G + LH+A+     + V  L+
Sbjct: 81  TAAHLACEHRS----PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 136

Query: 92  DVDRNLVRVQGREGVTPLHY 111
           +   ++  V  + G +PL +
Sbjct: 137 ERGADIDAVDIKSGRSPLIH 156

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.3 bits (124), Expect = 9e-09
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD----TPLHIAASMGHVNFALEIMRL-- 59
            LA +  +   L  L+   A     ++     +    T LH+A +        E ++L  
Sbjct: 84  HLACEHRSPTCLRALLDSAAPGTLDLEAR---NYDGLTALHVAVNTEC----QETVQLLL 136

Query: 60  --KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
                      + G SPL  A++N+   MV  L+    N V  Q   G + LH 
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHS 189

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           +PL  A         L +++L          +          G S LH A       +V 
Sbjct: 152 SPLIHAVENNS----LSMVQLLLQHGANVNAQ-------MYSGSSALHSASGRGLLPLVR 200

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L+    +   ++     TPL  
Sbjct: 201 TLVRSGAD-SSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.6 bits (117), Expect = 7e-08
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 16/82 (19%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+A           ++RL       P      +++G +  HLA ++     +  L+D
Sbjct: 48  TPLHLAVITTL----PSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTCLRALLD 100

Query: 93  ---VDRNLVRVQGREGVTPLHY 111
                   +  +  +G+T LH 
Sbjct: 101 SAAPGTLDLEARNYDGLTALHV 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 13/60 (21%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           + LH A+  G     L ++R         S    +N +  +PL +A       ++     
Sbjct: 185 SALHSASGRGL----LPLVRTLVRSGADSS---LKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 64  ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL---VRVQGREGVTPLHY 111
           A + ++ G +PLH+A+   +   V RL+++ +     + +      TPLH 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 52

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.2 bits (124), Expect = 3e-09
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPLH+AA  GH    LE+++L          K       ++ G +PLHLA +N H ++V 
Sbjct: 4   TPLHLAARNGH----LEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVK 52

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L++   + V  + + G TPLH 
Sbjct: 53  LLLEAGAD-VNAKDKNGRTPLHL 74

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.2 bits (124), Expect = 3e-09
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 16/80 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           TPLH+AA  GH    LE+++L              +++ G +PLHLA +N H ++V  L+
Sbjct: 37  TPLHLAARNGH----LEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLLL 88

Query: 92  DVDRNLVRVQGREGVTPLHY 111
           +   + V  + + G TPLH 
Sbjct: 89  EAGAD-VNAKDKNGRTPLHL 107

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.3 bits (101), Expect = 5e-06
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 15/62 (24%)

Query: 39  TPLHIAASMGHVNFALEIMRL-------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           TPLH+AA  GH    LE+++L              +++ G +PLHLA +N H ++V  L+
Sbjct: 70  TPLHLAARNGH----LEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 92  DV 93
           + 
Sbjct: 122 EA 123

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 13/85 (15%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            PLH AAS G+    L+I                 N  G +PL +A + +  +++   ++
Sbjct: 108 IPLHAAASCGY----LDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 93  VDRNLVRVQGREGVTPLHYGNVDLL 117
                +    +E    +       L
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH+AA+ G+     E+++L        +    ++  G++PLH A      +    L++
Sbjct: 201 TALHVAAAKGY----TEVLKLLIQARYDVN---IKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 93  VDRNLVRVQGREGVTPLHY 111
              + +    + G T    
Sbjct: 254 NLCD-MEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.0 bits (118), Expect = 7e-08
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVD----TPLHIAASMGHVNFALEIMRLKPSF 63
           A  +G+ + +  L+   A     I+     +    T LH A    +    +++++     
Sbjct: 47  ACSSGDTEEVLRLLERGA----DINYA---NVDGLTALHQACIDDN----VDMVKFLVEN 95

Query: 64  -AR--KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
            A   + +  G+ PLH A    +  +   LI    + V     EG TPL  
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 14/79 (17%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
                A S G      E +          +     N  G + LH A  + +  MV  L++
Sbjct: 42  AVFLAACSSGD----TEEVLRLLERGADIN---YANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 93  VDRNLVRVQGREGVTPLHY 111
              N +     EG  PLH 
Sbjct: 95  NGAN-INQPDNEGWIPLHA 112

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.3 bits (111), Expect = 7e-07
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA- 64
            +A +    + L   +         +D    ++        +       +  +   S   
Sbjct: 144 DIAEEEAMEELLQNEVNRQG-----VD----IEAARKEEERIML----RDARQWLNSGHI 190

Query: 65  --RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
              +  + G + LH+A    +T+++  LI    + V ++  +G TPLH 
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHA 238

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 20/93 (21%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQ--YGFSPLHLALQNSHTQMVLRLI----D 92
               +   +G        +       +K        +    A  +  T+ VLRL+    D
Sbjct: 10  RNEQLKRWIGS----ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD 65

Query: 93  VDRNLVRVQGREGVTPLHY----GNVDLLYKFL 121
           ++         +G+T LH      NVD++ KFL
Sbjct: 66  INY-----ANVDGLTALHQACIDDNVDMV-KFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 13/64 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH AA  G      E  R+              N+ G +   +A ++    +      
Sbjct: 234 TPLHAAAHWGK----EEACRILVENLCDME---AVNKVGQTAFDVADEDILGYLEELQKK 286

Query: 93  VDRN 96
            +  
Sbjct: 287 QNLL 290

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.1 bits (126), Expect = 6e-09
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 23/116 (19%)

Query: 3   HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL--- 59
           +Y   A    NV  +  L+   A   + ++     + PLH AA++       +I+++   
Sbjct: 36  YY---AIADNNVRLVCTLLNAGALK-NLLEN----EFPLHQAATLED----TKIVKILLF 83

Query: 60  ---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGV-TPLHY 111
                S   + +  G + L+ A+ + + Q V   +  +   +   G+ G  T  ++
Sbjct: 84  SGLDDS---QFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 39  TPLHIAASMGHVNFALEIMR-LKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
           +  + A +  +    + ++  L  + A K       PLH A     T++V  L+    + 
Sbjct: 33  SASYYAIADNN----VRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLD- 87

Query: 98  VRVQGREGVTPLHY 111
                 +G T L+Y
Sbjct: 88  DSQFDDKGNTALYY 101

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 48.7 bits (117), Expect = 9e-08
 Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFS-PLHLALQNSHTQMVLRLIDVD 94
           T L+ A   G+    ++ ++L   K        + G+    + A+  +   +V   +   
Sbjct: 97  TALYYAVDSGN----MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152

Query: 95  RNLVRVQGREGVTPLHY 111
            +   +     ++ +H 
Sbjct: 153 PSTFDL--AILLSCIHI 167

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 26/114 (22%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQ---IDRVPFVDTPLHIAASMGHVNFALEIMRL--- 59
             A    +V  +       +Y L +      +  + + +HI    GH    +++M L   
Sbjct: 134 YHAVMLNDVSIV-------SYFLSEIPSTFDLAILLSCIHITIKNGH----VDMMILLLD 182

Query: 60  KPSFARKQNQYGFSP-LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYG 112
             +     N   F P + LA+ N   +M+  L                +     
Sbjct: 183 YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK--------YDINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.0 bits (110), Expect = 8e-07
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 38  DTPLHIAASMGHVNFALEIMR--LKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
            T  + A  +      + I+   L    +        S +H+ ++N H  M++ L+D   
Sbjct: 130 KTSFYHAVMLND----VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185

Query: 96  NLVRVQGREGVTP-LHY 111
           +           P +  
Sbjct: 186 S-TNTNNSLLFIPDIKL 201

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           K + +G S  + A+ +++ ++V  L++           E   PLH 
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGAL---KNLLENEFPLHQ 68

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 51.7 bits (125), Expect = 7e-09
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRLK--PSFAR-----------KQNQYGFSPLHLALQNSHTQ 85
           TPL IA+  G           +  P+              + ++ G + LHLA + S + 
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 86  MVLRLIDVDRNLVRVQGREGVTPLHY 111
              RL++   +   +Q   G TPLH 
Sbjct: 72  AAKRLLEASAD-ANIQDNMGRTPLHA 96

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 13/79 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH+AA         +  +         +    Q+  G +PLH A+      +   LI 
Sbjct: 59  TALHLAARYSR----SDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 93  VDRNLVRVQGREGVTPLHY 111
                +  +  +G TPL  
Sbjct: 112 NRATDLDARMHDGTTPLIL 130

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           + LH AA++ +    ++   +             QN    +PL LA +    +    L+D
Sbjct: 159 SALHWAAAVNN----VDAAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLD 211

Query: 93  --VDRNLVRVQGREGVTPLHY 111
              +R+   +       P   
Sbjct: 212 HFANRD---ITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           TPLH A S         + ++    + +    +   G +PL LA + +   M+  LI+  
Sbjct: 92  TPLHAAVSADA----QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147

Query: 95  RNLVRVQGREGVTPLHY 111
            + V      G + LH+
Sbjct: 148 AD-VNAVDDLGKSALHW 163

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 28/117 (23%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------- 59
            A  A        LI   A  LD         TPL +AA +        ++         
Sbjct: 96  AAVSADAQGVFQILIRNRATDLDARMH--DGTTPLILAARLAV----EGMLEDLINSHAD 149

Query: 60  ---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHY 111
                      +  G S LH A   ++    + L+    +++   +Q     TPL  
Sbjct: 150 VNAV-------DDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPS-FAR--KQNQYGFSPLHLALQNSHTQMVLRLI 91
           TPL +AA  G      E  ++    FA     +     P  +A +  H  +V  L 
Sbjct: 192 TPLFLAAREGS----YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.6 bits (122), Expect = 9e-09
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 20/83 (24%)

Query: 38  DTPLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           +TP   AA         + +                   ++ G + L         + V 
Sbjct: 45  ETPWWTAARKAD----EQALSQLLEDRDVDAV-------DENGRTALLFVAGLGSDKCVR 93

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L +   +L     R G+T LH 
Sbjct: 94  LLAEAGADLDHRDMRGGLTALHM 116

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.6 bits (117), Expect = 6e-08
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           T L   A +G      + +RL          +  + G + LH+A      ++V  L+++ 
Sbjct: 78  TALLFVAGLGS----DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133

Query: 95  RNLVRVQGREGVTPLHY 111
            + + V+   G+T L  
Sbjct: 134 AD-IEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.2 bits (108), Expect = 9e-07
 Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 12/76 (15%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI---DVDR 95
               I    GH              A        +P   A + +  Q + +L+   DVD 
Sbjct: 16  MEYLIEWKDGH----SPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVD- 70

Query: 96  NLVRVQGREGVTPLHY 111
                    G T L +
Sbjct: 71  ----AVDENGRTALLF 82

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 13/65 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH+AA         E++               +++ G + L LA +   T      + 
Sbjct: 112 TALHMAAGYVR----PEVVEALVELGADIE---VEDERGLTALELAREILKTTPKGNPMQ 164

Query: 93  VDRNL 97
             R +
Sbjct: 165 FGRRI 169

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 38  DTPLHIAASMGHVNFALEIMR--LKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           +TP   AA         + +   L+       ++ G + L         + V  L +   
Sbjct: 46  ETPWWTAARKAD----EQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101

Query: 96  NLVRVQGREGVTPLHY 111
           +L     R G+T LH 
Sbjct: 102 DLDHRDMRGGLTALHM 117

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 39  TPLHIAASMGHVNFALEIMRL----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           T L   A +G      + +RL          +  + G + LH+A      ++V  L+++ 
Sbjct: 79  TALLFVAGLGS----DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134

Query: 95  RNLVRVQGREGVTPLHY 111
            + + V+   G+T L  
Sbjct: 135 AD-IEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH+AA         E++               +++ G + L LA +   T      + 
Sbjct: 113 TALHMAAGYVR----PEVVEALVELGADIE---VEDERGLTALELAREILKTTPKGNPMQ 165

Query: 93  VDRNLVRVQGREGVTPLHYGN 113
             R +    G E V  +  G 
Sbjct: 166 FGRRI----GLEKVINVLEGQ 182

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 12/76 (15%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI---DVDR 95
               I    GH              A        +P   A + +  Q + +L+   DVD 
Sbjct: 17  MEYLIEWKDGH----SPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVD- 71

Query: 96  NLVRVQGREGVTPLHY 111
                    G T L +
Sbjct: 72  ----AVDENGRTALLF 83

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 4/48 (8%)

Query: 64  ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             +    G     +  ++ H+   +    +  ++V     E  TP   
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWT 51

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 18/81 (22%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPL +AA +        ++          +     +  G S LH A   ++    + L+ 
Sbjct: 94  TPLILAARLAV----EGMLEDLINSHADVN---AVDDLGKSALHWAAAVNNVDAAVVLLK 146

Query: 93  --VDRNLVRVQGREGVTPLHY 111
              +++   +Q     TPL  
Sbjct: 147 NGANKD---MQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 13/79 (16%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           T LH+AA         +  +         +    Q+  G +PLH A+      +   LI 
Sbjct: 27  TALHLAARYSR----SDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVFQILIR 79

Query: 93  VDRNLVRVQGREGVTPLHY 111
                +  +  +G TPL  
Sbjct: 80  NRATDLDARMHDGTTPLIL 98

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 26/85 (30%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           + LH AA++ +    ++   +          +       N    +PL LA +    +   
Sbjct: 127 SALHWAAAVNN----VDAAVVLLKNGANKDMQ-------NNREETPLFLAAREGSYETAK 175

Query: 89  RLID--VDRNLVRVQGREGVTPLHY 111
            L+D   +R+   +       P   
Sbjct: 176 VLLDHFANRD---ITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPS-FA--RKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
           TPL +AA  G      E  ++    FA     +     P  +A +  H  +V  L +   
Sbjct: 160 TPLFLAAREGS----YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE--- 212

Query: 96  NLVRVQGREGVTPLH 110
                        LH
Sbjct: 213 -----YNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.1 bits (95), Expect = 9e-05
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           + ++ G + LHLA + S +    RL++   +   +Q   G TPLH 
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 64

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.7 bits (120), Expect = 1e-08
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPLH+AAS GH      I+ +          K       +    + LH A +++H ++V 
Sbjct: 69  TPLHMAASEGH----ANIVEVLLKHGADVNAK-------DMLKMTALHWATEHNHQEVVE 117

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            LI    + V  Q +   T    
Sbjct: 118 LLIKYGAD-VHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.3 bits (119), Expect = 2e-08
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           +PLH+AA  GH         +          +        +   +PLH+A    H  +V 
Sbjct: 36  SPLHLAAQYGH----FSTTEVLLRAGVSRDAR-------TKVDRTPLHMAASEGHANIVE 84

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L+    + V  +    +T LH+
Sbjct: 85  VLLKHGAD-VNAKDMLKMTALHW 106

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 48.9 bits (118), Expect = 2e-08
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 25/84 (29%)

Query: 39  TPLHIAASMGHVNFALEIMRL---------KPSFARKQNQYGFSPLHLALQNSHTQMVLR 89
             L  AA  G      + +R+                 +  G SPLHLA Q  H      
Sbjct: 4   KKLLEAARAGQ----DDEVRILMANGAPFTT-------DWLGTSPLHLAAQYGHFSTTEV 52

Query: 90  LID--VDRNLVRVQGREGVTPLHY 111
           L+   V R+    + +   TPLH 
Sbjct: 53  LLRAGVSRD---ARTKVDRTPLHM 73

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 13/55 (23%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMV 87
           T LH A    H     E++ L             Q+++  +   +++ N +  + 
Sbjct: 102 TALHWATEHNH----QEVVELLIKYGADVH---TQSKFCKTAFDISIDNGNEDLA 149

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 39  TPLHIAASMGHVNFALEIMR-LKPSFA--RKQNQYGFSPLHLALQNSH---TQMVLRLID 92
           TPLH   S+ +    LE+++ L    +     +  G S L  A+++ +   +     L+D
Sbjct: 133 TPLHWLTSIAN----LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 93  VDRNLVRVQGREGVTPLHY 111
                + ++     T LH+
Sbjct: 189 YLYPCLILEDSMNRTILHH 207

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 14/121 (11%)

Query: 3   HY-VILAAQAGNVDALYELIWEDAYLL-----DQIDRVPFVDTPLHIAASMGHVNFALEI 56
           H+ +I +   G   A    +      +       I              +    +  LE 
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265

Query: 57  MRLKPSFAR---KQNQYGFSPLHLALQNSHTQMVLRLIDV--DRNLVRVQGREGVTPLHY 111
           + LK   A     Q+  G + L++A +  +  +V  L+D   D  +     + G+ P+ +
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI---ANKSGLRPVDF 322

Query: 112 G 112
           G
Sbjct: 323 G 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 18/101 (17%)

Query: 38  DTPLHIAASMGHVNFALEIMRLKPSFA----RKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
           +      +     +   E+    P+         +++G +PLH     ++ ++V  L+  
Sbjct: 97  NQQQQHVSFD---SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 153

Query: 94  DRNLVRVQGREGVTPLHY----------GNVDLLYKFLAAC 124
             N        G + L            G  + L  +L  C
Sbjct: 154 GSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 12/117 (10%), Positives = 31/117 (26%), Gaps = 18/117 (15%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPS 62
             AA  G  +   EL  +     + + +       L+      +     +I      K +
Sbjct: 11  SAAAMLGTYEDFLELFEKGYEDKESVLK----SNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 63  FARKQNQYGFSPLHLALQNSH------TQMVLRLID--VDRNLVRVQGREGVTPLHY 111
             + + + G +      Q         T++    ++   D        +     +  
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT---ALYKPYKIVVFK 120

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 9/87 (10%), Positives = 23/87 (26%), Gaps = 17/87 (19%)

Query: 39  TPLHIAASMGH--VNFALEIMRLKPSFARK------QNQYGFSPLHLALQNSHTQMVLRL 90
           T        G   +    E+ ++   F  K        +     +   + N        +
Sbjct: 77  TLFFPLFQGGGNDITGTTELCKI---FLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133

Query: 91  IDVDRNL------VRVQGREGVTPLHY 111
                        + ++ + G+T L +
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 17/99 (17%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQ---IDRVPFVD----TPLHIAASMGHVNFALEIMRL 59
              Q G  D            L++   I  +          +        V+    I   
Sbjct: 81  PLFQGGGNDITGTTELCK-IFLEKGADITAL---YKPYKIVVFKNIFNYFVDENEMIPLY 136

Query: 60  KPSFARK------QNQYGFSPLHLALQNSHTQMVLRLID 92
           K  F++       ++++G + L    +      +  + D
Sbjct: 137 KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 39  TPLHIAASMGHVNFALEIMR--LKPSFARKQNQYGFSPLHLALQNS----HTQMVLRLID 92
             +  AA +G      E      +  +  K++    + L+  L+N+      ++ + LI+
Sbjct: 8   RTVSAAAMLGT----YEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 93  --VDRNLVRVQGREGVTPLHY 111
              D   ++ + +EG T    
Sbjct: 64  KGAD---IKSRTKEGTTLFFP 81

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPLH+AA  GH    LEI+ +                  +  G +PL LA    H ++V 
Sbjct: 49  TPLHLAAFNGH----LEIVEVLLKNGADVNAV-------DHAGMTPLRLAALFGHLEIVE 97

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L+    + V     EG TPLH 
Sbjct: 98  VLLKNGAD-VNANDMEGHTPLHL 119

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.3 bits (119), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPL +AA  GH    LEI+ +                  +  G +PLHLA    H ++V 
Sbjct: 82  TPLRLAALFGH----LEIVEVLLKNGADVNAN-------DMEGHTPLHLAAMFGHLEIVE 130

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L+    + V  Q + G T    
Sbjct: 131 VLLKNGAD-VNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.5 bits (117), Expect = 4e-08
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 37  VDTPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQM 86
           +   L  AA  G      + +R+          +       +  G++PLHLA  N H ++
Sbjct: 14  LGKKLLEAARAGR----DDEVRILMANGADVNAE-------DASGWTPLHLAAFNGHLEI 62

Query: 87  VLRLIDVDRNLVRVQGREGVTPLHY 111
           V  L+    + V      G+TPL  
Sbjct: 63  VEVLLKNGAD-VNAVDHAGMTPLRL 86

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.1 bits (103), Expect = 4e-06
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 13/62 (20%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPLH+AA  GH    LEI+ +        +    Q+++G +   +++ N +  +   L  
Sbjct: 115 TPLHLAAMFGH----LEIVEVLLKNGADVN---AQDKFGKTAFDISIDNGNEDLAEILQK 167

Query: 93  VD 94
           ++
Sbjct: 168 LN 169

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 25/90 (27%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
            PLH A S GH     E+  L                  + + F+PLH A      ++  
Sbjct: 77  VPLHNACSYGH----YEVAELLVKHGAVVNVA-------DLWKFTPLHEAAAKGKYEICK 125

Query: 89  RLIDVDRNLVRVQGREGVTPLHY---GNVD 115
            L+    +    + R+G TPL     G+ D
Sbjct: 126 LLLQHGAD-PTKKNRDGNTPLDLVKDGDTD 154

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
           + AA+AG+V+ + +L    +     I+      TPLH AA        + ++        
Sbjct: 13  LEAAKAGDVETVKKLCTVQSVNCRDIEG--RQSTPLHFAAGYNR----VSVVEYLLQHGA 66

Query: 60  ----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
               K       ++ G  PLH A    H ++   L+      V V      TPLH 
Sbjct: 67  DVHAK-------DKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHE 114

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.5 bits (117), Expect = 4e-08
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 38  DTPLHIAASMGHVNFALEIMRLKPSF----ARKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
           D  L  AA  G     +E ++   +      R       +PLH A   +   +V  L+  
Sbjct: 9   DRQLLEAAKAGD----VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 94  DRNLVRVQGREGVTPLHY 111
             + V  + + G+ PLH 
Sbjct: 65  GAD-VHAKDKGGLVPLHN 81

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 36.6 bits (86), Expect = 8e-04
 Identities = 11/44 (25%), Positives = 15/44 (34%)

Query: 68  NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           N      L  A +    + V +L  V     R       TPLH+
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF 48

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 30/135 (22%)

Query: 3   HYVILAAQAGNVDALYELI--WEDAYLLDQIDRVPFVD------TPLHIAASMGHVNFAL 54
              +L  Q G    +  L+   +D+     +      D      + LHIA         L
Sbjct: 48  MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS----L 103

Query: 55  EIMRL----------------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL- 97
           + ++L                          +G  PL LA       +V  L++      
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

Query: 98  -VRVQGREGVTPLHY 111
            +      G T LH 
Sbjct: 164 SLEATDSLGNTVLHA 178

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 30/134 (22%)

Query: 8   AAQAGNVDALYELI----WEDAYLLDQIDRVPFV-DTPLHIAA---SMGHVNFALEIMRL 59
               G  + L  L+    W   YL D          T L  A      G     + ++++
Sbjct: 9   VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68

Query: 60  KPSFA----------RKQNQYGFSPLHLALQNSHTQMVLRLI----DVD--------RNL 97
                            +   G S LH+A++    Q V  L+    DV         +  
Sbjct: 69  DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH 128

Query: 98  VRVQGREGVTPLHY 111
                  G  PL  
Sbjct: 129 QGTCFYFGELPLSL 142

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 41/145 (28%)

Query: 7   LAAQAGNVDALYELI----------WEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEI 56
           +A +  ++  +  L+              +   Q     F + PL +AA         ++
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ----WDV 151

Query: 57  MRL------KPSFARKQNQYGFSPLHL----------------ALQNSHTQMVLRLIDVD 94
           +        +P+     +  G + LH                  + +   QM  RL    
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 211

Query: 95  RNLVRVQGREGVTPLH----YGNVD 115
           +    +   +G+TPL      G ++
Sbjct: 212 QL-EEISNHQGLTPLKLAAKEGKIE 235

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 38  DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
           ++ L I    G +     +           N  G +PL LA +    ++   ++      
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFRHILQ----- 242

Query: 98  VRVQGREGVTPLHYGN 113
              +   G    H+ +
Sbjct: 243 ---REFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 24/105 (22%)

Query: 36  FVDTPLHIAASMGHV-------NFALEIMRLKPSFARKQNQYGFSPLHLALQNS---HTQ 85
           F    L    S G          +     +     A  +   G + L  A+ N       
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 86  MVLRLIDVDRNLVRVQGR----------EGVTPLHY----GNVDL 116
            ++ L+ +D++    +            +G + LH      ++  
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC 105

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 47.6 bits (114), Expect = 4e-08
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSF---ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
             L  AA  G      + +R+  +       +++ G +PLHLA +N H ++V  L++   
Sbjct: 26  KKLLEAARAGQ----DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

Query: 96  NLVRVQGREGVTPLHYG 112
           + V  Q + G T     
Sbjct: 82  D-VXAQDKFGKTAFDIS 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 5/68 (7%)

Query: 44  AASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR 103
            +S  H                         L  A +      V  L+    + V  + +
Sbjct: 1   GSSHHH----HHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDK 55

Query: 104 EGVTPLHY 111
            G TPLH 
Sbjct: 56  NGSTPLHL 63

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMV 87
           TPLH+AA  GH    LE+++L     +    Q+++G +   +++ N +  + 
Sbjct: 59  TPLHLAARNGH----LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.9 bits (118), Expect = 4e-08
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           T L  A         L I             K       +  G +PL  ++   +++M  
Sbjct: 70  TALIWAVKNNR----LGIAEKLLSKGSNVNTK-------DFSGKTPLMWSIIFGYSEMSY 118

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L++   N V  +  EG TPL  
Sbjct: 119 FLLEHGAN-VNDRNLEGETPLIV 140

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.9 bits (118), Expect = 5e-08
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPL +A  +G        +            K       +  G + L  A++N+   +  
Sbjct: 37  TPLMVACMLGM----ENAIDKLVENFDKLEDK-------DIEGSTALIWAVKNNRLGIAE 85

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
           +L+    N V  +   G TPL +
Sbjct: 86  KLLSKGSN-VNTKDFSGKTPLMW 107

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPL  +   G+     E+             +       N  G +PL +A +   +++V 
Sbjct: 103 TPLMWSIIFGY----SEMSYFLLEHGANVNDR-------NLEGETPLIVASKYGRSEIVK 151

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
           +L+++  + +  +   G+T    
Sbjct: 152 KLLELGAD-ISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.8 bits (110), Expect = 6e-07
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 14/77 (18%)

Query: 38  DTPLHIAASMGH---VNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVD 94
           +    I         ++F              ++ Y  +PL +A        + +L++  
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNY----------RDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 95  RNLVRVQGREGVTPLHY 111
              +  +  EG T L +
Sbjct: 59  DK-LEDKDIEGSTALIW 74

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 21/67 (31%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPL +A+  G      EI++           +       +  G +    A      +++ 
Sbjct: 136 TPLIVASKYGR----SEIVKKLLELGADISAR-------DLTGLTAEASARIFGRQEVIK 184

Query: 89  RLIDVDR 95
              +V R
Sbjct: 185 IFTEVRR 191

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 6e-08
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 22/85 (25%)

Query: 37  VDTPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQM 86
           +   L  AA  G      + +R+          K       ++YG +PL+LA  + H ++
Sbjct: 14  LGKKLLEAARAGQ----DDEVRILMANGADVNAK-------DEYGLTPLYLATAHGHLEI 62

Query: 87  VLRLIDVDRNLVRVQGREGVTPLHY 111
           V  L+    + V      G TPLH 
Sbjct: 63  VEVLLKNGAD-VNAVDAIGFTPLHL 86

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.0 bits (113), Expect = 1e-07
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 22/83 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPL++A + GH    LEI+ +                  +  GF+PLHLA    H ++  
Sbjct: 49  TPLYLATAHGH----LEIVEVLLKNGADVNAV-------DAIGFTPLHLAAFIGHLEIAE 97

Query: 89  RLIDVDRNLVRVQGREGVTPLHY 111
            L+    + V  Q + G T    
Sbjct: 98  VLLKHGAD-VNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 21/63 (33%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           TPLH+AA +GH    LEI  +          +       +++G +   +++ N +  +  
Sbjct: 82  TPLHLAAFIGH----LEIAEVLLKHGADVNAQ-------DKFGKTAFDISIGNGNEDLAE 130

Query: 89  RLI 91
            L 
Sbjct: 131 ILQ 133

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 23/92 (25%)

Query: 39  TPLHIAASMGHVNFALEIMRL-----------------KPSFARKQNQYGFSPLHLALQN 81
           T LHIA            + L                 +P        +G  PL LA   
Sbjct: 95  TALHIAIERRC----KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT 150

Query: 82  SHTQMVLRLIDVDRNL--VRVQGREGVTPLHY 111
           +   +V  L +       +R Q   G T LH 
Sbjct: 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 36/137 (26%)

Query: 7   LAAQAGNVDALYELI-----------WEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALE 55
           +A +      +  L+                  D+     F + PL +AA          
Sbjct: 99  IAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ----PH 154

Query: 56  IMRL----KPSFA--RKQNQYGFSPLHLALQNSH---------TQMVLRLIDVDRNL--- 97
           I+          A  R+Q+  G + LH  +  +          T+M   L+     L   
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD 214

Query: 98  ---VRVQGREGVTPLHY 111
                +   +G++PL  
Sbjct: 215 TNLEALLNNDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 37/138 (26%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVD--------TPLHIAA---SMGHVNFA--- 53
               G+ D L  L+   ++LL    R+   +        T L  A    S G  +     
Sbjct: 12  IVSRGSPDGLEGLL---SFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 54  LEIMRLKPSFARKQN-------QYGFSPLHLALQNSHTQMVLRLI----DVD-------- 94
           L+I     +     N         G + LH+A++      V  L+    DV         
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF 128

Query: 95  -RNLVRVQGREGVTPLHY 111
                      G  PL  
Sbjct: 129 QPKDEGGYFYFGELPLSL 146

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 15/68 (22%)

Query: 39  TPLHIAASMGH-----VNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSH 83
           T LH   ++         F  ++  L            +     N  G SPL +A +   
Sbjct: 178 TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237

Query: 84  TQMVLRLI 91
             +   +I
Sbjct: 238 IGIFQHII 245

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 16/81 (19%)

Query: 38  DTPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
              L  AA+ G     +E +R        P+     N YG  P+ + +     ++   L+
Sbjct: 13  ADWLATAAARGR----VEEVRALLEAGANPN---APNSYGRRPIQVMMMG-SARVAELLL 64

Query: 92  DVDRNLVRVQGREGVT-PLHY 111
                         +T P+H 
Sbjct: 65  LHGAE-PNCADPATLTRPVHD 84

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 19/79 (24%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            P+H AA  G     L+ + +      +      ++ +G  P+ LA +  H  +   L  
Sbjct: 80  RPVHDAAREGF----LDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYLRA 132

Query: 93  VDRNLVRVQGREGVTPLHY 111
                       G      
Sbjct: 133 AAGGT------RGSNHARI 145

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 16/81 (19%)

Query: 38  DTPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
           D  L  AA+ G     +E +R        P+     N++G  P+ + +     Q+   L+
Sbjct: 13  DAGLATAAARGQ----VETVRQLLEAGADPN---ALNRFGRRPIQVMMMG-SAQVAELLL 64

Query: 92  DVDRNLVRVQGREGVT-PLHY 111
                         +T P+H 
Sbjct: 65  LHGAE-PNCADPATLTRPVHD 84

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.5 bits (109), Expect = 3e-07
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 19/113 (16%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL------ 59
             AA  G V+ + +L+   A   + ++R  F   P+ +   MG      ++  L      
Sbjct: 17  ATAAARGQVETVRQLLEAGADP-NALNR--FGRRPIQVMM-MGS----AQVAELLLLHGA 68

Query: 60  KPSFARKQNQYGF-SPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           +P+     +      P+H A +      ++ L       + V    G  P+  
Sbjct: 69  EPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 13/60 (21%)

Query: 39  TPLHIAASMGHVNFALEIMRL------KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            P+H AA  G     L+ + +      +       + +G  P+ LA +  H  +   L  
Sbjct: 80  RPVHDAAREGF----LDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 12/57 (21%)

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLI----DVDRNLVRVQGREGVTPLHY---GNVD 115
                  + L  A      + V +L+    D +        R G  P+     G+  
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPN-----ALNRFGRRPIQVMMMGSAQ 58

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD----TPLHIAASMGHVNFALEIMRL-- 59
            +AA  G   AL  L      LL   + V  +         +AA  GH    L ++    
Sbjct: 97  FVAAITGCSSALDTLC----LLLTSDEIVKVIQAENYQAFRLAAENGH----LHVLNRLC 148

Query: 60  ----KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHY 111
                   A  Q +  +    LA +N H  ++ RL ++         + E      +
Sbjct: 149 ELAPTEIMAMIQAE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPS 62
           +L     + +   + +W DA       +    +    +AA  G  + AL+ + L      
Sbjct: 66  LLCLYYAHYNRNAKQLWSDA-----HKKGIKSEVICFVAAITGCSS-ALDTLCLLLTSDE 119

Query: 63  FARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRV-QGREGVTPLHY 111
             +      +    LA +N H  ++ RL ++    +      E       
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
            LAA+ G++  L  L  E A                 +AA  GH++    +  L P+ A 
Sbjct: 133 RLAAENGHLHVLNRLC-ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 66  K--QNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
              Q +  ++    A+   H  ++  L+D    L
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 17/117 (14%)

Query: 8   AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR-- 65
           A +  N D +++L+ +   L             L            L+ +R   S     
Sbjct: 257 AFKLSNPDGVFDLVTKSECLQGF--------YMLRNLIRRND-EVLLDDIRFLLSIPGIK 307

Query: 66  ------KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDL 116
                          L LAL+  +      L+ +   L   +          G +DL
Sbjct: 308 ALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDL 364

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
            +AA AG  + +  L+ + A             TPLH AAS      A  ++    +   
Sbjct: 78  HIAASAGXDEIVKALLVKGA---HVNAVNQNGCTPLHYAASKNRHEIA-VMLLEGGANPD 133

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYG 112
            ++ Y  + +H A    + +MV  L+    +   +Q  EG TPLH  
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLA 179

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 22/84 (26%)

Query: 39  TPLHIAASMGHVNFALEIMRL----------KPSFARKQNQYGFSPLHLALQNSHTQMVL 88
           T LH A S GH     EI+            K       +  G+SPLH+A      ++V 
Sbjct: 42  TALHWACSAGH----TEIVEFLLQLGVPVNDK-------DDAGWSPLHIAASAGXDEIVK 90

Query: 89  RLIDVDRNLVRVQGREGVTPLHYG 112
            L+    + V    + G TPLHY 
Sbjct: 91  ALLVKGAH-VNAVNQNGCTPLHYA 113

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 39  TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
              ++A S        E+        S A + +Q   + LH A    HT++V  L+ +  
Sbjct: 9   MICNLAYSGKL----DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 96  NLVRVQGREGVTPLHY 111
             V  +   G +PLH 
Sbjct: 65  P-VNDKDDAGWSPLHI 79

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
            AA     +    L+   A   +   +  +  T +H AA+ G++     I+    +    
Sbjct: 112 YAASKNRHEIAVMLLEGGA---NPDAKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNI 167

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGN 113
           Q+  G +PLHLA      +    L+    + + ++ +E  TPL    
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAK 213

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 3   HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPS 62
           H  +  A   ++  +  +I    +L D        +T LH AA     +    +++ +  
Sbjct: 195 HLAVKVANQASLPLVDFIIQNGGHL-DAKA--ADGNTALHYAALYNQPDCLKLLLKGRAL 251

Query: 63  FARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
                N+ G + L +A +  H +    L      
Sbjct: 252 -VGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 39  TPLHIAASMGHVNF--ALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
           T LH+A           ++ +        KQ   G + LH      + + +  L+   + 
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKA 229

Query: 97  LVRVQGREGVTPLHY 111
            + +    G TPL  
Sbjct: 230 SIEIANESGETPLDI 244

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 3   HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPS 62
           H  + +    ++  +  L+      LD+        T LH      +      ++R K S
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSG-NLDKQTGKG--STALHYCCLTDNAECLKLLLRGKAS 230

Query: 63  FARKQNQYGFSPLHLALQNSHTQMVLRLI 91
                N+ G +PL +A +  H      L 
Sbjct: 231 -IEIANESGETPLDIAKRLKHEHCEELLT 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	80.77

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.3e-33  Score=171.78  Aligned_cols=140  Identities=26%  Similarity=0.324  Sum_probs=128.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .+.|+.|++.|+.++|+.|++.|+++ +.++.  .|.|||++|+..++.+++++|++.++++ +.+|..|.||||+|+..
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~--~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADV-NASDS--DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC--CCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHc
Confidence            46799999999999999999999987 55554  4999999999999999999999999988 67899999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.|++ ++.++..|+|||++    ++.++++.|+. .|++++.+|..|.||||+|+++..
T Consensus        81 g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           81 GHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCC
Confidence            999999999999999 99999999999998    99999966665 689999999999999999998754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=176.28  Aligned_cols=142  Identities=21%  Similarity=0.229  Sum_probs=129.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||+|+..|+.++|++|++.++++ ...+.  .|.||+++|+..++.++++.|++.++++ +..|..|.||||+|+..
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~--~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANA-GARNA--DQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCT--TCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCc-CccCC--CCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence            48999999999999999999999886 44443  4899999999999999999999999988 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCCCc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSPIF  149 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  149 (151)
                      |+.+++++|++.|++ ++..+..|.||||+    ++.++++.|+. .|++++.+|..|.||||+|++++++.
T Consensus       163 g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~i~  232 (269)
T 4b93_B          163 GHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIM  232 (269)
T ss_dssp             TCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCHHH
T ss_pred             CCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCcHH
Confidence            999999999999999 99999999999998    99999966665 68999999999999999999887643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-30  Score=157.32  Aligned_cols=139  Identities=21%  Similarity=0.286  Sum_probs=126.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +++|+.|++.|+.+++++|++.++...  .+  ..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TD--WLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CC--TTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            589999999999999999999998653  23  24899999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++++.++..|.||+|+|+++..
T Consensus        78 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           78 GHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCC
Confidence            999999999999999 99999999999998    89999966666 589999999999999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=7.6e-30  Score=157.57  Aligned_cols=140  Identities=20%  Similarity=0.174  Sum_probs=127.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      +|||.|+..|+.+.++++++.++...+..+.  .|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDE--RGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT--TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            6899999999999999999999886566664  4999999999999999999999999887 677899999999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++++.++..|.||+|+|+++..
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGY  147 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCc
Confidence            99999999999999 99999999999998    99999966665 589999999999999999988653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.2e-29  Score=155.17  Aligned_cols=140  Identities=24%  Similarity=0.308  Sum_probs=126.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++|+.|++.|+.++|++|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADV-NAEDA--SGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            37899999999999999999999886 44443  4899999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.+++++|++.|++ ++..+..|.|||+.    ++.+++++|+. .|++++.++..|.||+++|+++..
T Consensus        91 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           91 GHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCC
Confidence            999999999999999 99999999999998    99999966666 588999999999999999998754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=9.6e-30  Score=156.42  Aligned_cols=140  Identities=21%  Similarity=0.122  Sum_probs=126.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +||||.|+..|+.+++++|++.+..+ +..+.  .|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVI-NHTDE--EGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCc-CCCCC--CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            47999999999999999999999775 44453  4899999999999999999999998887 66789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.+++++|++.|++ ++..+..|.|||+.    ++.+++++|+. .|++++.++..|.||+|+|+++..
T Consensus        80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCc
Confidence            999999999999999 99999999999998    89999977766 688999999999999999987653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=5.4e-30  Score=156.71  Aligned_cols=140  Identities=16%  Similarity=0.261  Sum_probs=126.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++|+.|++.|+.+++++|++.+.++ +..+.  .|.||||+|+. ++.+++++|++.+.++ +..+..|.||||+|+..
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~--~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNV-NAQNG--FGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT--TSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCc-cccCc--cCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            58999999999999999999999876 44443  48999999999 9999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.|++ ++..+..|.|||++    ++.+++++|+......++.++..|.||+|+|+++..
T Consensus        81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            999999999999999 99999999999998    999999888887655578999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.5e-29  Score=153.63  Aligned_cols=138  Identities=22%  Similarity=0.234  Sum_probs=124.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +++|+.|++.|+.+++++|++.++......+.  .|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG--RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccccc--CCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence            47999999999999999999977644344443  4889999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      ++.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++.+.++..|.||+|+|.+
T Consensus        86 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           86 GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT
T ss_pred             CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc
Confidence            999999999999999 99999999999998    99999977665 589999999999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.3e-29  Score=159.02  Aligned_cols=140  Identities=19%  Similarity=0.181  Sum_probs=127.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.++++ +..+..|.||||+|+..
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKL-EDKDI--EGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcccc-ccccc--cCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHc
Confidence            48999999999999999999998876 44443  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++++.++..|.||+|+|+++..
T Consensus       112 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          112 GYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             TCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCc
Confidence            999999999999999 99999999999998    99999977765 589999999999999999998754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=6.5e-29  Score=154.36  Aligned_cols=139  Identities=20%  Similarity=0.234  Sum_probs=124.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++|+.|+..|+.+++++|++.++...+..+.  .|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDD--HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCC--CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            36799999999999999999997664455554  4999999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ++.+++++|++.|++ ++..+..|.|||++    ++.++++.|+. .|++++.++..|.||+++|++.
T Consensus        83 ~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           83 GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHH
T ss_pred             CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHH
Confidence            999999999999999 99999999999998    89999966665 5899999999999999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=7.9e-29  Score=150.72  Aligned_cols=139  Identities=22%  Similarity=0.296  Sum_probs=123.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++|+.|+..|+.+++++|++......+..+.  .|.||||+ +..|+.+++++|++.|.++ +..+..|.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNR--FGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT--TSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCC--CCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            47999999999999999999993222244443  49999999 9999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.|++ ++..+..|.|||+.    ++.+++++|+..  ++++.++..|.||+|+|+++..
T Consensus        79 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           79 GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             CcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc
Confidence            999999999999999 99999999999998    999999877776  7999999999999999998754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.6e-28  Score=157.59  Aligned_cols=138  Identities=19%  Similarity=0.151  Sum_probs=90.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhC--hhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHh
Q 048410            3 HYVILAAQAGNVDALYELIWED--AYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      ||||.|+..|+.+++++|++.+  +++ ...+.  .|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+.
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~  149 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPLKPDL-NKITN--QGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAAS  149 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCc--CCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHH
Confidence            5666666666666666666665  332 22222  3667777777777777777777766665 4556667777777777


Q ss_pred             cCCHHHHHHHHhhc-cccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           81 NSHTQMVLRLIDVD-RNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        81 ~~~~~~~~~ll~~~-~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      .|+.+++++|++.| ++ ++..+..|.|||++    ++.+++++|++..|++++.+|..|.||+++|++.
T Consensus       150 ~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          150 VGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             TTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             cCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            77777777777776 44 66677777777776    6777776666556677777777777777776543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=1.6e-28  Score=158.08  Aligned_cols=141  Identities=22%  Similarity=0.278  Sum_probs=123.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHh-ChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc----ccCCCCCCcHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWE-DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA----RKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~~t~L~   76 (151)
                      +||||.|++.|+.+++++|++. +.++ +..+.  .|.||||+|+..|+.+++++|++.+++..    +..+..|.||||
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFEGCEV-HQRGA--MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCC--CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            5899999999999999999998 6665 55553  49999999999999999999999987753    345678999999


Q ss_pred             HHHhcCCHHHHHHHHhhccccccccCC-------------CCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcc
Q 048410           77 LALQNSHTQMVLRLIDVDRNLVRVQGR-------------EGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILL  139 (151)
Q Consensus        77 ~a~~~~~~~~~~~ll~~~~~~~~~~~~-------------~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l  139 (151)
                      +|+..|+.+++++|++.|++ ++..+.             .|.|||+.    ++.+++++|+. .|++++.+|..|.|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHH
Confidence            99999999999999999998 777765             79999998    99999977765 5899999999999999


Q ss_pred             ccccccCC
Q 048410          140 PFSSKFSP  147 (151)
Q Consensus       140 ~~a~~~~~  147 (151)
                      |+|+...+
T Consensus       159 ~~A~~~~~  166 (232)
T 2rfa_A          159 HILILQPN  166 (232)
T ss_dssp             HHHHTCSC
T ss_pred             HHHHHcCC
Confidence            99998754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=5.4e-29  Score=164.36  Aligned_cols=142  Identities=20%  Similarity=0.223  Sum_probs=127.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHH-----hcCCHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAA-----SMGHVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      .||||.|+..|+.+++++|++.|+...+..+.  .|.|||++|+     ..++.++++.|++.+... ...+..|.||||
T Consensus       112 ~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh  188 (276)
T 4hbd_A          112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNR--AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALM  188 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT--TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC--CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            48999999999999999999999843355554  4999999999     567899999999999776 667888999999


Q ss_pred             HHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           77 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        77 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +|+..|+.+++++|++.|++ ++.+|..|.|||++    ++.++++.|+...|++++.+|..|.||||+|++++.
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence            99999999999999999999 99999999999998    999999888876899999999999999999998753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=2.3e-28  Score=154.20  Aligned_cols=139  Identities=16%  Similarity=0.170  Sum_probs=80.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|++.|+.+++++|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..+
T Consensus        41 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  117 (201)
T 3hra_A           41 TPLNIAVHNNDIEIAKALIDRGADI-NLQNS--ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG  117 (201)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC
Confidence            5666666666666666666666554 22222  25666666666666666666664444333455566666666666666


Q ss_pred             CHHHHHHHHhhc-cccccccCCCCCCcccc----cC-----HHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           83 HTQMVLRLIDVD-RNLVRVQGREGVTPLHY----GN-----VDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        83 ~~~~~~~ll~~~-~~~~~~~~~~~~t~l~~----~~-----~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      +.+++++|++.+ ++ ++..+..|.|||+.    +.     .+++++|+. .|++++.++..|.||+|+|+++.
T Consensus       118 ~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~  189 (201)
T 3hra_A          118 HIDNVKLLLEDGRED-IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKG  189 (201)
T ss_dssp             CHHHHHHHHHHCCCC-TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCC-cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcC
Confidence            666666666665 34 56666666666665    33     555544433 35666666666666666665543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=2.6e-28  Score=156.18  Aligned_cols=138  Identities=23%  Similarity=0.185  Sum_probs=82.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.++...+..+..|.||||+|+..+
T Consensus        27 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  103 (223)
T 2f8y_A           27 TALHLAARYSRSDAAKRLLEASADA-NIQDN--MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  103 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             chHHHHHHcCCHHHHHHHHHcCCCC-CCcCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Confidence            5667777777777777777666654 33332  25666666666666666666666655333455556666666666666


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      +.+++++|++.+++ ++..+..|.|||+.    ++.+++++|+.. |++++.++..|.||+|+|+++
T Consensus       104 ~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A          104 VEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAARE  168 (223)
T ss_dssp             CHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHc
Confidence            66666666666655 55566666666665    556666444443 556666666666666665544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=4.8e-28  Score=155.35  Aligned_cols=139  Identities=19%  Similarity=0.177  Sum_probs=69.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhC--CCccccCCCCCCcHHHHHHh
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK--PSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~t~L~~a~~   80 (151)
                      ||||.|++.|+.+++++|++.++......+.  .|.||||+|+..|+.+++++|++.+  .+.....+..|.||||+|+.
T Consensus         4 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHhCCHHHHHHHHhcCccccccCCC--CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            4555555555555555555555554333332  2555555555555555555555555  22211134455555555555


Q ss_pred             cCCHHHHHHHHhhc--cccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           81 NSHTQMVLRLIDVD--RNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        81 ~~~~~~~~~ll~~~--~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      .|+.+++++|++.|  ++ ++..+..|.|||+.    ++.+++++|+. .|++++.++..|.||||+|+++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  150 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASV  150 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHH-cCCCccccCCCCCCHHHHHHHc
Confidence            55555555555554  33 44445555555554    44555533333 2445555555555555555443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=5.6e-28  Score=148.90  Aligned_cols=124  Identities=27%  Similarity=0.341  Sum_probs=107.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|||+.|+..|+.++++.|++.|.++ +.++.  .|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..
T Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~--~g~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~  113 (169)
T 4gpm_A           38 RTPLHHAAENGHKEVVKLLISKGADV-NAKDS--DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAEN  113 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccch-hhhcc--CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHc
Confidence            48999999999999999999999987 45553  4999999999999999999999999988 77899999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQV  131 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~  131 (151)
                      |+.+++++|++.|++ ++.+|..|.|||++    ++.+++ .+|...|++++..
T Consensus       114 g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv-~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          114 GHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVV-KLLEKQGGWLEHH  165 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHH-HHHHTC-------
T ss_pred             CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHH-HHHHHCCCCcCCC
Confidence            999999999999999 99999999999998    899999 5555678888763

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=6.7e-28  Score=152.08  Aligned_cols=143  Identities=19%  Similarity=0.189  Sum_probs=127.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++|+.|+..|+.+.+++++..++...+..+.  .|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDT--EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            37999999999999999999998843355554  4899999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.++..++..+..|.|||+.    ++.+++++|+...+++++.++..|.||||+|+.+.+
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence            999999999966554389999999999998    999999999988779999999999999999997764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=1.9e-28  Score=159.78  Aligned_cols=137  Identities=23%  Similarity=0.192  Sum_probs=71.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.|.++ +..+.  .|.||||+|+..++.+++++|++.++...+..+..|.||||+|+..+
T Consensus        59 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  135 (253)
T 1yyh_A           59 TALHLAARYSRSDAAKRLLEASADA-NIQDN--MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  135 (253)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcC
Confidence            5666666666666666666666554 22222  25566666666666666666555554322444444555555555555


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      +.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++++.++..|.||||+|++
T Consensus       136 ~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~  199 (253)
T 1yyh_A          136 VEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAR  199 (253)
T ss_dssp             CSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence            55555555555444 44444455555544    44444433332 244444444455555554443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=2.9e-28  Score=157.33  Aligned_cols=141  Identities=22%  Similarity=0.183  Sum_probs=121.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCc-----cccCCCCCCcHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF-----ARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~t~L~   76 (151)
                      .||||.|+..|+.+++++|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.+...     .+..+..|.||||
T Consensus        46 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           46 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDF--RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  122 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT--TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC--CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence            47999999999999999999998876 44443  4899999999999999999999988642     3566888999999


Q ss_pred             HHHhcCCHHHHHHHHhhccccccccCC-CCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           77 LALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        77 ~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +|+..|+.+++++|++.|++ ++..+. .|.|||++    ++.+++++|+. .|++++.++..|.||+|+|+++..
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCc
Confidence            99999999999999999999 888887 89999998    88999966665 588999999999999999987653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.4e-27  Score=153.78  Aligned_cols=139  Identities=17%  Similarity=0.131  Sum_probs=118.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      |+||.|+..|+.+++++|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~--~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g   98 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDP-SQPNE--EGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCN   98 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            7899999999999999999999886 44443  4999999999999999999999999887 677999999999999999


Q ss_pred             CHHHHHHHHhhccccccccC-CCCCCcccc------cCHHHHHHHHHh-----------------------------CCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQG-REGVTPLHY------GNVDLLYKFLAA-----------------------------CPE  126 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~------~~~~~~~~ll~~-----------------------------~~~  126 (151)
                      +.+++++|++.|++ ++..+ ..|.|||++      ++.+++++|+..                             .|+
T Consensus        99 ~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga  177 (229)
T 2vge_A           99 DTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGE  177 (229)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTC
T ss_pred             CHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccc
Confidence            99999999999999 88876 699999996      788999777663                             122


Q ss_pred             C--cccccccCCCccccccccC
Q 048410          127 S--ILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       127 ~--~~~~~~~g~t~l~~a~~~~  146 (151)
                      +  ++.+|..|.||||+|++++
T Consensus       178 ~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          178 SVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             EEEEEESSCTTCSSEEEEEETT
T ss_pred             cccccccCCCcccHHHHHHHcC
Confidence            3  3445666788888877654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=7.2e-28  Score=154.88  Aligned_cols=136  Identities=21%  Similarity=0.229  Sum_probs=55.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+..+
T Consensus        42 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           42 TALHWACSAGHTEIVEFLLQLGVPV-NDKDD--AGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKN  117 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHcCcHHHHHHHHHhCCCC-CCcCC--CCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            3444444444444444444444332 22221  1344444444444444444444444333 233334444444444444


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      +.+++++|++.|++ ++..+..|.|||+.    ++.+++++|+. .|++++.++..|.||||+|++
T Consensus       118 ~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~  181 (231)
T 3aji_A          118 RHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACD  181 (231)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHH
Confidence            44444444444443 33444444444443    44444433222 233444444444444444443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=2.9e-28  Score=158.92  Aligned_cols=141  Identities=18%  Similarity=0.106  Sum_probs=126.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.++......+.  .|.||||+|+..++.+++++|++.++++ +..+..|.||||+|+..
T Consensus        91 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~  167 (253)
T 1yyh_A           91 RTPLHAAVSADAQGVFQILIRNRATDLDARMH--DGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAV  167 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT--TCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCC--CCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            48999999999999999999998844455553  4899999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.|++ ++..+..|.|||++    ++.++++.|+. .|++++.+|..|.||+++|++...
T Consensus       168 ~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          168 NNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCC
Confidence            999999999999999 99999999999998    99999966655 688999999999999999988653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=1.9e-28  Score=153.22  Aligned_cols=139  Identities=10%  Similarity=0.048  Sum_probs=119.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCH----HHHHHHHHhCCCccccCCCCCCcHHHHH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHV----NFALEIMRLKPSFARKQNQYGFSPLHLA   78 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~t~L~~a   78 (151)
                      ++|+.|++.|+.+.++.++..+........    |.||||+|+..++.    +++++|++.|+++ +.++..|.||||+|
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~----g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDKESVL----KSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCHHHHH----TTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccccccC----CCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            568999999999999999998876433232    89999999999975    5899999999998 77799999999999


Q ss_pred             HhcCC------HHHHHHHHhhccccccccCCCCC-Ccccc----c-----CHHHHHHHHHhCCCCcccccccCCCccccc
Q 048410           79 LQNSH------TQMVLRLIDVDRNLVRVQGREGV-TPLHY----G-----NVDLLYKFLAACPESILQVTIYFPILLPFS  142 (151)
Q Consensus        79 ~~~~~------~~~~~~ll~~~~~~~~~~~~~~~-t~l~~----~-----~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a  142 (151)
                      +..++      .+++++|++.|++ ++.+|..|. ||||+    +     ..++++.|+...|++++.+|..|.||||+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            99886      6789999999999 999999999 99998    1     245775555548999999999999999999


Q ss_pred             cccCC
Q 048410          143 SKFSP  147 (151)
Q Consensus       143 ~~~~~  147 (151)
                      +++..
T Consensus       162 ~~~~~  166 (186)
T 3t8k_A          162 KRCQK  166 (186)
T ss_dssp             HTTTC
T ss_pred             HHcCC
Confidence            98754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.5e-27  Score=153.54  Aligned_cols=143  Identities=22%  Similarity=0.165  Sum_probs=121.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhh--cCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCC----------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQI--DRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQ----------   69 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~--~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~----------   69 (151)
                      .||||.|+..|+.+++++|++.++++....  ..+..|.||||+|+..|+.+++++|++.+++. +..+.          
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~  116 (232)
T 2rfa_A           38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHN  116 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccc
Confidence            489999999999999999999999864321  11134899999999999999999999999887 34333          


Q ss_pred             ---CCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHH----HHHHHhCCCCc------cccc
Q 048410           70 ---YGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLL----YKFLAACPESI------LQVT  132 (151)
Q Consensus        70 ---~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~----~~ll~~~~~~~------~~~~  132 (151)
                         .|.||||+|+..|+.+++++|++.|++ ++.+|..|.|||++    ++.+++    +.|+. .|++.      +.++
T Consensus       117 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~  194 (232)
T 2rfa_A          117 LIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPN  194 (232)
T ss_dssp             SCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCC
Confidence               799999999999999999999999999 99999999999998    777776    55555 56666      5788


Q ss_pred             ccCCCccccccccCC
Q 048410          133 IYFPILLPFSSKFSP  147 (151)
Q Consensus       133 ~~g~t~l~~a~~~~~  147 (151)
                      ..|.||||+|++...
T Consensus       195 ~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          195 NQGLTPFKLAGVEGN  209 (232)
T ss_dssp             TTSCCHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCC
Confidence            999999999998653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=1.2e-27  Score=153.76  Aligned_cols=141  Identities=24%  Similarity=0.315  Sum_probs=127.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +++|+.|++.|+.+.++++++.++......+.  .|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCC--CCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence            57899999999999999999999876566554  4999999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.|++ ++..+..|.|||+.    ++.+++++|+. .|++.+.++..|.||||+|+++.+
T Consensus        84 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A           84 GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCC
Confidence            999999999999999 89999999999998    89999966665 688999999999999999987653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=5.1e-28  Score=159.52  Aligned_cols=78  Identities=23%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCC-CCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccc
Q 048410           67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPF  141 (151)
Q Consensus        67 ~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~  141 (151)
                      .+..|.||||+|+..|+.+++++|++.|++ ++..+. .|.||||+    ++.+++++|+. .|++++.++..|.||||+
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGS  231 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHH
Confidence            344555666666666666666666666665 555553 36666665    66666644444 356666666666666666


Q ss_pred             ccccC
Q 048410          142 SSKFS  146 (151)
Q Consensus       142 a~~~~  146 (151)
                      |+++.
T Consensus       232 A~~~~  236 (282)
T 1oy3_D          232 ALLRP  236 (282)
T ss_dssp             HHTSS
T ss_pred             HHHcC
Confidence            66543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=1.3e-27  Score=152.96  Aligned_cols=141  Identities=18%  Similarity=0.106  Sum_probs=126.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.++......+.  .|.||||+|+..++.+++++|++.+++. +..+..|.||||+|+..
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  135 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNRATDLDARMH--DGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAV  135 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT--TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHc
Confidence            48999999999999999999998854455553  4899999999999999999999999887 66788999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++.+.++..|.||+++|+++..
T Consensus       136 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          136 NNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcc
Confidence            999999999999999 99999999999998    99999966665 588999999999999999988653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=1.2e-27  Score=154.34  Aligned_cols=140  Identities=18%  Similarity=0.135  Sum_probs=95.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.++......+.  .|.||||+|+..++.+++++|++.+.++ +..+..|.||||+|+..|
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD--GGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCC
Confidence            5666666666666666666666332233332  3667777777777777777777776665 555667777777777777


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+++++|++.|++ ++..+..|.|||++    ++.++++.|+. .|++++.+|..|.||+|+|+++++
T Consensus       156 ~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          156 CVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHH
Confidence            77777777777777 77777777777776    67777744444 467777777777777777776653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=1.8e-28  Score=160.00  Aligned_cols=143  Identities=16%  Similarity=0.087  Sum_probs=122.6

Q ss_pred             CHHHHHHHHc---CCHHHHHHHHHhChhhhhhh--------cCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCC
Q 048410            2 SHYVILAAQA---GNVDALYELIWEDAYLLDQI--------DRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQY   70 (151)
Q Consensus         2 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~--------~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   70 (151)
                      .||||.|+..   |+.+++++|++.|++.....        +.+..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus        44 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~  122 (256)
T 2etb_A           44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACG  122 (256)
T ss_dssp             BCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCS
T ss_pred             CCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccc
Confidence            4899999999   99999999999998763221        11124899999999999999999999999887 555654


Q ss_pred             -------------CCcHHHHHHhcCCHHHHHHHHh---hccccccccCCCCCCcccc------cCHH-------HHHHHH
Q 048410           71 -------------GFSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHY------GNVD-------LLYKFL  121 (151)
Q Consensus        71 -------------~~t~L~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~t~l~~------~~~~-------~~~~ll  121 (151)
                                   |.||||+|+..|+.+++++|++   .|++ ++.++..|.||||+      ++.+       +++.|+
T Consensus       123 ~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll  201 (256)
T 2etb_A          123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL  201 (256)
T ss_dssp             GGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHH
Confidence                         9999999999999999999999   8998 99999999999998      5666       886666


Q ss_pred             HhCCCCc-------ccccccCCCccccccccCC
Q 048410          122 AACPESI-------LQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       122 ~~~~~~~-------~~~~~~g~t~l~~a~~~~~  147 (151)
                      . .|+++       +.+|..|.||||+|++...
T Consensus       202 ~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          202 Q-MGARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             H-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             H-cCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence            5 47888       8899999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=3e-28  Score=148.35  Aligned_cols=136  Identities=15%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCc-HHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFS-PLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t-~L~~a~~   80 (151)
                      .|+||.|++.|+.+++++|++.|.++ +..+.  .|.||||+|+ .|+.+++++|++.+.++ +..+..|.| |||+|+.
T Consensus        13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           13 ADWLATAAARGRVEEVRALLEAGANP-NAPNS--YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   87 (156)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS--SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHH
Confidence            58999999999999999999999876 44443  4999999985 89999999999999887 677999999 9999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      .|+.+++++|++.|++ ++.++..|.|||++    ++.+++++| ...|++++.++..|.|+.+.+..
T Consensus        88 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~L-l~~ga~~~~~~~~g~t~~~~~~~  153 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYL-RAAAGGTRGSNHARIDAAEGPSD  153 (156)
T ss_dssp             HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHH-SSCC-------------------
T ss_pred             CCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHH-HHcCCCCCccCcCcCcccccCCC
Confidence            9999999999999999 99999999999998    999999555 55699999999999999875543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=6.4e-28  Score=162.66  Aligned_cols=140  Identities=11%  Similarity=0.042  Sum_probs=119.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCC---HHHHHHHHHhCCCccccCCCCCCcHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGH---VNFALEIMRLKPSFARKQNQYGFSPLHLA   78 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~t~L~~a   78 (151)
                      .||||+|+..|+.++|++|++.|+++ +..+.  .|.||||+|+..|+   .++++.|++.+....+..+..|.||||+|
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~--~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A  208 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDN--MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI  208 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT--TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC--CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHH
Confidence            48999999999999999999999987 45553  49999999999998   67778888877444477899999999999


Q ss_pred             Hh----cCCHHHHHHHHhhcc---------------------------------------------ccccccCCCCCCcc
Q 048410           79 LQ----NSHTQMVLRLIDVDR---------------------------------------------NLVRVQGREGVTPL  109 (151)
Q Consensus        79 ~~----~~~~~~~~~ll~~~~---------------------------------------------~~~~~~~~~~~t~l  109 (151)
                      +.    .|+.+++++|++.++                                             . ++.++..|.|||
T Consensus       209 ~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~-~n~~d~~G~TpL  287 (327)
T 1sw6_A          209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-LNAQDSNGDTCL  287 (327)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT-TTCCCTTSCCHH
T ss_pred             HHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhC-CCCCCCCCCCHH
Confidence            99    899999999998753                                             3 677888999999


Q ss_pred             cc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410          110 HY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       110 ~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      |+    ++.++++.|+. .|++++.+|..|.||||+|++++
T Consensus       288 h~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          288 NIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence            98    99999966664 68999999999999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=158.13  Aligned_cols=137  Identities=20%  Similarity=0.216  Sum_probs=103.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.++++... +   .|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~  201 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASVQPE-S---DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQ  201 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCS-C---TTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTT
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCCCCC-C---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            5666677767777777776666654221 1   2678888888888888888888877776 566788888888888888


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+++++|++.|++ ++. +..|.|||++    ++.+++++|+. .|++++.+|..|.||+|+|++..+
T Consensus       202 ~~~~v~~Ll~~ga~-~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~  267 (285)
T 3d9h_A          202 QRACVKKLLESGAD-VNQ-GKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVPPESP  267 (285)
T ss_dssp             CHHHHHHHHHTTCC-TTC-CBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTSH
T ss_pred             cHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCccH
Confidence            88888888888887 664 7788888887    88888866655 578888888889999998886543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=4.4e-27  Score=151.72  Aligned_cols=137  Identities=24%  Similarity=0.271  Sum_probs=64.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~   83 (151)
                      |||.|+..|+.+++++|++.|..+ ...+.  .|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..++
T Consensus        47 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  123 (237)
T 3b7b_A           47 PLMEAAENNHLEAVKYLIKAGALV-DPKDA--EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH  123 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCC-CCCCT--TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCC-CCCCC--CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Confidence            444444444444444444444332 11111  244444444444444444444444422223344445555555555555


Q ss_pred             HHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           84 TQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      .+++++|++.|++ ++..+..|.|||+.    ++.+++++|+. .|++++.++..|.||||+|+++
T Consensus       124 ~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  187 (237)
T 3b7b_A          124 VDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARE  187 (237)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHh
Confidence            5555555555554 45555555555554    55555533332 3455555555555555555544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=5.7e-27  Score=155.84  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=42.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ++|+.|+..|+.++|++|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus        42 t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           42 AVFLAACSSGDTEEVLRLLERGADI-NYANV--DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCT-TCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCC-cccCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcC
Confidence            3455555555555555555554443 22221  2445555555555555555555444443 333444444444444444


Q ss_pred             CHHHHHHHHhhccc
Q 048410           83 HTQMVLRLIDVDRN   96 (151)
Q Consensus        83 ~~~~~~~ll~~~~~   96 (151)
                      +.+++++|++.|++
T Consensus       118 ~~~~v~~Ll~~g~~  131 (299)
T 1s70_B          118 YLDIAEYLISQGAH  131 (299)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHhCCCC
Confidence            44444444444444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=6.7e-27  Score=155.51  Aligned_cols=138  Identities=22%  Similarity=0.215  Sum_probs=120.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcccc---------------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK---------------   66 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~---------------   66 (151)
                      .||||.|+..|+.+++++|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.++++...               
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~--~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  150 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGANI-NQPDN--EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA  150 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC--CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc
Confidence            48999999999999999999999886 44443  4899999999999999999999998765211               


Q ss_pred             --------------------------------------------CCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccC
Q 048410           67 --------------------------------------------QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQG  102 (151)
Q Consensus        67 --------------------------------------------~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~  102 (151)
                                                                  .+..|.||||+|+..|+.+++++|++.|++ ++..+
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d  229 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKD  229 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCC
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcC
Confidence                                                        224578999999999999999999999999 99999


Q ss_pred             CCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410          103 REGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus       103 ~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      ..|.|||++    ++.++++.|+. .|++++.+|..|.||+|+|.+
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence            999999998    99999966665 589999999999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=9.1e-27  Score=150.46  Aligned_cols=138  Identities=20%  Similarity=0.126  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhh---hhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCC-CCCCcHHHHH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYL---LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN-QYGFSPLHLA   78 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a   78 (151)
                      ||||.|+..|+.+++++|++.++..   ....+  ..|.||||+|+..++.+++++|++.+.+. +..+ ..|.||||+|
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARN--YDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHA  157 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccC--cCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHH
Confidence            4566666666666666666655410   12222  23667777777777777777777776665 3334 6677777777


Q ss_pred             HhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           79 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      +..|+.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++++.+|..|.||+|+|++.
T Consensus       158 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhc
Confidence            777777777777777777 77777777777776    77777755554 5677777777777777777654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=6.5e-27  Score=155.06  Aligned_cols=138  Identities=19%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.+++. +..+..|.||||+|+..
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~  135 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQGWAV-NIITA--DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS  135 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT--TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC--CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence            36777777777777777777777664 33332  3777777777777777777777777665 55567777777777777


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      |+.+++++|++.++. ++. +..|.|||+.    ++.+++++|+. .|++++.++..|.||||+|+++.
T Consensus       136 ~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~  201 (285)
T 3d9h_A          136 GSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQ  201 (285)
T ss_dssp             TCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTT
T ss_pred             CHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcC
Confidence            777777777777666 443 2346677666    66666644444 45666666667777777666554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=9.8e-27  Score=150.31  Aligned_cols=139  Identities=16%  Similarity=0.134  Sum_probs=89.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCC---ccccCCCCCCcHHHHHH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPS---FARKQNQYGFSPLHLAL   79 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~t~L~~a~   79 (151)
                      ||||.|+..|+.+++++|++.|.++ ...+.  .|.||||+|+..++.+++++|++.++.   ..+..+..|.||||+|+
T Consensus        48 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  124 (241)
T 1k1a_A           48 TPLHLAVITTLPSVVRLLVTAGASP-MALDR--HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV  124 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCc-cccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH
Confidence            5666666666666666666666554 22232  366677777666666666666666651   12445666677777777


Q ss_pred             hcCCHHHHHHHHhhccccccccC-CCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           80 QNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      ..++.+++++|++.|++ ++..+ ..|.|||+.    ++.+++++|+. .|++++.++..|.||||+|+++.
T Consensus       125 ~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          125 NTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC
Confidence            77777777777777666 56655 567777776    66777755554 46677777777777777776544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=5.1e-27  Score=154.73  Aligned_cols=110  Identities=19%  Similarity=0.096  Sum_probs=85.6

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----  111 (151)
                      .|.||||+|+..|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++.|++ ++.++..|.|||++    
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTS
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHc
Confidence            4899999999999999999999999988433334599999999999999999999999999 99999999999998    


Q ss_pred             cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          112 GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.+++++|+ ..|++++.++..|.||+++|....+
T Consensus       236 ~~~~~v~~Ll-~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          236 PNPILARLLR-AHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             SCHHHHHHHH-HTTCCCCCCC---------------
T ss_pred             CCcHHHHHHH-HcCCCcCcCCCcccccccccCCccc
Confidence            9999995555 5689999999999999999876543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=3.8e-27  Score=156.19  Aligned_cols=136  Identities=17%  Similarity=0.189  Sum_probs=103.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|+++ +..+    |.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~----g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~  105 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALK-NLLE----NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDS  105 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGG-SCCT----TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCC-CCCC----CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHc
Confidence            47888999989999999998888876 3333    788888888888888888888888876 56688888888888888


Q ss_pred             CCHHHHHHHHhhccccccccCCCC-CCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREG-VTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~-~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      |+.+++++|++.|++ ++..+..| .|||+.    ++.+++++|+.. |++... ...|.||||+|+++.
T Consensus       106 g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~g~t~L~~A~~~g  172 (285)
T 3kea_A          106 GNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFD-LAILLSCIHITIKNG  172 (285)
T ss_dssp             TCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCC-CSTHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccc-ccCCccHHHHHHHcC
Confidence            888888888888888 88888888 688877    777777555554 333311 126677777766654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=1.9e-27  Score=155.49  Aligned_cols=143  Identities=20%  Similarity=0.123  Sum_probs=120.3

Q ss_pred             CHHHHHHH---HcCCHHHHHHHHHhChhhhhh--------hcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCC--
Q 048410            2 SHYVILAA---QAGNVDALYELIWEDAYLLDQ--------IDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN--   68 (151)
Q Consensus         2 ~~~l~~a~---~~g~~~~v~~ll~~~~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--   68 (151)
                      .||||.|+   +.|+.+++++|++.+.+....        ...+..|.||||+|+..|+.+++++|++.|+++ +..+  
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~  125 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARG  125 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEE
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Cccccc
Confidence            48999999   779999999999998763211        111114899999999999999999999999887 5556  


Q ss_pred             ------------CCCCcHHHHHHhcCCHHHHHHHHh---hccccccccCCCCCCcccc----cC---------HHHHHHH
Q 048410           69 ------------QYGFSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHY----GN---------VDLLYKF  120 (151)
Q Consensus        69 ------------~~~~t~L~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~t~l~~----~~---------~~~~~~l  120 (151)
                                  ..|.||||+|+..|+.+++++|++   .|++ ++.++..|.||||+    ++         .++++.|
T Consensus       126 ~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~L  204 (260)
T 3jxi_A          126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL  204 (260)
T ss_dssp             CCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             cccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHH
Confidence                        579999999999999999999999   8898 99999999999998    44         5788666


Q ss_pred             HHhCCCCc-------ccccccCCCccccccccCC
Q 048410          121 LAACPESI-------LQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       121 l~~~~~~~-------~~~~~~g~t~l~~a~~~~~  147 (151)
                      +. .|+++       +.++..|.||||+|++++.
T Consensus       205 l~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          205 LI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HH-hCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            55 57777       6789999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=3.1e-27  Score=154.21  Aligned_cols=140  Identities=20%  Similarity=0.221  Sum_probs=120.1

Q ss_pred             CHHHHHHHHcCCHH----HHHHHHHhChhhhh---hhcCCCCCCchHHHHHhc---CCHHHHHHHHHhCCCccc------
Q 048410            2 SHYVILAAQAGNVD----ALYELIWEDAYLLD---QIDRVPFVDTPLHIAASM---GHVNFALEIMRLKPSFAR------   65 (151)
Q Consensus         2 ~~~l~~a~~~g~~~----~v~~ll~~~~~~~~---~~~~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~------   65 (151)
                      .||||.|++.|+.+    +++++++.+.++..   ..+.  .|.||||+|+..   |+.+++++|++.+++...      
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~--~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS--TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT--TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC--CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            48999999999997    55677778887643   1343  499999999999   999999999998866521      


Q ss_pred             ----cCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCC-------------CCCcccc----cCHHHHHHHHHh-
Q 048410           66 ----KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-------------GVTPLHY----GNVDLLYKFLAA-  123 (151)
Q Consensus        66 ----~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-------------~~t~l~~----~~~~~~~~ll~~-  123 (151)
                          ..|..|.||||+|+..|+.+++++|++.|++ ++..+..             |.|||+.    ++.+++++|+.. 
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                1246799999999999999999999999999 8888876             9999998    999999777775 


Q ss_pred             -CCCCcccccccCCCccccccc
Q 048410          124 -CPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus       124 -~~~~~~~~~~~g~t~l~~a~~  144 (151)
                       .|++++.+|..|.||||+|++
T Consensus       160 ~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          160 HQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHH
T ss_pred             ccCCCcCccCCCCCCHHHHHHH
Confidence             799999999999999999997

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=2.8e-26  Score=151.17  Aligned_cols=138  Identities=19%  Similarity=0.129  Sum_probs=60.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.|.++ ...+.  .|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|
T Consensus        41 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  116 (285)
T 1wdy_A           41 TPLHNAVQMSREDIVELLLRHGADP-VLRKK--NGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTT
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCC-cccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhC
Confidence            3444444444444444444444333 11121  1444444444444444444444444433 233444444444444444


Q ss_pred             CHHHHHHHHhhcccccccc----------CCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQ----------GREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~----------~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      +.+++++|++.|++ ++..          +..|.|||+.    ++.+++++|+...|.+++..+..|.||+|.|+..
T Consensus       117 ~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  192 (285)
T 1wdy_A          117 KVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC
T ss_pred             CHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            44444444444444 3333          3334444444    4444444444444444444445555555544443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=5.1e-27  Score=154.52  Aligned_cols=143  Identities=16%  Similarity=0.139  Sum_probs=120.4

Q ss_pred             CHHHHHHHHc---CCHHHHHHHHHhChhhh------hh--hcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCC-
Q 048410            2 SHYVILAAQA---GNVDALYELIWEDAYLL------DQ--IDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQ-   69 (151)
Q Consensus         2 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~------~~--~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-   69 (151)
                      .||||.|+..   |+.+++++|++.|++..      +.  .+.+..|.||||+|+..|+.+++++|++.|+++ +..+. 
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~  133 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANG  133 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCS
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccccc
Confidence            4899999987   99999999999987631      11  111235899999999999999999999999887 55565 


Q ss_pred             -------------CCCcHHHHHHhcCCHHHHHHHHh---hccccccccCCCCCCcccc----cC---------HHHHHHH
Q 048410           70 -------------YGFSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHY----GN---------VDLLYKF  120 (151)
Q Consensus        70 -------------~~~t~L~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~t~l~~----~~---------~~~~~~l  120 (151)
                                   .|.||||+|+..|+.+++++|++   .|++ ++.++..|.||||+    ++         .++++.|
T Consensus       134 ~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~L  212 (273)
T 2pnn_A          134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI  212 (273)
T ss_dssp             GGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHH
Confidence                         79999999999999999999999   8898 99999999999998    45         6788666


Q ss_pred             HHhCCCCcc-------cccccCCCccccccccCC
Q 048410          121 LAACPESIL-------QVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       121 l~~~~~~~~-------~~~~~g~t~l~~a~~~~~  147 (151)
                      +. .|++++       .+|..|.||||+|+++..
T Consensus       213 l~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          213 LI-LGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HH-hhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            65 477775       479999999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=2.9e-26  Score=156.40  Aligned_cols=141  Identities=16%  Similarity=0.153  Sum_probs=117.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHh----Chhhhhh----------------hcCCCCCCchHHHHHhcC--CHHHHHHHHHhC
Q 048410            3 HYVILAAQAGNVDALYELIWE----DAYLLDQ----------------IDRVPFVDTPLHIAASMG--HVNFALEIMRLK   60 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~----~~~~~~~----------------~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~   60 (151)
                      ||||.|+..|+.+++++|++.    +..+...                .+.  .|.||||+|+..|  +.+++++|++.+
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~t~L~~A~~~g~~~~~~v~~Ll~~g  163 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC--KGQTALHWCVGLGPEYLEMIKILVQLG  163 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE--SCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC--CCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            567777777777777777776    4433210                332  3899999999999  999999999999


Q ss_pred             CCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhcccc----ccccCCCCCCcccc----cCHHHHHHHHHhCCCCccccc
Q 048410           61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL----VRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVT  132 (151)
Q Consensus        61 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~----~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~  132 (151)
                      +++ +..|..|.||||+|+..|+.+++++|++.|++.    ++..+..|.|||++    ++.+++++|+. .|++++.+|
T Consensus       164 a~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d  241 (364)
T 3ljn_A          164 ASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMED  241 (364)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCC
T ss_pred             CCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Confidence            887 677999999999999999999999999987763    67788899999998    99999966665 689999999


Q ss_pred             ccCCCccccccccCC
Q 048410          133 IYFPILLPFSSKFSP  147 (151)
Q Consensus       133 ~~g~t~l~~a~~~~~  147 (151)
                      ..|.||||+|+++..
T Consensus       242 ~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          242 NEHTVPLYLSVRAAM  256 (364)
T ss_dssp             TTSCCHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHhCh
Confidence            999999999998753

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=1.8e-26  Score=157.43  Aligned_cols=139  Identities=19%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccc-----------------
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR-----------------   65 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~-----------------   65 (151)
                      ||||.|+..|+.++|++|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.+++...                 
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~   98 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSP-TIQNR--FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTD   98 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT--TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCc-cccCC--CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHH
Confidence            6777777777777777777777665 33332  367777777777777777777776653311                 


Q ss_pred             -----------------c-----------------CCCCCCcHHHHHHhcC--CHHHHHHHHhhccccccccCCCCCCcc
Q 048410           66 -----------------K-----------------QNQYGFSPLHLALQNS--HTQMVLRLIDVDRNLVRVQGREGVTPL  109 (151)
Q Consensus        66 -----------------~-----------------~~~~~~t~L~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~l  109 (151)
                                       .                 .+..|.||||+|+..|  +.+++++|++.|++ ++..+..|.|||
T Consensus        99 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L  177 (364)
T 3ljn_A           99 LVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPL  177 (364)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHH
T ss_pred             HHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHH
Confidence                             1                 4556778888888887  77888888888777 777777888888


Q ss_pred             cc----cCHHHHHHHHHhCCCC-----cccccccCCCccccccccC
Q 048410          110 HY----GNVDLLYKFLAACPES-----ILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       110 ~~----~~~~~~~~ll~~~~~~-----~~~~~~~g~t~l~~a~~~~  146 (151)
                      ++    ++.+++++|+.. |++     ++..+..|.||||+|+++.
T Consensus       178 ~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          178 MRAMEFRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             HHHHHcCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcC
Confidence            77    777888666654 445     7777778888888877654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.8e-26  Score=160.63  Aligned_cols=138  Identities=25%  Similarity=0.327  Sum_probs=108.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.++++ +..+.  .|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|
T Consensus       247 t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g  322 (437)
T 1n11_A          247 TPLHLAAQEGHAEMVALLLSKQANG-NLGNK--SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYG  322 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT--TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSS
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcC
Confidence            6777777777777777777777665 33332  3778888888888888888888887776 566788888888888888


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      +.+++++|++.|++ ++.++..|.|||++    ++.+++++|+. .|++.+.++..|.||+++|.+++
T Consensus       323 ~~~~v~~Ll~~gad-~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          323 NIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             CSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             cHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHCChHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcC
Confidence            88888888888888 88888888888887    88888866555 57888888888888888887764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=2.8e-26  Score=151.12  Aligned_cols=141  Identities=19%  Similarity=0.116  Sum_probs=124.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +++|+.|++.|+.+++++|++.++++....+.  .|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHc
Confidence            47999999999999999999999887444343  4899999999999999999999999887 66789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccc----------cccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQV----------TIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~----------~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.|++ ++..+..|.|||+.    ++.+++++|+. .|++.+..          +..|.||||+|++..+
T Consensus        83 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T 1wdy_A           83 GSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             TCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence            999999999999999 89999999999998    99999966666 46777776          7789999999987653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=4.2e-27  Score=152.36  Aligned_cols=134  Identities=18%  Similarity=0.116  Sum_probs=93.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|||+.|++.|+.+.++.|+++|.++... .   .+.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~---~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRVKFN-P---LPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCcccC-c---hhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            48999999999999999999999887433 2   3789999999999999999999999876 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCC-Cccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFP-ILLPFS  142 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~-t~l~~a  142 (151)
                      |+.+++++|++.|++ ++.+|..|.||||+    ++.++++.|+. .|++++.++..|. ||+|+|
T Consensus        81 g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHC
T ss_pred             CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHH
Confidence            999999999999999 99999999999998    89999966665 5889999988877 999998

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=2.4e-26  Score=160.03  Aligned_cols=140  Identities=26%  Similarity=0.324  Sum_probs=108.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.++|++|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.+++. +..+..|.||||+|+..
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   90 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNV--KVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARI   90 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSS--CCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHC
Confidence            47888888888888888888888765 33332  3788888888888888888888888776 56678888888888888


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+.+++++|++.|++ ++..+..|.|||+.    ++.++++.|+.. +++.+..+..|.||||+|+++++
T Consensus        91 g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~  158 (437)
T 1n11_A           91 GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGK  158 (437)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCC
Confidence            888888888888888 77888888888887    777777666553 55666666777777777776543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=2e-26  Score=142.21  Aligned_cols=131  Identities=15%  Similarity=0.157  Sum_probs=111.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|.++ +..+.  .|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+..
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  112 (172)
T 3v30_A           37 FTPLIWASAFGEIETVRFLLEWGADP-HILAK--ERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRG  112 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT--TCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcc--cCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            47999999999999999999999886 44443  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPIL  138 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~  138 (151)
                      ++.+++++|++.|++ ++.++..|.||+++    ++.++++.|+. .+++...++..|.||
T Consensus       113 ~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          113 NHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-HILKLFQSNLVPADP  171 (172)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHHHSCC-------
T ss_pred             CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH-HHHHHhcccCCCCCC
Confidence            999999999999999 99999999999998    99999966665 466777777777776

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=8.9e-26  Score=134.44  Aligned_cols=116  Identities=27%  Similarity=0.369  Sum_probs=104.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|+||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.+++. +..|..|.||||+|+..
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADV-NAKDE--YGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence            47999999999999999999999886 44443  4899999999999999999999999887 67788999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA  122 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~  122 (151)
                      ++.+++++|++.|++ ++..+..|.||+++    ++.+++++|+.
T Consensus        91 ~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           91 GHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999 89999999999998    89999976665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.3e-26  Score=150.07  Aligned_cols=143  Identities=15%  Similarity=0.115  Sum_probs=122.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|+||.|+..|+.+++++|++.++++ +..+.  .|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           38 LALLLDSSLEGEFDLVQRIIYEVDDP-SLPND--EGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASC  113 (239)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT--TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            37999999999999999999999876 44453  4999999999999999999999999887 77899999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCC-Ccccc------cCHHHHHHHHHhCCCCcccc---------cccCCCcccccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGV-TPLHY------GNVDLLYKFLAACPESILQV---------TIYFPILLPFSSKF  145 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~-t~l~~------~~~~~~~~ll~~~~~~~~~~---------~~~g~t~l~~a~~~  145 (151)
                      |+.+++++|++.|++ ++..+..+. ||++.      ++.++++.|+.. |++.+..         +..+.++.+++.+.
T Consensus       114 ~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~  191 (239)
T 1ycs_B          114 NNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKE  191 (239)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCS
T ss_pred             CCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHh-hhcccccccceEEEEeccCCCCCCcccccC
Confidence            999999999999999 888888876 99987      778999666664 5666554         45578888888877


Q ss_pred             CCCcc
Q 048410          146 SPIFS  150 (151)
Q Consensus       146 ~~~~~  150 (151)
                      +++.+
T Consensus       192 G~~i~  196 (239)
T 1ycs_B          192 GDCMT  196 (239)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            76543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=8.4e-27  Score=153.38  Aligned_cols=139  Identities=22%  Similarity=0.210  Sum_probs=107.7

Q ss_pred             HHHHHHHHcCCHH-HHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            3 HYVILAAQAGNVD-ALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         3 ~~l~~a~~~g~~~-~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +||+.|+..++.+ +++.|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.++++ +..+..|.||+++|+..
T Consensus        54 t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~--~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~  129 (269)
T 4b93_B           54 HPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ--DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQ  129 (269)
T ss_dssp             ---------------------CCCCT-TCCCT--TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC--CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCcccccccc
Confidence            6889999887764 789999999887 55553  4999999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.+++++|++.|++ ++.++..|.|||++    ++.++++.|+. .|++++..+..|.||||+|++++.
T Consensus       130 ~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~  197 (269)
T 4b93_B          130 GHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKH  197 (269)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             ChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCC
Confidence            999999999999999 99999999999998    99999966665 689999999999999999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=2.3e-26  Score=157.50  Aligned_cols=108  Identities=20%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             CCchHHHHHhcC---CHHHHHHHHHhCCCccc-------cCCCCCCcHHHHHHhcCCHHHHHHHHhhc-cccccccCCCC
Q 048410           37 VDTPLHIAASMG---HVNFALEIMRLKPSFAR-------KQNQYGFSPLHLALQNSHTQMVLRLIDVD-RNLVRVQGREG  105 (151)
Q Consensus        37 ~~t~l~~a~~~~---~~~~~~~ll~~~~~~~~-------~~~~~~~t~L~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~  105 (151)
                      |.||||+|+..+   +.+++++|++.+.+...       ..+..|.||||+|+..|+.+++++|++.+ ++ ++..+..|
T Consensus       235 g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g  313 (373)
T 2fo1_E          235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDG  313 (373)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTC
T ss_pred             CCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCC
Confidence            556666655555   55566666666555421       13445666666666666666666666665 44 66666666


Q ss_pred             CCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410          106 VTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus       106 ~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      .|||++    ++.+++++|+. .|++++.+|..|.||+|+|+++.
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcC
Confidence            777666    66666644444 46666666666777777666654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=7.1e-26  Score=145.97  Aligned_cols=140  Identities=19%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ++|+.|+..|+.+++++|++.|.++ ...+.  .|.||||+|+..|+.+++++|++.++......+..|.||||+|+..+
T Consensus        11 ~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~   87 (240)
T 3eu9_A           11 WDIVKATQYGIYERCRELVEAGYDV-RQPDK--ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG   87 (240)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred             hHHHHHHHcCChHHHHHHHHcCCCc-CCCCC--CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence            5688888888888888888888765 33332  37888888888888888888888887775555556888888888888


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+++++|++.|++ ++..+..|.|||+.    ++.+++++|+. .|++++..+..|.||+|.|+....
T Consensus        88 ~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           88 HLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHh-cCCCccccCCCCCcHHHHHHHhCC
Confidence            88888888888887 77788888888887    77888866655 467788888888888888875443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=6.5e-27  Score=155.07  Aligned_cols=138  Identities=14%  Similarity=0.061  Sum_probs=121.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCC-CcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYG-FSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~t~L~~a~~   80 (151)
                      .||||.|+..|+.+++++|++.|+++ +..+.  .|.||||+|+..|+.+++++|++.|+++ +..+..| .||||+|+.
T Consensus        63 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~  138 (285)
T 3kea_A           63 EFPLHQAATLEDTKIVKILLFSGLDD-SQFDD--KGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVM  138 (285)
T ss_dssp             CCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC--CCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHH
Confidence            47999999999999999999999986 44443  4899999999999999999999999887 6778888 799999999


Q ss_pred             cCCHHHHHHHHhhccccccccCC-CCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCc-cccccccCC
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPIL-LPFSSKFSP  147 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~-l~~a~~~~~  147 (151)
                      .|+.+++++|++.|+. .  .+. .|.|||+.    ++.+++++|+.. |++++.++..|.|| ||+|+++..
T Consensus       139 ~~~~~~v~~Ll~~g~~-~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          139 LNDVSIVSYFLSEIPS-T--FDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             TTCHHHHHHHHTTSCT-T--CCCSTHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred             cCCHHHHHHHHhCCCc-c--ccccCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCC
Confidence            9999999999999887 3  233 88999998    999999777765 88999999999998 999987653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=2.7e-26  Score=136.72  Aligned_cols=116  Identities=19%  Similarity=0.216  Sum_probs=104.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCC-CCcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQY-GFSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~t~L~~a~~   80 (151)
                      .||||.|++.|+.+++++|++.+.++ +..+.  .|.||||+|+. ++.+++++|++.++++ +..+.. |.||||+|+.
T Consensus        13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           13 DAGLATAAARGQVETVRQLLEAGADP-NALNR--FGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAAR   87 (136)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCC--CCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHHH
Confidence            58999999999999999999999876 44443  48999999999 9999999999999887 677888 9999999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      .++.+++++|++.|++ ++.++..|.|||++    ++.+++++|+..
T Consensus        88 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999 99999999999998    899999777764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=1.2e-25  Score=152.00  Aligned_cols=137  Identities=23%  Similarity=0.205  Sum_probs=88.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc-----------------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA-----------------   64 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-----------------   64 (151)
                      +|+|+.|++.|+.++|++|++.|++++...+.  .|.||||+|+..|+.+++++|++.|+++.                 
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~--~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC--CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            47899999999999999999999887433222  37899999999999999999988876531                 


Q ss_pred             ---------------ccCCCCCCcHHHHHHhcCCHHHHHHHHhhcccccccc----------CCCCCCcccc----cCHH
Q 048410           65 ---------------RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQ----------GREGVTPLHY----GNVD  115 (151)
Q Consensus        65 ---------------~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~----------~~~~~t~l~~----~~~~  115 (151)
                                     +..|..|.||+++|+..|+.++++++++.|++ ++..          +..|.|||+.    ++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                           22345556666666666666666666655554 3322          2235555555    5555


Q ss_pred             HHHHHHHhCCCCcccccccCCCcccc
Q 048410          116 LLYKFLAACPESILQVTIYFPILLPF  141 (151)
Q Consensus       116 ~~~~ll~~~~~~~~~~~~~g~t~l~~  141 (151)
                      +++.||...|++++.++..|.|+++.
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~  208 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIH  208 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHH
Confidence            55555554555555555555555544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=1.1e-25  Score=152.30  Aligned_cols=91  Identities=23%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  134 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLLQHGADV-HAKDK--GGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASK  134 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC--CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence            46888888888888888888887765 44442  3778888888888888888888887776 55677788888888888


Q ss_pred             CCHHHHHHHHhhccc
Q 048410           82 SHTQMVLRLIDVDRN   96 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~   96 (151)
                      |+.+++++|++.|++
T Consensus       135 ~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A          135 NRVEVCSLLLSHGAD  149 (351)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            877777777776655

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=5.2e-25  Score=134.98  Aligned_cols=116  Identities=24%  Similarity=0.297  Sum_probs=105.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.+.++ +..|..|.||||+|+..
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  118 (165)
T 3twr_A           43 STPLHFAAGYNRVSVVEYLLQHGADV-HAKDK--GGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAK  118 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCC-CccCC--CCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHc
Confidence            38999999999999999999999886 44443  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc---cCHHHHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY---GNVDLLYKFLA  122 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~---~~~~~~~~ll~  122 (151)
                      ++.+++++|++.|++ ++.++..|.||+++   ++.+++++|+.
T Consensus       119 ~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~~~~~i~~~L~~  161 (165)
T 3twr_A          119 GKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTDIQDLLRG  161 (165)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCC-CcccCCCCCChhHhHhcCChHHHHHHhh
Confidence            999999999999999 99999999999998   88899955554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=1.7e-26  Score=150.98  Aligned_cols=144  Identities=17%  Similarity=0.112  Sum_probs=118.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHH----hChhhhhhhc-CCCCCCchHHHHH---hcCCHHHHHHHHHhCCCc----------c
Q 048410            3 HYVILAAQAGNVDALYELIW----EDAYLLDQID-RVPFVDTPLHIAA---SMGHVNFALEIMRLKPSF----------A   64 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~----~~~~~~~~~~-~~~~~~t~l~~a~---~~~~~~~~~~ll~~~~~~----------~   64 (151)
                      ++||.|++.|+.+.++.|++    .+..+..... ....|.||||+|+   ..|+.+++++|++.+.+.          .
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   86 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF   86 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence            78999999999996655555    7777643321 1124999999999   679999999999987432          1


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccC--------------CCCCCcccc----cCHHHHHHHHHh--C
Q 048410           65 RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQG--------------REGVTPLHY----GNVDLLYKFLAA--C  124 (151)
Q Consensus        65 ~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~t~l~~----~~~~~~~~ll~~--~  124 (151)
                      ...|..|.||||+|+..|+.+++++|++.|++ ++..+              ..|.||||.    ++.+++++|+..  .
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  165 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK  165 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            33455899999999999999999999999999 88888              689999998    999999777774  7


Q ss_pred             CCCcccccccCCCccccccccCC
Q 048410          125 PESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       125 ~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |++++.+|..|.||||+|+++.+
T Consensus       166 ga~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          166 QADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CCCCcccCCCCCcHHHHHHHhcc
Confidence            89999999999999999996543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=9.9e-25  Score=140.78  Aligned_cols=141  Identities=18%  Similarity=0.142  Sum_probs=118.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhh-----hhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCC-CCCcHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYL-----LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQ-YGFSPL   75 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~-----~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~t~L   75 (151)
                      .||||.|+..|+.+++++|++.++..     ....+  ..|.||||+|+..|+.+++++|++.|+++ +..+. .|.|||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL  155 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN--YNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTAL  155 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC--TTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHH
Confidence            47999999999999999999998642     23333  24899999999999999999999999988 55565 899999


Q ss_pred             HHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcc--cccccCCCccccccccCC
Q 048410           76 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESIL--QVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        76 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~--~~~~~g~t~l~~a~~~~~  147 (151)
                      |+|+..|+.+++++|++.|++ ++.++..|.||+++    ++.+++++|+. .|++..  ..+..|.|+.+.+.....
T Consensus       156 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          156 HLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC-----
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhhccccc
Confidence            999999999999999999999 99999999999998    89999966665 566555  567889999988776543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=149.94  Aligned_cols=134  Identities=13%  Similarity=0.073  Sum_probs=112.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhh-----hcCCCCCCchHHHHHhc---CCHHHHHHHHHhCCCccccCCCCCCcH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQ-----IDRVPFVDTPLHIAASM---GHVNFALEIMRLKPSFARKQNQYGFSP   74 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~-----~~~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~   74 (151)
                      ++|+.|++.|+.+.++.+++.++++...     .+  ..|.||||+|+..   ++.+++++|++.|+++ +..|..|.||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp  229 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ--APEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA  229 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSC--SCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccC--CCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence            5799999999999999999999887442     23  2489999999997   8999999999999887 6779999999


Q ss_pred             HHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           75 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        75 L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ||+|+..|+.+++++|++.|++ ++.+|..|.|||++    ++.+++++|+.. |++      .|.||||+|++++-
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHhcCC
Confidence            9999999999999999999999 99999999999998    999999777664 332      68999999998753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=8e-25  Score=135.86  Aligned_cols=127  Identities=23%  Similarity=0.260  Sum_probs=111.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|.++ +..+.  .|.||||+|+..++.+++++|++.+++. +..|..|.||||+|+..
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~  115 (179)
T 3f6q_A           40 FSPLHWACREGRSAVVEMLIMRGARI-NVMNR--GDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFW  115 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            47999999999999999999999886 44443  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCccccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIY  134 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~  134 (151)
                      ++.+++++|++.|++ ++..+..|.||+++    ++.+++ .+|...|++.+..+..
T Consensus       116 ~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~-~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          116 GQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLR-ERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             TCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHH-HHHHHTTCCCSCBCCC
T ss_pred             CCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHH-HHHHHhhcCcccCCcc
Confidence            999999999999999 99999999999998    667777 5555567888765543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=144.67  Aligned_cols=105  Identities=28%  Similarity=0.363  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.|+..|+.+++++|++.++......+.  .|.|||++|+..++.+++++|++.+.+. +..+..|.||||+|+..+
T Consensus        44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~  120 (240)
T 3eu9_A           44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGD--LNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFG  120 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT--TTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCCcchhhcCC--cCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcC
Confidence            5777777777777777777777765433332  2667777777777777777777776665 455667777777777777


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      +.+++++|++.|++ ++..+..|.||++.
T Consensus       121 ~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~  148 (240)
T 3eu9_A          121 HTSIVAYLIAKGQD-VDMMDQNGMTPLMW  148 (240)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             HHHHHHHHHhcCCC-ccccCCCCCcHHHH
Confidence            77777777777666 55555555555544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=6.3e-25  Score=128.60  Aligned_cols=111  Identities=18%  Similarity=0.269  Sum_probs=92.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +++||.|+..|+.+++++|++.++++ +..+.  .|.||||+|+..++.+++++|++.++++ +..|..|.||||+|+..
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE--GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCT--TSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCc-CccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence            47889999999999999999888875 44443  3889999999999999999999888876 66788889999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc-cCHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY-GNVDLL  117 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~-~~~~~~  117 (151)
                      ++.+++++|++.|++ ++.++..|.||+++ ...++.
T Consensus        84 ~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~  119 (123)
T 3aaa_C           84 GHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIK  119 (123)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHHH
Confidence            999999999988888 88888889999888 555544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.2e-24  Score=127.59  Aligned_cols=117  Identities=29%  Similarity=0.484  Sum_probs=106.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|++.|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+..
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDK--NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC--CCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            58999999999999999999999876 44443  4899999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      ++.+++++|++.|++ ++.++..|.||+++    ++.+++++|+..
T Consensus        79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            999999999999999 89999999999998    899999777765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=3e-25  Score=152.02  Aligned_cols=141  Identities=14%  Similarity=0.138  Sum_probs=125.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhC---CCccccCCCCCCcHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK---PSFARKQNQYGFSPLHLA   78 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~t~L~~a   78 (151)
                      .||||.|+..|+.++|++|++.|+++ ...+.  .|.||||+|+..|+.+++++|++.+   .+. +..+..|.||||+|
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGADP-TIYNK--SERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIV  242 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT--TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCCC-cccCC--CCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHH
Confidence            58999999999999999999999987 44443  4899999999999999999999977   454 66789999999999


Q ss_pred             HhcC---CHHHHHHHHhhccccccc--------cCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccc
Q 048410           79 LQNS---HTQMVLRLIDVDRNLVRV--------QGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSS  143 (151)
Q Consensus        79 ~~~~---~~~~~~~ll~~~~~~~~~--------~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  143 (151)
                      +..+   +.+++++|++.|++ ++.        .+..|.|||+.    ++.+++++|+...+++++.+|..|.||||+|+
T Consensus       243 ~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~  321 (373)
T 2fo1_E          243 AHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA  321 (373)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence            9988   89999999999988 665        56789999998    99999999998888999999999999999999


Q ss_pred             ccCC
Q 048410          144 KFSP  147 (151)
Q Consensus       144 ~~~~  147 (151)
                      ++..
T Consensus       322 ~~g~  325 (373)
T 2fo1_E          322 QEGR  325 (373)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            7653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=1e-24  Score=132.16  Aligned_cols=114  Identities=27%  Similarity=0.340  Sum_probs=103.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|.++ +..+.  .|.||||+|+..++.+++++|++.++++ +..+..|.||||+|+..
T Consensus        35 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  110 (153)
T 1awc_B           35 TSPLHLAAQYGHFSTTEVLLRAGVSR-DARTK--VDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCT--TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            48999999999999999999999886 44443  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKF  120 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~l  120 (151)
                      ++.+++++|++.|++ ++.++..|.||+++    ++.+++++|
T Consensus       111 ~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          111 NHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999 99999999999998    889988554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.92  E-value=1.3e-24  Score=147.04  Aligned_cols=138  Identities=21%  Similarity=0.212  Sum_probs=122.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++|+.|++.|+.+.|+.++.......+..+.  .|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  101 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDG--RKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSY  101 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSST--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHC
Confidence            37899999999999999999875443345553  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      |+.+++++|++.|++ ++..+..|.|||++    ++.+++++|+. .|++.+..+..|.+|++.++.
T Consensus       102 g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~~~l~~a~~  166 (351)
T 3utm_A          102 GHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPT  166 (351)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCSS
T ss_pred             CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCcchHHHhh
Confidence            999999999999999 99999999999998    99999966665 588999999999999998764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=3e-24  Score=132.16  Aligned_cols=116  Identities=27%  Similarity=0.346  Sum_probs=105.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|.++ +..+.  .|.||||+|+..++.+++++|++.+++. +..+..|.||||+|+..
T Consensus        48 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  123 (169)
T 2y1l_E           48 WTPLHLAAFNGHLEIVEVLLKNGADV-NAVDH--AGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMF  123 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            47999999999999999999999876 44443  4899999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA  122 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~  122 (151)
                      ++.+++++|++.|++ ++.++..|.||+++    ++.+++++|++
T Consensus       124 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          124 GHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999 99999999999998    89999966664

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=1.4e-24  Score=132.61  Aligned_cols=119  Identities=21%  Similarity=0.241  Sum_probs=105.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+. |+.+++++|++.|.++ +..+.  .|.||||+|+..++.+++++|++.+.++ +..+..|.||||+|+..
T Consensus        39 ~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  113 (162)
T 1ihb_A           39 RTALQVMKL-GNPEIARRLLLRGANP-DLKDR--TGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKE  113 (162)
T ss_dssp             CCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             ccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            479999999 9999999999999886 44443  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPE  126 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~  126 (151)
                      |+.+++++|++.|+..++..+..|.||+++    ++.+++++|+.. |+
T Consensus       114 ~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-GA  161 (162)
T 1ihb_A          114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN-GA  161 (162)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-C-
T ss_pred             CCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh-CC
Confidence            999999999999998568999999999998    899999666654 54

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=7.6e-25  Score=130.48  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=77.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+..
T Consensus        11 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   86 (137)
T 3c5r_A           11 ETLLHIASIKGDIPSVEYLLQNGSDP-NVKDH--AGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKN   86 (137)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHHc
Confidence            46777777777777777777777665 33332  3777777777777777777777777665 55677777777777777


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      ++.+++++|++.|++ ++.+|..|.||+++
T Consensus        87 ~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~  115 (137)
T 3c5r_A           87 GHVDIVKLLLSYGAS-RNAVNIFGLRPVDY  115 (137)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCGGGG
T ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            777777777777777 77777777777777

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=1.9e-24  Score=135.51  Aligned_cols=117  Identities=17%  Similarity=0.264  Sum_probs=107.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.++++ +..+.  .|.||||+|+..++.+++++|++.++++ +..+..|.||||+|+..
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  144 (192)
T 2rfm_A           69 STALIWAVKNNRLGIAEKLLSKGSNV-NTKDF--SGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKY  144 (192)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC--CCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence            47999999999999999999999886 44443  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      ++.+++++|++.|++ ++.++..|.||+++    ++.+++++|+..
T Consensus       145 ~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          145 GRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             TCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            999999999999999 99999999999998    999999888764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=1.5e-24  Score=142.71  Aligned_cols=136  Identities=16%  Similarity=0.193  Sum_probs=106.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcC------------CCCCCchHHHHHhcCCHHHHHHHHH---hCCCcccc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDR------------VPFVDTPLHIAASMGHVNFALEIMR---LKPSFARK   66 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~------------~~~~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~   66 (151)
                      .||||.|+..|+.+++++|++.|+++ +..+.            ...|.||||+|+..|+.+++++|++   .+.++ +.
T Consensus       102 ~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~  179 (273)
T 2pnn_A          102 QTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SA  179 (273)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-ee
Confidence            48999999999999999999999887 33332            0138999999999999999999999   78877 67


Q ss_pred             CCCCCCcHHHHHHhcCC---------HHHHHHHHhhcccccc-------ccCCCCCCcccc----cCHHHHHHHHHhCCC
Q 048410           67 QNQYGFSPLHLALQNSH---------TQMVLRLIDVDRNLVR-------VQGREGVTPLHY----GNVDLLYKFLAACPE  126 (151)
Q Consensus        67 ~~~~~~t~L~~a~~~~~---------~~~~~~ll~~~~~~~~-------~~~~~~~t~l~~----~~~~~~~~ll~~~~~  126 (151)
                      .|..|.||||+|+..++         .+++++|++.|++ ++       .++..|.|||++    ++.+++++|+.....
T Consensus       180 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK-LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh-cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence            89999999999999888         7999999999998 75       589999999998    999999888876544


Q ss_pred             CcccccccCCCccc
Q 048410          127 SILQVTIYFPILLP  140 (151)
Q Consensus       127 ~~~~~~~~g~t~l~  140 (151)
                      +.......+.+|.+
T Consensus       259 dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          259 EPECRHAAAHHHHH  272 (273)
T ss_dssp             --------------
T ss_pred             CchhhhhhhhhccC
Confidence            66666566665543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=5.6e-24  Score=130.59  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=106.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.++++ +..+..|.||||+|+..
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           37 FTPLMWAAAHGQIAVVEFLLQNGADP-QLLGK--GRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCC--CCCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHc
Confidence            47999999999999999999999876 44443  4899999999999999999999999888 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      ++.+++++|++.|++ ++..+..|.||+++    ++.+++++|+..
T Consensus       113 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          113 NHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999 89999999999998    999999777764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=2.5e-24  Score=145.45  Aligned_cols=144  Identities=23%  Similarity=0.154  Sum_probs=120.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhc-------CCCCCCchHHHHHhcCCHHHHHHHHHh-CCCccccCCCCCCc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQID-------RVPFVDTPLHIAASMGHVNFALEIMRL-KPSFARKQNQYGFS   73 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-------~~~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t   73 (151)
                      .||++.|+..|+.++++++++.|+++.....       ....|.||||+|+..|+.+++++|+++ |.++ +..+..|.+
T Consensus       126 ~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t  204 (337)
T 4g8k_A          126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRN  204 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCc
Confidence            4799999999999999999999887532111       112478999999999999999999976 5665 777889999


Q ss_pred             HHHHHHhcCC----HHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           74 PLHLALQNSH----TQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        74 ~L~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ++++++..+.    ..++++|++.|++ ++.++..|.||||.    ++.++++.|+...|++++.+|..|.||||+|+++
T Consensus       205 ~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          205 ALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             HHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence            9998776543    3578899999999 89999999999998    8899998888888999999999999999999987


Q ss_pred             CC
Q 048410          146 SP  147 (151)
Q Consensus       146 ~~  147 (151)
                      +.
T Consensus       284 g~  285 (337)
T 4g8k_A          284 KL  285 (337)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=9.3e-25  Score=139.80  Aligned_cols=128  Identities=19%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHh-CCCccccCCCCCCcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL-KPSFARKQNQYGFSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~L~~a~~   80 (151)
                      .|+||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..|+.+++++|++. +.+. +..|..|.||||+|+.
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVGV-NGLDK--AGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW  149 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccccccCcHHHHHHHHhCCCCc-cccCC--CCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence            57999999999999999999999886 44443  499999999999999999999998 6666 7789999999999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccC
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYF  135 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g  135 (151)
                      .|+.+++++|++.|++ ++.++..|.||+++    +..++++.++ ..++.....+..+
T Consensus       150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~-~~~~~~~~~~~~~  206 (222)
T 3ehr_A          150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQ-GTDAVRTLSNAED  206 (222)
T ss_dssp             HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHh-ccchhhhccchhh
Confidence            9999999999999999 99999999999998    6777775444 4566666655443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=6.6e-24  Score=144.79  Aligned_cols=141  Identities=17%  Similarity=0.135  Sum_probs=107.6

Q ss_pred             HHHHHHHHc-CCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            3 HYVILAAQA-GNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         3 ~~l~~a~~~-g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      ++||.|+.. |+.++++.|++.|.++. ..+....|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            689999999 99999999999999874 3432234899999999999999999999999888 67899999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCC--CCcccccccCCCccccccccC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACP--ESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~--~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      |+.+++++|++.|++ ++..|..|.|||++    ++.+++++|+....  .+....+..+.|+++++..+.
T Consensus       279 g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          279 GHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             CcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999 99999999999998    99999987776532  233344567889998877664

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=6.5e-24  Score=126.43  Aligned_cols=107  Identities=24%  Similarity=0.310  Sum_probs=99.1

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----  111 (151)
                      .|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++ ++..+..|.|||++    
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   86 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKN   86 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHHHc
Confidence            4899999999999999999999999887 67799999999999999999999999999999 99999999999998    


Q ss_pred             cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410          112 GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ++.+++++|+. .|++++.+|..|.||+++|+..
T Consensus        87 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           87 GHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCH
T ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhc
Confidence            99999977665 5899999999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=4.6e-23  Score=136.14  Aligned_cols=133  Identities=15%  Similarity=0.155  Sum_probs=113.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhh---cCCCCCCchHHHHHhc---CCHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQI---DRVPFVDTPLHIAASM---GHVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~---~~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      ++|+.|+..|+.+.++.+++.|.++....   .....|.||||+|+..   ++.+++++|++.|+++ +.+|..|.||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence            57899999999999999999998864332   1113489999999999   8999999999999987 677999999999


Q ss_pred             HHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           77 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        77 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      +|+..|+.+++++|++.|++ ++.+|..|.|||++    ++.++++.|+....         +.+++|.++.|.
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga---------~~~~~~~~v~~~  274 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS---------GRFNSHVHVEYE  274 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT---------TCCCSSCCCCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC---------CCCCcceeeecc
Confidence            99999999999999999999 99999999999998    89999977776532         356667766654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=1.6e-23  Score=127.18  Aligned_cols=114  Identities=24%  Similarity=0.303  Sum_probs=103.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||. +..|+.+++++|++.|.++ +..+.  .|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus        37 ~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  111 (156)
T 1bd8_A           37 KTALQV-MMFGSTAIALELLKQGASP-NVQDT--SGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             CCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred             CcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCC--CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHh
Confidence            489999 9999999999999999886 44443  4999999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA  122 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~  122 (151)
                      |+.+++++|++. ++ ++..+..|.||+++    ++.++++.|+.
T Consensus       112 ~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          112 GHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999998 77 89999999999998    99999977765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=6.9e-24  Score=136.52  Aligned_cols=126  Identities=17%  Similarity=0.111  Sum_probs=101.6

Q ss_pred             HHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccc
Q 048410           17 LYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        17 v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~   96 (151)
                      ++.|++.+..+.........+.|+|++|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            46788888876433333234778999999999999999999999887 67899999999999999999999999999999


Q ss_pred             cccccCCCCCCcccc----cCHHHHHHHHHhCCCCccccc-ccCCCccccc--ccc
Q 048410           97 LVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVT-IYFPILLPFS--SKF  145 (151)
Q Consensus        97 ~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a--~~~  145 (151)
                       ++..+..|.|||++    ++.+++++|+. .|++++..+ ..|.||||+|  +..
T Consensus        80 -~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~a~~~  133 (229)
T 2vge_A           80 -VNSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSDGATAFEKCDPYRE  133 (229)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCSSTTCCTGGGCCTTST
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHHhc
Confidence             99999999999998    99999966665 688999886 6999999998  554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=2.2e-24  Score=142.34  Aligned_cols=141  Identities=18%  Similarity=0.176  Sum_probs=121.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhh-hhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHH--
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYL-LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLAL--   79 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~--   79 (151)
                      +++|.|+..|+.+.++.+++.+.+. ++..+.  .|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+  
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~--~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADS--NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            4567888889999999999887763 244443  49999999999999999999999998444788999999999999  


Q ss_pred             ---hcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           80 ---QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        80 ---~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                         ..++.+++++|++.|.. ....+..|.|||+.    ++.++++.|+. .|++++.+|..|.||||+|++++.
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCC
Confidence               56889999999999988 88888999999998    99999966665 589999999999999999988653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.6e-23  Score=122.55  Aligned_cols=105  Identities=14%  Similarity=0.125  Sum_probs=97.5

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----c
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G  112 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~  112 (151)
                      |.|+|++|+..|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++ ++.++..|.|||++    +
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence            789999999999999999999999887 67799999999999999999999999999999 99999999999998    9


Q ss_pred             CHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410          113 NVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus       113 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      +.++++.|+. .|++++.++..|.||+|+|..
T Consensus        85 ~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           85 HVSCVKLLLS-KGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHCCC
T ss_pred             CHHHHHHHHH-cCCCCCCcCCCCCCHHHHhCC
Confidence            9999976666 588999999999999999854

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=3.6e-23  Score=128.88  Aligned_cols=104  Identities=21%  Similarity=0.305  Sum_probs=89.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCC-CCCCcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN-QYGFSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a~~   80 (151)
                      .||||.|++.|+.++++.|++ +.++ +..+.  .|.||||+|+..|+.+++++|++.++++ +..+ ..|.||||+|+.
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~--~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDV-DAVDE--NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence            478999999999999999998 6665 44443  4899999999999999999999998887 4445 889999999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      .|+.+++++|++.|++ ++.++..|.||+++
T Consensus       120 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~  149 (183)
T 3deo_A          120 YVRPEVVEALVELGAD-IEVEDERGLTALEL  149 (183)
T ss_dssp             TTCHHHHHHHHHHTCC-TTCCCTTSCCHHHH
T ss_pred             cCcHHHHHHHHHcCCC-CcCCCCCCCCHHHH
Confidence            9999999999999988 88999999999886

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.6e-23  Score=124.70  Aligned_cols=108  Identities=21%  Similarity=0.280  Sum_probs=99.9

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----c
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G  112 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~  112 (151)
                      +.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.+++++|++.|++ ++..+..|.|||+.    +
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence            689999999999999999999999887 67789999999999999999999999999999 99999999999998    9


Q ss_pred             CHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          113 NVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       113 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+++++|+. .|++++.+|..|.||+|+|+++.+
T Consensus        92 ~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~  125 (136)
T 2jab_A           92 HLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGN  125 (136)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCC
Confidence            9999976666 588999999999999999998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=5.3e-24  Score=126.74  Aligned_cols=108  Identities=15%  Similarity=0.174  Sum_probs=99.3

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCC-CCCcccc---
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-GVTPLHY---  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~t~l~~---  111 (151)
                      .|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+. ++.+++++|++.|++ ++.++.. |.|||++   
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHHHHHHH
Confidence            4899999999999999999999999887 6778999999999999 999999999999999 9999999 9999998   


Q ss_pred             -cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          112 -GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       112 -~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                       ++.+++++|+. .|++++.++..|.||+|+|+++..
T Consensus        88 ~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~  123 (136)
T 1d9s_A           88 EGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGH  123 (136)
T ss_dssp             HTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCC
Confidence             99999966665 688999999999999999997653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.3e-22  Score=113.15  Aligned_cols=91  Identities=27%  Similarity=0.413  Sum_probs=79.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+..|+.+++++|++.|.++ +.++.  .|.||||+|+..++.+++++|++.++++ +.+|..|.||||+|+..
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~--~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDK--NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            47999999999999999999999876 44453  4899999999999999999999998887 67788999999999999


Q ss_pred             CCHHHHHHHHhhccc
Q 048410           82 SHTQMVLRLIDVDRN   96 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~   96 (151)
                      |+.+++++|++.|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999988763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1e-22  Score=132.19  Aligned_cols=104  Identities=21%  Similarity=0.305  Sum_probs=93.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCC-CCCCcHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN-QYGFSPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a~~   80 (151)
                      .||||.|++.|+.++++.|++ +.++ +..+.  .|.||||+|+..|+.+++++|++.++++ +..+ ..|.||||+|+.
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE-DRDV-DAVDE--NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCT--TSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCC--CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHH
Confidence            489999999999999999999 7665 44553  4999999999999999999999999988 4445 889999999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      .|+.+++++|++.|++ ++.++..|.|||++
T Consensus       121 ~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~  150 (244)
T 3ui2_A          121 YVRPEVVEALVELGAD-IEVEDERGLTALEL  150 (244)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCcHHHH
Confidence            9999999999999999 99999999999886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.6e-22  Score=118.38  Aligned_cols=108  Identities=25%  Similarity=0.417  Sum_probs=99.5

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----c
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G  112 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~  112 (151)
                      |.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++ ++..+..|.|||+.    +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcC
Confidence            889999999999999999999999887 66788999999999999999999999999999 89999999999998    8


Q ss_pred             CHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          113 NVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       113 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+++++|+. .|++++.++..|.||+++|+++..
T Consensus        80 ~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~  113 (126)
T 1n0r_A           80 HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGH  113 (126)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCc
Confidence            9999976666 588999999999999999998654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.3e-23  Score=131.24  Aligned_cols=116  Identities=9%  Similarity=-0.025  Sum_probs=100.4

Q ss_pred             CHHHHHHHHcCCH----HHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCC------HHHHHHHHHhCCCccccCCCCC
Q 048410            2 SHYVILAAQAGNV----DALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGH------VNFALEIMRLKPSFARKQNQYG   71 (151)
Q Consensus         2 ~~~l~~a~~~g~~----~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~   71 (151)
                      .||||.|+..|+.    +++++|++.|+++ +.++.  .|.||||+|+..++      .+++++|++.|+++ +.+|..|
T Consensus        39 ~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~--~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g  114 (186)
T 3t8k_A           39 SNILYDVLRNNNDEARYKISMFLINKGADI-KSRTK--EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPY  114 (186)
T ss_dssp             TTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCT--TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGG
T ss_pred             CCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCC--CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCc
Confidence            4899999999985    4899999999987 55553  49999999999986      57899999999998 7789999


Q ss_pred             C-cHHHHHHhcC-----CHHHHHHHHh-hccccccccCCCCCCcccc----cCHHHHHHHHH
Q 048410           72 F-SPLHLALQNS-----HTQMVLRLID-VDRNLVRVQGREGVTPLHY----GNVDLLYKFLA  122 (151)
Q Consensus        72 ~-t~L~~a~~~~-----~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~  122 (151)
                      . ||||+|+..+     +.+++++|++ .|++ ++.+|..|.|||++    ++.++++.|+.
T Consensus       115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             CchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9 9999999854     3568999999 8999 99999999999998    88888865554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=7.7e-23  Score=124.34  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=98.6

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCC-cccc---
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT-PLHY---  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t-~l~~---  111 (151)
                      .|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+ .|+.+++++|++.|++ ++.++..|.| |||+   
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHH
Confidence            3899999999999999999999998887 677899999999985 8999999999999999 9999999999 9998   


Q ss_pred             -cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          112 -GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       112 -~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                       ++.+++++|+.. |++++.++..|.||||+|+++..
T Consensus        88 ~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~  123 (156)
T 1bi7_B           88 EGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGH  123 (156)
T ss_dssp             HTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCH
Confidence             999999777765 88999999999999999987653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.2e-22  Score=126.58  Aligned_cols=105  Identities=14%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccC-CCCCCcccc----
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHY----  111 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~----  111 (151)
                      |.||||+|+..|+.++++.|++ +.++ +..|..|.||||+|+..|+.+++++|++.|++ ++..+ ..|.||||+    
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHhc
Confidence            7899999999999999999999 7766 67899999999999999999999999999999 88888 889999998    


Q ss_pred             cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410          112 GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ++.++++.|+.. |++++.+|..|.||+|+|+++
T Consensus       121 ~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          121 VRPEVVEALVEL-GADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             TCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             CcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHh
Confidence            999999777765 789999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=1.9e-22  Score=116.68  Aligned_cols=99  Identities=25%  Similarity=0.349  Sum_probs=51.2

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----c
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G  112 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~  112 (151)
                      |.||||+|+..++.+++++|++.+.+. +..|..|.||||+|+..++.+++++|++.|++ ++.++..|.|||++    +
T Consensus         9 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~~~~   86 (115)
T 2l6b_A            9 GNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNG   86 (115)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHHTTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHCC
Confidence            555555555555555555555555444 34455555555555555555555555555555 55555555555554    4


Q ss_pred             CHHHHHHHHHhCCCCcccccccCCCc
Q 048410          113 NVDLLYKFLAACPESILQVTIYFPIL  138 (151)
Q Consensus       113 ~~~~~~~ll~~~~~~~~~~~~~g~t~  138 (151)
                      +.+++++|+ ..|++++.++..|.+|
T Consensus        87 ~~~~~~~Ll-~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           87 HHEIVKLLD-AKGADVNARSWGSSHH  111 (115)
T ss_dssp             CHHHHHHHH-TTSSSHHHHSCCCC--
T ss_pred             CHHHHHHHH-HcCCCCCcCCcccccc
Confidence            555553333 3355555555555544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=3.6e-22  Score=127.74  Aligned_cols=106  Identities=23%  Similarity=0.291  Sum_probs=98.5

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhh-ccccccccCCCCCCcccc----
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHY----  111 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~----  111 (151)
                      |.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++. |++ ++.++..|.|||++    
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHHHc
Confidence            789999999999999999999999887 67799999999999999999999999998 788 99999999999998    


Q ss_pred             cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410          112 GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ++.++++.|+.. |++++.++..|.||+++|+..
T Consensus       151 ~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~  183 (222)
T 3ehr_A          151 GYADIVQLLLAK-GARTDLRNIEKKLAFDMATNA  183 (222)
T ss_dssp             TCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSH
T ss_pred             CCHHHHHHHHHc-CCCCccccCCCCCHHHHhcch
Confidence            999999777775 899999999999999998864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=8.1e-23  Score=137.78  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=95.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC-
Q 048410            5 VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH-   83 (151)
Q Consensus         5 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~-   83 (151)
                      .|.|+..+..++++.|++.|.++....+.  .|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+ 
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~--~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDE--HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCST--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHH
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhccc
Confidence            35666667778888888888887442453  4999999999999999999999999988 6789999999999999998 


Q ss_pred             --HHHHHHHHhhccccccccCCCCCCcccc--------cCHHHHHHHHHh
Q 048410           84 --TQMVLRLIDVDRNLVRVQGREGVTPLHY--------GNVDLLYKFLAA  123 (151)
Q Consensus        84 --~~~~~~ll~~~~~~~~~~~~~~~t~l~~--------~~~~~~~~ll~~  123 (151)
                        .++++.|++.+...++..+..|.||||+        ++.++++.|+..
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence              6778888888633489999999999997        488999887765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=8.5e-24  Score=144.67  Aligned_cols=136  Identities=18%  Similarity=0.182  Sum_probs=102.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc--ccCCCCCCcHHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA--RKQNQYGFSPLHLAL   79 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~t~L~~a~   79 (151)
                      +||||.|++.|+.++|++|++.+............+.||||+|+..|+.+++++|++.+++..  +..+.. .||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            389999999999999999999987211100000125689999999999999999999986421  222223 89999999


Q ss_pred             hcCCHHHHHHHHhhccccccc--cCCCCCCcccc-----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           80 QNSHTQMVLRLIDVDRNLVRV--QGREGVTPLHY-----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~~~~--~~~~~~t~l~~-----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ..|+.+++++|++.|++ ++.  .+..|.|||+.     |+.+++++|+. .|+       .|.||+++|++++.
T Consensus       172 ~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~-~ga-------~~~taL~~Aa~~g~  237 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPV-------MLAYAEIHEFEYGE  237 (376)
T ss_dssp             HTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHH-------HHHHHHHCTTTTTT
T ss_pred             HCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHh-CCC-------ccchHHHHHHHCCC
Confidence            99999999999999988 666  77888999986     78999977776 442       37889999887754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=5.3e-22  Score=128.81  Aligned_cols=105  Identities=14%  Similarity=0.145  Sum_probs=96.0

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccC-CCCCCcccc----
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHY----  111 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~----  111 (151)
                      |.||||+|+..|+.++++.|++ +.++ +..|..|.||||+|+..|+.+++++|++.|++ ++..+ ..|.||||+    
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHc
Confidence            7899999999999999999999 7766 67799999999999999999999999999999 88888 789999998    


Q ss_pred             cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410          112 GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      ++.++++.|+. .|++++.++..|.||+|+|++.
T Consensus       122 g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A          122 VRPEVVEALVE-LGADIEVEDERGLTALELAREI  154 (244)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHH
Confidence            99999966665 5899999999999999999864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=5.5e-21  Score=106.51  Aligned_cols=87  Identities=31%  Similarity=0.555  Sum_probs=79.7

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----c
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G  112 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~  112 (151)
                      |.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..++.+++++|++.|++ ++.++..|.|||++    +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence            789999999999999999999999887 67799999999999999999999999999999 99999999999998    8


Q ss_pred             CHHHHHHHHHhCCC
Q 048410          113 NVDLLYKFLAACPE  126 (151)
Q Consensus       113 ~~~~~~~ll~~~~~  126 (151)
                      +.+++++|+.. |+
T Consensus        80 ~~~~~~~Ll~~-ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEA-GA   92 (93)
T ss_dssp             CHHHHHHHHHT-TC
T ss_pred             CHHHHHHHHHc-CC
Confidence            99999777654 44

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=4.2e-21  Score=110.96  Aligned_cols=103  Identities=22%  Similarity=0.287  Sum_probs=92.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|+||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.+++. +..+..|.|||++|+..
T Consensus        10 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~~~   85 (115)
T 2l6b_A           10 NTPLHNAAKNGHAEEVKKLLSKGADV-NARSK--DGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKN   85 (115)
T ss_dssp             CCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCS--SSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC--CCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHC
Confidence            47999999999999999999999886 44453  4899999999999999999999999887 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPL  109 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l  109 (151)
                      ++.+++++|++.|++ ++..+..+.+|-
T Consensus        86 ~~~~~~~~Ll~~ga~-~n~~~~~~~~~~  112 (115)
T 2l6b_A           86 GHHEIVKLLDAKGAD-VNARSWGSSHHH  112 (115)
T ss_dssp             TCHHHHHHHHTTSSS-HHHHSCCCC---
T ss_pred             CCHHHHHHHHHcCCC-CCcCCccccccc
Confidence            999999999999999 999999998874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.5e-19  Score=123.32  Aligned_cols=108  Identities=18%  Similarity=0.077  Sum_probs=97.7

Q ss_pred             CCchHHHHHhc-CCHHHHHHHHHhCCCccccCC--CCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc--
Q 048410           37 VDTPLHIAASM-GHVNFALEIMRLKPSFARKQN--QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY--  111 (151)
Q Consensus        37 ~~t~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~--~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~--  111 (151)
                      +.++||.|+.. ++.++++.|++.|+++ +..+  ..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+  
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence            35799999999 9999999999999888 5556  7899999999999999999999999999 99999999999998  


Q ss_pred             --cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          112 --GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       112 --~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                        ++.+++++|+. .|++++.+|..|.||||+|+....
T Consensus       277 ~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~  313 (368)
T 3jue_A          277 ILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETAN  313 (368)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCC
Confidence              99999966665 589999999999999999987653

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.80  E-value=4.3e-19  Score=125.60  Aligned_cols=107  Identities=21%  Similarity=0.152  Sum_probs=96.1

Q ss_pred             CchHHHHHhcCCHHHHHHHHHhCCCccccC------CCCCCcHHHHHHh---cCCHHHHHHHHhhccccccccCCCCCCc
Q 048410           38 DTPLHIAASMGHVNFALEIMRLKPSFARKQ------NQYGFSPLHLALQ---NSHTQMVLRLIDVDRNLVRVQGREGVTP  108 (151)
Q Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~~t~L~~a~~---~~~~~~~~~ll~~~~~~~~~~~~~~~t~  108 (151)
                      .+.|+.|+..|+.+.++.|++.|+++ +..      +..|.||||+|+.   .|+.+++++|++.|++ ++.+|..|.||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~Tp  210 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA  210 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcH
Confidence            46799999999999999999999887 444      7789999999976   8999999999999999 99999999999


Q ss_pred             ccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          109 LHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       109 l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ||+    ++.++++.|+. .|++++.+|..|.||||+|+++..
T Consensus       211 Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~  252 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHH  252 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHH-TCCCCSCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC
Confidence            998    99999966655 689999999999999999987653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.80  E-value=2e-21  Score=132.98  Aligned_cols=128  Identities=15%  Similarity=0.075  Sum_probs=100.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhh--hhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccc-cCCCCCCcHHHHHH
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLL--DQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR-KQNQYGFSPLHLAL   79 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~~t~L~~a~   79 (151)
                      ||||.|+..|+.++|++|++.|++..  .....   +.||||+|+..|+.+++++|++.|++... ..+..|.||||+|+
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~---~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa  206 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE---NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA  206 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH---HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCCC---CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHH
Confidence            69999999999999999999997421  11111   26999999999999999999999987622 15778999999999


Q ss_pred             -hcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           80 -QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        80 -~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                       ..|+.+++++|++.|+.        +.||++.    ++.+++++|+. .|++++.++    ++++.|++++
T Consensus       207 ~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~-~ga~~~~~~----~~l~~A~~~g  265 (376)
T 2aja_A          207 VGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIAR-HVNRLKEMH----DAFKLSNPDG  265 (376)
T ss_dssp             STTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHH-HHHHHHHHH----TTTTTTSSSS
T ss_pred             HHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHh-cCccccccc----HHHHHHHHCC
Confidence             99999999999996643        7899988    88898866655 466665544    3556655543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=9.6e-19  Score=100.33  Aligned_cols=84  Identities=24%  Similarity=0.374  Sum_probs=51.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ++||.|+..|+.+++++|++.+.++ +..+.  .|.||||+|+..++.+++++|++.+++. +..|..|.||||+|+..+
T Consensus        26 t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~--~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~  101 (110)
T 2zgd_A           26 KKLLEAARAGQDDEVRILMANGADV-AAKDK--NGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNG  101 (110)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCC-CccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHHHHcC
Confidence            5666666666666666666666554 33332  2666666666666666666666666554 445666666666666666


Q ss_pred             CHHHHHHH
Q 048410           83 HTQMVLRL   90 (151)
Q Consensus        83 ~~~~~~~l   90 (151)
                      +.+++++|
T Consensus       102 ~~~~~~~L  109 (110)
T 2zgd_A          102 NEDLAEIL  109 (110)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            66666554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.80  E-value=4.8e-19  Score=118.14  Aligned_cols=108  Identities=20%  Similarity=0.145  Sum_probs=96.2

Q ss_pred             CchHHHHHhcCCHHHHHHHHHhCCCcccc-----CCCCCCcHHHHHHhc---CCHHHHHHHHhhccccccccCCCCCCcc
Q 048410           38 DTPLHIAASMGHVNFALEIMRLKPSFARK-----QNQYGFSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPL  109 (151)
Q Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~-----~~~~~~t~L~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l  109 (151)
                      .++|+.|+..++.+.++.++..+.++...     .+..|.||||+|+..   ++.+++++|++.|++ ++.++..|.|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCHH
Confidence            35699999999999999999999887332     588899999999997   899999999999999 999999999999


Q ss_pred             cc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          110 HY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       110 ~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |+    ++.++++.|+. .|++++.+|..|.||||+|+++..
T Consensus       231 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~  271 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHH  271 (301)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC
Confidence            98    99999966665 689999999999999999997653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=4.8e-19  Score=116.94  Aligned_cols=107  Identities=21%  Similarity=0.175  Sum_probs=95.9

Q ss_pred             chHHHHHhcCCHHHHHHHHHhCCCcc-----ccCCCCCCcHHHHHHhc---CCHHHHHHHHhhccccccccCCCCCCccc
Q 048410           39 TPLHIAASMGHVNFALEIMRLKPSFA-----RKQNQYGFSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPLH  110 (151)
Q Consensus        39 t~l~~a~~~~~~~~~~~ll~~~~~~~-----~~~~~~~~t~L~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~  110 (151)
                      ++|+.|+..+..+.++.++..+.+..     +..+..|.||||+|+..   ++.+++++|++.|++ ++.+|..|.||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence            58899999999999999999998752     33478899999999999   899999999999999 9999999999999


Q ss_pred             c----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          111 Y----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       111 ~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +    ++.++++.|+. .|++++.+|..|.||||+|+++..
T Consensus       211 ~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~  250 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKH  250 (278)
T ss_dssp             HHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCC
Confidence            8    99999966665 789999999999999999998653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=5.4e-18  Score=97.18  Aligned_cols=83  Identities=28%  Similarity=0.340  Sum_probs=76.3

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----  111 (151)
                      .|.|+||+|+..|+.+++++|++.+++. +..|..|.||||+|+..|+.+++++|++.|++ ++.++..|.|||++    
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHHHHc
Confidence            3889999999999999999999998887 67789999999999999999999999999999 99999999999998    


Q ss_pred             cCHHHHHHH
Q 048410          112 GNVDLLYKF  120 (151)
Q Consensus       112 ~~~~~~~~l  120 (151)
                      ++.++++.|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            888888543

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=80.77  E-value=1.6  Score=19.19  Aligned_cols=18  Identities=28%  Similarity=0.303  Sum_probs=13.6

Q ss_pred             HHHHHHHcCCHHHHHHHH
Q 048410            4 YVILAAQAGNVDALYELI   21 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll   21 (151)
                      -+..||..|+++.++.|-
T Consensus        16 qiyvA~seGd~etv~~Le   33 (40)
T 1gp8_A           16 QMDAAASKGDVETYRKLK   33 (40)
T ss_dssp             HHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHH
Confidence            357788888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 8e-11
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLH+A+ MGH+     +++   S     N    +PLH+A +  HT++   L+      V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-V 59

Query: 99  RVQGREGVTPLHY----GNVDLLYKFLAACPE 126
             + ++  TPLH     G+ +++   L     
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
            L AQ G+V     LI                 TPLH+A+  G++    + +    +   
Sbjct: 269 HLVAQEGHVPVADVLIKHGV---MVDATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVN 324

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
            + + G+SPLH A Q  HT +V  L+    +       +G TPL  
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 7e-08
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 7  LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
          +A+  G++  +  L+   A   +  +    V+TPLH+AA  GH   A  +++ K      
Sbjct: 6  VASFMGHLPIVKNLLQRGASP-NVSNV--KVETPLHMAARAGHTEVAKYLLQNKAKV-NA 61

Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
          + +   +PLH A +  HT MV  L++ + N
Sbjct: 62 KAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 7   LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
           +A    N+D +  L+                 TPLHIAA    V  A  +++     A  
Sbjct: 171 VAVHHNNLDIVKLLLPRGG---SPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANA 226

Query: 67  QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           ++  G +PLHLA Q  H +MV  L+   +    +  + G+TPLH 
Sbjct: 227 ESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHL 270

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 3   HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPS 62
             + +AA+ G V     L+  DA+  +   +     TPLH+A    +++  ++++  +  
Sbjct: 134 TPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGL--TPLHVAVHHNNLD-IVKLLLPRGG 189

Query: 63  FARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
                   G++PLH+A + +  ++   L+    +    +  +GVTPLH 
Sbjct: 190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHL 237

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           TPLH+AA  GH      ++  K +     N+ G +PLHL  Q  H  +   LI      V
Sbjct: 233 TPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-V 290

Query: 99  RVQGREGVTPLHY 111
               R G TPLH 
Sbjct: 291 DATTRMGYTPLHV 303

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 36/144 (25%)

Query: 1   MSHYVIL-AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL 59
           +S+ ++   A +G ++ L E I  D  L  + D+     T LH A S GH      +++L
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQL 59

Query: 60  KPSFAR--------------------------------KQNQYGFSPLHLALQNSHTQMV 87
                                                   NQ G +PLH A   +  ++ 
Sbjct: 60  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 119

Query: 88  LRLIDVDRNLVRVQGREGVTPLHY 111
           + L++   N    +     T +H 
Sbjct: 120 VMLLEGGAN-PDAKDHYEATAMHR 142

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
             AA     +    L+   A   D  D   +  T +H AA+ G++     ++    +   
Sbjct: 108 HYAASKNRHEIAVMLLEGGANP-DAKDH--YEATAMHRAAAKGNLKMIHILLY-YKASTN 163

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY--GNVDLLYKFL 121
            Q+  G +PLHLA      +    L+    + + ++ +E  TPL    G + L+ K +
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAKGGLGLILKRM 220

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 3   HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFV------DTPLHIAASMGHVNFA--L 54
           H +I +   G   A    +      + +    P        ++  +        +    L
Sbjct: 183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

Query: 55  EIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYG 112
           ++  +  +    Q+  G + L++A +  +  +V  L+D   +   +  + G+ P+ +G
Sbjct: 243 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFG 299

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.0 bits (113), Expect = 7e-08
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPS 62
           +L     + +   + +W DA+                +AA  G  + AL+ + L      
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAHKKGIKSE-----VICFVAAITGCSS-ALDTLCLLLTSDE 117

Query: 63  FARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-GVTPLHY 111
             +      +    LA +N H  ++ RL ++    +    +         
Sbjct: 118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 167

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 11/113 (9%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD----TPLHIAASMGHVNFALEIMRLKP 61
            +AA  G   AL  L      LL   + V  +         +AA  GH++    +  L P
Sbjct: 95  FVAAITGCSSALDTLC----LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 62  SF-ARKQNQYGFSPLHLALQNSHTQMVLRLIDV--DRNLVRVQGREGVTPLHY 111
           +          +    LA +N H  ++ RL ++        +Q          
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 203

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 13/129 (10%), Positives = 26/129 (20%), Gaps = 23/129 (17%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
           I   + G       +      L +       +     ++   G  +   +          
Sbjct: 228 IHEFEYGEKYVNPFIARHVNRLKE-------MHDAFKLSNPDGVFDLVTKS-------EC 273

Query: 66  KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL----VRVQGREGVTPLHY----GNVDLL 117
            Q  Y    L           +  L+ +              +    L      GN    
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 333

Query: 118 YKFLAACPE 126
              L + P 
Sbjct: 334 -ALLLSIPS 341

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 8e-08
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL-KPSFA 64
           + AA+ G+V+ L  L+ E    ++  D +        + +S      A+  + L   +  
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 65  RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
             + + G +PL LA++  H  +V RL++ +   +     +G T L  
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
           TPL +A    H+     ++  +       +  G + L LA++    ++   L  
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
          +  L  A     V+   +++    +   ++ + G++PLH A+Q S   +V
Sbjct: 6  NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 47/168 (27%)

Query: 6   ILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFAL----------- 54
           I A Q  +VD + +L+   A +  Q +      TPLH A  M   +              
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 55  ---------------------EIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI-- 91
                                ++   K +   + + YGF+    A      + +  L   
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 92  -------DVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESI 128
                     +       + G T L      G+V++L   L      +
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           T LH AA + ++     ++  K S   KQ++ G +P+ LA Q    ++V+ LI    + V
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-V 247

Query: 99  RVQGREGVTPLHY----GNVDLLYKFLAAC 124
                   T         + +++      C
Sbjct: 248 EAVDATDHTARQLAQANNHHNIV-DIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 3e-06
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 38  DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
           ++P+ +           E +  + S      ++  + LH    NS  +    LI  +   
Sbjct: 1   ESPIKLHTEAAGSYAITEPI-TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 98  VRVQG-------REGVTPLHY 111
               G        +  TPL  
Sbjct: 60  CIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 38  DTPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMV 87
            TP+ +AA  G     +E++     + +     +    +   LA  N+H  +V
Sbjct: 222 KTPIMLAAQEGR----IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 2e-07
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQM 86
          + PLH A          E++  KPS   +++Q G  PLH ++     ++
Sbjct: 1  NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 49

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 74  PLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
           PLH A   +    V  L+    +L+  + ++G  PLH+
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW 40

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 9e-05
 Identities = 18/73 (24%), Positives = 30/73 (41%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
            PLH AAS+G +     +  L  S    Q++ G++PL  AL   H    + L++      
Sbjct: 140 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 199

Query: 99  RVQGREGVTPLHY 111
            +   +G      
Sbjct: 200 DLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 6e-04
 Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 7  LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNF 52
           A        + EL+     LL Q D+      PLH + S      
Sbjct: 6  QACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEI 49

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 8e-07
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 39  TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
           T LH+AA+ G+      +++ +      ++  G++PLH A      +    L++   + +
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-M 258

Query: 99  RVQGREGVTPLHY 111
               + G T    
Sbjct: 259 EAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 5e-04
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 10  QAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPSFARK 66
             G  + L  LI       D   +     TPLH AA  G      E  R+          
Sbjct: 208 AKGYTEVLKLLIQARY---DVNIKDYDGWTPLHAAAHWGK----EEACRILVENLCDMEA 260

Query: 67  QNQYGFSPLHLALQN 81
            N+ G +   +A ++
Sbjct: 261 VNKVGQTAFDVADED 275

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 71  GFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHY 111
           G + LHLA+ + H   +  L+        + +Q   G T LH 
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL 51

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 38 DTPLHIAASMGHVNFALEIMRLK--PSFARKQNQYGFSPLHLALQNSHTQM 86
          DT LH+A    H  F   ++       +   QN  G + LHLA        
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 38 DTPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQM 86
          D+ LH+A         +E++R      +F   QN    +PLHLA+  +  ++
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 54

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-05
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 1   MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
               + LA+  G +  +  L+   A             T LH+A  + + +    +++  
Sbjct: 111 GHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 168

Query: 61  PSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
               R     G+SP  L      T++  +L  
Sbjct: 169 ADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 9e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 71  GFSPLHLALQNSHTQMVLRLIDV---DRNLVRVQGREGVTPLHY 111
           G S LHLA+ +    + + +I     D   +  Q     TPLH 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFAR---KQNQYGFSPLHLALQNSHTQM 86
          DTPLHIA   G++     ++ L     R     N    +PLHLA+  +   +
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 55

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 71  GFSPLHLALQNSHTQMVLRLIDVDRNL---VRVQGREGVTPLHY 111
           G +PLH+A+   +   V RL+++ +     + +      TPLH 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 5e-04
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 20  LIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLAL 79
           L+   A   D             I A   +    ++++    +    Q   G S LH A 
Sbjct: 129 LLERGA---DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185

Query: 80  QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLL 117
                 +V  L+    +   ++     TPL        +D+L
Sbjct: 186 GRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 40/129 (31%)

Query: 3   HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD---TPLHIAASMGHVNFALEIMRL 59
           H +  A +  ++  L +   +   L ++I      +   T LH+A        +L I+  
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT-SLHIVDF 66

Query: 60  KPS------------------------------------FARKQNQYGFSPLHLALQNSH 83
                                                       N+ G +PL +A +  H
Sbjct: 67  LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 126

Query: 84  TQMVLRLID 92
                 L  
Sbjct: 127 EHCEELLTQ 135

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.004
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 47  MGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
            GH+     +++   S    +N  G +   LA      ++V  +  
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.82
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.82
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.82
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.82
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.81
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.8
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.76
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.71

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.8e-29  Score=158.29  Aligned_cols=142  Identities=18%  Similarity=0.134  Sum_probs=122.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc-----------------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA-----------------   64 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-----------------   64 (151)
                      |+|||+||+.|+.+.|+.|++.++..+..++.  .|.||||+|+..|+.+++++|++.++++.                 
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~--~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCT--TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCC--CCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            68999999999999999999988776666664  49999999999999999999988765310                 


Q ss_pred             -----------------------------------------------------ccCCCCCCcHHHHHHhcCCHHHHHHHH
Q 048410           65 -----------------------------------------------------RKQNQYGFSPLHLALQNSHTQMVLRLI   91 (151)
Q Consensus        65 -----------------------------------------------------~~~~~~~~t~L~~a~~~~~~~~~~~ll   91 (151)
                                                                           ...+..|+||||+++..|+.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccc
Confidence                                                                 224577889999999999999999999


Q ss_pred             hhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCcccccccc
Q 048410           92 DVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKF  145 (151)
Q Consensus        92 ~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~  145 (151)
                      +.+..+++.++.+|.||||+    ++.+++++|+...|++++.+|.+|.||||+|+++
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            98866588999999999998    8999999989888999999999999999998753

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.3e-27  Score=152.99  Aligned_cols=145  Identities=21%  Similarity=0.108  Sum_probs=107.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc-----------------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA-----------------   64 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-----------------   64 (151)
                      +||||.|+++|+.+++++|++.|++.......+..|.||||+|+..|+.+++++|++.|+++.                 
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~   89 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR   89 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccC
Confidence            578888888888888888887765532222122347788888888888888888777765321                 


Q ss_pred             --------------------------------------------------------------ccCCCCCCcHHHHHHhcC
Q 048410           65 --------------------------------------------------------------RKQNQYGFSPLHLALQNS   82 (151)
Q Consensus        65 --------------------------------------------------------------~~~~~~~~t~L~~a~~~~   82 (151)
                                                                                    +.++..|.||||+|+..+
T Consensus        90 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~  169 (255)
T d1oy3d_          90 AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK  169 (255)
T ss_dssp             CHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred             chHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccc
Confidence                                                                          123566778888888888


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+++++|++.++......+..|.||||.    ++.++++.|++ .|++++.+|..|.||||+|+++.+
T Consensus       170 ~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             ccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCC
Confidence            88888888888877444456788999987    88999976665 688999999999999999988764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1e-28  Score=142.43  Aligned_cols=105  Identities=19%  Similarity=0.281  Sum_probs=96.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +|||++|++.|+.++|++|++.|.++ +..+.  .|.||||+|+..++.++++++++.|++. +.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~--~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE--GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSS--SSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccc--ccccccccccccccccccccccccccee-eecccccccchhhhhhc
Confidence            68999999999999999999999886 44453  4999999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      |+.+++++|++.|++ ++.+|..|.|||++
T Consensus        79 ~~~~~v~~Ll~~Gad-~~~~d~~G~t~l~~  107 (118)
T d1myoa_          79 GHVSCVKLLLSKGAD-KTVKGPDGLTALEA  107 (118)
T ss_dssp             TCCHHHHHHHTTCCC-SSSSSSSTCCCCCT
T ss_pred             Cchhhhhhhhccccc-ceeeCCCCCCHHHH
Confidence            999999999999999 99999999999998

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=143.68  Aligned_cols=139  Identities=16%  Similarity=0.274  Sum_probs=126.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ++||.|+..|+.++|+.|+++|+++ +..+.  .|.||||+|+ .++.+++++|++.++++ +..+..+.++++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~--~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNG--FGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT--TSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCC--cccccccccc-ccccccccccccccccc-ccccccCccccccccccc
Confidence            6899999999999999999999987 55553  4999999875 78999999999999887 677899999999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +...+..+++.+.. ++..+..|.+|++.    ++.++++.|+...+.+.+.++.+|.||||+|+++..
T Consensus        78 ~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          78 FLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            99999999999998 89999999999997    889999999998888999999999999999998754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=9.7e-27  Score=139.63  Aligned_cols=139  Identities=21%  Similarity=0.286  Sum_probs=123.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      +|||+.|++.|+.++|++|++.|++..  .+  ..|.||||+|+..++.+.++.++...... ...+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~--~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TD--WLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CC--TTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cc--cCCCccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            589999999999999999999998753  33  34999999999999999999998877666 45577788999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      .+.++++++...+++ ...++..|.|||++    ++.+++++|+ ..|++++.+|.+|.||+|+|++++.
T Consensus        78 ~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll-~~gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          78 GHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeecc-ccccCCcccCCCCCCHHHHHHHcCC
Confidence            999999999999998 88999999999998    9999996555 5689999999999999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=139.22  Aligned_cols=138  Identities=21%  Similarity=0.282  Sum_probs=120.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      +.|+.|+..|+.++|++|++.+..-.+..+.  .|.||||+|+. ++.+++++|++.+.++ +..+..|.+|++.++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~--~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNR--FGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT--TSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCC--CCCcccccccc-cccccccccccccccc-cccccccccccccccccc
Confidence            4699999999999999999986543355553  59999998864 8889999999999887 667888999999999999


Q ss_pred             CHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           83 HTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.++++++++.+++ ++.++..|.|||++    ++.+++++|+  .|++++.+|.+|+||||+|+++..
T Consensus        80 ~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~--~~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA--AESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH--TTSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             cccccccccccccc-cccccCCCCeeecccccccccccccccc--ccccccccCCCCCCHHHHHHHcCC
Confidence            99999999999998 89999999999998    9999996554  478999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-26  Score=144.98  Aligned_cols=131  Identities=23%  Similarity=0.251  Sum_probs=103.3

Q ss_pred             HHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHH
Q 048410            8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV   87 (151)
Q Consensus         8 a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~   87 (151)
                      ++..|+.+++++|++.+.++ +..+  ..|.||||+|+..++.+++++|++.|.++ +..+..|.||||+++..++.+++
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d~-~~~d--~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~  152 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQV-NAVN--QNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMI  152 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCC--TTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhHHHhccCcee-EeeC--CCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchh
Confidence            33333344444444444333 2233  34889999999999999999999988877 67788899999999999999999


Q ss_pred             HHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           88 LRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        88 ~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      ++|...+.+ ++..+.+|.|||+.    ++.+++++|+. .|++++.+|.+|+||||+|+.
T Consensus       153 ~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A~~  211 (223)
T d1uoha_         153 HILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG  211 (223)
T ss_dssp             HHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHCCT
T ss_pred             hhhccccce-eeeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHC
Confidence            999988888 89999999999998    88999977765 689999999999999999854

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-26  Score=145.18  Aligned_cols=140  Identities=23%  Similarity=0.260  Sum_probs=100.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHH----------------------------
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFAL----------------------------   54 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~----------------------------   54 (151)
                      +.++.+|+.|+.+.|+.++..++.....+|.  .|+||||+|+..|+.++++                            
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~--~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCC--CCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            4455556666666666666555554444443  2566666666555555554                            


Q ss_pred             -----HHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCC
Q 048410           55 -----EIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACP  125 (151)
Q Consensus        55 -----~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~  125 (151)
                           +|++.+.++ +..|..|.||||+|+..|+.+++++|++.|++ ++..+..|.||++.    +..+++ .++...+
T Consensus        83 ~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~-~~L~~~~  159 (223)
T d1uoha_          83 DEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMI-HILLYYK  159 (223)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTT
T ss_pred             cchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchh-hhhcccc
Confidence                 555555544 56688889999999999999999999998888 88888899999887    777777 4455577


Q ss_pred             CCcccccccCCCccccccccCC
Q 048410          126 ESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       126 ~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      .+++.+|.+|+||||.|+++++
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~  181 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEER  181 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTC
T ss_pred             ceeeeccCCCCceeccccccCc
Confidence            8899999999999999887653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=1.4e-25  Score=147.06  Aligned_cols=137  Identities=18%  Similarity=0.199  Sum_probs=116.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc------------------
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA------------------   64 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~------------------   64 (151)
                      |+|+.||..|+.++|++|++.|+++ +..+.  .|.||||+|+..|+.+++++|++++.+..                  
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~--~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADI-NYANV--DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCT-TCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCC-CccCC--CCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            7899999999999999999999886 55554  38999999999999999998888765310                  


Q ss_pred             --------------------------------------------------------------------------ccCCCC
Q 048410           65 --------------------------------------------------------------------------RKQNQY   70 (151)
Q Consensus        65 --------------------------------------------------------------------------~~~~~~   70 (151)
                                                                                                ...+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence                                                                                      113455


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410           71 GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus        71 ~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      |.||||.++..|+.+++++|++.|++ ++.++..|.||||+    ++.++++.|++ .|++++.+|..|.||||+|++
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH
Confidence            77888999999999999999999998 89999999999998    99999966664 789999999999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-26  Score=133.28  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=101.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      +.|+.|++.|+.++|++|+++|.++ +.++.  .|.||||+|+..++.++++++++.+.+. +..|..|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~--~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPND--EGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT--TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccc--cccccccccccccccccccccccccccc-ccccccCcccccccchhh
Confidence            5789999999999999999999986 55553  4999999999999999999999999887 778999999999999999


Q ss_pred             CHHHHHHHHhhccccccccCC-CCCCcccc------cCHHHHHHHHH
Q 048410           83 HTQMVLRLIDVDRNLVRVQGR-EGVTPLHY------GNVDLLYKFLA  122 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~~~~~~~-~~~t~l~~------~~~~~~~~ll~  122 (151)
                      +.+++++|++.|++ ++..+. .+.||+.+      ++.+++++|+.
T Consensus        79 ~~~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          79 NVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            99999999999999 887764 47887654      77899977765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.8e-26  Score=131.28  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=100.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCC-cHHHHHHh
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGF-SPLHLALQ   80 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-t~L~~a~~   80 (151)
                      .++||.|++.|+.++|++|++.|.++ +..+.  .|.||+|+|+ .|+.+++++|++.|+++ +..+..+. +|||+|++
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~--~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP-NAPNS--YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   78 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS--SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc-ccccc--cccccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            47899999999999999999999886 44443  4899999765 68999999999999988 55566655 69999999


Q ss_pred             cCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHH
Q 048410           81 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA  122 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~  122 (151)
                      .|+.+++++|++.|++ ++.+|..|.||+++    ++.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999 99999999999998    99999977654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.9e-25  Score=128.59  Aligned_cols=104  Identities=15%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             CchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cC
Q 048410           38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GN  113 (151)
Q Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~  113 (151)
                      .|||.+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.++++++++.|++ ++.++..|+||||+    ++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCc
Confidence            48999999999999999999999887 67899999999999999999999999999999 99999999999998    88


Q ss_pred             HHHHHHHHHhCCCCcccccccCCCccccccc
Q 048410          114 VDLLYKFLAACPESILQVTIYFPILLPFSSK  144 (151)
Q Consensus       114 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~  144 (151)
                      .+++++|+. .|++++.+|..|.||+|+|..
T Consensus        81 ~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          81 VSCVKLLLS-KGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             CHHHHHHHT-TCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhhhc-ccccceeeCCCCCCHHHHHhH
Confidence            999966665 689999999999999999843

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8e-24  Score=133.00  Aligned_cols=140  Identities=22%  Similarity=0.189  Sum_probs=117.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHH----hChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc-------------
Q 048410            2 SHYVILAAQAGNVDALYELIW----EDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA-------------   64 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~----~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-------------   64 (151)
                      +||||.||.+|+.+++++|++    .|.++ +..+.  .|.||||+|+..|+.+++++|++.++...             
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~--~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNN--LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCC--CCCccceehhcccccccccccccccccccccccccccccccc
Confidence            589999999999999999986    44444 44443  49999999999999999999998876321             


Q ss_pred             ---------------------------------------------------------ccCCCCCCcHHHHHHhcCCHHHH
Q 048410           65 ---------------------------------------------------------RKQNQYGFSPLHLALQNSHTQMV   87 (151)
Q Consensus        65 ---------------------------------------------------------~~~~~~~~t~L~~a~~~~~~~~~   87 (151)
                                                                               ......+.++++.++..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                     11234577889999999999999


Q ss_pred             HHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccC
Q 048410           88 LRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFS  146 (151)
Q Consensus        88 ~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~  146 (151)
                      +++++.+.. ...++..|.|||++    ++.+++++|+ ..|++++.+|.+|.||||+|+++.
T Consensus       161 ~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~Gad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         161 QLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             hhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHhCC
Confidence            999999888 88899999999998    9999997766 568999999999999999998764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-24  Score=135.98  Aligned_cols=141  Identities=22%  Similarity=0.178  Sum_probs=117.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCc-----cccCCCCCCcHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSF-----ARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~t~L~   76 (151)
                      +||||+|++.|+.+++++|++.|+++ ...+.  .|.+||++++..+..++++.++..+...     .......|.|||+
T Consensus        40 ~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~--~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~  116 (221)
T d1iknd_          40 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDF--RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  116 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT--TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             Cccccccccccccccccccccccccc-ccccc--ccccccccccccccccccchhhhhcccccccccccccccccchhhh
Confidence            58999999999999999999999876 44443  4889999999999999999998875432     2334566889999


Q ss_pred             HHHhcCCHHHHHHHHhhcccccccc-CCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           77 LALQNSHTQMVLRLIDVDRNLVRVQ-GREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        77 ~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      .|+..++.+++.+++..++. ++.. +.+|.||||.    ++.+++++|+ ..|++++.+|..|.||+|+|+++.+
T Consensus       117 ~a~~~~~~~~~~~l~~~~~~-~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll-~~gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         117 LASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             HHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHH-TTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             HHhhcCChhheeeecccCcc-cccccccCCCCccccccccccHHHHHHHH-hcCCcccccCCCCCCHHHHHHHCCC
Confidence            99999999999999999888 5554 4679999998    9999997666 4789999999999999999988654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=7.5e-25  Score=142.46  Aligned_cols=141  Identities=18%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHh--------ChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCc
Q 048410            2 SHYVILAAQAGNVDALYELIWE--------DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFS   73 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~--------~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   73 (151)
                      .||||+|+..|+.++|+.|+..        |+++ +..+.  .|.||||+|+..|+.+++++|++.|+++ +.++..|.|
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~--~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t  109 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDC--DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERS  109 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCC--CCCeeecccccccccccccccccccccc-ccccccccc
Confidence            3788888888888877666443        4444 33343  4888888888888888888888887765 445556666


Q ss_pred             HHHHHHhcCCH---------------------------------------------------------------------
Q 048410           74 PLHLALQNSHT---------------------------------------------------------------------   84 (151)
Q Consensus        74 ~L~~a~~~~~~---------------------------------------------------------------------   84 (151)
                      |+++++..++.                                                                     
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            66665555544                                                                     


Q ss_pred             -----------HHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           85 -----------QMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        85 -----------~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                                 +++.+++.........++..|.|||+.    ++.+++++|+. .|++++.+|.+|.||||+|++++.
T Consensus       190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCC
Confidence                       444433332222156678888999988    88999976665 688999999999999999998763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7e-24  Score=138.30  Aligned_cols=143  Identities=23%  Similarity=0.233  Sum_probs=113.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc-----------------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA-----------------   64 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~-----------------   64 (151)
                      +|.|+.|++.|+.++|++|++.|+++....+.  .|.||||+|+..|+.+++++|++.+....                 
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~--~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCC--CCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            47899999999999999999999987444443  38999999999999999998887654210                 


Q ss_pred             ----------------------------------------------------------ccCCCCCCcHHHHHHhcCCHHH
Q 048410           65 ----------------------------------------------------------RKQNQYGFSPLHLALQNSHTQM   86 (151)
Q Consensus        65 ----------------------------------------------------------~~~~~~~~t~L~~a~~~~~~~~   86 (151)
                                                                                ...+..|.||||+|++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                      0112447889999999888777


Q ss_pred             HHHHHhh--------------------------------------ccccccccCCCCCCcccc----cCHHHHHHHHHhC
Q 048410           87 VLRLIDV--------------------------------------DRNLVRVQGREGVTPLHY----GNVDLLYKFLAAC  124 (151)
Q Consensus        87 ~~~ll~~--------------------------------------~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~  124 (151)
                      +++|++.                                      |++ ++.++..|.|||+.    ++.+++++|+...
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            7776643                                      333 45567788999997    8899998888888


Q ss_pred             CCCcccccccCCCccccccccCC
Q 048410          125 PESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       125 ~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      |++++.+|.+|.||||+|+++..
T Consensus       243 g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         243 HIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCcCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999998764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=142.36  Aligned_cols=140  Identities=24%  Similarity=0.270  Sum_probs=111.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcC
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNS   82 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~   82 (151)
                      ||||.||+.|+.++|++|++.|+++ +..+.  .|.||||+|+..|+.+++++|+++|+++ +..+..|.|||++|+..|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i-n~~d~--~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP-NVSNV--KVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-CCSSS--CCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcC
Confidence            7999999999999999999999886 44453  4999999999999999999999999987 677999999999999999


Q ss_pred             CHHHHHHHHhhcccc--------------------------------ccccCCCCCCcccc----cCHHHHHHHHHhCCC
Q 048410           83 HTQMVLRLIDVDRNL--------------------------------VRVQGREGVTPLHY----GNVDLLYKFLAACPE  126 (151)
Q Consensus        83 ~~~~~~~ll~~~~~~--------------------------------~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~  126 (151)
                      +.+++++|+..+...                                ....+..+.+++..    ++.++++.++. .+.
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~-~~~  156 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDA  156 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH-cCC
Confidence            999988888654431                                22233445555554    67777755554 567


Q ss_pred             CcccccccCCCccccccccCC
Q 048410          127 SILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       127 ~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      +.+..+..|.+||+.|+++.+
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~  177 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNN  177 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTC
T ss_pred             CCCcCCCcCchHHHHHHHcCC
Confidence            777778888888888776553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=9.1e-23  Score=122.17  Aligned_cols=123  Identities=15%  Similarity=0.167  Sum_probs=104.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhh---cCCCCCCchHHHHHhc---CCHHHHHHHHHhCCCccccCCCCCCcHHHH
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQI---DRVPFVDTPLHIAASM---GHVNFALEIMRLKPSFARKQNQYGFSPLHL   77 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~---~~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~   77 (151)
                      .|..|++.+++..++.++..|.+.....   .....|.||||+|+..   +..+++++|++.|+++ +.+|..|.||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            4678899999999999999987653321   1123489999999975   6789999999999987 7789999999999


Q ss_pred             HHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCc
Q 048410           78 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESI  128 (151)
Q Consensus        78 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~  128 (151)
                      |+..|+.+++++|++.|++ ++.+|..|.|||++    ++.++++.|+.......
T Consensus        88 A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            9999999999999999999 99999999999998    99999988877544333

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9e-23  Score=131.25  Aligned_cols=90  Identities=21%  Similarity=0.222  Sum_probs=81.8

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----  111 (151)
                      .|.||||+|+..++.+++++|++.+.......+..|.||||+|+..++.+++++|++.|++ ++.+|..|.|||++    
T Consensus       157 ~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTS
T ss_pred             cCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence            3789999999999999999999999888666788899999999999999999999999999 99999999999998    


Q ss_pred             cCHHHHHHHHHhCCCC
Q 048410          112 GNVDLLYKFLAACPES  127 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~  127 (151)
                      ++.++++.|+. .|++
T Consensus       236 ~~~~i~~~Ll~-~Ga~  250 (255)
T d1oy3d_         236 PNPILARLLRA-HGAP  250 (255)
T ss_dssp             SCHHHHHHHHH-TTCC
T ss_pred             CCHHHHHHHHH-cCCC
Confidence            99999966665 5775

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.7e-22  Score=126.41  Aligned_cols=140  Identities=20%  Similarity=0.145  Sum_probs=109.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCC--------------------------------
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGH--------------------------------   49 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~--------------------------------   49 (151)
                      +||||+||..|+.+++++|++.|+.+ +..+.  .+.++++.++..+.                                
T Consensus        24 ~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (209)
T d1ot8a_          24 ETSLHLAARFARADAAKRLLDAGADA-NSQDN--TGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL  100 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhhcccc-ccccc--cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47889999999999999888887765 33222  13444444444433                                


Q ss_pred             --HHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           50 --VNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        50 --~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                        ....+.|...+.+. +..+..|.|||++++..+...+++.++..+.. ++..+..|.|||++    ++.++++.|++ 
T Consensus       101 ~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-  177 (209)
T d1ot8a_         101 AIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLD-  177 (209)
T ss_dssp             TCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             cchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHH-
Confidence              33344566655554 55688899999999999999999999999998 89999999999998    99999976665 


Q ss_pred             CCCCcccccccCCCccccccccCC
Q 048410          124 CPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       124 ~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      .|++++.+|..|.||||+|+++..
T Consensus       178 ~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         178 NFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCC
Confidence            688999999999999999998764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.9e-23  Score=138.90  Aligned_cols=140  Identities=24%  Similarity=0.312  Sum_probs=124.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .|+|+.|+..++.++++++++.+... ...+.  .|.||++.++..++.+++++|++.|.++ +..+..+.|||+.++..
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~--~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~  307 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANG-NLGNK--SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHY  307 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT--TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHS
T ss_pred             CCHHHHHHHhCcHhHhhhhhcccccc-ccccC--CCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhccc
Confidence            36899999999999999999887765 33443  3889999999999999999999999887 66688899999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.++++++++.|++ ++.++.+|.||||.    ++.+++++|++ .|++++.+|.+|.||||+|++++.
T Consensus       308 ~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         308 GNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             SCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             Ccceeeeeecccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCC
Confidence            999999999999999 99999999999998    99999977765 689999999999999999998754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=4.2e-23  Score=136.13  Aligned_cols=138  Identities=12%  Similarity=0.051  Sum_probs=101.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCH---HHHHHHHHhCCCccccCCCCCCcHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHV---NFALEIMRLKPSFARKQNQYGFSPLHLA   78 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~~t~L~~a   78 (151)
                      +||||+||..|+.++|+.|++.|+++ ..++.  .|.||||.|+..++.   ..+..+++.........|..|+||||++
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~--~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~  184 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDN--MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI  184 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT--TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCc--ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHH
Confidence            48999999999999999999999987 45553  499999999987642   1122233222222345688899999988


Q ss_pred             HhcCC----HH--------HHHHHHhhcccc------------------------------------ccccCCCCCCccc
Q 048410           79 LQNSH----TQ--------MVLRLIDVDRNL------------------------------------VRVQGREGVTPLH  110 (151)
Q Consensus        79 ~~~~~----~~--------~~~~ll~~~~~~------------------------------------~~~~~~~~~t~l~  110 (151)
                      +..+.    ..        ++.+++..+...                                    ++.+|.+|.||||
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh  264 (301)
T d1sw6a_         185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN  264 (301)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHH
T ss_pred             HHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHH
Confidence            75432    22        223333333321                                    4677899999999


Q ss_pred             c----cCHHHHHHHHHhCCCCcccccccCCCcccccc
Q 048410          111 Y----GNVDLLYKFLAACPESILQVTIYFPILLPFSS  143 (151)
Q Consensus       111 ~----~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~  143 (151)
                      +    ++.+++++|+. .|++++.+|..|.|||++|+
T Consensus       265 ~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         265 IAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            8    99999977775 69999999999999999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-23  Score=120.44  Aligned_cols=107  Identities=15%  Similarity=0.164  Sum_probs=95.8

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCC-Ccccc----
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGV-TPLHY----  111 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-t~l~~----  111 (151)
                      +.++||+|+..|+.+++++|++.|+++ +..+..|.||+|.| ..|+.+++++|++.|++ ++..+..+. |||+.    
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVM-MMGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-cccccccccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            568999999999999999999999887 67899999999966 47999999999999999 888888775 68998    


Q ss_pred             cCHHHHHHHHHhCCCCcccccccCCCccccccccCC
Q 048410          112 GNVDLLYKFLAACPESILQVTIYFPILLPFSSKFSP  147 (151)
Q Consensus       112 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~~~  147 (151)
                      ++.++++.|+.. |++++.+|..|.||+|+|+++..
T Consensus        80 g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~  114 (125)
T d1bi7b_          80 GFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGH  114 (125)
T ss_dssp             TCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTC
T ss_pred             cccccccccccc-ccccccccCCCCCHHHHHHHcCC
Confidence            999999777775 88999999999999999998754

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=114.38  Aligned_cols=102  Identities=22%  Similarity=0.252  Sum_probs=91.1

Q ss_pred             chHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCH
Q 048410           39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNV  114 (151)
Q Consensus        39 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~  114 (151)
                      ++|+.|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++++|++.|++ ++..|.+|+||||+    ++.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHH
Confidence            6789999999999999999999987 77899999999999999999999999999999 99999999999998    999


Q ss_pred             HHHHHHHHhCCCCcccccc-cCCCcccccc
Q 048410          115 DLLYKFLAACPESILQVTI-YFPILLPFSS  143 (151)
Q Consensus       115 ~~~~~ll~~~~~~~~~~~~-~g~t~l~~a~  143 (151)
                      ++++.|+. .|++++..+. .|.|+++++.
T Consensus        81 ~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~  109 (130)
T d1ycsb1          81 QVCKFLVE-SGAAVFAMTYSDMQTAADKCE  109 (130)
T ss_dssp             HHHHHHHH-TTCCTTCCCSSSCCCHHHHCC
T ss_pred             HHHHHHHH-cCCCcccccCCCCCCHHHHHH
Confidence            99976665 5889887764 5788876653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.8e-21  Score=115.39  Aligned_cols=114  Identities=24%  Similarity=0.318  Sum_probs=100.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+ .|+.+++++|++.+.++ +..+.  .|.+|++.++..++.++++.+++.+++. +.++..|.||||+|++.
T Consensus        37 ~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~  111 (156)
T d1bd8a_          37 KTALQVMM-FGSTAIALELLKQGASP-NVQDT--SGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             CCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred             Cccccccc-ccccccccccccccccc-ccccc--cccccccccccccccccccccccccccc-ccccCCCCeeecccccc
Confidence            47999887 48999999999999886 33332  4899999999999999999999999887 67799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLA  122 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~  122 (151)
                      |+.+++++|+ .+++ ++.+|.+|.|||++    ++.++++.|+.
T Consensus       112 ~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         112 GHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999888 5787 89999999999998    99999976654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.7e-20  Score=118.77  Aligned_cols=121  Identities=23%  Similarity=0.244  Sum_probs=105.0

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .++++.++..++.++++.|++.+... ...+.  .|.||||+|+..|+.++++.|++.+....+.+|..|.||||+|+..
T Consensus       106 ~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~--~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         106 VTCLHLAVGKKWFEVSQFLIENGASV-RIKDK--FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT--TSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccchhhhhhhhhhhcccc-cccCC--CCCCccchhhhcccccccccccccccccccccccccCCchhhhccc
Confidence            46889999999999999999998875 44443  4899999999999999999999998766678899999999999999


Q ss_pred             CCHHHHHHHHhh-ccccccccCCCCCCcccc-cCHHHHHHHHHhCCCC
Q 048410           82 SHTQMVLRLIDV-DRNLVRVQGREGVTPLHY-GNVDLLYKFLAACPES  127 (151)
Q Consensus        82 ~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~-~~~~~~~~ll~~~~~~  127 (151)
                      |+.+++++|++. |++ ++.+|..|.|||++ .+.++++.|+.. |+|
T Consensus       183 ~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~~~~~~~Ll~~-g~d  228 (229)
T d1ixva_         183 GHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNEQVKKFFLNN-VVD  228 (229)
T ss_dssp             TCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSCHHHHHHHHHH-CCC
T ss_pred             ccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhhHHHHHHHHHc-CCC
Confidence            999999999974 888 99999999999999 777888666664 554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=9.4e-23  Score=136.82  Aligned_cols=93  Identities=19%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcc--ccCCCCCCcHHHHHHh
Q 048410            3 HYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA--RKQNQYGFSPLHLALQ   80 (151)
Q Consensus         3 ~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~t~L~~a~~   80 (151)
                      ||||+||+.|+.++|++|++.|+++... +....|.||||+|+..|+.+++++|++.++...  +..+..+.||++.|+.
T Consensus       128 taL~~Aa~~G~~~~v~~Ll~~g~~~~~~-~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~  206 (346)
T d2ajaa1         128 QAFRLAAENGHLHVLNRLCELAPTEIMA-MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  206 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHH-HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCcccc-ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh
Confidence            6888888888888888888888765322 110126788888888888888888888776431  2223445566677777


Q ss_pred             cCCHHHHHHHHhhccc
Q 048410           81 NSHTQMVLRLIDVDRN   96 (151)
Q Consensus        81 ~~~~~~~~~ll~~~~~   96 (151)
                      .|+.+++++|++.|++
T Consensus       207 ~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         207 RGHHNVINFLLDCPVM  222 (346)
T ss_dssp             TCCHHHHHHHTTSHHH
T ss_pred             cCHHHHHHHHHhCCCC
Confidence            8888888888877654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=3.6e-20  Score=120.07  Aligned_cols=85  Identities=24%  Similarity=0.259  Sum_probs=73.2

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----c
Q 048410           37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----G  112 (151)
Q Consensus        37 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~  112 (151)
                      |.|+|++++..++.+++++++.......+.+|..|.||||+|+..|+.+++++|++.|++ ++.+|.+|.|||++    +
T Consensus       187 g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             CCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTT
T ss_pred             CCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcC
Confidence            567788888888888877777665555567899999999999999999999999999999 99999999999999    9


Q ss_pred             CHHHHHHHHH
Q 048410          113 NVDLLYKFLA  122 (151)
Q Consensus       113 ~~~~~~~ll~  122 (151)
                      +.++++.|++
T Consensus       266 ~~~iv~lL~~  275 (277)
T d2fo1e1         266 HHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHHH
Confidence            9999966653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.8e-20  Score=110.62  Aligned_cols=91  Identities=20%  Similarity=0.173  Sum_probs=81.6

Q ss_pred             CHHHHHHHHc---CCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHH
Q 048410            2 SHYVILAAQA---GNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLA   78 (151)
Q Consensus         2 ~~~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a   78 (151)
                      +||||.|++.   |..+++++|++.|+++ +.++.  .|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|
T Consensus        46 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~--~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A  121 (154)
T d1dcqa1          46 ETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTG--KGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIA  121 (154)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhh--hhccccccccccccccccccccccCccc-cccCCCCCCHHHHH
Confidence            4799999975   6789999999999986 55554  4999999999999999999999999988 67899999999999


Q ss_pred             HhcCCHHHHHHHHhhccc
Q 048410           79 LQNSHTQMVLRLIDVDRN   96 (151)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~   96 (151)
                      ++.|+.+++++|++.++.
T Consensus       122 ~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         122 KRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHhCCC
Confidence            999999999999997665

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.82  E-value=1.2e-22  Score=136.38  Aligned_cols=132  Identities=20%  Similarity=0.222  Sum_probs=98.0

Q ss_pred             CHHHHHHHHcCCHHHHHH---HHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcccc-CCCCCCcHHHH
Q 048410            2 SHYVILAAQAGNVDALYE---LIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK-QNQYGFSPLHL   77 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~---ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~t~L~~   77 (151)
                      .|+|+.|++.|+.++++.   |++.|+.+ +..+.  .|+||||+|+..|+.+++++|++.|++.... .+..|.||||+
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~--~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQA--ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CH--HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCC--CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHH
Confidence            479999999999887665   67888776 44443  3899999999999999999999999877322 23468999999


Q ss_pred             HHhcCCHHHHHHHHhhcccc--ccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccccCCC
Q 048410           78 ALQNSHTQMVLRLIDVDRNL--VRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTIYFPI  137 (151)
Q Consensus        78 a~~~~~~~~~~~ll~~~~~~--~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~~g~t  137 (151)
                      |+..|+.+++++|++.|+..  .+..+..+.||++.    |+.+++++|+. .|++.+..+..+.+
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHHHHHHHHHCTTT
T ss_pred             HHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHh-CCCCcchHHHHHHH
Confidence            99999999999999988762  22333456677775    89999966654 56666554444433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.1e-20  Score=119.44  Aligned_cols=126  Identities=19%  Similarity=0.162  Sum_probs=103.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhC-hhhhhhhcCCCCCCchHHHHHhc----CCHHHHHHHHHhCCCccccCCCCCCcHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWED-AYLLDQIDRVPFVDTPLHIAASM----GHVNFALEIMRLKPSFARKQNQYGFSPLH   76 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~-~~~~~~~~~~~~~~t~l~~a~~~----~~~~~~~~ll~~~~~~~~~~~~~~~t~L~   76 (151)
                      .||||.|++.|+.+++++|+++. .++ +..+.  .+.+++..+...    +..+++++|++.|++. +.++..|.||||
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~  224 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADV-NACDN--MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLI  224 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCT--TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCc-ccccC--CCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccc
Confidence            47999999999999999999874 444 44443  366666654433    3457899999999887 677899999999


Q ss_pred             HHHhcCCHHHHHHHHhh-ccccccccCCCCCCcccc----cCHHHHHHHHHhCCCCcccccc
Q 048410           77 LALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHY----GNVDLLYKFLAACPESILQVTI  133 (151)
Q Consensus        77 ~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~~~~~~~~~~  133 (151)
                      +|+..|+.+++++|+.. |++ ++.+|.+|.|||++    ++.+++++||+ .|++++.+|.
T Consensus       225 ~a~~~~~~~~v~~lL~~~g~d-in~~d~~G~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             hhhhcCcHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            99999999999999986 666 99999999999998    99999966554 6899998773

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.1e-19  Score=108.41  Aligned_cols=113  Identities=27%  Similarity=0.311  Sum_probs=100.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||+|+..++.+.++.++....... ....  .+.++++.++...+.++++++...+.+. ..++..|.||||+|+..
T Consensus        35 ~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~  110 (153)
T d1awcb_          35 TSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTK--VDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCT--TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             Ccccccccccccccccccccccccccc-cccc--ccccccccccccccceeeecccccCCcc-ccccccCchHHHhhhhc
Confidence            479999999999999999988877652 2222  3779999999999999999999998877 66799999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHH
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYK  119 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~  119 (151)
                      |+.+++++|++.|++ ++..|..|.|||++    ++.++++.
T Consensus       111 g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_         111 NHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             chhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            999999999999999 99999999999998    99999854

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.8e-20  Score=108.97  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=102.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhc
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQN   81 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~   81 (151)
                      .||||.|+ .|+.+++++|++.++++ ...+.  .+.++++.++..+..+.++.++..+... +..+..|.+|+++|+..
T Consensus        35 ~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~--~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~  109 (156)
T d1ihba_          35 RTALQVMK-LGNPEIARRLLLRGANP-DLKDR--TGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKE  109 (156)
T ss_dssp             CCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cccccccc-ccccccccccccccccc-ccccc--cCcccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            48999776 79999999999999886 44443  3889999999999999999999998877 67789999999999999


Q ss_pred             CCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHh
Q 048410           82 SHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAA  123 (151)
Q Consensus        82 ~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~  123 (151)
                      ++.+++++|+++++.+.+.++.+|.|||++    ++.+++++|++.
T Consensus       110 ~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         110 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999885588999999999998    999999776653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.3e-19  Score=111.10  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=104.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhChhhhhh---hcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHH
Q 048410            2 SHYVILAAQAGNVDALYELIWEDAYLLDQ---IDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLA   78 (151)
Q Consensus         2 ~~~l~~a~~~g~~~~v~~ll~~~~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a   78 (151)
                      .+||+.++..|+.++++.++..+......   ......|.||++.|+..++.+++++++..+.......+..|.||||+|
T Consensus        73 ~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          73 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccc
Confidence            47999999999999999999986543111   111124789999999999999999999999887666677899999999


Q ss_pred             HhcCCHHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHHHHhC
Q 048410           79 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKFLAAC  124 (151)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~ll~~~  124 (151)
                      ++.|+.+++++|++.|++ ++.+|.+|.|||++    ++.+++++|+...
T Consensus       153 ~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         153 VDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             cccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999 99999999999999    8999997776653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=4.9e-19  Score=115.59  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=73.4

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccccCHH
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVD  115 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~~~~~  115 (151)
                      .|.|||+.|+..|+.++++.|++.|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|||++...+
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e~  275 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED  275 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSG
T ss_pred             CCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHH
Confidence            4789999999999999999999999887 67799999999999999999999999999999 999999999999992224


Q ss_pred             HHHHH
Q 048410          116 LLYKF  120 (151)
Q Consensus       116 ~~~~l  120 (151)
                      ++..|
T Consensus       276 ~~~~L  280 (291)
T d1s70b_         276 ILGYL  280 (291)
T ss_dssp             GGHHH
T ss_pred             HHHHH
Confidence            44333

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.2e-18  Score=107.76  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=72.1

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCHHHHHHHHhhccccccccCCCCCCcccc----
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY----  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~----  111 (151)
                      .+.++++.|+..+...+++.+++.+... ..++..|.||||+|+..|+.+++++|++.|++ ++.+|.+|.|||++    
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSH
T ss_pred             chhhHHHHHHHhhhhhhhhhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhC
Confidence            3678999999999999999999988776 56789999999999999999999999999999 99999999999998    


Q ss_pred             cCHHHH
Q 048410          112 GNVDLL  117 (151)
Q Consensus       112 ~~~~~~  117 (151)
                      ++.+++
T Consensus       221 ~~~div  226 (228)
T d1k1aa_         221 RVIDIL  226 (228)
T ss_dssp             HHHHHH
T ss_pred             CCcccc
Confidence            555555

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=7.4e-18  Score=105.04  Aligned_cols=112  Identities=21%  Similarity=0.186  Sum_probs=95.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhChhhhhhhcCCCCCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCC
Q 048410            4 YVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSH   83 (151)
Q Consensus         4 ~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~   83 (151)
                      ..+.+...+.....+.|.+.+.++ +..+.  .|.||+++++..+...+++.+++.+.+. +..|..|.||||+|+..|+
T Consensus        93 ~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~--~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_          93 PLILAARLAIEGMVEDLITADADI-NAADN--SGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTCCT-TCBCT--TSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             cccccccccchhhhhhhhhhcccc-cccCC--CCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccH
Confidence            455666667777788888887765 44443  3899999999999999999999998887 6779999999999999999


Q ss_pred             HHHHHHHHhhccccccccCCCCCCcccc----cCHHHHHHH
Q 048410           84 TQMVLRLIDVDRNLVRVQGREGVTPLHY----GNVDLLYKF  120 (151)
Q Consensus        84 ~~~~~~ll~~~~~~~~~~~~~~~t~l~~----~~~~~~~~l  120 (151)
                      .+++++|++.|++ ++.+|..|.|||++    ++.+++++|
T Consensus       169 ~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         169 YEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999 99999999999998    999999543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=7.1e-18  Score=110.89  Aligned_cols=75  Identities=19%  Similarity=0.174  Sum_probs=59.2

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHhCCCccccCCCCCCcHHHHHHhcCCH---HHHHHHHhhccccccccCCCCCCcccc
Q 048410           36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHT---QMVLRLIDVDRNLVRVQGREGVTPLHY  111 (151)
Q Consensus        36 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~~t~l~~  111 (151)
                      .|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||.|+..++.   ..++.+++.....+...+..|.||+|.
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            4999999999999999999999999988 67899999999999987752   122333333222266778899999985