Citrus Sinensis ID: 048417
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.933 | 0.499 | 0.332 | 2e-47 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.843 | 0.305 | 0.342 | 6e-42 | |
| O22476 | 1196 | Protein BRASSINOSTEROID I | no | no | 0.874 | 0.331 | 0.309 | 2e-41 | |
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.944 | 0.354 | 0.298 | 4e-41 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.823 | 0.317 | 0.331 | 5e-41 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.843 | 0.305 | 0.335 | 7e-40 | |
| Q8L899 | 1207 | Systemin receptor SR160 O | N/A | no | 0.944 | 0.354 | 0.298 | 2e-39 | |
| Q9C7S5 | 1095 | Tyrosine-sulfated glycope | no | no | 0.913 | 0.378 | 0.279 | 8e-37 | |
| Q9ZWC8 | 1166 | Serine/threonine-protein | no | no | 0.896 | 0.348 | 0.279 | 2e-36 | |
| Q9SHI3 | 729 | Receptor-like protein 2 O | no | no | 0.885 | 0.550 | 0.298 | 7e-36 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 225/454 (49%), Gaps = 31/454 (6%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L L P + +L LD+S++ G IP S + LDLS N
Sbjct: 352 KLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTI-SKLVNLLHLDLSKNN 410
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSI--ALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
+ G++P +L + L NSFS + + ELD ++NS G I + IC
Sbjct: 411 LEGEVP--ACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMIC---- 464
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQ-NLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190
+L+ L LS N G +P C N+ ++ L+L +N F+G LP L SL +
Sbjct: 465 KLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVS 524
Query: 191 KNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKE 249
N L G SL NC AL ++V N++ + P+W+ E + VL LRSNKFY L
Sbjct: 525 HNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHR 583
Query: 250 LCDLAF--LQIVDLADNNLSGEVP-RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIA 306
+ F L+I+D++ NN SG +P N + M T+ + + +F YA
Sbjct: 584 HASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMT-EFWRYAD------ 636
Query: 307 TLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366
+ + +V KG + +ER R IDFS N +G IP + LK L+ +NLS N FT
Sbjct: 637 SYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTS 696
Query: 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFD 426
IP + + LE++D S N+LSG+IPQ +++L FL+++N S+N L G +P TQ Q
Sbjct: 697 VIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQK 756
Query: 427 ASSFSGN-------DLCRAPLSGNCSEHVSIPKD 453
SSF N D+CR +G + +P+D
Sbjct: 757 CSSFLDNPGLYGLEDICRD--TGALNPTSQLPED 788
|
Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 146/426 (34%), Positives = 220/426 (51%), Gaps = 44/426 (10%)
Query: 24 HLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LT 82
H P + K LN L L + ++G +P + Q+ +LDL+ NQ+ G IP+
Sbjct: 467 HFEGEIPPSIGRLKELNLLHLRQNELVGGLPASL-GNCHQLNILDLADNQLSGSIPSSFG 525
Query: 83 NAAQLEVLSLGSNSFSIALP--LIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQIL 139
LE L L +NS LP LIS L ++ S+N ++G+I H +C ++ L+
Sbjct: 526 FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLS----F 580
Query: 140 YLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH 199
++ N + E+P N QNL L L N+ TG +P +LG + L L + N L GTI
Sbjct: 581 DVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP 640
Query: 200 -SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQI 258
L C L +D+ N L IP W+ + S++ L L SN+F LP EL + L +
Sbjct: 641 LQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLV 699
Query: 259 VDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKG 318
+ L N+L+G +P+ I NL A+ +N L + G
Sbjct: 700 LSLDGNSLNGSIPQEIGNLGALNVLN-------------------LDKNQFSGSLPQAMG 740
Query: 319 REAK-YERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQS-VNLSNNFFTGRIPESVGTMR 376
+ +K YE + S+N+ +G+IP+E+ L+ LQS ++LS N FTG IP ++GT+
Sbjct: 741 KLSKLYE--------LRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLS 792
Query: 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGN-DL 435
LE++D S NQL+GE+P S+ +K L +LN+S NNL GK+ Q + A SF GN L
Sbjct: 793 KLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGL 850
Query: 436 CRAPLS 441
C +PLS
Sbjct: 851 CGSPLS 856
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 207/485 (42%), Gaps = 89/485 (18%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP----------------- 79
K L YL L+ + G IP+ + + LDLS N +G +P
Sbjct: 291 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 350
Query: 80 ---------NLTNAAQLEVLSLGSNSFSIALPL----ISSYLIELDFSNNSISGSIFHFI 126
L L+VL L N FS LP +S+ L+ LD S+N+ SG I +
Sbjct: 351 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 410
Query: 127 CYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL----- 181
C N N Q LYL N G++P N L+ L LS N +G +P SLGSL
Sbjct: 411 C--QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 468
Query: 182 -------------------ISLQSLHLRKNNLCGTIHS-LENCTALMTLDVGENELVENI 221
+L++L L N+L G I S L NCT L + + N L I
Sbjct: 469 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 528
Query: 222 PTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 281
P WI R + +L L +N F +P EL D L +DL N +G +P + +
Sbjct: 529 PKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 587
Query: 282 TMNSHAGKAIQY-------------------------QFLLYASRAPLIATLLEDAFVVM 316
N AGK Y Q ++R P T V
Sbjct: 588 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT-----SRVY 642
Query: 317 KGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR 376
G + + +D S N SG IP E+ ++ L +NL +N +G IP+ VG +R
Sbjct: 643 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 702
Query: 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGN-DL 435
L +D S N+L G IPQ+MS+L L ++LSNNNL+G IP Q ++F + F N L
Sbjct: 703 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 762
Query: 436 CRAPL 440
C PL
Sbjct: 763 CGYPL 767
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Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 146/489 (29%), Positives = 223/489 (45%), Gaps = 61/489 (12%)
Query: 10 IPPFQLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLD 68
+P L L LR +P+ L K + LDLSY+ G +P S + ++D
Sbjct: 300 LPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESL-GECSSLELVD 358
Query: 69 LSFNQIHGQIP--NLTNAAQLEVLSLGSNSFSIALPLISSYLIEL---DFSNNSISGSIF 123
+S+N G++P L+ + ++ + L N F LP S L++L D S+N+++G I
Sbjct: 359 ISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIP 418
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 183
IC + +N ++LYL N +G +PD N L+ LDLS N TG++P SLGSL
Sbjct: 419 SGIC--KDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSK 476
Query: 184 LQSLHLRKNNLCGTI-------------------------HSLENCTALMTLDVGENELV 218
L+ L L N L G I SL NCT L + + N+L
Sbjct: 477 LKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLS 536
Query: 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR 278
IP + R S + +L L +N +P EL + L +DL N L+G +P +
Sbjct: 537 GEIPASLG-RLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQS 595
Query: 279 AMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT-----LNLVRI- 332
+ + GK Y + LLE + R+ + +R N R+
Sbjct: 596 GNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGI----RQEQLDRISTRHPCNFTRVY 651
Query: 333 ----------------IDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR 376
+D S N G IP E+ + L +NL +N +G IP+ +G ++
Sbjct: 652 RGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLK 711
Query: 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLC 436
++ +D S N+ +G IP S++SL L ++LSNNNL+G IP S +F F+ N LC
Sbjct: 712 NVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNSLC 771
Query: 437 RAPLSGNCS 445
PL CS
Sbjct: 772 GYPLPIPCS 780
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Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 137/413 (33%), Positives = 212/413 (51%), Gaps = 40/413 (9%)
Query: 49 IIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALP---LIS 105
+ G IP+ S+ + + +LDLS NQ+ G+IP L +S+G N F+ +P
Sbjct: 396 LTGPIPSSI-SNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNC 454
Query: 106 SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165
S L L ++N+++G++ I +L K +IL +S N L G +P N ++L IL L
Sbjct: 455 SNLETLSVADNNLTGTLKPLI----GKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYL 510
Query: 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTW 224
+N FTG +P + +L LQ L + N+L G I + + L LD+ N+ IP
Sbjct: 511 HSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPAL 570
Query: 225 IRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTM 283
+ + L L+ NKF +P L L+ L D++DN L+G +P + +L+ M
Sbjct: 571 F-SKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNM--- 626
Query: 284 NSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGRE---------AKYERTLNLVR--- 331
Q L S L T+ ++ + +E R+L +
Sbjct: 627 ----------QLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVF 676
Query: 332 IIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390
+DFS+NN SG IP EV + ++ S+NLS N F+G IP+S G M L S+D S N L+G
Sbjct: 677 TLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTG 736
Query: 391 EIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGN-DLC--RAPL 440
EIP+S+++L L HL L++NNL G +P S ++ +AS GN DLC + PL
Sbjct: 737 EIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPL 789
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 219/426 (51%), Gaps = 44/426 (10%)
Query: 24 HLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LT 82
L PS + K L L L + ++G IP + Q+ V+DL+ NQ+ G IP+
Sbjct: 468 RLSGEIPSSIGRLKDLTRLHLRENELVGNIPASL-GNCHQMTVIDLADNQLSGSIPSSFG 526
Query: 83 NAAQLEVLSLGSNSFSIALP--LIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQIL 139
LE+ + +NS LP LI+ L ++FS+N +GSI +C ++ L+
Sbjct: 527 FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSI-SPLCGSSSYLS----F 581
Query: 140 YLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH 199
++ N +G++P NL L L N+FTG +P + G + L L + +N+L G I
Sbjct: 582 DVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIP 641
Query: 200 -SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQI 258
L C L +D+ N L IPTW+ + + L L SNKF LP E+ L +
Sbjct: 642 VELGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILT 700
Query: 259 VDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKG 318
+ L N+L+G +P+ I NL+A+ +N + PL +T+ G
Sbjct: 701 LFLDGNSLNGSIPQEIGNLQALNALNLEENQL----------SGPLPSTI---------G 741
Query: 319 REAK-YERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQS-VNLSNNFFTGRIPESVGTMR 376
+ +K +E + S+N +G+IP+E+ L+ LQS ++LS N FTGRIP ++ T+
Sbjct: 742 KLSKLFE--------LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLP 793
Query: 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGN-DL 435
LES+D S NQL GE+P + +K L +LNLS NNL GK+ Q + A +F GN L
Sbjct: 794 KLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGL 851
Query: 436 CRAPLS 441
C +PLS
Sbjct: 852 CGSPLS 857
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/489 (29%), Positives = 220/489 (44%), Gaps = 61/489 (12%)
Query: 10 IPPFQLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLD 68
+P L L LR +P+ L K + LDLSY+ G +P S + ++D
Sbjct: 300 LPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESL-GECSSLELVD 358
Query: 69 LSFNQIHGQIP--NLTNAAQLEVLSLGSNSFSIALPLISSYLIEL---DFSNNSISGSIF 123
+S N G++P L + ++ + L N F LP S L +L D S+N+++G I
Sbjct: 359 ISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIP 418
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 183
IC + +N ++LYL N +G +PD N L+ LDLS N TG++P SLGSL
Sbjct: 419 SGIC--KDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSK 476
Query: 184 LQSLHLRKNNLCGTI-------------------------HSLENCTALMTLDVGENELV 218
L+ L L N L G I SL NCT L + + N+L
Sbjct: 477 LKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLS 536
Query: 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR 278
IP + R S + +L L +N +P EL + L +DL N L+G +P +
Sbjct: 537 GEIPASLG-RLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQS 595
Query: 279 AMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER-----TLNLVRI- 332
+ + GK Y + LLE + R+ + +R N R+
Sbjct: 596 GNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGI----RQEQLDRISTRHPCNFTRVY 651
Query: 333 ----------------IDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR 376
+D S N G IP E+ + L +NL +N +G IP+ +G ++
Sbjct: 652 RGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLK 711
Query: 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLC 436
++ +D S N+ +G IP S++SL L ++LSNNNL+G IP S +F F+ N LC
Sbjct: 712 NVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNSLC 771
Query: 437 RAPLSGNCS 445
PL CS
Sbjct: 772 GYPLPLPCS 780
|
Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development. Solanum peruvianum (taxid: 4082) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 131/468 (27%), Positives = 214/468 (45%), Gaps = 54/468 (11%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L+ L +L P +Y+ L L L + + G I N + +++ +L+L N
Sbjct: 248 RLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGI-TRLTKLTLLELYSNH 306
Query: 74 IHGQIP-NLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYR 129
I G+IP ++ ++L L L N+ ++P+ + L++L+ N + G++ R
Sbjct: 307 IEGEIPKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSR 366
Query: 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL 189
L+ IL L N GE P + + + + + NK TG + + L SL
Sbjct: 367 FQSLS---ILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTF 423
Query: 190 RKN---NLCGTIHSLENCTALMTL-----------------------------DVGENEL 217
N NL G + L+ C L TL +G L
Sbjct: 424 SDNKMTNLTGALSILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGACRL 483
Query: 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNL 277
IP W+ + R+ V+ L N+F +P L L L +DL+DN L+GE+P+ + L
Sbjct: 484 TGEIPAWLI-KLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFLTGELPKELFQL 542
Query: 278 RAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSK 337
RA+++ ++ Y L + T +Y + +L I +
Sbjct: 543 RALMSQKAYDATERNYLELPVFVNPNNVTT------------NQQYNQLSSLPPTIYIKR 590
Query: 338 NNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMS 397
NN +G IP+EV LKVL + L N F+G IP+ + + +LE +D S N LSG IP S++
Sbjct: 591 NNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLT 650
Query: 398 SLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLSGNC 444
L FL++ N++NN L+G IP+ TQ +F ++F GN LC L +C
Sbjct: 651 GLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSC 698
|
Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 146/522 (27%), Positives = 224/522 (42%), Gaps = 116/522 (22%)
Query: 26 GSRFPSWLYSQKHLNYLDLSYSGIIGTIPN-IFWSSASQIYVLDLSFNQIHGQIPNLTN- 83
G +FP L + K L L++S + + G IPN +W S + L L+ N++ G+IP +
Sbjct: 240 GDKFPITLPNCKFLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSL 299
Query: 84 -AAQLEVLSLGSNSFSIALP---LISSYLIELDFSNNSISGSIFHFICYRANELNKWQIL 139
L +L L N+FS LP +L L+ NN +SG + + +++ L
Sbjct: 300 LCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTV---VSKITGITYL 356
Query: 140 YLSGNFLQGELPDCWMNYQNLMILDLSNNKFT---------------------------G 172
Y++ N + G +P N NL +LDLS+N FT G
Sbjct: 357 YVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSG 416
Query: 173 NLPISLGSLISLQSLHLR------------------------KNNLCGTI---------- 198
+P+ LG SL+++ L NNL GTI
Sbjct: 417 TVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGN 476
Query: 199 ----------------HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242
S+ CT ++ + + N L IP+ I S++ +L L +N
Sbjct: 477 LETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGI-GNLSKLAILQLGNNSL 535
Query: 243 YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302
+P++L + L +DL NNL+G++P + + +V S +GK Q+ F+
Sbjct: 536 SGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGK--QFAFVRNEGGT 593
Query: 303 PLIATLLEDAFVVMKGREAKYERTLNLV------RI-----------------IDFSKNN 339
V +G A+ L +V RI D S N
Sbjct: 594 DCRGA---GGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNA 650
Query: 340 FSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSL 399
SG IP N+ LQ +NL +N TG IP+S G ++++ +D S N L G +P S+ SL
Sbjct: 651 VSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSL 710
Query: 400 KFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPL 440
FL+ L++SNNNLTG IP QL +F S ++ N LC PL
Sbjct: 711 SFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL 752
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 217/456 (47%), Gaps = 55/456 (12%)
Query: 1 MTLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSS 60
+T K+++N +L +L L HL P + + L L L + I GT+P + ++
Sbjct: 281 LTGKIDNNITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVP-LSLAN 339
Query: 61 ASQIYVLDLSFNQIHGQIPNL--TNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSI 118
+++ L+L NQ+ G + L + L+VL LG+NSF+ ALP + FS S+
Sbjct: 340 CTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALP-------DKIFSCKSL 392
Query: 119 SGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT---GNLP 175
+ F +GN L GE+ + ++L + LS+NK T G L
Sbjct: 393 TAIRF------------------AGNKLTGEISPQVLELESLSFMGLSDNKLTNITGALS 434
Query: 176 ISLGSLISLQSLHLRKNNLCGTIHSLENCTA------LMTLDVGENELVENIPTWIRERF 229
I G L +L L KN T+ S E+ + L VG L IP W+
Sbjct: 435 ILQGCR-KLSTLILAKNFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLIN-L 492
Query: 230 SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289
+++ V+ L N+F +P L L L +DL+DN L+GE+P+ + LRA+++
Sbjct: 493 NKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLLTGELPKELFQLRALMSQKITENN 552
Query: 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT 349
++ L + +Y + + I +NN +G IP+EV
Sbjct: 553 YLELPIFLNPNNVT---------------TNQQYNKLYSFPPTIYIRRNNLTGSIPVEVG 597
Query: 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409
LKVL + L N +G IP+ + + +LE +D S N LSG IP S+++L FL++ N++N
Sbjct: 598 QLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVAN 657
Query: 410 NNLTGKIPSSTQLQSFDASSFSGND-LCRAPLSGNC 444
N+L G IPS Q +F ++F GN LC L +C
Sbjct: 658 NSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSC 693
|
Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| 209970607 | 1045 | M18S-3Ap [Malus floribunda] | 0.982 | 0.425 | 0.512 | 1e-121 | |
| 209970618 | 967 | M18-S3Bp [Malus floribunda] | 0.973 | 0.456 | 0.512 | 1e-120 | |
| 350284739 | 978 | receptor-like protein [Malus x domestica | 0.973 | 0.450 | 0.512 | 1e-118 | |
| 350284741 | 982 | receptor-like protein [Malus x domestica | 0.982 | 0.453 | 0.511 | 1e-118 | |
| 209970625 | 974 | HB09p [Malus floribunda] | 0.966 | 0.449 | 0.507 | 1e-117 | |
| 255543977 | 1075 | serine/threonine-protein kinase bri1, pu | 0.973 | 0.410 | 0.495 | 1e-117 | |
| 14330716 | 980 | HcrVf2 protein [Malus floribunda] gi|350 | 0.973 | 0.45 | 0.503 | 1e-115 | |
| 350284751 | 980 | receptor-like protein [Malus baccata] | 0.973 | 0.45 | 0.503 | 1e-115 | |
| 350284749 | 980 | receptor-like protein [Malus baccata] | 0.973 | 0.45 | 0.503 | 1e-115 | |
| 209970612 | 977 | HB04p [Malus floribunda] | 0.966 | 0.448 | 0.504 | 1e-115 |
| >gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/451 (51%), Positives = 302/451 (66%), Gaps = 6/451 (1%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + +W+PPFQL L L HLG +P WL +Q L L LS +GI T+P FW+
Sbjct: 532 TLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLSCTGISSTVPTWFWNLT 591
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
S++ L+LS NQ++GQI N+ A + V+ L SN F+ ALP++ + L LD SN+S SGS
Sbjct: 592 SKVRYLNLSHNQLYGQIQNIV-AGPMSVVDLSSNHFTGALPIVPTSLFWLDLSNSSFSGS 650
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R +E + L+L N L G++PDCWM++Q L L+L NN TGN+P+S+G L
Sbjct: 651 VFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNLTGNVPMSMGYL 710
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L+SLHLR N+L G + HSL+NCT L +D+GEN +IP WI + S + +L LRSN
Sbjct: 711 DWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQILNLRSN 770
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
KF +P E+C L LQI+DLA N LSG +PRC HNL AM + ++ +L
Sbjct: 771 KFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADFSESRDASVY--VILNGI 828
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
PL T A +V KGRE +Y + L V+ +D S N G+IP E+T+L L+S+NLS
Sbjct: 829 SVPLSVT--AKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNLS 886
Query: 361 NNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
NN FTGRIP +G M LES+DFS+NQL GEIPQSM++L FL+HLNLSNNNLTG+IP ST
Sbjct: 887 NNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNNLTGRIPKST 946
Query: 421 QLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
QLQS D SSF GN+LC APL+ NCSE+ IP
Sbjct: 947 QLQSLDQSSFVGNELCGAPLNKNCSENGVIP 977
|
Source: Malus floribunda Species: Malus floribunda Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|209970618|gb|ACJ03070.1| M18-S3Bp [Malus floribunda] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/451 (51%), Positives = 300/451 (66%), Gaps = 10/451 (2%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + +W+PPFQL L L HLG +P WL +Q L L LS +GI TIP FW+
Sbjct: 458 TLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLT 517
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
SQ+ L+LS NQ++GQI N+ A V+ LGSN F+ ALP++++ L LD SN+S SGS
Sbjct: 518 SQVDYLNLSHNQLYGQIQNIFVGAFPSVVDLGSNQFTGALPIVATSLFWLDLSNSSFSGS 577
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R +E + +IL+L NFL G++PDCWM++Q L L+L NN TGN+P+S+G L
Sbjct: 578 VFHFFCDRPDEPKQLEILHLGNNFLTGKVPDCWMSWQYLGFLNLENNNLTGNVPMSMGYL 637
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L+SLHLR N+L G + HSL+NCT+L +D+ EN +IP WI + S + VLILRSN
Sbjct: 638 QDLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLHVLILRSN 697
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
KF +P E+C L LQI+DLA N LSG +PRC HNL A+ + I
Sbjct: 698 KFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALANFSESFSPRI--------- 748
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
+ + E+A +V KG E +Y + L + +D S N G+IP E+T L LQS+NLS
Sbjct: 749 FGSVNGEVWENAILVTKGTEMEYSKILGFAKGMDLSCNFMYGEIPKELTGLLALQSLNLS 808
Query: 361 NNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
NN FTGRIP +G M LES+DFS+NQL GEIP SM++L FL+HLNLS NNLTG+IP ST
Sbjct: 809 NNRFTGRIPSKIGDMAKLESVDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKST 868
Query: 421 QLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
QLQS D SSF GN+LC APL+ NCSE+ IP
Sbjct: 869 QLQSLDQSSFLGNELCGAPLNKNCSENGVIP 899
|
Source: Malus floribunda Species: Malus floribunda Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/451 (51%), Positives = 301/451 (66%), Gaps = 10/451 (2%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + +W+PPFQL L L HLG ++P WL +Q L L LS +GI TIP FW+
Sbjct: 469 TLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLT 528
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
SQ+ L+LS NQ++GQI N+ A + L SN F+ ALP++ + L+ LD SN+S SGS
Sbjct: 529 SQVEYLNLSRNQLYGQIQNIV-AVPFSTVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGS 587
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R +E K IL+L N L G++PDCWM++Q+L L+L NN TGN+P+S+G L
Sbjct: 588 VFHFFCDRPDEPRKLGILHLGNNSLTGKVPDCWMSWQSLSFLNLENNNLTGNVPMSMGYL 647
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
+ +QSL+LR N+L G + HSL+NCT+L +D+ EN +IPTWI + S + VLILRSN
Sbjct: 648 LYIQSLYLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPTWIGKSLSLLNVLILRSN 707
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
KF +P E+C L LQI+DLA N LSG +PRC HNL A+ + F +
Sbjct: 708 KFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALANFSE--------SFSPTSY 759
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
+ + L E+A +V KG E +Y L V+ +D S N G+IP E+T L LQS+NLS
Sbjct: 760 WGEVASGLTENAILVTKGIEMEYSTILGFVKGMDLSCNFMYGEIPEELTGLLALQSLNLS 819
Query: 361 NNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
NN FTGRIP +G M LES+DFS+NQL GEIP SM+ L FL+HLNLS NNLTG+IP ST
Sbjct: 820 NNRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPEST 879
Query: 421 QLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
QLQS D SSF GN+LC APL+ NCSE+ IP
Sbjct: 880 QLQSLDQSSFVGNELCGAPLNKNCSENGVIP 910
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284741|gb|AEQ27742.1| receptor-like protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/452 (51%), Positives = 299/452 (66%), Gaps = 7/452 (1%)
Query: 1 MTLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSS 60
+TLK + W+PPFQL +L L LG +P WL Q L L LS + I TIP FW+
Sbjct: 469 LTLKTSRGWLPPFQLESLQLDSWRLGPEWPMWLQKQTQLKKLSLSGTRISSTIPTWFWNL 528
Query: 61 ASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISG 120
Q+ L+LS NQ++G+I N+ AA + V LGSN F+ ALP++ + L LD SN+S SG
Sbjct: 529 TFQLDYLNLSHNQLYGEIQNIV-AAPVSVADLGSNQFTGALPIVPTSLDRLDLSNSSFSG 587
Query: 121 SIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS 180
S+FHF C R +E + IL+L N L G++PDCWMN+ +L L L NN TGN+P+S+G
Sbjct: 588 SVFHFFCGRRDEPYQLSILHLENNHLTGKVPDCWMNWPSLGFLHLENNNLTGNVPMSMGY 647
Query: 181 LISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRS 239
L++LQSLHLR N+L G + HSLENCT L +D+ N V +IP W+ + S + VL LRS
Sbjct: 648 LLNLQSLHLRNNHLYGELPHSLENCTMLSVVDLSGNGFVGSIPIWMGKSLSELQVLNLRS 707
Query: 240 NKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYA 299
N+F +P E+C L LQI+DLA N LSG +PRC HNL AM ++ + Q
Sbjct: 708 NEFEGDIPSEICYLKSLQILDLARNKLSGTIPRCFHNLSAMADLSESVWPTMFSQ----- 762
Query: 300 SRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNL 359
S + T LE+A +V KGRE +Y + L V+ +D S N G+IP E+T+L LQS+NL
Sbjct: 763 SDGIMEFTNLENAVLVTKGREMEYSKILEFVKFMDLSCNFMYGEIPEELTDLLALQSLNL 822
Query: 360 SNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419
SNN FTGRIP +G M LES+DFS+NQL GEIPQSM++L FL+HLNLS NNLTG+IP S
Sbjct: 823 SNNRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSYNNLTGRIPES 882
Query: 420 TQLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
TQLQ D SSF GN+LC APL NCS + IP
Sbjct: 883 TQLQLLDQSSFVGNELCGAPLHKNCSPNGVIP 914
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|209970625|gb|ACJ03073.1| HB09p [Malus floribunda] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/451 (50%), Positives = 300/451 (66%), Gaps = 13/451 (2%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + NW+PPFQL +L L HLG +P WL +Q L L LS +GI TIP FW+
Sbjct: 468 TLKTSRNWLPPFQLESLQLDSWHLGPEWPMWLRTQTQLTDLSLSGTGISSTIPTWFWNLT 527
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
Q+ L+LS NQ++G+I N+ AA V+ LGSN F+ ALP++ + L LD SN+S SGS
Sbjct: 528 FQLGYLNLSHNQLYGEIQNIV-AAPYSVVDLGSNKFTGALPIVPTSLAWLDLSNSSFSGS 586
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R E + IL+L N L G++PDCW ++Q L L+L NN TGN+P+S+ L
Sbjct: 587 VFHFFCDRPEEAKQLSILHLGNNLLTGKVPDCWRSWQGLAALNLENNLLTGNVPMSMRYL 646
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L+SLHLR N+L G + HSL+NC++L +D+G N V +IP WI + SR+ VL LRSN
Sbjct: 647 QQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSIPIWIGKSLSRLNVLNLRSN 706
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
+F +P E+C L LQI+DLA N LSG +PRC HNL AM T S + +I ++
Sbjct: 707 EFEGDIPSEICYLKNLQILDLARNKLSGTIPRCFHNLSAMATF-SESFSSITFR------ 759
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
T +E + VV KGRE +Y L V+ +D S N G+IP E+T+L LQS+NLS
Sbjct: 760 ----TGTSVEASIVVTKGREVEYTEILGFVKGMDLSCNFMYGEIPEELTDLLALQSLNLS 815
Query: 361 NNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
+N FTGR+P +G M LES+DFS+NQL GEIP SM++L FL+HLNLS NNLTG+IP ST
Sbjct: 816 HNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKST 875
Query: 421 QLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
QLQS D SSF GN+LC APL+ NC + IP
Sbjct: 876 QLQSLDQSSFVGNELCGAPLNKNCRANGVIP 906
|
Source: Malus floribunda Species: Malus floribunda Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/450 (49%), Positives = 297/450 (66%), Gaps = 9/450 (2%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
L+V NW PPFQL L LR +G +FP+WL+S ++L LDLS SGI TIP FW +
Sbjct: 560 VLRVGSNWTPPFQLHYLSLRSWKIGPQFPAWLHSLRYLEILDLSNSGISSTIPVWFWDMS 619
Query: 62 SQIYVLDLSFNQIHGQIPNL---TNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSI 118
S +LS NQIHG IPN+ +N ++ + + SN+F +P SS L LD S+NS
Sbjct: 620 SNFAYANLSHNQIHGVIPNVPVVSNDYRITMFDMSSNNFRGPVPYFSSNLSALDLSSNSF 679
Query: 119 SGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISL 178
+GSI +F+CY+ E+ K ++L L GN L GE+PDCW+++Q+L ++LSNNKFTGN+P S+
Sbjct: 680 TGSIINFLCYKMQEVKKMEVLNLGGNLLSGEIPDCWLSWQSLTAINLSNNKFTGNIPKSI 739
Query: 179 GSLISLQSLHLRKNNLCGTIH-SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237
G+L L+S+H N+L G I S++NC L TLD N+LV IP+WI + +++LIL
Sbjct: 740 GTLSFLESVHFANNDLSGDIPLSIQNCRKLFTLDFSGNKLVGKIPSWIGKSIPDMIILIL 799
Query: 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL 297
R NK + +P+E+C +A LQI+DLADNN S +P C N MV +N G Q
Sbjct: 800 RGNKLHGQIPEEICRMASLQILDLADNNFSSMIPSCFSNFSGMVKVNDSFGSLTFDQ--- 856
Query: 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSV 357
S L++ A +V+KGR A+Y L V+ ID S NN SG+IP+ +T+L LQS+
Sbjct: 857 --SNVGPSPILIDSAILVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQSL 914
Query: 358 NLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP 417
+ S N TGRIP+ +G M+SLESIDFS N L GEIP+S+SSL FL+HLNLSNN LTGKIP
Sbjct: 915 SFSQNSLTGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKIP 974
Query: 418 SSTQLQSFDASSFSGNDLCRAPLSGNCSEH 447
S TQL+ FD SSF NDLC PL NCS+
Sbjct: 975 SGTQLRGFDPSSFMDNDLCGPPLPLNCSKE 1004
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14330716|emb|CAC40826.1| HcrVf2 protein [Malus floribunda] gi|350284757|gb|AEQ27750.1| receptor-like protein [Malus micromalus] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/451 (50%), Positives = 295/451 (65%), Gaps = 10/451 (2%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + +W+PPFQL L L HLG +P WL +Q L L LS +GI TIP FW+
Sbjct: 471 TLKTSRDWVPPFQLEILKLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLT 530
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
+ L+LS NQ++GQI N+ A + L SN F+ ALP++ + L+ LD SN+S SGS
Sbjct: 531 FHVQYLNLSHNQLYGQIQNIV-AGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGS 589
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R +E + IL L NFL G++PDCWM++ +L L+L NN TGN+P+S+G L
Sbjct: 590 VFHFFCDRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYL 649
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L+SLHLR N+L G + HSL+NCT+L +D+ EN +IP WI + S + VL LRSN
Sbjct: 650 DWLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSN 709
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
KF +P E+C L LQI+DLA N LSG +PRC HNL AM + F +
Sbjct: 710 KFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSAMANFSQ--------SFSPTSF 761
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
+ + L E+A +V KG E +Y + L V+ +D S N G+IP E+T L LQ +NLS
Sbjct: 762 WGMVASGLTENAILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLS 821
Query: 361 NNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
NN FTGRIP +G+M LES+DFS+NQL GEIP SM+ L FL+HLNLS NNLTG+IP ST
Sbjct: 822 NNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPEST 881
Query: 421 QLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
QLQS D SSF GN+LC APL+ NCSE+ IP
Sbjct: 882 QLQSLDQSSFVGNELCGAPLNKNCSENGVIP 912
|
Source: Malus floribunda Species: Malus floribunda Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284751|gb|AEQ27747.1| receptor-like protein [Malus baccata] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/451 (50%), Positives = 295/451 (65%), Gaps = 10/451 (2%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + +W+PPFQL L L HLG +P WL +Q L L LS +GI TIP FW+
Sbjct: 471 TLKTSRDWVPPFQLEILKLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLT 530
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
+ L+LS NQ++GQI N+ A + L SN F+ ALP++ + L+ LD SN+S SGS
Sbjct: 531 FHVQYLNLSHNQLYGQIQNIV-AGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGS 589
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R +E + IL L NFL G++PDCWM++ +L L+L NN TGN+P+S+G L
Sbjct: 590 VFHFFCDRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYL 649
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L+SLHLR N+L G + HSL+NCT+L +D+ EN +IP WI + S + VL LRSN
Sbjct: 650 DWLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSN 709
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
KF +P E+C L LQI+DLA N LSG +PRC HNL AM + F +
Sbjct: 710 KFEGDIPNEVCYLKSLQILDLAHNELSGMIPRCFHNLSAMANFSQ--------SFSPTSF 761
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
+ + L E+A +V KG E +Y + L V+ +D S N G+IP E+T L LQ +NLS
Sbjct: 762 WGMVASGLTENAILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLS 821
Query: 361 NNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
NN FTGRIP +G+M LES+DFS+NQL GEIP SM+ L FL+HLNLS NNLTG+IP ST
Sbjct: 822 NNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPEST 881
Query: 421 QLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
QLQS D SSF GN+LC APL+ NCSE+ IP
Sbjct: 882 QLQSLDQSSFVGNELCGAPLNKNCSENGVIP 912
|
Source: Malus baccata Species: Malus baccata Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284749|gb|AEQ27746.1| receptor-like protein [Malus baccata] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/451 (50%), Positives = 295/451 (65%), Gaps = 10/451 (2%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + +W+PPFQL L L HLG +P WL +Q L L LS +GI TIP FW+
Sbjct: 471 TLKTSRDWVPPFQLEILKLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLT 530
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
+ L+LS NQ++GQI N+ A + L SN F+ ALP++ + L+ LD SN+S SGS
Sbjct: 531 FHVQYLNLSHNQLYGQIQNIV-AGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGS 589
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R +E + IL L NFL G++PDCWM++ +L L+L NN TGN+P+S+G L
Sbjct: 590 VFHFFCDRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYL 649
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L+SLHLR N+L G + HSL+NCT+L +D+ EN +IP WI + S + VL LRSN
Sbjct: 650 DWLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSN 709
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
KF +P E+C L LQI+DLA N LSG +PRC HNL AM + F +
Sbjct: 710 KFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSAMANFSQ--------SFSPTSF 761
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
+ + L E+A +V KG E +Y + L V+ +D S N G+IP E+T L LQ +NLS
Sbjct: 762 WGMVASGLTENAILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLS 821
Query: 361 NNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
NN FTGRIP +G+M LES+DFS+NQL GEIP SM+ L FL+HLNLS NNLTG+IP ST
Sbjct: 822 NNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPEST 881
Query: 421 QLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
QLQS D SSF GN+LC APL+ NCSE+ IP
Sbjct: 882 QLQSLDQSSFVGNELCGAPLNKNCSENGVIP 912
|
Source: Malus baccata Species: Malus baccata Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|209970612|gb|ACJ03068.1| HB04p [Malus floribunda] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/454 (50%), Positives = 301/454 (66%), Gaps = 16/454 (3%)
Query: 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA 61
TLK + +W+PPFQL +L L HLG ++P WL +Q L L LS +GI TIP FW+
Sbjct: 468 TLKTSQDWLPPFQLESLLLDSWHLGPKWPMWLQTQTQLTDLSLSDTGISSTIPTWFWNLT 527
Query: 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGS 121
Q+ L+LS NQ++G+I N+ A V+ LGSN F+ ALP++ + L LD SN+S SGS
Sbjct: 528 FQVQYLNLSHNQLYGEIQNIV-AFPDSVVDLGSNQFTGALPIVPTTLYWLDLSNSSFSGS 586
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
+FHF C R ++ IL+L N L G++PDCWMN+ +L L+L NN TGN+P+S+G L
Sbjct: 587 VFHFFCGRRDKPYTLDILHLGNNLLTGKVPDCWMNWPSLGFLNLENNYLTGNVPMSMGYL 646
Query: 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
LQSLHLR N+L G + HSL+NC +L +D+G N V +IP W+ + S + VL LRSN
Sbjct: 647 HKLQSLHLRNNHLYGELPHSLQNCASLSVVDLGGNGFVGSIPIWMVKSLSGLHVLNLRSN 706
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN---SHAGKAIQYQFLL 297
KF +P E+C L LQI+DLA N LSG +PRC HNL AM + S + ++ Y+F
Sbjct: 707 KFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSAMADFSESFSLSNFSVLYEF-- 764
Query: 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSV 357
+ E+A +V KG E +Y + L V+ ID S N G+IP E+T+L LQS+
Sbjct: 765 ---------GVPENAILVTKGIEMEYRKILGFVKGIDLSCNFMYGEIPEELTSLLALQSL 815
Query: 358 NLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP 417
NLSNN FT RIP +G M LES+DFS+NQL GEIP SM++L FL+HLNLS NNLTG+IP
Sbjct: 816 NLSNNRFTRRIPSKIGNMARLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIP 875
Query: 418 SSTQLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
STQLQS D SSF GN+LC APL+ NCS + IP
Sbjct: 876 ESTQLQSLDQSSFIGNELCGAPLNKNCSANGVIP 909
|
Source: Malus floribunda Species: Malus floribunda Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| TAIR|locus:2137296 | 811 | RLP46 "receptor like protein 4 | 0.949 | 0.530 | 0.313 | 1.1e-48 | |
| TAIR|locus:2173777 | 792 | RLP54 "receptor like protein 5 | 0.938 | 0.536 | 0.311 | 1.2e-47 | |
| TAIR|locus:2046397 | 589 | RLP22 "receptor like protein 2 | 0.920 | 0.707 | 0.336 | 5.4e-47 | |
| TAIR|locus:2087253 | 884 | RLP39 "AT3G24900" [Arabidopsis | 0.935 | 0.479 | 0.328 | 2.7e-46 | |
| TAIR|locus:2046515 | 864 | RLP24 "receptor like protein 2 | 0.942 | 0.494 | 0.32 | 3.2e-46 | |
| TAIR|locus:2046357 | 890 | RLP23 "receptor like protein 2 | 0.938 | 0.477 | 0.325 | 7.6e-46 | |
| TAIR|locus:2040035 | 671 | RLP20 "receptor like protein 2 | 0.966 | 0.652 | 0.309 | 1e-45 | |
| TAIR|locus:2094603 | 835 | RLP37 "receptor like protein 3 | 0.942 | 0.511 | 0.309 | 3.4e-45 | |
| TAIR|locus:2086979 | 890 | RLP42 "receptor like protein 4 | 0.935 | 0.476 | 0.319 | 3.4e-45 | |
| TAIR|locus:2119430 | 741 | RLP47 "receptor like protein 4 | 0.951 | 0.581 | 0.311 | 5.9e-45 |
| TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 144/459 (31%), Positives = 229/459 (49%)
Query: 6 NDNWI-PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQI 64
N+ ++ P F+L L LR C L P WL +Q L YLDLS + + G P W + +I
Sbjct: 317 NNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPK--WLADLKI 374
Query: 65 YVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSIALP--LISSYLIELDFSNNSISGS 121
+ LS N++ G +P NL L L L N+FS +P + S ++ L S N+ SGS
Sbjct: 375 RNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGS 434
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXXXXXX 181
+ I ++ ++L LS N L GE P + L LD+S+N+F+G+
Sbjct: 435 VPKSI----TKIPFLKLLDLSKNRLSGEFPR-FRPESYLEWLDISSNEFSGDVPAYFGGS 489
Query: 182 XXXXXXXXRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
+NN G + N + L+ LD+ +N++ + + I + S + VL LR+N
Sbjct: 490 TSMLLMS--QNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNN 547
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
+P+ + +L L+++DL++NNL G +P + NL M+ + I+ F Y
Sbjct: 548 SLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTD 607
Query: 301 RAPLIATLLE----DAF-VVMKGREAK---YERTLNLVRIIDFSKNNFSGKIPLEVTNLK 352
P I L+E D F +V+ + +K ++R L ++D SKN G+IP + NLK
Sbjct: 608 -IPNIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLK 666
Query: 353 VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXX 412
L+ +NLSNN F+G IP+S G + +ES+D S N L+GEIP+++
Sbjct: 667 SLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKL 726
Query: 413 TGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
G+IP S QL + + N+ SG C + +P
Sbjct: 727 KGRIPESPQLDRLNNPNIYANN------SGICGMQIQVP 759
|
|
| TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 139/446 (31%), Positives = 220/446 (49%)
Query: 15 LATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYV-LDL-SFN 72
L L L C++ + FP ++ + L +LD+S + I G +P + W+ S ++V L SF+
Sbjct: 305 LTHLDLSSCNI-TEFPMFIKDLQRLWWLDISNNRIKGKVPELLWTLPSMLHVNLSRNSFD 363
Query: 73 QIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANE 132
+ G P + + + L L SN+F + P+I Y+ + SNN +G I C R
Sbjct: 364 SLEGT-PKIILNSSISELDLSSNAFKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRY-- 420
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQ-NLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRK 191
+ +L LS N G +P C N L L LSNN TG
Sbjct: 421 --RLSLLDLSNNNFSGTIPRCLTNVSLGLEALKLSNNSLTGRLPDIEDRLVLLDVGH--- 475
Query: 192 NNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250
N + G + SL NCT L L+V N + + P W++ +R+ +++LRSN+F+ +
Sbjct: 476 NQISGKLPRSLVNCTTLKFLNVEGNHINDTFPFWLKA-LTRLEIIVLRSNRFHGPISSPE 534
Query: 251 CDLAF--LQIVDLADNNLSGEVPR-CIHNLRAMVTMNSHAGKAIQYQFLLYAS-RAPLIA 306
L+F L+I+D++ N+ +G +P+ N A + + +Y ++ PL +
Sbjct: 535 VSLSFTALRIIDISRNSFNGSLPQNYFANWSAPLVNTPQGYRWPEYTGDEHSKYETPLWS 594
Query: 307 TLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366
+ +KGR + + + IDFS N+F G+IP + +LK L ++LSNN FTG
Sbjct: 595 --YPSIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTG 652
Query: 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFD 426
RIP S+ ++ LES+D S N++SG IPQ + TG+IP STQ+
Sbjct: 653 RIPSSLAKLKQLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQP 712
Query: 427 ASSFSGN-DLCRAPLSGNCSEHVSIP 451
SSF GN +LC PL +C +P
Sbjct: 713 KSSFEGNINLCGLPLQESCLRGNGVP 738
|
|
| TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 149/443 (33%), Positives = 211/443 (47%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLS- 70
P + L L C++ S FP +L S K L YLDLS + I G +P+ WS + LDLS
Sbjct: 98 PKNMEILLLSGCNI-SEFPRFLKSLKKLWYLDLSSNRIKGNVPDWIWS-LPLLVSLDLSN 155
Query: 71 --FNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICY 128
F +G + ++ + ++VL + NSF + P +I L NNS +G I +C
Sbjct: 156 NSFTGFNGSLDHVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAWNNSFTGDIPLSVCN 215
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXX 188
R + L+ +L LS N G +P C N+ I++L NK GN
Sbjct: 216 RTS-LD---VLDLSYNNFTGSIPPCMGNFT---IVNLRKNKLEGNIPDEFYSGALTQTLD 268
Query: 189 XRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL- 246
N L G + SL NC+ + L V N + ++ P W++ + VL LRSN F+ +
Sbjct: 269 VGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSFPLWLKA-LPNLKVLTLRSNSFHGPMS 327
Query: 247 -PKELCDLAF--LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP 303
P + LAF LQI++++ N +G +P N A ++ S K + LY
Sbjct: 328 PPDDQSSLAFPKLQILEISHNRFTGSLPT---NYFANWSVKSL--KMYDEE-RLYMGDYS 381
Query: 304 LIATLLEDAFVVM-KGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN 362
+ ED + KG + + L IDFS N G+IP + LK L ++NLSNN
Sbjct: 382 SDRFVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNN 441
Query: 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQL 422
FTG IP S + LES+D S N+LSGEIPQ + TGKIP TQ+
Sbjct: 442 SFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQI 501
Query: 423 QSFDASSFSGND-LCRAPLSGNC 444
SSF GN LC PL +C
Sbjct: 502 IGQPKSSFEGNSGLCGLPLEESC 524
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| TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 2.7e-46, P = 2.7e-46
Identities = 147/447 (32%), Positives = 213/447 (47%)
Query: 7 DNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWS--SASQI 64
D++IP L L L+HC++ S FP+ L + +L ++ LS + I G IP WS S +
Sbjct: 387 DSYIPS-TLEALLLKHCNI-SVFPNILKTLPNLEFIALSTNKISGKIPEWLWSLPRLSSV 444
Query: 65 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFH 124
++ + F G L N++ + +L+L SN+ ALP + + NN G I
Sbjct: 445 FIEENLFTGFEGSSEILVNSS-VRILNLLSNNLEGALPHLPLSVNYFSARNNRYGGDIPL 503
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXX 184
IC R + + L LS N G +P C N+ +IL+L N G+
Sbjct: 504 SICSRRSLV----FLDLSYNNFTGPIPPCPSNF---LILNLRKNNLEGSIPDTYYADAPL 556
Query: 185 XXXXXRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
N L G + SL NC+AL L V N + + P ++ ++ VLIL SN FY
Sbjct: 557 RSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIKDTFPFSLKA-LPKLQVLILHSNNFY 615
Query: 244 N-LLPKELCDLAF--LQIVDLADNNLSGEVPR-CIHNLRAM-VTMNSHAGKAIQYQFLLY 298
L P L F L+I+++A N +G +P N +A +TMN G + Y ++Y
Sbjct: 616 GPLSPPNQGSLGFPELRILEIAGNKFTGSLPPDFFENWKASSLTMNEDQGLYMVYNKVVY 675
Query: 299 ASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVN 358
+ T LE + KG + R L+ IDFS N G+IP + LK L ++N
Sbjct: 676 GT---YYFTSLEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALN 732
Query: 359 LSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPS 418
LSNN FTG IP S+ ++ +ES+D S NQLSG IP + G+IP
Sbjct: 733 LSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQ 792
Query: 419 STQLQSFDASSFSGN-DLCRAPLSGNC 444
TQ+ SSF GN LC PL +C
Sbjct: 793 GTQITGQPKSSFEGNAGLCGLPLQESC 819
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| TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 3.2e-46, P = 3.2e-46
Identities = 144/450 (32%), Positives = 213/450 (47%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLS- 70
P + ++ L C + FP+ L ++L ++D++ + I G IP W+ Q+ +D+S
Sbjct: 376 PLSMESIVLSLCGI-REFPNILKHLQNLIHIDITSNQIKGKIPEWLWT-LPQLSFVDISN 433
Query: 71 --FNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICY 128
FN G N + + +L L +N+F ALP + +I +NS +G I IC
Sbjct: 434 NSFNGFQGSAEVFVNLS-VRILMLDANNFEGALPTLPLSIIGFSAIHNSFTGEIPLSICN 492
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXX 188
R + L + Y NF G +P C N+ M ++L N G+
Sbjct: 493 RTS-LTMVDLSY--NNFT-GPIPQCLSNF---MFVNLRKNDLEGSIPDTFYTDSSLKSLD 545
Query: 189 XRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN-LL 246
N L G + SL NC++L L V N + + P W++ + VL LRSNKFY +
Sbjct: 546 VGYNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKA-LPNLRVLTLRSNKFYGPIS 604
Query: 247 PKELCDLAF--LQIVDLADNNLSGEVPRCIH-NLRAM-VTMNSHAGKAIQYQFLLYASRA 302
P L F L+I ++ADN +G +P N +A +T N G + Y++ A+ +
Sbjct: 605 PPHQGPLGFPELRIFEIADNMFTGSLPPSFFVNWKASALTKNEDGGLYMVYEYDK-AANS 663
Query: 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN 362
P+ T + + KG + ER L IDFS N G+IP + LK L ++NLSNN
Sbjct: 664 PVRYTYTDTIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNN 723
Query: 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQL 422
FTG IP S + +LES+D S NQLSG IP + G+IP TQ+
Sbjct: 724 AFTGHIPLSFANLMNLESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQI 783
Query: 423 QSFDASSFSGN-DLCRAPLSGNCSEHVSIP 451
SSF GN LC PL C + S+P
Sbjct: 784 TGQIKSSFEGNAGLCGLPLQETCFDS-SVP 812
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| TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 489 (177.2 bits), Expect = 7.6e-46, P = 7.6e-46
Identities = 146/448 (32%), Positives = 211/448 (47%)
Query: 6 NDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWS-SASQI 64
+D++IP L L LRHC + + FP+ L + K L Y+D+S + + G IP WS Q
Sbjct: 384 SDSYIP-LTLEMLTLRHCDI-NEFPNILKTLKELVYIDISNNRMKGKIPEWLWSLPLLQS 441
Query: 65 YVLDLS-FNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIF 123
L + F G L N++ L +L L SN+F ALP + + ++NS + I
Sbjct: 442 VTLGNNYFTGFQGSAEILVNSSVL-LLYLDSNNFEGALPDLPLSIKGFGVASNSFTSEIP 500
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXX 183
IC R++ + LS N G +P C +NL ++ L NN G+
Sbjct: 501 LSICNRSS----LAAIDLSYNNFTGPIPPC---LRNLELVYLRNNNLEGSIPDALCDGAS 553
Query: 184 XXXXXXRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242
N L G + S NC++L L V N + + P W++ + VL LRSN+F
Sbjct: 554 LRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWLKA-LPNLQVLTLRSNRF 612
Query: 243 YN-LLPKELCDLAF--LQIVDLADNNLSGEVP-RCIHNLRAMV-TMNSHAGKAIQYQFLL 297
Y + P L F L+I +++DN +G +P N +A TMN G + Y+ L
Sbjct: 613 YGPISPPHQGPLGFPELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMVYEEKL 672
Query: 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSV 357
+ L+ + KG + + L IDFS N G+IP + LK L +V
Sbjct: 673 FDEGGYGYTDALDLQY---KGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAV 729
Query: 358 NLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIP 417
N+SNN FTG IP S+ + +LES+D S NQLSG IP + TG+IP
Sbjct: 730 NISNNAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTGEIP 789
Query: 418 SSTQLQSFDASSFSGN-DLCRAPLSGNC 444
TQ+ SSF GN LC PL +C
Sbjct: 790 QGTQITGQSKSSFEGNAGLCGLPLKESC 817
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| TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 143/462 (30%), Positives = 218/462 (47%)
Query: 1 MTLKVND-NWIPPFQLATLG-LRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFW 58
+ L+VN+ + P + L L+HC L FP+ + K + +D+S + I G IP W
Sbjct: 165 LNLEVNNFSSSLPSEFGYLNNLQHCGL-KEFPNIFKTLKKMEAIDVSNNRINGKIPEWLW 223
Query: 59 SSA--SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNN 116
S + +L+ SF+ G L N++ + +L L SN+F ALP + + +N
Sbjct: 224 SLPLLHLVNILNNSFDGFEGSTEVLVNSS-VRILLLESNNFEGALPSLPHSINAFSAGHN 282
Query: 117 SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXX 176
+ +G I IC R + L +L L+ N L G + C N+ ++L N G
Sbjct: 283 NFTGEIPLSICTRTS-LG---VLDLNYNNLIGPVSQC---LSNVTFVNLRKNNLEGTIPE 335
Query: 177 XXXXXXXXXXXXXRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVL 235
N L G + SL NC++L L V N + + P W++ ++ VL
Sbjct: 336 TFIVGSSIRTLDVGYNRLTGKLPRSLLNCSSLEFLSVDNNRIKDTFPFWLKA-LPKLQVL 394
Query: 236 ILRSNKFYN-LLPKELCDLAF--LQIVDLADNNLSGEVP-RCIHNLRAM-VTMNSHAGKA 290
L SNKFY + P L F L+I++++DN +G + R N +A MN + G
Sbjct: 395 TLSSNKFYGPISPPHQGPLGFPELRILEISDNKFTGSLSSRYFENWKASSAMMNEYVGLY 454
Query: 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350
+ Y+ Y ++ T L+ + KG + R L IDFS+N G IP +
Sbjct: 455 MVYEKNPYGV---VVYTFLDRIDLKYKGLNMEQARVLTSYSAIDFSRNLLEGNIPESIGL 511
Query: 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXX 410
LK L ++NLSNN FTG IP+S+ ++ L+S+D S NQLSG IP +
Sbjct: 512 LKALIALNLSNNAFTGHIPQSLANLKELQSLDMSRNQLSGTIPNGLKQLSFLAYISVSHN 571
Query: 411 XXTGKIPSSTQLQSFDASSFSGN-DLCRAPLSGNCSEHVSIP 451
G+IP TQ+ SSF GN LC PL C ++ + P
Sbjct: 572 QLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERCFDNSASP 613
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| TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 138/446 (30%), Positives = 213/446 (47%)
Query: 18 LGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ 77
L L H + G + PS ++ +L +LDLS++ G +P+ S + LDLS+N+ G
Sbjct: 333 LYLSHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSI-SKLVNLSSLDLSYNKFEGH 391
Query: 78 IPN-LTNAAQLEVLSLGSNSFSI---ALPLISSYLI-ELDFSNNSISGSIFHFICYRANE 132
+P + +++L+ + L NSF+ L L L + D S+NS+ G I +IC
Sbjct: 392 VPQCIWRSSKLDSVDLSYNSFNSFGRILELGDESLERDWDLSSNSLQGPIPQWIC----N 447
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKN 192
+ L S N L G +P C N + +L+L NN +G N
Sbjct: 448 FRFFSFLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNSLSGFMPDFCMDGSMLGSLDVSLN 507
Query: 193 NLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC 251
NL G + S NC + L+V N++ + P W+ + VL+LRSN FY + K
Sbjct: 508 NLVGKLPESFINCEWMEYLNVRGNKIKDTFPVWLGS-LQYLTVLVLRSNTFYGPVYKASA 566
Query: 252 DLAF--LQIVDLADNNLSGEVPR-CIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT- 307
L F ++I+D+++NN G +P+ N M ++ + Y+ + + +
Sbjct: 567 YLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQRPMLTLDYKRNIAIPGSNYMGDD 626
Query: 308 LLEDAF-VVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366
+D+ +V KG + +E+ ++IDFS N FSG IP + L L +NLS N FTG
Sbjct: 627 NHQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSELLHLNLSGNAFTG 686
Query: 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFD 426
IP S+ ++ LE++D S N LSGEIP+ + G +P STQ S +
Sbjct: 687 NIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSNINFSHNHLEGLVPQSTQFGSQN 746
Query: 427 ASSFSGNDLCRAPLSGNCSE-HVSIP 451
SSF GN L C E HV IP
Sbjct: 747 CSSFMGNPRLYG-LDQICGETHVPIP 771
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| TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 143/447 (31%), Positives = 208/447 (46%)
Query: 7 DNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWS--SASQI 64
D++IP L L L HC + S FP+ + +L Y+ LS + I G P WS S +
Sbjct: 385 DSYIPS-TLEVLRLEHCDI-SEFPNVFKTLHNLEYIALSNNRISGKFPEWLWSLPRLSSV 442
Query: 65 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFH 124
++ D G L N++ +++LSL +NS ALP + + +N G I
Sbjct: 443 FITDNLLTGFEGSSEVLVNSS-VQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPL 501
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXX 184
IC R++ +L LS N G++P C NL+ L L N G+
Sbjct: 502 SICNRSS----LDVLDLSYNNFSGQIPPC---LSNLLYLKLRKNNLEGSIPDKYYVDTPL 554
Query: 185 XXXXXRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
N L G + SL NC+AL L V N + + P +++ ++ VL+L SN+FY
Sbjct: 555 RSFDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFYLKA-LPKLQVLLLSSNEFY 613
Query: 244 N-LLPKELCDLAF--LQIVDLADNNLSGEVPRCIH-NLRAMV-TMNSHAGKAIQYQFLLY 298
L P L F L+I+++A N L+G +P N +A TMN G + Y +++
Sbjct: 614 GPLSPPNQGPLGFPELRILEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYMVYSKVIF 673
Query: 299 ASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVN 358
+ T E + KG + E L ID S N G+IP + LK L ++N
Sbjct: 674 GNYH---LTYYETIDLRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALN 730
Query: 359 LSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPS 418
LSNN FTG IP S+ ++ +ES+D S NQLSG IP + G+IP
Sbjct: 731 LSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQ 790
Query: 419 STQLQSFDASSFSGN-DLCRAPLSGNC 444
TQ+ SSF GN LC PL +C
Sbjct: 791 GTQITGQPKSSFEGNAGLCGFPLQESC 817
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| TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 5.9e-45, P = 5.9e-45
Identities = 141/453 (31%), Positives = 215/453 (47%)
Query: 1 MTLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSS 60
+ LK++ P + LGL C++ S FP +L +Q L YLD+S + I G +P WS
Sbjct: 241 INLKISSTVSLPSPIEYLGLLSCNI-SEFPKFLRNQTSLEYLDISANQIEGQVPEWLWSL 299
Query: 61 ASQIYV--LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFS-NNS 117
YV SFN G + +L VL + SN F PL+ + FS NN
Sbjct: 300 PELRYVNISHNSFNGFEGPADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNR 359
Query: 118 ISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNXXXX 177
SG I IC EL+ +IL LS N G +P C+ N +L +L L NN +G
Sbjct: 360 FSGEIPKTIC----ELDNLRILVLSNNNFSGSIPRCFENL-HLYVLHLRNNNLSGIFPEE 414
Query: 178 XXXXXXXXXXXXRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236
N G + SL NC+ + L+V +N + + P+W+ E + +L+
Sbjct: 415 AISHHLQSFDVGH-NLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWL-ELLPNLQILV 472
Query: 237 LRSNKFYNLL--PKELCDLAFLQIVDLADNNLSGEVPRCIH-NLRAMVTMNSHAGKAIQY 293
LRSN+FY + P + + L+I D+++N +G +P M ++ G+ IQY
Sbjct: 473 LRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQY 532
Query: 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERT-LNLVRIIDFSKNNFSGKIPLEVTNLK 352
+ R + ++ KG + + + + + ID S N G IP + LK
Sbjct: 533 T-VTGIDRD----FYHKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLK 587
Query: 353 VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXX 412
+ +++SNN FTG IP S+ + +L+S+D S N+LSG IP +
Sbjct: 588 EVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRL 647
Query: 413 TGKIPSSTQLQSFDASSFSGND-LCRAPLSGNC 444
G IP +TQ+Q+ D+SSF+ N LC APL C
Sbjct: 648 EGPIPETTQIQTQDSSSFTENPGLCGAPLLKKC 680
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00031679 | hypothetical protein (1024 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 453 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-40 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-40 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-38 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-33 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-20 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-19 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 7e-04 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-40
Identities = 126/412 (30%), Positives = 204/412 (49%), Gaps = 30/412 (7%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSN 95
+ +DLS I G I + + I ++LS NQ+ G IP+ T ++ L L+L +N
Sbjct: 70 RVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128
Query: 96 SFSIALPLISSYLIE-LDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW 154
+F+ ++P S +E LD SNN +SG I + I ++ ++L L GN L G++P+
Sbjct: 129 NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS----LKVLDLGGNVLVGKIPNSL 184
Query: 155 MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVG 213
N +L L L++N+ G +P LG + SL+ ++L NNL G I + + T+L LD+
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244
Query: 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
N L IP+ + + L L NK +P + L L +DL+DN+LSGE+P
Sbjct: 245 YNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303
Query: 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVV------MKGREAKYERTL 327
+ L+ + ++ + + + P+ T L V+ G K
Sbjct: 304 VIQLQNLEILHLFSNN--------FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355
Query: 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387
N + ++D S NN +G+IP + + L + L +N G IP+S+G RSL + N
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415
Query: 388 LSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS------STQLQSFDASSFSGN 433
SGE+P + L + L++SNNNL G+I S S Q+ S + F G
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 6e-40
Identities = 143/444 (32%), Positives = 210/444 (47%), Gaps = 54/444 (12%)
Query: 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72
L TL L + L P+ + S L LDL + ++G IPN ++ + + L L+ N
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASN 198
Query: 73 QIHGQIP-NLTNAAQLEVLSLGSNSFSIALP-----LISSYLIELDFSNNSISGSI---- 122
Q+ GQIP L L+ + LG N+ S +P L S L LD N+++G I
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS--LNHLDLVYNNLTGPIPSSL 256
Query: 123 -----FHFICYRANE-----------LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166
++ N+ L K L LS N L GE+P+ + QNL IL L
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316
Query: 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWI 225
+N FTG +P++L SL LQ L L N G I +L L LD+ N L IP +
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376
Query: 226 RERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAM----V 281
+ LIL SN +PK L L+ V L DN+ SGE+P L + +
Sbjct: 377 CSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435
Query: 282 TMNSHAGKAIQYQF------LLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335
+ N+ G+ ++ +L +R L D+F +R NL D
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PDSF--------GSKRLENL----DL 482
Query: 336 SKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS 395
S+N FSG +P ++ +L L + LS N +G IP+ + + + L S+D S NQLSG+IP S
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542
Query: 396 MSSLKFLNHLNLSNNNLTGKIPSS 419
S + L+ L+LS N L+G+IP +
Sbjct: 543 FSEMPVLSQLDLSQNQLSGEIPKN 566
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 9e-38
Identities = 129/450 (28%), Positives = 202/450 (44%), Gaps = 59/450 (13%)
Query: 15 LATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQI 74
L L L L + P L K L ++ L Y+ + G IP + + LDL +N +
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNL 248
Query: 75 HGQIP-NLTNAAQLEVLSLGSNSFSIALP---LISSYLIELDFSNNSISGSIFHFICYRA 130
G IP +L N L+ L L N S +P LI LD S+NS+SG I +
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308
Query: 131 N--------------------ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170
N L + Q+L L N GE+P + NL +LDLS N
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368
Query: 171 TGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERF 229
TG +P L S +L L L N+L G I SL C +L + + +N +P+ +
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKL 427
Query: 230 SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCI--HNLRAMVTMNSHA 287
+ L + +N + D+ LQ++ LA N G +P L + +
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487
Query: 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLE 347
A+ + +L+ + + S+N SG+IP E
Sbjct: 488 SGAVPRKL-----------------------------GSLSELMQLKLSENKLSGEIPDE 518
Query: 348 VTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407
+++ K L S++LS+N +G+IP S M L +D S NQLSGEIP+++ +++ L +N+
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578
Query: 408 SNNNLTGKIPSSTQLQSFDASSFSGN-DLC 436
S+N+L G +PS+ + +AS+ +GN DLC
Sbjct: 579 SHNHLHGSLPSTGAFLAINASAVAGNIDLC 608
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-33
Identities = 107/370 (28%), Positives = 170/370 (45%), Gaps = 63/370 (17%)
Query: 56 IFWSSASQIYVLDLSFNQIHGQIPNLT-NAAQLEVLSLGSNSFSIALP----LISSYLIE 110
I +++S++ +DLS I G+I + ++ ++L +N S +P SS L
Sbjct: 63 ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122
Query: 111 LDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170
L+ SNN+ +GSI + + L LS N L GE+P+ ++ +L +LDL N
Sbjct: 123 LNLSNNNFTGSI------PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176
Query: 171 TGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERF 229
G +P SL +L SL+ L L N L G I L +L + +G N L IP I
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGL 235
Query: 230 SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289
+ + L L N +P L +L LQ + L N LSG +P I +L+ ++++
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL------ 289
Query: 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT 349
D S N+ SG+IP V
Sbjct: 290 --------------------------------------------DLSDNSLSGEIPELVI 305
Query: 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409
L+ L+ ++L +N FTG+IP ++ ++ L+ + N+ SGEIP+++ L L+LS
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365
Query: 410 NNLTGKIPSS 419
NNLTG+IP
Sbjct: 366 NNLTGEIPEG 375
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 1e-20
Identities = 93/283 (32%), Positives = 132/283 (46%), Gaps = 45/283 (15%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L P L +L LDLS + + G IP SS ++ L L N
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNS 391
Query: 74 IHGQIP-NLTNAAQLEVLSLGSNSFS-------IALPLISSYLIELDFSNNSISGSIFHF 125
+ G+IP +L L + L NSFS LPL+ LD SNN++ G I
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF----LDISNNNLQGRINS- 446
Query: 126 ICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185
R ++ Q+L L+ N G LPD + + + L LDLS N+F+G +P LGSL L
Sbjct: 447 ---RKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELM 502
Query: 186 SLHLRKNNLCGTIHS-LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN 244
L L +N L G I L +C L++LD+ N+L IP FS + VL
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA----SFSEMPVLSQ------- 551
Query: 245 LLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN-SH 286
+DL+ N LSGE+P+ + N+ ++V +N SH
Sbjct: 552 --------------LDLSQNQLSGEIPKNLGNVESLVQVNISH 580
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 7e-19
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 342 GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKF 401
G IP +++ L+ LQS+NLS N G IP S+G++ SLE +D S N +G IP+S+ L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 402 LNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND---LCRAPLSGNCSEHVSI 450
L LNL+ N+L+G++P++ + +SF+ D LC P C H+S+
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSV 543
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 111 LDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170
L N + G FI ++L Q + LSGN ++G +P + +L +LDLS N F
Sbjct: 423 LGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 171 TGNLPISLGSLISLQSLHLRKNNLCGTI 198
G++P SLG L SL+ L+L N+L G +
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 43/166 (25%), Positives = 63/166 (37%), Gaps = 55/166 (33%)
Query: 127 CYRANELNKWQI--LYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
C + KW I L L L+G +P+ ++L ++LS N GN+P SLGS+ SL
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468
Query: 185 QSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN 244
+ L L N+ G+I
Sbjct: 469 EVLDLSYNSFNGSI---------------------------------------------- 482
Query: 245 LLPKELCDLAFLQIVDLADNNLSGEVP-----RCIHNLRAMVTMNS 285
P+ L L L+I++L N+LSG VP R +H T N+
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 333 IDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI 392
I+ S N+ G IP + ++ L+ ++LS N F G IPES+G + SL ++ + N LSG +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506
Query: 393 PQSM 396
P ++
Sbjct: 507 PAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 353 VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
+ + L N G IP + +R L+SI+ S N + G IP S+ S+ L L+LS N+
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 413 TGKIPSST-QLQSFDASSFSGNDL 435
G IP S QL S + +GN L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSL 502
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 18 LGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ 77
LGL + L P+ + +HL ++LS + I G IP S S + VLDLS+N +G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGS 481
Query: 78 IP-NLTNAAQLEVLSLGSNSFSIALP 102
IP +L L +L+L NS S +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 354 LQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
L+S++LSNN T + + +L+ +D S N L+ P++ S L L L+LS NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 48/192 (25%), Positives = 70/192 (36%), Gaps = 57/192 (29%)
Query: 23 CHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLT 82
C S W ++ L L G+ G IPN S + ++LS N I G IP
Sbjct: 409 CQFDSTKGKWF-----IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIP--- 459
Query: 83 NAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142
SLGS I+S ++L LS
Sbjct: 460 -------PSLGS---------ITSL-----------------------------EVLDLS 474
Query: 143 GNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS-LISLQSLHLRKN-NLCGTIHS 200
N G +P+ +L IL+L+ N +G +P +LG L+ S + N LCG I
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IPG 533
Query: 201 LENCTALMTLDV 212
L C +++
Sbjct: 534 LRACGPHLSVGA 545
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 332 IIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373
++D S N+F+G IP + L L+ +NL+ N +GR+P ++G
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 59 SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF---SIALPLISSYLIELDFSN 115
+ + LDL+ N++ I L L L L +N+ + L+ S L ELD S+
Sbjct: 90 LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149
Query: 116 NSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP 175
N I + L + L LS N L +LP N NL LDLS NK + +LP
Sbjct: 150 NKIE-----SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLP 202
Query: 176 ISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWI 225
+ L +L+ L L N++ + SL N L L++ N+L E++P I
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESI 251
|
Length = 394 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 61/251 (24%), Positives = 90/251 (35%), Gaps = 67/251 (26%)
Query: 67 LDLSFNQIHGQIP--------NLTNAAQLEVLSLGSNSFSIALP------LISSYLIELD 112
L LS N+ G+IP LT L+ L L N+ L SS L EL
Sbjct: 56 LCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELK 114
Query: 113 FSNNSISGSIFHFICYRANELN-KWQILYLSGNFLQGELPDCWMN--------------- 156
+NN + + +L + L L N L+G +
Sbjct: 115 LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174
Query: 157 -----------------YQNLMILDLSNNKFT----GNLPISLGSLISLQSLHLRKNNL- 194
NL +LDL+NN T L +L SL SL+ L+L NNL
Sbjct: 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
Query: 195 ---CGTIHS--LENCTALMTLDVGENEL----VENIPTWIRERFSRIVVLILRSNKFYNL 245
+ S L +L+TL + N++ +++ + E ++ L LR NKF
Sbjct: 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGNKF--- 290
Query: 246 LPKELCDLAFL 256
+E L
Sbjct: 291 -GEEGAQLLAE 300
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.93 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.8 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.8 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.78 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.76 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.73 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.7 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.52 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.5 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.25 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.23 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.22 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.21 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.19 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.15 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.08 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.06 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.03 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.0 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.99 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.98 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.95 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.94 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.92 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.9 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.82 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.8 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.78 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.69 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.66 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.47 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.41 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.33 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.26 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.26 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.15 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.1 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.09 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.96 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.96 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.88 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.85 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.81 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.77 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.73 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.7 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.6 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.6 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.97 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.92 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.62 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.61 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.55 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.49 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.46 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.41 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.27 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.26 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.48 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.83 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.56 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.4 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.6 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.6 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 83.13 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 81.92 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 80.11 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=366.65 Aligned_cols=430 Identities=30% Similarity=0.403 Sum_probs=279.3
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN 80 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~ 80 (453)
++.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+ .+..
T Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChh
Confidence 46678888889999999999998887888888889999999999888877788776 778888999998888874 5556
Q ss_pred ccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 81 LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 81 l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
+.++++|++|++++|.+.+..+.. +++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+..+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI----FSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH----hhccCcCEEECcCCeeccCCChhHcCC
Confidence 778888888888888877655543 4578888888887765444333 357778888888877777777777777
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCccccc-cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT-IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
++|++|++++|.+.+..|..+..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+.+..+..+. .+++++.++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~ 386 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLI 386 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEE
Confidence 7788888877777777777777777777777777777643 34566667777777777776665555443 345566666
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccch-------------
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP------------- 303 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~------------- 303 (453)
+.+|.+.+..|..+..+++|+.|++++|.+.+.+|..+..++.|+.++++++.............+.
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 6666665555555666666666666666665555555555555555555555433211110000000
Q ss_pred ---------hhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC
Q 048417 304 ---------LIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 304 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
.+.. .......+.+.....+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..
T Consensus 467 ~~p~~~~~~~L~~-L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 467 GLPDSFGSKRLEN-LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred ecCcccccccceE-EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 0000 000001111222233445556666666666665556666666666666666666666666666666
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC-ccCC
Q 048417 375 MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRA 438 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~ 438 (453)
+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|....+..+....+.+|+ +|+.
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 666666666666666666666666666666666666666666655555555555666666 5553
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=362.05 Aligned_cols=428 Identities=29% Similarity=0.401 Sum_probs=352.1
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN 80 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~ 80 (453)
+|.+|. ..+++|++|+|++|.+++..|..++.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+ .+..
T Consensus 131 ~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~ 207 (968)
T PLN00113 131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRE 207 (968)
T ss_pred ccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChH
Confidence 344554 458899999999999988889999999999999999999988899887 889999999999999875 5667
Q ss_pred ccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 81 LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 81 l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
+.++.+|+.|++++|.+.+..+.. +++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh----hHhCCCCCCEEECcCCeeeccCchhHhhc
Confidence 889999999999999998766543 67899999999998765444 44579999999999999998899999999
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.. ..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~ 362 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLD 362 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEE
Confidence 99999999999999888988999999999999999987654 668889999999999999988777765 4689999999
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhh---------hh
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLI---------AT 307 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~---------~~ 307 (453)
+++|.+.+..|..+..+.+|+.+++++|.+.+.+|..+..+++|+.+++.+|.............+... ..
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 999999988999999999999999999999999999999999999999999875432211111110000 00
Q ss_pred hhhhHHHHhcCC------------cchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCC
Q 048417 308 LLEDAFVVMKGR------------EAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTM 375 (453)
Q Consensus 308 ~~~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 375 (453)
........++.. ........++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|+.+..+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 000000000000 00011123578888888888887888888889999999999999988889889999
Q ss_pred CCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccC
Q 048417 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 376 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~ 437 (453)
++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|++.+
T Consensus 523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999999999999999999999877764 778899999999998654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=271.30 Aligned_cols=365 Identities=20% Similarity=0.204 Sum_probs=186.9
Q ss_pred EEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccc---cccCcEEECcCCC
Q 048417 41 YLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNS 117 (453)
Q Consensus 41 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~ 117 (453)
+|++++|++ ..+.-.+|.++++|+++.+..|.++.++.......+|+.|++.+|.+.+.-... ++.|+.||++.|.
T Consensus 82 ~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeecccccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 355555555 444444445555555555555555554444444445555555555554433322 3455555555555
Q ss_pred CCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccc
Q 048417 118 ISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT 197 (453)
Q Consensus 118 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 197 (453)
++......++ .-.++++|+|++|+|+......|..+.+|.+|.|++|.++...+..|.++++|+.|++..|.+..+
T Consensus 161 is~i~~~sfp----~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 161 ISEIPKPSFP----AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhcccCCCCC----CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 5432222222 234555555555555544444455555555555555555544444454555555555555555444
Q ss_pred c-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc
Q 048417 198 I-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276 (453)
Q Consensus 198 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 276 (453)
. -.|.++++|+.+.+..|.+.. ..+..|-.+.++++|++..|.+...-..++..+.+|+.|++++|.+...-+..|.-
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~k-L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISK-LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCccc-ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 2 445555555555555555533 33333334555555555555554444444555555555555555555455555555
Q ss_pred ccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcE
Q 048417 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQS 356 (453)
Q Consensus 277 ~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 356 (453)
+++|+.|+++.+.+..+... .+..+..|++|++++|+++-.....|..+++|++
T Consensus 316 tqkL~~LdLs~N~i~~l~~~--------------------------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEG--------------------------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccceeEeccccccccCChh--------------------------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 55555555555544333332 1122444566666666555333444555566666
Q ss_pred EEcCCccCCCCC---CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCC
Q 048417 357 VNLSNNFFTGRI---PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSG 432 (453)
Q Consensus 357 L~l~~n~~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~ 432 (453)
|+|++|.+...+ ...|.++++|++|++.+|++.++....|..++.|++|+|.+|.|...-++. .+| .|+++.++.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 666666544222 233455666666666666665444455666666666666666655443433 444 555555543
Q ss_pred CC-ccCC
Q 048417 433 ND-LCRA 438 (453)
Q Consensus 433 n~-l~~~ 438 (453)
-. +|+.
T Consensus 449 ssflCDC 455 (873)
T KOG4194|consen 449 SSFLCDC 455 (873)
T ss_pred cceEEec
Confidence 33 4444
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=267.88 Aligned_cols=367 Identities=19% Similarity=0.210 Sum_probs=313.2
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEEE
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVLS 91 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L~ 91 (453)
+..+.|++++|.+...-+..|.++++|+.+++..|.+ ..+|..- +...+|+.|+|.+|.|+. ..+.+..++.||.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3567899999999887778899999999999999999 8888764 556779999999999987 445688889999999
Q ss_pred ccCCccccccccccc---cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccC
Q 048417 92 LGSNSFSIALPLISS---YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNN 168 (453)
Q Consensus 92 l~~~~~~~~~~~~~~---~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 168 (453)
++.|.++......++ .+++|++++|.++....+. |.++..|..|.|++|+++..-+..|.++++|+.|+|..|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 999999988777765 6999999999998655443 346889999999999999555566777999999999999
Q ss_pred ccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCc
Q 048417 169 KFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP 247 (453)
Q Consensus 169 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 247 (453)
.+...---.|.++++|+.|.+..|.+.... ..|.++.++++|+++.|.+......+++ ++..|++|++++|.+....+
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeec
Confidence 987332345889999999999999998776 6788999999999999999776677776 78999999999999999989
Q ss_pred hhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhc
Q 048417 248 KELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTL 327 (453)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (453)
..+..+++|++|++++|.++...+..+..+..|+.|+++.+.+.+.....+ ..+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af--------------------------~~l 364 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF--------------------------VGL 364 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH--------------------------HHh
Confidence 999999999999999999997777899999999999999988666555422 347
Q ss_pred CcccEEecCCCcCCCc---CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 048417 328 NLVRIIDFSKNNFSGK---IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNH 404 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 404 (453)
.+|+.||+++|.++.. ....|..+++|+.|.+.||++......+|.+++.|++|||.+|.|..+-++.|..+ .|++
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhh
Confidence 7899999999998632 34467889999999999999994444899999999999999999998889999999 8999
Q ss_pred EEccCCccc
Q 048417 405 LNLSNNNLT 413 (453)
Q Consensus 405 L~l~~n~l~ 413 (453)
|-+..-.+.
T Consensus 444 Lv~nSssfl 452 (873)
T KOG4194|consen 444 LVMNSSSFL 452 (873)
T ss_pred hhhcccceE
Confidence 988654443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-34 Score=255.22 Aligned_cols=411 Identities=27% Similarity=0.360 Sum_probs=228.2
Q ss_pred CcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCc
Q 048417 9 WIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 88 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~ 88 (453)
|.+-..++++++++|.++.. ...+.++..|..+++++|++ ...|.++ +.+..++.++.++|.+...++++.....++
T Consensus 41 wW~qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l-~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKL-SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhcchhhhhhccCchhhc-cHhhhcccceeEEEeccchh-hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 33344555566666655332 23355555556666666655 3444444 445555555555555555555555555555
Q ss_pred EEEccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 89 VLSLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 89 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.++.++|.+....+.. +..+..++..+|++.... ..+..+.++..+++.+|.+.. .|...-.+.+|++++..
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp-----~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLP-----EDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccccCc-----hHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccc
Confidence 5555555555443332 234445555555554222 222235555555555555552 23223335556666655
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
.|.+. .+|+.++.+.+|..|++..|++...+ .|.+|+.|+.+.++.|.+ .-.|.....+++++..|+++.|++.. .
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke-~ 267 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKE-V 267 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeecccccccc-C
Confidence 55555 45555555566666666666555444 555555666666655555 23455555555566666666665533 4
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccch-hhhhh-----------------
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP-LIATL----------------- 308 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~-~~~~~----------------- 308 (453)
|..++-+++|.+||+++|.++ ..|-.++++ .|+.|.+.+++..+.......+.-+ .+...
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 455555556666666666665 555555555 5565555555432222111110000 00000
Q ss_pred --------------------------------hhhHHHHhc--------------------------------------C
Q 048417 309 --------------------------------LEDAFVVMK--------------------------------------G 318 (453)
Q Consensus 309 --------------------------------~~~~~~~~~--------------------------------------~ 318 (453)
+.+.+.... +
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 000000000 0
Q ss_pred CcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccC
Q 048417 319 REAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSS 398 (453)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 398 (453)
.....++.+++|+.|++++|-+. ..|..++.+-.|+.|+++.|.+. .+|+++..+..++.+-.+.|++....++.+..
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 01222444566666666666554 55655666666666666666666 66666666666666666667777666677999
Q ss_pred CCCCCEEEccCCcccccCCCCcccceeecccCCCCCcc
Q 048417 399 LKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLC 436 (453)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~ 436 (453)
|.+|..||+.+|.+...+|.++.+++|+.++++|||..
T Consensus 504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999999999988888899999999999999865
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-33 Score=257.80 Aligned_cols=370 Identities=23% Similarity=0.296 Sum_probs=240.6
Q ss_pred CCcccEEEccCCcCC-CCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 12 PFQLATLGLRHCHLG-SRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
++-++-.|+++|.+. +.+|.....++.++.|.|...++ -.+|+.+ +.+..|++|.+++|++......+..++.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 444555666666664 34555566666666666666665 5556555 55666666666666666555555556666666
Q ss_pred EccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCcc
Q 048417 91 SLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170 (453)
Q Consensus 91 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 170 (453)
.+..|.+. .++ ++..+-.+..|.+||+++|+++ ..|..+..-.++-.|++++|.|
T Consensus 84 ~~R~N~LK---------------------nsG---iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 84 IVRDNNLK---------------------NSG---IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred hhhccccc---------------------cCC---CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc
Confidence 55555443 211 1112223555556666666555 4555555555555666666655
Q ss_pred CCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc-cccCchh
Q 048417 171 TGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF-YNLLPKE 249 (453)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~ 249 (453)
..+....|.++..|-.|++++|++...++.+..+..|++|++++|.+.-.-...+ .++.+|.+|.+++..- ...+|..
T Consensus 139 etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCc
Confidence 5222223445555556666666665555555555666666666654422111111 1344555555555432 2346667
Q ss_pred hcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCc
Q 048417 250 LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNL 329 (453)
Q Consensus 250 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (453)
+..+.+|..+|++.|.+. .+|+++.++++|+.|+++++++......... -.+
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~---------------------------W~~ 269 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGE---------------------------WEN 269 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHH---------------------------Hhh
Confidence 777778888888888877 7888888888888888888776544332111 234
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC-CCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG-RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
|++|++++|+++ ..|.++..++.|+.|+..+|++.- -+|..++.+.+|+.+...+|.+. .+|+.+..++.|+.|.|+
T Consensus 270 lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 270 LETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 788999999998 888888889999999999998752 47888999999999999988877 899999999999999999
Q ss_pred CCcccccCCCCcccceeecccCCCCC-ccCCC
Q 048417 409 NNNLTGKIPSSTQLQSFDASSFSGND-LCRAP 439 (453)
Q Consensus 409 ~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~~ 439 (453)
+|++...+..+.-++.|+.+|+..|| +..-|
T Consensus 348 ~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 348 HNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99988666667888999999999998 54444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-31 Score=234.00 Aligned_cols=392 Identities=22% Similarity=0.278 Sum_probs=279.0
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 84 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~ 84 (453)
+.+.+.++..+.++++++|.+ ...|.+++++..++.++.++|++ +.+|.++ ....+|+.++++.|.+...++.++.+
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l-~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKL-SQLPAAIGELEALKSLNVSHNKL-SELPEQI-GSLISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred ccHhhhcccceeEEEeccchh-hhCCHHHHHHHHHHHhhcccchH-hhccHHH-hhhhhhhhhhccccceeecCchHHHH
Confidence 345567788899999999988 45788899999999999999998 8888887 77889999999999999888888889
Q ss_pred CCCcEEEccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccE
Q 048417 85 AQLEVLSLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMI 162 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 162 (453)
..+..++-.+|++++.+... +.++..+++.+|.+....+..+ .++.|+++|+..|.++ .+|..++.+.+|..
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-----~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-----AMKRLKHLDCNSNLLE-TLPPELGGLESLEL 210 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-----HHHHHHhcccchhhhh-cCChhhcchhhhHH
Confidence 99999999999988776654 4577788888888775544433 2778888888887777 67777888888888
Q ss_pred EEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCc
Q 048417 163 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNK 241 (453)
Q Consensus 163 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 241 (453)
|++..|++. ..| .|+.+..|.++++..|.+...+ +..+.++++..||+..|.+ ++.|+.++ .+.+|..|++++|.
T Consensus 211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~c-lLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEIC-LLRSLERLDLSNND 286 (565)
T ss_pred HHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHH-HhhhhhhhcccCCc
Confidence 888888887 555 5777777888887777776665 4555777777888877777 44666655 46677777777777
Q ss_pred ccccCchhhcCCCCccEEEccCCcCCC-----------------------------------------Cccccccccccc
Q 048417 242 FYNLLPKELCDLAFLQIVDLADNNLSG-----------------------------------------EVPRCIHNLRAM 280 (453)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------------------------------------~~~~~~~~~~~L 280 (453)
+++ .|..++++ +|+.|.+.||.+.. ........+...
T Consensus 287 is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 287 ISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred ccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 755 34566666 66666666664320 000011222333
Q ss_pred ceeccccCcchhhhhh------------------------------------------hhhccchhhhhhhhhHHHHhcC
Q 048417 281 VTMNSHAGKAIQYQFL------------------------------------------LYASRAPLIATLLEDAFVVMKG 318 (453)
Q Consensus 281 ~~l~i~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 318 (453)
+.|++++-+...++.. ..+..+..+..+....+...+.
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N 444 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN 444 (565)
T ss_pred hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc
Confidence 3333333221111110 0011111111111111222111
Q ss_pred ----CcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc
Q 048417 319 ----REAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ 394 (453)
Q Consensus 319 ----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 394 (453)
..+.....+..|+.++++.|++. ..|..+.....++.+-.++|++....+..+.+|.+|..||+.+|.+. .+|.
T Consensus 445 N~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 445 NLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred chhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 12333445667999999999997 78888877777888888889998556666999999999999999999 8999
Q ss_pred cccCCCCCCEEEccCCccc
Q 048417 395 SMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 395 ~l~~l~~L~~L~l~~n~l~ 413 (453)
.+.+|.+|++|.+++|+|.
T Consensus 523 ~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhccccceeEEEecCCccC
Confidence 9999999999999999999
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-30 Score=239.60 Aligned_cols=346 Identities=23% Similarity=0.279 Sum_probs=275.6
Q ss_pred ccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCccc--CCCcCc
Q 048417 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIH--GQIPNL 81 (453)
Q Consensus 4 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~--~~~~~l 81 (453)
.+|+.....++++.|.|....+ ..+|..++.+.+|++|.+++|++++... .+ ..++.||.+++.+|++. ++++.+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vhG-EL-s~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVHG-EL-SDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhhh-hh-ccchhhHHHhhhccccccCCCCchh
Confidence 4788888899999999998888 5678999999999999999999954433 33 67899999999999885 588999
Q ss_pred cCCCCCcEEEccCCcccccccc--ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCc
Q 048417 82 TNAAQLEVLSLGSNSFSIALPL--ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQN 159 (453)
Q Consensus 82 ~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 159 (453)
..+..|..|++++|++...+.. ..+++-.|++++|.+.......+. ++..|-.||+++|++. .+|..++.+..
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi----nLtDLLfLDLS~NrLe-~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI----NLTDLLFLDLSNNRLE-MLPPQIRRLSM 174 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH----hhHhHhhhccccchhh-hcCHHHHHHhh
Confidence 9999999999999999865543 356788999999998754444333 5888889999999998 77888999999
Q ss_pred ccEEEcccCccCCCCCccccccccccEEEccCCccc--cccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLC--GTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
|++|.+++|.+...-...+..+.+|+.|++++.+-+ .++..+..+.+|+.+|++.|++ ..+|...+ .+++|+.|++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly-~l~~LrrLNL 252 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLY-KLRNLRRLNL 252 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHh-hhhhhheecc
Confidence 999999999887443445566777888888876533 3456778888999999999887 44676665 6889999999
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhc
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMK 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (453)
++|.++.. ......+.+|++|+++.|+++ ++|.++.+++.|++
T Consensus 253 S~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k----------------------------------- 295 (1255)
T KOG0444|consen 253 SGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK----------------------------------- 295 (1255)
T ss_pred CcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH-----------------------------------
Confidence 99988653 345666788899999999998 88888887776654
Q ss_pred CCcchhhhhcCcccEEecCCCcCC-CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 318 GREAKYERTLNLVRIIDFSKNNFS-GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
|..++|.++ +.+|.-++.+..|+.+..++|.+. ..|+.+..|..|+.|.|++|++. .+|+.+
T Consensus 296 ---------------Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 296 ---------------LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred ---------------HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence 445555543 246667778888888888888777 88888888888888888888888 788888
Q ss_pred cCCCCCCEEEccCCccc
Q 048417 397 SSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~ 413 (453)
.-++.|+.|++++|.-.
T Consensus 359 HlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhcCCcceeeccCCcCc
Confidence 88888888888888543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-28 Score=237.49 Aligned_cols=402 Identities=25% Similarity=0.312 Sum_probs=235.1
Q ss_pred cCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcE
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEV 89 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~ 89 (453)
..+-+|+.||+++|.+ +.+|..+..+++|+.|+++.|.+ ...|.+. .++.+|+++.|.+|.....+..+..+.+|++
T Consensus 42 ~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYI-RSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQY 118 (1081)
T ss_pred hheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhH-hhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccc
Confidence 4455699999999988 56788899999999999999999 7777665 7889999999999999999999999999999
Q ss_pred EEccCCccccccccc--cc-------------------cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC
Q 048417 90 LSLGSNSFSIALPLI--SS-------------------YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG 148 (453)
Q Consensus 90 L~l~~~~~~~~~~~~--~~-------------------~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 148 (453)
|++++|.+...+... +. .++.+++..+.+.+.+...+. .+.. .+++++|.+.
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~----~l~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY----NLTH--QLDLRYNEME- 191 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh----hhhe--eeecccchhh-
Confidence 999999887533221 11 234444444444443332221 1222 3666666655
Q ss_pred CCchhhhcCCcccEEEcccCccC--------------------CCCCccccccccccEEEccCCccccccccccccCCCC
Q 048417 149 ELPDCWMNYQNLMILDLSNNKFT--------------------GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALM 208 (453)
Q Consensus 149 ~~~~~l~~l~~L~~L~l~~~~~~--------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 208 (453)
.. .+..+..|+.+....|++. ...+. ....+|++++++.+++...++.+..+.+|+
T Consensus 192 ~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 192 VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLE 267 (1081)
T ss_pred hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccce
Confidence 11 1333444444444444333 11100 111234444444444444444444444444
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc-ccc-cceeccc
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN-LRA-MVTMNSH 286 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~l~i~ 286 (453)
.+++..|.+ ...+..++ ...+|+.+.+..|.+.. +|......++|++|++..|++. ..|..+-. ... +..++.+
T Consensus 268 ~l~~n~N~l-~~lp~ri~-~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 268 ALNANHNRL-VALPLRIS-RITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred EecccchhH-HhhHHHHh-hhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhh
Confidence 444444444 22333332 33444444444444433 2333344455555555555554 33332211 111 3333333
Q ss_pred cCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC
Q 048417 287 AGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366 (453)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 366 (453)
.++....+.. +......-...+.+...+++.-...+-....|+.|++++|++.......+.+++.|++|+++||.++
T Consensus 344 ~n~l~~lp~~--~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 344 SNKLSTLPSY--EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hccccccccc--cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 3333322211 1111111111222222233334444556677888888888776333345667777888888888877
Q ss_pred CCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc-cCCCCcccceeecccCCCCC
Q 048417 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG-KIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 367 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~n~ 434 (453)
.+|..+..++.|++|...+|++. .+| .+..++.|+.+|++.|+++. .++....-++|+.+|++||.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777888888888888777 667 67788899999999998874 33433222789999999886
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-27 Score=226.82 Aligned_cols=390 Identities=24% Similarity=0.266 Sum_probs=275.3
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCc
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNL 81 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l 81 (453)
.+.+|..+..+.+|+.|.++.|-+ ...|....++.+|+++.|.+|++ ...|..+ ..+++|+.||++.|.+...+..+
T Consensus 57 ~~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~-~~lknl~~LdlS~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 57 ISSFPIQITLLSHLRQLNLSRNYI-RSVPSSCSNMRNLQYLNLKNNRL-QSLPASI-SELKNLQYLDLSFNHFGPIPLVI 133 (1081)
T ss_pred cccCCchhhhHHHHhhcccchhhH-hhCchhhhhhhcchhheeccchh-hcCchhH-HhhhcccccccchhccCCCchhH
Confidence 356788888899999999999977 55778889999999999999998 7888887 78899999999999998766655
Q ss_pred cCCCCCcEEEccCC-------------------ccccccccccccCcE-EECcCCCCCCchhhhhhhhhcccCc------
Q 048417 82 TNAAQLEVLSLGSN-------------------SFSIALPLISSYLIE-LDFSNNSISGSIFHFICYRANELNK------ 135 (453)
Q Consensus 82 ~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~L~~-L~l~~~~l~~~~~~~~~~~~~~~~~------ 135 (453)
..+..+..+..++| .+...+......++. |++.+|.+... .+..+++
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~-------dls~~~~l~~l~c 206 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL-------DLSNLANLEVLHC 206 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh-------hhhhccchhhhhh
Confidence 55554444444444 222222222334444 78887776521 1112333
Q ss_pred --------------ccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccc
Q 048417 136 --------------WQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL 201 (453)
Q Consensus 136 --------------L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 201 (453)
++.|+.+.|.++...+ -....+|++++++.+.+. ..|++++.+.+|+.+++..|.++..+..+
T Consensus 207 ~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri 283 (1081)
T KOG0618|consen 207 ERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRI 283 (1081)
T ss_pred hhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHH
Confidence 4444444444442111 223578999999999999 67789999999999999999998888888
Q ss_pred cccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCC-CccEEEccCCcCCCCccc-ccccccc
Q 048417 202 ENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLA-FLQIVDLADNNLSGEVPR-CIHNLRA 279 (453)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~-~~~~~~~ 279 (453)
....+|+.+++..|.+.. ++... +....|++|++..|.+.......+.-.. ++..+..+.+.+. ..|. .=..++.
T Consensus 284 ~~~~~L~~l~~~~nel~y-ip~~l-e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELEY-IPPFL-EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAA 360 (1081)
T ss_pred hhhhhHHHHHhhhhhhhh-CCCcc-cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHH
Confidence 888999999999999854 44332 4578999999999999776554444433 3677777777776 4441 1233455
Q ss_pred cceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEc
Q 048417 280 MVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNL 359 (453)
Q Consensus 280 L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 359 (453)
|..|.+.++....-.+......+.. .+...++..+..-......+++.|++|++++|.++ .+|..+..++.|++|..
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hL--KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHL--KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccce--eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 5566555554333222211111110 01112222233334455667888999999999998 78888999999999999
Q ss_pred CCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcc
Q 048417 360 SNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412 (453)
Q Consensus 360 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 412 (453)
.+|++. ..| .+..+++|+.+|++.|+++.........-|+||+||+++|..
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999998 788 688999999999999999865444444448999999999974
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=210.76 Aligned_cols=340 Identities=19% Similarity=0.149 Sum_probs=230.0
Q ss_pred CCccccCCCcccEEEcCCCcc------cccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccc
Q 048417 29 FPSWLYSQKHLNYLDLSYSGI------IGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALP 102 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 102 (453)
...+|.++++|+.|.+..+.. ...+|..+..-...|+.|.+.++.+...+..+ ...+|+.|++.++.+...+.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence 345688888999888866532 22355555333356889998888887776665 56788899998888765443
Q ss_pred --cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccc
Q 048417 103 --LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS 180 (453)
Q Consensus 103 --~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 180 (453)
..+++|++|+++++......+ .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 236788888888765332222 23457888999998887666778888888889999998875444666544 6
Q ss_pred cccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccc-------ccCchhhcCC
Q 048417 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY-------NLLPKELCDL 253 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~~~~~ 253 (453)
+++|+.|++++|......+. ...+|+.|+++++.+.. +|..+ .+++|+.|.+.++... ...+.....+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~-lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEE-FPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccc-ccccc--cccccccccccccchhhccccccccchhhhhcc
Confidence 78888888888754322222 23578888888887743 45433 4677777777664321 1111223335
Q ss_pred CCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEE
Q 048417 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRII 333 (453)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 333 (453)
++|+.|++++|.....+|..+.++++|+.|++.+|........ . ..+++|+.|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--------------------------~-~~L~sL~~L 830 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--------------------------G-INLESLESL 830 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC--------------------------C-CCccccCEE
Confidence 6888889988877778888888888888888877653221000 0 135678888
Q ss_pred ecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc
Q 048417 334 DFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 334 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
++++|..-...|.. .++|+.|++++|.+. .+|.++..+++|+.|++++|.-...+|..+..++.|+.+++++|.
T Consensus 831 ~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 831 DLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88876543333332 357888888888887 677778888888888888865555677777778888888888874
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=208.22 Aligned_cols=340 Identities=16% Similarity=0.146 Sum_probs=260.4
Q ss_pred CCCcCCCcccEEEccCCcC------CCCCCccccCCC-cccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc
Q 048417 7 DNWIPPFQLATLGLRHCHL------GSRFPSWLYSQK-HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP 79 (453)
Q Consensus 7 ~~~~~~~~L~~L~L~~~~~------~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~ 79 (453)
.+|..+++|+.|.+..+.. ...+|..|..++ +|+.|.+.++.+ ..+|..+ ...+|++|+++++.+.....
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f--~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF--RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC--CccCCcEEECcCcccccccc
Confidence 3477889999999976532 223566666664 699999999988 7778775 46899999999999988777
Q ss_pred CccCCCCCcEEEccCCcccccccc--ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 80 NLTNAAQLEVLSLGSNSFSIALPL--ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 80 ~l~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
.+..+++|+.|+++++......+. .+++|++|++++|..... ++..+..+++|+.|++++|.....+|..+ ++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~----lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE----LPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccc----cchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 788899999999998764433332 367999999999865433 34445579999999999986554677654 78
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccc------cCchHHHhccCc
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE------NIPTWIRERFSR 231 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~ 231 (453)
++|++|++++|......|.. ..+|+.|++++|.+...+..+ .+++|+.|.+.++.... ..+...+...++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 99999999999655455532 467999999999987666444 57888888887743211 111122234578
Q ss_pred ceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhh
Q 048417 232 IVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311 (453)
Q Consensus 232 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (453)
|+.|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|......
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~----------------- 841 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF----------------- 841 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-----------------
Confidence 9999999998888889999999999999999987655777766 7899999999987532110
Q ss_pred HHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
.....+|++|++++|.++ .+|.++..+++|+.|++++|.....+|..+..+++|+.+++++|.-.
T Consensus 842 ------------p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 842 ------------PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ------------cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 012357999999999998 78889999999999999997665578888889999999999999643
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-19 Score=175.24 Aligned_cols=260 Identities=24% Similarity=0.247 Sum_probs=145.9
Q ss_pred CeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEecc
Q 048417 63 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142 (453)
Q Consensus 63 ~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 142 (453)
.-..|+++++.++..+..+. .+|+.|++.+|+++.. +..+++|++|++++|.++... . ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~L-P~lp~~Lk~LdLs~N~LtsLP-~-------lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLP-V-------LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCC-CCCCCCCcEEEecCCccCccc-C-------cccccceeecc
Confidence 34566777776666555443 3667777777766643 234556666666666655221 0 13456666666
Q ss_pred CCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCc
Q 048417 143 GNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIP 222 (453)
Q Consensus 143 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 222 (453)
+|.++ .+|.. ...|+.|++++|.+. .+|. ..++|+.|++++|.+..++.. ...|+.|++++|.+.. +|
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC---cccccccccccCcccc-cc
Confidence 66655 33332 244556666666665 3332 234566666666666544321 2345555566555532 22
Q ss_pred hHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccc
Q 048417 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 223 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
. ...+|+.|++++|.+.. +|.. ..+|+.|++++|.+. .+|..
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----------------------------- 380 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----------------------------- 380 (788)
T ss_pred c----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc-----------------------------
Confidence 1 11345555555555543 2221 234455555555544 23221
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEE
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESID 382 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 382 (453)
+.+|+.|++++|.++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|+
T Consensus 381 ------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~ 428 (788)
T PRK15387 381 ------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLS 428 (788)
T ss_pred ------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhh
Confidence 234677777777776 34432 256777888888777 45542 34577778
Q ss_pred cCCCcCCCCCCccccCCCCCCEEEccCCcccccC
Q 048417 383 FSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKI 416 (453)
Q Consensus 383 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 416 (453)
+++|+++ .+|..+..++.|+.|++++|++++..
T Consensus 429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 8888777 66777777778888888888777543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=174.50 Aligned_cols=260 Identities=24% Similarity=0.260 Sum_probs=172.1
Q ss_pred CCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
.-..|+++++.++..+....+.|+.|++.+|.++... . ..++|++|++++|+++ .+|.. .++|++|++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP-----~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCC-----C---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 4566777777777554444556777777777766321 1 2467777777777776 34432 356777777
Q ss_pred ccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
++|.+. .+|.. ..+|+.|++++|+++.++. ..++|+.|++++|.+.+ ++. ....|+.|++.+|.+..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCC----CcccccccccccCcccc-
Confidence 777666 33332 2456677777777665543 23567777777776644 332 12346666666666644
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+|. + ..+|+.|++++|++. .+|..
T Consensus 337 LP~-l--p~~Lq~LdLS~N~Ls-~LP~l---------------------------------------------------- 360 (788)
T PRK15387 337 LPT-L--PSGLQELSVSDNQLA-SLPTL---------------------------------------------------- 360 (788)
T ss_pred ccc-c--ccccceEecCCCccC-CCCCC----------------------------------------------------
Confidence 222 1 235667777776665 33321
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
.++|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|++. .+|.. ..+|+.|
T Consensus 361 -p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L 427 (788)
T PRK15387 361 -PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSL 427 (788)
T ss_pred -Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhh
Confidence 234678889999887 45543 357999999999998 56643 368999999999998 46654 3478899
Q ss_pred EccCCcccccCCCCcccceeecccCCCCCccCCC
Q 048417 406 NLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 406 ~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~ 439 (453)
++++|+++..+..+..+++|..+++++|++++..
T Consensus 428 ~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 428 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 9999999955445688999999999999987653
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-20 Score=163.25 Aligned_cols=286 Identities=21% Similarity=0.168 Sum_probs=137.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccC-Ccccccc-ccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK-NNLCGTI-HSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~ 211 (453)
+....++|..|+|+..-+..|..+++|+.|+|+.|.|..+.|..|.+++.+..|-+.+ |+|+.++ ..|.++.+++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3455566666666644445566666666666666666666666666666655554444 6666655 4556666666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
+.-|.+.. +....+..++++..|.+..|.+...-...|..+..++.+.+..|.+. +..+++.+.+. .
T Consensus 147 lNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL~wla~~-------~ 213 (498)
T KOG4237|consen 147 LNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CDCNLPWLADD-------L 213 (498)
T ss_pred cChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----cccccchhhhH-------H
Confidence 66555533 33344445666666666666554433335555555555555555421 11111111110 0
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
......+++........+...-.. ......+......+.+--.+.+....+.| ..|..+++|+.|++++|++++.-+.
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 000111111111111111110000 00000011111111111111222222333 2355566666666666666655555
Q ss_pred cccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCC
Q 048417 371 SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGN 433 (453)
Q Consensus 371 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n 433 (453)
+|.....+++|.|..|++...-..+|.++..|+.|+|.+|+|+..-|.. ..+.+|..+++-+|
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 6666666666666666665444445666666666666666666544443 55556666665555
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-20 Score=163.73 Aligned_cols=301 Identities=20% Similarity=0.172 Sum_probs=208.9
Q ss_pred CCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEccc-CccCC
Q 048417 94 SNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSN-NKFTG 172 (453)
Q Consensus 94 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~ 172 (453)
+-+++..+...++.-.++++..|+++....+.+ +.+++|+.|||++|.|+..-|+.|.++.++.+|-+-+ |+|++
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF----~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAF----KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhc----cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 334454555556788999999999987666654 4699999999999999988999999999988876655 89997
Q ss_pred CCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhc
Q 048417 173 NLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC 251 (453)
Q Consensus 173 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 251 (453)
..-..|.++..++.|.+.-|++.-+. ..+..++++..|.+..|.+. .++...+..+.+++.+.+..|++.. .+
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dC 204 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DC 204 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----cc
Confidence 66667999999999999988887666 67888999999999999873 3565556678888888888776421 12
Q ss_pred CCCCccEEEccCCcCCCCccccccccc---ccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcC
Q 048417 252 DLAFLQIVDLADNNLSGEVPRCIHNLR---AMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328 (453)
Q Consensus 252 ~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (453)
+++.+...... +.+. ..+..+. .+..-.+..-+.-++... ...+.......+..........+..++
T Consensus 205 nL~wla~~~a~-~~ie----tsgarc~~p~rl~~~Ri~q~~a~kf~c~-----~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 205 NLPWLADDLAM-NPIE----TSGARCVSPYRLYYKRINQEDARKFLCS-----LESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred ccchhhhHHhh-chhh----cccceecchHHHHHHHhcccchhhhhhh-----HHhHHHhhccccCcCCcChHHHHhhcc
Confidence 22222111000 0000 0000000 000000000000000000 000000000111111122234477899
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
+|+.+++++|.++++-+.+|....++++|++.+|++...-..+|.++.+|+.|+|++|+|+-..|-.|+.+..|.+|++-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 99999999999998999999999999999999999985555788999999999999999998889999999999999999
Q ss_pred CCcccc
Q 048417 409 NNNLTG 414 (453)
Q Consensus 409 ~n~l~~ 414 (453)
.|++..
T Consensus 355 ~Np~~C 360 (498)
T KOG4237|consen 355 SNPFNC 360 (498)
T ss_pred cCcccC
Confidence 988763
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=168.28 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=98.7
Q ss_pred cccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCC
Q 048417 135 KWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGE 214 (453)
Q Consensus 135 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 214 (453)
+|++|++++|.++ .+|..+. ..|+.|++++|.+. .+|..+. .+|+.|++++|++..++..+. ++|+.|++++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 4455555555444 3333221 24555555555544 3333322 245555555555544332221 3455555555
Q ss_pred CcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhh
Q 048417 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
|.+.. +|..+ .+.|+.|++++|.+.. +|..+ .++|+.|++++|.++ .+|..+
T Consensus 293 N~Lt~-LP~~l---p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l-------------------- 344 (754)
T PRK15370 293 NSIRT-LPAHL---PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASL-------------------- 344 (754)
T ss_pred Ccccc-Ccccc---hhhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhh--------------------
Confidence 55532 22221 1245556666665543 22222 245666677666665 333221
Q ss_pred hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC
Q 048417 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
+++|+.|++++|+++ .+|..+. +.|+.|++++|.+. .+|..+.
T Consensus 345 --------------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 345 --------------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred --------------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence 123556666666555 3443332 45666666666665 4444332
Q ss_pred CCCCCEEEcCCCcCCCCCCccc----cCCCCCCEEEccCCccc
Q 048417 375 MRSLESIDFSLNQLSGEIPQSM----SSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~ 413 (453)
+.|+.|++++|++. .+|+.+ ..++.+..|++.+|++.
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 24666666666665 333322 23455666666666655
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=164.54 Aligned_cols=247 Identities=24% Similarity=0.299 Sum_probs=161.1
Q ss_pred CCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEec
Q 048417 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141 (453)
Q Consensus 62 ~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l 141 (453)
.+...|+++++.++..+..+ ..+|+.|++++|.+.......+++|++|++++|.+... +..+ .+.|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsL-P~~l------~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSI-PATL------PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccC-Chhh------hccccEEEC
Confidence 34677788777777665544 24678888888877766555566788888888777632 2211 346778888
Q ss_pred cCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccC
Q 048417 142 SGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENI 221 (453)
Q Consensus 142 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 221 (453)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++.++..+. ++|+.|++++|.+.. +
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-C
Confidence 888777 5565543 46788888888777 4555443 468888888887776554332 467777888777753 4
Q ss_pred chHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhcc
Q 048417 222 PTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASR 301 (453)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~ 301 (453)
|... .++|+.|.+++|.+.. +|..+ .++|+.|++++|++. .+|..+
T Consensus 320 P~~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--------------------------- 365 (754)
T PRK15370 320 PETL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--------------------------- 365 (754)
T ss_pred Cccc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh---------------------------
Confidence 4332 2577788888877765 44444 357888888887776 444321
Q ss_pred chhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccc----cCCCC
Q 048417 302 APLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV----GTMRS 377 (453)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l----~~l~~ 377 (453)
+++|+.|++++|.++ .+|..+. +.|+.|++++|++. .+|..+ ...+.
T Consensus 366 -------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 366 -------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQ 416 (754)
T ss_pred -------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence 234677888887776 4454443 35777888888777 555433 33467
Q ss_pred CCEEEcCCCcCC
Q 048417 378 LESIDFSLNQLS 389 (453)
Q Consensus 378 L~~L~l~~n~l~ 389 (453)
+..|++.+|++.
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 778888888776
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-18 Score=162.57 Aligned_cols=65 Identities=22% Similarity=0.115 Sum_probs=30.1
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC------CCchhhhcCCcccEEEcccCccC
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG------ELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
.|+++++.++.++......++..+...+.+++++++++.+.+ ..+..+..+++|+.|++++|.+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 344555555554443333444444445556666655554431 11123334445555555555444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-17 Score=156.07 Aligned_cols=271 Identities=21% Similarity=0.248 Sum_probs=157.0
Q ss_pred EEEccCCcCC-CCCCccccCCCcccEEEcCCCccccc----chhhHhhcCCCeEEEEccCCcccC-------CCcCccCC
Q 048417 17 TLGLRHCHLG-SRFPSWLYSQKHLNYLDLSYSGIIGT----IPNIFWSSASQIYVLDLSFNQIHG-------QIPNLTNA 84 (453)
Q Consensus 17 ~L~L~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~~~~-------~~~~l~~~ 84 (453)
.|+|..+.++ ......+..+++|+.++++++.++.. ++..+ ...++++.++++++.+.. ....+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3555555554 23334455566677777777665332 22222 345567777776665542 11234455
Q ss_pred CCCcEEEccCCccccccccc---c---ccCcEEECcCCCCCCchhhhhhhhhccc-CcccEEeccCCCCCCC----Cchh
Q 048417 85 AQLEVLSLGSNSFSIALPLI---S---SYLIELDFSNNSISGSIFHFICYRANEL-NKWQILYLSGNFLQGE----LPDC 153 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~~---~---~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~ 153 (453)
++|+.|++++|.+....... + +.|++|++++|.+.......+...+..+ ++|+.|++++|.+++. .+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 67777777777665322211 1 2377777777776654444555555556 7777777777776632 2234
Q ss_pred hhcCCcccEEEcccCccCCCC----CccccccccccEEEccCCccccc-----cccccccCCCCEEeCCCCcccccCchH
Q 048417 154 WMNYQNLMILDLSNNKFTGNL----PISLGSLISLQSLHLRKNNLCGT-----IHSLENCTALMTLDVGENELVENIPTW 224 (453)
Q Consensus 154 l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (453)
+..+..|++|++++|.+.+.. +..+...++|+.|++++|.+.+. ...+..+++|+.|++++|.+.+.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 455667777777777766321 12233445777777777776532 234556677888888887775533333
Q ss_pred HHhcc----CcceEEEecCCccccc----CchhhcCCCCccEEEccCCcCCCC----cccccccc-cccceeccccC
Q 048417 225 IRERF----SRIVVLILRSNKFYNL----LPKELCDLAFLQIVDLADNNLSGE----VPRCIHNL-RAMVTMNSHAG 288 (453)
Q Consensus 225 ~~~~~----~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~l~i~~~ 288 (453)
+...+ +.|+.|++.+|.++.. +...+..++.|+++++++|.+... +...+... +.++.+++.++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 33332 6788888888877522 233455567888888888888743 33344444 56666665554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-16 Score=123.60 Aligned_cols=161 Identities=24% Similarity=0.409 Sum_probs=101.6
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
.+..++.|.+++|.++. .|..++.+.+|+.|++.+|++. ++|..+++++.|+.|++.-+...
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------------- 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------------- 92 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh----------------
Confidence 35667777888888765 4556788888888888888887 88888877777666654433211
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC-cCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCC
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 386 (453)
.....++++|-|+.||++.|++.+ ..|..|..+..|+-|++++|.+. .+|..++.+++|+.|.+..|
T Consensus 93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred -----------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 112333445556666666665542 45555555666666666666665 56666666666666666666
Q ss_pred cCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 387 QLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 387 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+. ..|..+..+..|++|.+++|.++-.+|++
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 665 55666666666666666666666545544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-16 Score=123.17 Aligned_cols=156 Identities=28% Similarity=0.414 Sum_probs=106.7
Q ss_pred ccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEE
Q 048417 33 LYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELD 112 (453)
Q Consensus 33 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 112 (453)
+.++.+.+.|.+++|+++ .+|..+ +.+.+|+.|++++|+++..+..+..+++|+.|+++-|.+..
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~------------- 93 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI------------- 93 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-------------
Confidence 455677888889999984 444444 77888999999999998888888888888888888776552
Q ss_pred CcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC-CCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccC
Q 048417 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ-GELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191 (453)
Q Consensus 113 l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 191 (453)
++..|+.+|.|+.||+++|.+. ..+|..|..+..|+.|.+++|++. ..|..++++.+||.|.+++
T Consensus 94 -------------lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 94 -------------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred -------------CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeecc
Confidence 2333445666666666666654 245555666666666666666666 5566666666666666666
Q ss_pred CccccccccccccCCCCEEeCCCCcc
Q 048417 192 NNLCGTIHSLENCTALMTLDVGENEL 217 (453)
Q Consensus 192 ~~~~~~~~~~~~~~~L~~L~l~~~~~ 217 (453)
|.+...+..++.+..|+.|.+.+|.+
T Consensus 160 ndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 160 NDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred CchhhCcHHHHHHHHHHHHhccccee
Confidence 66665555566666666666666655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-12 Score=118.42 Aligned_cols=235 Identities=21% Similarity=0.191 Sum_probs=162.2
Q ss_pred EEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCc-hhhhcCCcccEEEcccCccCCC--CCccccccccccE
Q 048417 110 ELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELP-DCWMNYQNLMILDLSNNKFTGN--LPISLGSLISLQS 186 (453)
Q Consensus 110 ~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~ 186 (453)
.+.+++-.+...+++.++..-+++.+|+.+.+.++.+..... .....+++++.|+++.|-+..- +......+|+|+.
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~ 176 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLEN 176 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchh
Confidence 344555566666677777777789999999999998873221 3567799999999999977621 2223457899999
Q ss_pred EEccCCcccccc--ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCC
Q 048417 187 LHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADN 264 (453)
Q Consensus 187 L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (453)
|+++.|++.... .....+++++.|.+++|.+......++...+|+++.|++..|...........-+..|++|++++|
T Consensus 177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 999999886433 233467899999999999987777788888999999999999532222233445678999999999
Q ss_pred cCCCCcc--cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC
Q 048417 265 NLSGEVP--RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342 (453)
Q Consensus 265 ~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 342 (453)
++. ..+ .....++.|..|++..+.+.+.....-+ ...-...+++|++|++..|++.+
T Consensus 257 ~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~--------------------s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 257 NLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE--------------------SLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccc-ccccccccccccchhhhhccccCcchhcCCCcc--------------------chhhhcccccceeeecccCcccc
Confidence 886 333 4567777887777777665544433111 11112345677888888777753
Q ss_pred c-CCccccCCCCCcEEEcCCccCC
Q 048417 343 K-IPLEVTNLKVLQSVNLSNNFFT 365 (453)
Q Consensus 343 ~-~~~~~~~~~~L~~L~l~~n~~~ 365 (453)
. ....+..+++|++|.+..|.+.
T Consensus 316 w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccchhhccchhhhhhccccccc
Confidence 2 1223445667777777776664
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-12 Score=114.50 Aligned_cols=245 Identities=23% Similarity=0.217 Sum_probs=126.7
Q ss_pred CcCCCcccEEEccCCcCCCC----CCccccCCCcccEEEcCCCc---ccccchhhH------hhcCCCeEEEEccCCccc
Q 048417 9 WIPPFQLATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSG---IIGTIPNIF------WSSASQIYVLDLSFNQIH 75 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~----~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~L~~L~ls~~~~~ 75 (453)
......+++++||+|.+... ..+.+.+.+.|+..++++-- ....+|..+ ...++.|++++||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34456777888888877443 33445666777777777642 223344332 234567777777777664
Q ss_pred C-CCc----CccCCCCCcEEEccCCccccccccccc-cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCC
Q 048417 76 G-QIP----NLTNAAQLEVLSLGSNSFSIALPLISS-YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE 149 (453)
Q Consensus 76 ~-~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 149 (453)
. .+. -+..+..|++|.+.+|++.......+. -|..|. ....+++.++|++++..+|++...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-------------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-------------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-------------HHhccCCCcceEEEEeeccccccc
Confidence 2 222 234556777777777766532221110 000000 111122344555555555554421
Q ss_pred ----CchhhhcCCcccEEEcccCccCCCCC----ccccccccccEEEccCCcccc-----ccccccccCCCCEEeCCCCc
Q 048417 150 ----LPDCWMNYQNLMILDLSNNKFTGNLP----ISLGSLISLQSLHLRKNNLCG-----TIHSLENCTALMTLDVGENE 216 (453)
Q Consensus 150 ----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~ 216 (453)
+...|...+.|+.+.+..|.+..... ..|..++.|+.|++++|.++. +...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 11223334455555555554431111 224455666666666665542 12455666677777777776
Q ss_pred ccccCchHHH----hccCcceEEEecCCccccc----CchhhcCCCCccEEEccCCcC
Q 048417 217 LVENIPTWIR----ERFSRIVVLILRSNKFYNL----LPKELCDLAFLQIVDLADNNL 266 (453)
Q Consensus 217 ~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 266 (453)
+.......+. ...|.|+++.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6544333322 3346677777777766432 122344466777777777776
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-12 Score=115.05 Aligned_cols=180 Identities=23% Similarity=0.234 Sum_probs=104.3
Q ss_pred CCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC---CcCccCCCCCcEEEccCCccccccc----ccccc
Q 048417 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ---IPNLTNAAQLEVLSLGSNSFSIALP----LISSY 107 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~ 107 (453)
++.+|+.+.|.++.............|++++.||+|.|-+..+ ..-...+++|+.|+++.|++..... ..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4556666666666552222113335667777777777655432 2223456677777777776654332 23567
Q ss_pred CcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCC--cccccccccc
Q 048417 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP--ISLGSLISLQ 185 (453)
Q Consensus 108 L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~ 185 (453)
|+.|.++.|.++.. .+...+..+|.|+.|++.+|............++.|++|+|++|.+.+ .+ ...+.++.|.
T Consensus 199 lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence 77777777777743 333334467888888888774322333334557778888888887662 22 2345677777
Q ss_pred EEEccCCcccccc-cc------ccccCCCCEEeCCCCccc
Q 048417 186 SLHLRKNNLCGTI-HS------LENCTALMTLDVGENELV 218 (453)
Q Consensus 186 ~L~l~~~~~~~~~-~~------~~~~~~L~~L~l~~~~~~ 218 (453)
.|+++.+.+..+. .. ...+++|+.|++..|.+.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 7777777665443 11 234455666666655553
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-12 Score=113.77 Aligned_cols=145 Identities=23% Similarity=0.233 Sum_probs=74.9
Q ss_pred ccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCC---CCCCCchhhhcCCcccEEEcccCccCCCCCccccccc
Q 048417 106 SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNF---LQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182 (453)
Q Consensus 106 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 182 (453)
.+++++++++|.+...-...++..+.+.+.|+..+++.-- ....+|..+.. ....+..+|
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~-----------------l~~aL~~~~ 92 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKM-----------------LSKALLGCP 92 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHH-----------------HHHHHhcCC
Confidence 4667777777777766666777777777777777776431 11122222111 112233445
Q ss_pred cccEEEccCCcccc-----ccccccccCCCCEEeCCCCcccccCchHHH------------hccCcceEEEecCCccccc
Q 048417 183 SLQSLHLRKNNLCG-----TIHSLENCTALMTLDVGENELVENIPTWIR------------ERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 183 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~ 245 (453)
+|++++|++|.+.. ....++++..|++|.+.+|.+.......+. .+-+.|+++....|++...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 56666666665432 113445566777777777765322111111 1234555555555554322
Q ss_pred C----chhhcCCCCccEEEccCCcCC
Q 048417 246 L----PKELCDLAFLQIVDLADNNLS 267 (453)
Q Consensus 246 ~----~~~~~~~~~L~~L~l~~~~~~ 267 (453)
. ...|...+.|+.+.++.|.+.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred cHHHHHHHHHhccccceEEEeccccc
Confidence 1 223444556666666665554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-11 Score=120.37 Aligned_cols=117 Identities=36% Similarity=0.651 Sum_probs=105.9
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
.++.|+++++.+.+..|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++.+.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC--cccceeecccCCCCC-ccCCCCCCCCC
Q 048417 409 NNNLTGKIPSS--TQLQSFDASSFSGND-LCRAPLSGNCS 445 (453)
Q Consensus 409 ~n~l~~~~~~~--~~l~~L~~l~l~~n~-l~~~~~~~~c~ 445 (453)
+|++++.+|.. ....++..+++.+|+ +|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999988865 223466788999999 99988766674
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-11 Score=100.46 Aligned_cols=109 Identities=28% Similarity=0.451 Sum_probs=43.4
Q ss_pred hcCcccEEecCCCcCCCcCCcccc-CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc-cCCCCCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVT-NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM-SSLKFLN 403 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 403 (453)
++.++++|++.++.++. + +.++ .+.+|+.|++++|.+. .+ +.+..++.|+.|++++|+++. +.+.+ ..+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 34568999999999973 3 3454 5789999999999998 44 458889999999999999994 44445 4689999
Q ss_pred EEEccCCcccc--cCCCCcccceeecccCCCCCccCCC
Q 048417 404 HLNLSNNNLTG--KIPSSTQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 404 ~L~l~~n~l~~--~~~~~~~l~~L~~l~l~~n~l~~~~ 439 (453)
+|++++|+|.. .+..+..+++|+.+++.|||+|..+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 99999999984 2334477899999999999998664
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=117.66 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=42.9
Q ss_pred CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEEEccCCccc----ccCCCCcccce
Q 048417 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHLNLSNNNLT----GKIPSSTQLQS 424 (453)
Q Consensus 350 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~l~~ 424 (453)
-.++|+.|++.+|...+.+......+..+..+.+..+.+.+. ......+++++..+.+..-.+. ...|..+.+|.
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 346777777777666545444445555555544444444433 2233334444444444332222 12455566777
Q ss_pred eecccCCCC
Q 048417 425 FDASSFSGN 433 (453)
Q Consensus 425 L~~l~l~~n 433 (453)
+..+.+.++
T Consensus 848 ~~~~~i~~~ 856 (889)
T KOG4658|consen 848 LSTLTIVGC 856 (889)
T ss_pred ccccceecc
Confidence 777766554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.7e-12 Score=117.54 Aligned_cols=105 Identities=31% Similarity=0.444 Sum_probs=56.4
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
.--...+++.|++. .+|..++.+..|+.+.+..|.+..++..+..+..|+.++++.|.+. ..|..++ .--|+.+.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEE
Confidence 33444566666666 5566666666666666666666666666666666666666666652 2444333 123444444
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCC
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLS 267 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 267 (453)
++|+++. +|..++....|..|+.+.|++.
T Consensus 151 sNNkl~~-lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 151 SNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred ecCcccc-CCcccccchhHHHhhhhhhhhh
Confidence 4444432 3333444444444444444443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-11 Score=101.66 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=50.7
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 405 (453)
+++|+.||+++|.++ ....|-..+-+.+.|.+++|.+.+. ..++.+-+|..||+++|+|.+. -.+.+..+|-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 455666666666665 4444555566666666666666522 3455566666666666666532 12355566666666
Q ss_pred EccCCccccc
Q 048417 406 NLSNNNLTGK 415 (453)
Q Consensus 406 ~l~~n~l~~~ 415 (453)
.+.+|++.+.
T Consensus 405 ~L~~NPl~~~ 414 (490)
T KOG1259|consen 405 RLTGNPLAGS 414 (490)
T ss_pred hhcCCCcccc
Confidence 6666666643
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=105.26 Aligned_cols=101 Identities=34% Similarity=0.476 Sum_probs=53.6
Q ss_pred EEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhcc-CcceEEEecCCcccccCchhhcCCCCccEEEccCC
Q 048417 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERF-SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADN 264 (453)
Q Consensus 186 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (453)
.+....+.+......+...+.++.+++.++.+.. ++.... .. ++|+.+++++|.+... +..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~-~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIG-LLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccc-cchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 4555555554444444444666777777666644 332221 23 2666666666666442 234556666666666666
Q ss_pred cCCCCcccccccccccceeccccCcc
Q 048417 265 NLSGEVPRCIHNLRAMVTMNSHAGKA 290 (453)
Q Consensus 265 ~~~~~~~~~~~~~~~L~~l~i~~~~~ 290 (453)
++. .++......+.+..++++++++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCcc
Confidence 665 4444443444444444444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-10 Score=92.55 Aligned_cols=125 Identities=25% Similarity=0.261 Sum_probs=33.3
Q ss_pred cCcccEEeccCCCCCCCCchhhh-cCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccc-cccCCCCEE
Q 048417 133 LNKWQILYLSGNFLQGELPDCWM-NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL-ENCTALMTL 210 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 210 (453)
..++++|+++++.++. + +.+. .+.+|+.|++++|.+... +.+..++.|+.|++++|.++.+.+.+ ..+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 4455666666666652 2 1233 355666666666666522 23555566666666666665543322 245566666
Q ss_pred eCCCCcccccCchHHHhccCcceEEEecCCcccccC---chhhcCCCCccEEEc
Q 048417 211 DVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL---PKELCDLAFLQIVDL 261 (453)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l 261 (453)
++++|.+...........+++|+.|++.+|++.... ...+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666665543222222234555555555555554321 112344555555543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-11 Score=113.21 Aligned_cols=193 Identities=27% Similarity=0.412 Sum_probs=150.9
Q ss_pred cccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
+.--...+++.|++.+++....-+..|+.+.++.|.+.. ++..+. .+..|+.++++.|.+.. .|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~-~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-IPEAIC-NLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-cchhhh-hhhHHHHhhhccchhhc-CChhhhcCc-ceeEE
Confidence 334456788888888888777667777878887777643 454443 57788888888888755 455666665 78888
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 340 (453)
+++|+++ .+|+.++. .+.|..||.+.|.+
T Consensus 150 ~sNNkl~-~lp~~ig~--------------------------------------------------~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL--------------------------------------------------LPTLAHLDVSKNEI 178 (722)
T ss_pred EecCccc-cCCccccc--------------------------------------------------chhHHHhhhhhhhh
Confidence 8888887 66766553 33467788888888
Q ss_pred CCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-
Q 048417 341 SGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS- 419 (453)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~- 419 (453)
. ..|..+..+.+|+.|++..|.+. .+|+.+..++ |..||++.|++. .+|-+|.+|..|++|-|.+|.++. +|..
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence 7 77888999999999999999998 7787787666 999999999999 899999999999999999999994 4533
Q ss_pred ---cccceeecccCCCC
Q 048417 420 ---TQLQSFDASSFSGN 433 (453)
Q Consensus 420 ---~~l~~L~~l~l~~n 433 (453)
+..+=.++|+.+-+
T Consensus 254 C~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 254 CEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Hhccceeeeeeecchhc
Confidence 66777888888765
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-09 Score=104.74 Aligned_cols=193 Identities=28% Similarity=0.282 Sum_probs=103.8
Q ss_pred EEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCC-CCcEEEccCCccccc--cccccccCcEEECcCCC
Q 048417 41 YLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAA-QLEVLSLGSNSFSIA--LPLISSYLIELDFSNNS 117 (453)
Q Consensus 41 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~--~~~~~~~L~~L~l~~~~ 117 (453)
.+++..+.+....... ...+.++.|++.++.++..++...... +|+.|++++|.+... ....++.|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~--~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISEL--LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhh--hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3555555542222222 233556666666666665555555553 666666666666554 33445666666666666
Q ss_pred CCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccc
Q 048417 118 ISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT 197 (453)
Q Consensus 118 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 197 (453)
+...... ....+.|+.|++++|+++ .+|........|+++.+++|... ..+..+..+.++..+.+.+|++...
T Consensus 175 l~~l~~~-----~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 175 LSDLPKL-----LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred hhhhhhh-----hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec
Confidence 5532221 113566666666666666 44443344455666666666433 2333455556666666666665544
Q ss_pred cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 198 IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
...+..++.++.|++++|.+..... .....+++.++++++.+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cchhccccccceecccccccccccc---ccccCccCEEeccCcccccc
Confidence 5555556666666666666544222 23455666666666655433
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-10 Score=100.26 Aligned_cols=128 Identities=29% Similarity=0.289 Sum_probs=80.1
Q ss_pred CCCCCcEEEccCCccccccc--cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 83 NAAQLEVLSLGSNSFSIALP--LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
.+.-|..+++++|.++.... ...|.++.|++++|.+.... .++.+++|+.||+++|.++ .+..+=.++-++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 33467777888777764332 23567777777777665321 1334777777777777776 333444556677
Q ss_pred cEEEcccCccCCCCCccccccccccEEEccCCcccccc--ccccccCCCCEEeCCCCcccc
Q 048417 161 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVE 219 (453)
Q Consensus 161 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 219 (453)
++|++.+|.+... ..+.++-+|.+|++++|++..+. ..++.++-|+++.+.+|.+..
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777777776522 33556666777777777776554 556666666666666665533
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-09 Score=113.07 Aligned_cols=130 Identities=18% Similarity=0.079 Sum_probs=80.5
Q ss_pred chhhhhcCcccEEecCCCcCCCcCCcccc-----C-CCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc
Q 048417 321 AKYERTLNLVRIIDFSKNNFSGKIPLEVT-----N-LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ 394 (453)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 394 (453)
......+.+|+.|.+.++.+.+....+.. . ++++..+.+.+|... ..+.+....++|+.|.+.+++..+.+..
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCC
Confidence 33445677888899888877533222211 1 345555566666544 4444455678999999999988777666
Q ss_pred cccCCCCCCEEEccCCccccc--CCCCcccceeecccCCCCCccCCCCCCCCCCCccCCC
Q 048417 395 SMSSLKFLNHLNLSNNNLTGK--IPSSTQLQSFDASSFSGNDLCRAPLSGNCSEHVSIPK 452 (453)
Q Consensus 395 ~l~~l~~L~~L~l~~n~l~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~~~~ 452 (453)
....+..++++-+..+.+.+. +...+.++++.++.+.+-.+...... .|++..++|.
T Consensus 789 ~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve-~~p~l~~~P~ 847 (889)
T KOG4658|consen 789 KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVE-ECPKLGKLPL 847 (889)
T ss_pred HHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehh-cCcccccCcc
Confidence 677777777766766766654 45556677766666655432222222 2666665553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=74.35 Aligned_cols=61 Identities=43% Similarity=0.558 Sum_probs=36.5
Q ss_pred CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcc
Q 048417 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 412 (453)
|+|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666633335556666666666666666655555666666666666666653
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-09 Score=71.81 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=55.9
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcC
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 388 (453)
|+|++|++++|+++...+.+|..+++|++|++++|.+....+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5699999999999977778999999999999999999977778999999999999999975
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=102.14 Aligned_cols=95 Identities=31% Similarity=0.509 Sum_probs=82.4
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCC-CCC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSL-KFL 402 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L 402 (453)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.++.+++|+.|++++|.+.+.+|..+... .++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 3456778999999999998999999999999999999999999999999999999999999999999999887764 467
Q ss_pred CEEEccCCcccccCCC
Q 048417 403 NHLNLSNNNLTGKIPS 418 (453)
Q Consensus 403 ~~L~l~~n~l~~~~~~ 418 (453)
..+++.+|...+..|.
T Consensus 518 ~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 518 ASFNFTDNAGLCGIPG 533 (623)
T ss_pred ceEEecCCccccCCCC
Confidence 8899999976544444
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-09 Score=104.96 Aligned_cols=218 Identities=21% Similarity=0.240 Sum_probs=94.4
Q ss_pred cccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccE
Q 048417 179 GSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQI 258 (453)
Q Consensus 179 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 258 (453)
..+.++..+++.+|.+..+...+..+++|++|++++|.|.+..+. ..++.|+.|++.+|.+... ..+..++.|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheeccCcchhc--cCCccchhhhc
Confidence 344444444444444444333344444555555555544332221 1233355555555554332 12333555555
Q ss_pred EEccCCcCCCCcc-cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCC
Q 048417 259 VDLADNNLSGEVP-RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSK 337 (453)
Q Consensus 259 L~l~~~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (453)
+++++|.+....+ . ...+.+++.+.+.++.+......... ..+..+++..
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~----------------------------~~l~~~~l~~ 217 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLL----------------------------KKLVLLSLLD 217 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHH----------------------------HHHHHhhccc
Confidence 5555555542222 1 34444444444444443333322111 1122224444
Q ss_pred CcCCCcCCccccCCC--CCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 338 NNFSGKIPLEVTNLK--VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 338 ~~l~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
|.++...+. .... +|+.+++++|++. ..++.+..+..+..+++..|++... +.+...+.+..+....|.+...
T Consensus 218 n~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 218 NKISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred ccceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcch
Confidence 444321111 1111 2556666666555 3334445555566666665555422 2344444555555555544411
Q ss_pred ---C--CCCcccceeecccCCCCCc
Q 048417 416 ---I--PSSTQLQSFDASSFSGNDL 435 (453)
Q Consensus 416 ---~--~~~~~l~~L~~l~l~~n~l 435 (453)
. +.....+++...++.+||+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred hhhhccccccccccccccccccCcc
Confidence 1 1124445555555555553
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.4e-09 Score=89.57 Aligned_cols=206 Identities=21% Similarity=0.133 Sum_probs=134.8
Q ss_pred CCcccEEEcCCCcccccch-hhHhhcCCCeEEEEccCCcccCC---CcCccCCCCCcEEEccCCccccccccc---cccC
Q 048417 36 QKHLNYLDLSYSGIIGTIP-NIFWSSASQIYVLDLSFNQIHGQ---IPNLTNAAQLEVLSLGSNSFSIALPLI---SSYL 108 (453)
Q Consensus 36 ~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~ls~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L 108 (453)
..-++-+.+.++.+.+... ..+...+..++++||.+|.++.+ ..-+.+++.|+.|+++.|.+...+... ..+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3344566666666644333 23345678888999999888753 334678888999999999887655443 3588
Q ss_pred cEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC--CCchhhhc-CCcccEEEcccCccC--CCCCcccccccc
Q 048417 109 IELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG--ELPDCWMN-YQNLMILDLSNNKFT--GNLPISLGSLIS 183 (453)
Q Consensus 109 ~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~ 183 (453)
+.|.+.+..+.....+. .+..+|+++.|+++.|.+.. ........ -+.++++...+|... ....+.-..+|+
T Consensus 124 ~~lVLNgT~L~w~~~~s---~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTS---SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EEEEEcCCCCChhhhhh---hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 88988888877544433 34578999999999884331 11111111 235666776666443 111111223578
Q ss_pred ccEEEccCCcccccc--ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccc
Q 048417 184 LQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN 244 (453)
Q Consensus 184 L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 244 (453)
+..+.+.+|.+.... +....++.+-.|+++.+++.+.........++.|..|.+.++++.+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 888888888776544 5566677777888888888776666666678888888888887644
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-09 Score=104.68 Aligned_cols=111 Identities=27% Similarity=0.379 Sum_probs=91.0
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCc-cccCCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE-SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNH 404 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 404 (453)
-++.|+.|++++|++++ ...+..+++|++|+|++|++. .+|. ...++. |..|.+++|.++.. .++.++.+|+.
T Consensus 185 ll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence 35779999999999974 337889999999999999998 6663 234455 99999999998833 67889999999
Q ss_pred EEccCCcccc--cCCCCcccceeecccCCCCCccCCCCCC
Q 048417 405 LNLSNNNLTG--KIPSSTQLQSFDASSFSGNDLCRAPLSG 442 (453)
Q Consensus 405 L~l~~n~l~~--~~~~~~~l~~L~~l~l~~n~l~~~~~~~ 442 (453)
||+++|-+.+ .+..+-.+..|++|++.|||+|=.|+++
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hR 298 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHR 298 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHH
Confidence 9999998874 2334467889999999999999888765
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8e-10 Score=95.42 Aligned_cols=177 Identities=24% Similarity=0.155 Sum_probs=84.8
Q ss_pred cccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEEEccCCc-cccc----cccccccCcEE
Q 048417 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVLSLGSNS-FSIA----LPLISSYLIEL 111 (453)
Q Consensus 38 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~----~~~~~~~L~~L 111 (453)
+|+++||+...++...-..+...|..|+.|.+.++++.+ +...+.+..+|+.|+++.+. ++.. ....+++|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355666665555444444444555666666666665554 23344555556666665542 2221 12234556666
Q ss_pred ECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC---CCCchhhhcCCcccEEEcccCcc-CCCCCccccccccccEE
Q 048417 112 DFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ---GELPDCWMNYQNLMILDLSNNKF-TGNLPISLGSLISLQSL 187 (453)
Q Consensus 112 ~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L 187 (453)
+++.|.+.......+...+ -++|..|+++|++-. ..+.--...+++|.+|+++++.. +...-..|.+++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 6666655543333222222 345556666655321 01111123456666666666532 21111224455666666
Q ss_pred EccCCccc--cccccccccCCCCEEeCCCCc
Q 048417 188 HLRKNNLC--GTIHSLENCTALMTLDVGENE 216 (453)
Q Consensus 188 ~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 216 (453)
.++.|-.. ...-.+...+++.+|++-|+.
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 66655321 111334555666666666553
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.3e-09 Score=89.63 Aligned_cols=150 Identities=20% Similarity=0.152 Sum_probs=64.3
Q ss_pred CeEEEEccCCcccC--CCcCccCCCCCcEEEccCCccccccccc---cccCcEEECcCC-CCCCchhhhhhhhhcccCcc
Q 048417 63 QIYVLDLSFNQIHG--QIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNN-SISGSIFHFICYRANELNKW 136 (453)
Q Consensus 63 ~L~~L~ls~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~L 136 (453)
+|+++|||+..++. ....+..|.+|+.|.+.++.+...+... -..|+.|+++.+ .++..... ..+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ---LLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH---HHHHhhhhH
Confidence 45555555555542 2333445555555555555554433222 124555555544 23322111 222345555
Q ss_pred cEEeccCCCCCCCCc-hhh-hcCCcccEEEcccCccC--C-CCCccccccccccEEEccCCcc-cc-ccccccccCCCCE
Q 048417 137 QILYLSGNFLQGELP-DCW-MNYQNLMILDLSNNKFT--G-NLPISLGSLISLQSLHLRKNNL-CG-TIHSLENCTALMT 209 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~~~~~--~-~~~~~l~~l~~L~~L~l~~~~~-~~-~~~~~~~~~~L~~ 209 (453)
+.|+++.|......- ..+ .--..|+.|+++|+.-. . .+.....++|+|..||+++|.- .. ....+..++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 555555554431110 000 11234555555554221 0 0001123455555555555432 11 1133444555555
Q ss_pred EeCCCC
Q 048417 210 LDVGEN 215 (453)
Q Consensus 210 L~l~~~ 215 (453)
|.++.|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 555555
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-08 Score=94.39 Aligned_cols=219 Identities=22% Similarity=0.295 Sum_probs=152.2
Q ss_pred ccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEE
Q 048417 180 SLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIV 259 (453)
Q Consensus 180 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 259 (453)
.+..++.+.++.|.+......+..+.+++.+++.+|.+...... .+.+++|+++++++|.+.... .+..+..|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheecccccccccc--chhhccchhhh
Confidence 34555666677777766556677889999999999998653331 246889999999999997753 35566779999
Q ss_pred EccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc
Q 048417 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN 339 (453)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (453)
++.+|.+. .+ ..+..+..++.+++..+.+...... . ...+.+++.+++.+|.
T Consensus 146 ~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~-------------------------~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 146 NLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVDIEND-------------------------E-LSELISLEELDLGGNS 197 (414)
T ss_pred eeccCcch-hc-cCCccchhhhcccCCcchhhhhhhh-------------------------h-hhhccchHHHhccCCc
Confidence 99999986 32 2344467777777776654433331 1 2446678888888887
Q ss_pred CCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCC--CCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 048417 340 FSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR--SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 340 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 417 (453)
+.. ...+..+..+..+++..|.+...- .+..+. +|+.+++++|++. ..++.+..+..+..|++.+|.+. ...
T Consensus 198 i~~--i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~ 271 (414)
T KOG0531|consen 198 IRE--IEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLE 271 (414)
T ss_pred hhc--ccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc-ccc
Confidence 752 223344455556678888776331 222333 3899999999998 44477888899999999999888 466
Q ss_pred CCcccceeecccCCCCCcc
Q 048417 418 SSTQLQSFDASSFSGNDLC 436 (453)
Q Consensus 418 ~~~~l~~L~~l~l~~n~l~ 436 (453)
.......+.++....|++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccchHHHhccCcchhc
Confidence 6777778888888888743
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-07 Score=80.61 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=56.9
Q ss_pred hcccCcccEEeccCCCCCCCCch-----hhhcCCcccEEEcccCccCCCCCc-----cccccccccEEEccCCcccccc-
Q 048417 130 ANELNKWQILYLSGNFLQGELPD-----CWMNYQNLMILDLSNNKFTGNLPI-----SLGSLISLQSLHLRKNNLCGTI- 198 (453)
Q Consensus 130 ~~~~~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~- 198 (453)
.++-|.|+.+++.+|++. ..+. .+..-..|+++.+..|.|...... .+..+.+|+.|++++|.++...
T Consensus 153 aa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 153 AADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred hccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 345788888888888876 3332 223335788888888877622111 1234567778888877765322
Q ss_pred ----ccccccCCCCEEeCCCCcccccCchHH
Q 048417 199 ----HSLENCTALMTLDVGENELVENIPTWI 225 (453)
Q Consensus 199 ----~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (453)
..+..++.|+.|.+..|-+.......+
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHH
Confidence 344555666777777776654444333
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-08 Score=95.30 Aligned_cols=127 Identities=29% Similarity=0.256 Sum_probs=64.6
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccE
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 186 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 186 (453)
.|...+.++|.+. .+-..+.-++.++.|+|++|++++. +.+..++.|++|+++.|.+. .+|..=..-.+|+.
T Consensus 165 ~L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQL 236 (1096)
T ss_pred hHhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhhee
Confidence 4555555555443 2222223356666666666666532 24556666666666666665 33321111123666
Q ss_pred EEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 187 LHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 187 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
|.+++|.++. ...+.++.+|+.||++.|-+.+.-.-.....+..|+.|++.+|++
T Consensus 237 L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666665542 234445566666666666554432222222345566666666654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=74.48 Aligned_cols=189 Identities=15% Similarity=0.088 Sum_probs=122.8
Q ss_pred cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhh-------------hcCCcccEEEcccCccC
Q 048417 105 SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW-------------MNYQNLMILDLSNNKFT 171 (453)
Q Consensus 105 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~~~~ 171 (453)
+|+|+..+++.|.+....+..+...+++...|.+|.+++|.+-..-...+ ..-+.|+++...+|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 46777888888888777778888888888899999998887652111111 22477889998888876
Q ss_pred CCCCcc-----ccccccccEEEccCCccccc--c----ccccccCCCCEEeCCCCcccccCchHH---HhccCcceEEEe
Q 048417 172 GNLPIS-----LGSLISLQSLHLRKNNLCGT--I----HSLENCTALMTLDVGENELVENIPTWI---RERFSRIVVLIL 237 (453)
Q Consensus 172 ~~~~~~-----l~~l~~L~~L~l~~~~~~~~--~----~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l 237 (453)
..+.. +..-..|..+.+..|.|..- . ..+..+.+|+.||+..|.++....... ...++.|+.|.+
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 33322 22224688888888877532 1 334567889999999988765433222 234567888888
Q ss_pred cCCcccccCchhh------cCCCCccEEEccCCcCCCCccc-------ccccccccceeccccCcchhhh
Q 048417 238 RSNKFYNLLPKEL------CDLAFLQIVDLADNNLSGEVPR-------CIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 238 ~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
..|-.+......+ ...++|..|-..+|.+.+.+.. .-.++|-|..+.+.++.+....
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 8887765443322 1346778888877776543322 1245667777777776654433
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-06 Score=75.63 Aligned_cols=225 Identities=20% Similarity=0.220 Sum_probs=123.6
Q ss_pred cccEEEcccCccCCCCCc-ccc-ccccccEEEccCCcccccc---ccccccCCCCEEeCCCCcccccCchHHHhccCcce
Q 048417 159 NLMILDLSNNKFTGNLPI-SLG-SLISLQSLHLRKNNLCGTI---HSLENCTALMTLDVGENELVENIPTWIRERFSRIV 233 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 233 (453)
-++.+.+.++.+...... .|+ ....++.+++.+|.+..+. ..+..++++++|+++.|.+...+.. ......+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceE
Confidence 344455556655422111 122 3455777777777776554 3456677777777777766432221 112355677
Q ss_pred EEEecCCccccc-CchhhcCCCCccEEEccCCcCCC--Ccccccccc-cccceeccccCcchhhhhhhhhccchhhhhhh
Q 048417 234 VLILRSNKFYNL-LPKELCDLAFLQIVDLADNNLSG--EVPRCIHNL-RAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309 (453)
Q Consensus 234 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 309 (453)
+|.+.+..+.-. ....+..++.+++|.++.|.... ....+...+ +.+++++...|....+...
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~------------- 191 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK------------- 191 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH-------------
Confidence 777766554211 12234456666777776663321 111122222 2444444444432222211
Q ss_pred hhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcC-CccccCCCCCcEEEcCCccCCCCC-CccccCCCCCCEEEcCCCc
Q 048417 310 EDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKI-PLEVTNLKVLQSVNLSNNFFTGRI-PESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~ 387 (453)
......+|++..+.+..|.+..+. ......+|.+.-|+++.+++.+.. ...+..+++|+.|.+++++
T Consensus 192 -----------~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 192 -----------NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred -----------HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 111234677888888888765332 233445677778889888887322 2567888999999999998
Q ss_pred CCCCCCc------cccCCCCCCEEEcc
Q 048417 388 LSGEIPQ------SMSSLKFLNHLNLS 408 (453)
Q Consensus 388 l~~~~~~------~l~~l~~L~~L~l~ 408 (453)
+.+.+.. .+..+++++.|+=+
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecCc
Confidence 8754321 23457777777654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.5e-08 Score=87.30 Aligned_cols=293 Identities=18% Similarity=0.123 Sum_probs=129.7
Q ss_pred CeEEEEccCCcccC---CCcCccCCCCCcEEEccCCcccc-----ccccccccCcEEECcCC-CCCCchhhhhhhhhccc
Q 048417 63 QIYVLDLSFNQIHG---QIPNLTNAAQLEVLSLGSNSFSI-----ALPLISSYLIELDFSNN-SISGSIFHFICYRANEL 133 (453)
Q Consensus 63 ~L~~L~ls~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~ 133 (453)
.|+.|.+++++-.. .-....+++++++|++.+|.... .....+++++.+++..| .++....+.++ ..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la---~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA---EGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH---Hhh
Confidence 46666666664322 12223455666666666654221 11222445666666553 33332222222 246
Q ss_pred CcccEEeccCCCCC-C-CCchhhhcCCcccEEEcccCccCCCCCccc----cccccccEEEccCCcc-cccc--cccccc
Q 048417 134 NKWQILYLSGNFLQ-G-ELPDCWMNYQNLMILDLSNNKFTGNLPISL----GSLISLQSLHLRKNNL-CGTI--HSLENC 204 (453)
Q Consensus 134 ~~L~~L~l~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~-~~~~--~~~~~~ 204 (453)
++|++++++.+.-. + -+...+.++..++.+.+.||.=. ..+.+ ..++.+.++++.+|.. +... ..-..+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 66666666665322 1 01122344445555555544211 00111 2233444555444422 2111 222345
Q ss_pred CCCCEEeCCCCc-ccccCchHHHhccCcceEEEecCCcc-cccCchhh-cCCCCccEEEccCCcCCCCcccccccccccc
Q 048417 205 TALMTLDVGENE-LVENIPTWIRERFSRIVVLILRSNKF-YNLLPKEL-CDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 281 (453)
Q Consensus 205 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 281 (453)
..++.++.+++. +.+.....+.+..++|+.+.+..|.. +......+ .+++.|+.+++.++...... .+
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL------- 364 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TL------- 364 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hH-------
Confidence 556666666553 22223333344555666666665542 11111111 23455555555554432000 00
Q ss_pred eeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC-CCcC----CccccCCCCCcE
Q 048417 282 TMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF-SGKI----PLEVTNLKVLQS 356 (453)
Q Consensus 282 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~----~~~~~~~~~L~~ 356 (453)
......++.|+.+.++++.. ++.. ...-..+..|+.
T Consensus 365 ---------------------------------------~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 365 ---------------------------------------ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred ---------------------------------------hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 01112355566666666543 1110 111123456677
Q ss_pred EEcCCccCCC-CCCccccCCCCCCEEEcCCCcCCC--CCCccccCCCCCCEEEcc
Q 048417 357 VNLSNNFFTG-RIPESVGTMRSLESIDFSLNQLSG--EIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 357 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~ 408 (453)
+.++++.... ...+.+..+++|+.+++.+++-.. .+...-..+|++++..+.
T Consensus 406 lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 406 LELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred eeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 7777765442 223445666777777777665321 122333456666655543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-06 Score=53.12 Aligned_cols=37 Identities=43% Similarity=0.719 Sum_probs=22.2
Q ss_pred CCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc
Q 048417 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 376 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 413 (453)
++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 44445666666666666666666
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.3e-06 Score=68.76 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=54.7
Q ss_pred CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc--ccCCCCcccceeeccc
Q 048417 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT--GKIPSSTQLQSFDASS 429 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~ 429 (453)
.....+++++|.+. .+ ..|..++.|..|.+..|+|+.+.|..-..+|+|+.|.+.+|.|. +.+..+..+++|+.+.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34556677777665 22 24566777777777777777555555555667777777777666 3455556666777777
Q ss_pred CCCCCccCC
Q 048417 430 FSGNDLCRA 438 (453)
Q Consensus 430 l~~n~l~~~ 438 (453)
+-+||++..
T Consensus 120 ll~Npv~~k 128 (233)
T KOG1644|consen 120 LLGNPVEHK 128 (233)
T ss_pred ecCCchhcc
Confidence 777766544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-06 Score=84.08 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCcEEEccCCcccc-cc----ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 86 QLEVLSLGSNSFSI-AL----PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 86 ~L~~L~l~~~~~~~-~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+|++|++++...-. .+ ...+|+|+.|.+.+-.+.... +.....++|+|..||++++.++.. ..++.+++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 67777777654322 11 223678888888877665433 334445788888888888888733 557778888
Q ss_pred cEEEcccCccCC-CCCccccccccccEEEccCCcccccc-------ccccccCCCCEEeCCCCcccccCchHHHhccCcc
Q 048417 161 MILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLCGTI-------HSLENCTALMTLDVGENELVENIPTWIRERFSRI 232 (453)
Q Consensus 161 ~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 232 (453)
+.|.+.+=.+.. ..-..+..+.+|+.||++..+..... +.-..+++|+.||.+++.+.......+...-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 888887766652 11123556788888888876543322 2234578888888888887766665555555666
Q ss_pred eEEEec
Q 048417 233 VVLILR 238 (453)
Q Consensus 233 ~~L~l~ 238 (453)
+.+..-
T Consensus 278 ~~i~~~ 283 (699)
T KOG3665|consen 278 QQIAAL 283 (699)
T ss_pred hhhhhh
Confidence 655543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.2e-07 Score=70.33 Aligned_cols=84 Identities=27% Similarity=0.452 Sum_probs=64.0
Q ss_pred CcccEEecCCCcCCCcCCcccc-CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVT-NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
..|+..++++|.+. ..|..|. .++.++.|++++|.+. .+|+.+..++.|+.|+++.|.+. ..|+.+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34666778888776 4554444 4567888888888888 77777888888888888888888 6677777788888888
Q ss_pred ccCCcccc
Q 048417 407 LSNNNLTG 414 (453)
Q Consensus 407 l~~n~l~~ 414 (453)
..+|.+..
T Consensus 130 s~~na~~e 137 (177)
T KOG4579|consen 130 SPENARAE 137 (177)
T ss_pred CCCCcccc
Confidence 88887763
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.2e-05 Score=81.36 Aligned_cols=134 Identities=19% Similarity=0.119 Sum_probs=75.4
Q ss_pred CcccEEEccCCcCC-CCCCccc-cCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 13 FQLATLGLRHCHLG-SRFPSWL-YSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 13 ~~L~~L~L~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
.+|++||+++...- ..++..+ .-+|.|++|.+++-.+...--..+..++++|+.||+|+++++.. .++.++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35777777775542 2223333 35678888888776653333334456778888888888877754 566677777777
Q ss_pred EccCCcccccc--c--cccccCcEEECcCCCCCCch--hhhhhhhhcccCcccEEeccCCCCC
Q 048417 91 SLGSNSFSIAL--P--LISSYLIELDFSNNSISGSI--FHFICYRANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 91 ~l~~~~~~~~~--~--~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~ 147 (453)
.+.+-.+.... . ..+++|+.||+|........ .....+.-..+|+|+.||++++.++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77665554311 1 12456666666665433222 1111111123566666666665554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=49.25 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=22.6
Q ss_pred CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
++|+.|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 45555666667777777766665
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.5e-06 Score=65.52 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=49.4
Q ss_pred ccCcccEEeccCCCCCCCCchhh-hcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCW-MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTL 210 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 210 (453)
....|...++++|.+. .+|..| .+++.++++++++|.+. .+|..+..++.|+.|+++.|.+...++.+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3445555666666665 334333 33456666666666666 45555666666666666666666555555555555556
Q ss_pred eCCCCcc
Q 048417 211 DVGENEL 217 (453)
Q Consensus 211 ~l~~~~~ 217 (453)
+..++.+
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 6555554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.3e-06 Score=79.37 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=134.9
Q ss_pred CcccEEEcccCccCCCCC--ccccccccccEEEccCCcc-cccc--ccccccCCCCEEeCCCC-cccccCchHHHhccCc
Q 048417 158 QNLMILDLSNNKFTGNLP--ISLGSLISLQSLHLRKNNL-CGTI--HSLENCTALMTLDVGEN-ELVENIPTWIRERFSR 231 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~-~~~~--~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~ 231 (453)
..|+.|.++|+.-....+ .....+|+++.|.+.++.. ++.. ..-..|..++++++..| .++......+.+.+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356777777764331111 1223567777777766642 2211 22345667777777774 4444444445566777
Q ss_pred ceEEEecCCcc-ccc-CchhhcCCCCccEEEccCCcCCCCccccc----ccccccceeccccCcchhhhhhhhhccchhh
Q 048417 232 IVVLILRSNKF-YNL-LPKELCDLAFLQIVDLADNNLSGEVPRCI----HNLRAMVTMNSHAGKAIQYQFLLYASRAPLI 305 (453)
Q Consensus 232 L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~ 305 (453)
|++++++-|+. .+. +...+..++.++.+..+||.-. ..+.+ ..+..+..+++..|..++....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--------- 286 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDL--------- 286 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHH---------
Confidence 77777776653 221 1223445555666666654311 11111 2223344444444432222221
Q ss_pred hhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC-CCcCCccc-cCCCCCcEEEcCCccC-CCCCCccc-cCCCCCCEE
Q 048417 306 ATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF-SGKIPLEV-TNLKVLQSVNLSNNFF-TGRIPESV-GTMRSLESI 381 (453)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~-~~~~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L 381 (453)
...-..+..|+.++.+++.- ++..-..+ .++++|+.|-+++|+. ++.-...+ .+++.|+.+
T Consensus 287 ---------------~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 287 ---------------WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred ---------------HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 11112355677777766532 22222222 3567788888887763 22211222 456778888
Q ss_pred EcCCCcCCCC--CCccccCCCCCCEEEccCCcccccC------CCCcccceeecccCCCCC-ccCCCCC--CCCCCCcc
Q 048417 382 DFSLNQLSGE--IPQSMSSLKFLNHLNLSNNNLTGKI------PSSTQLQSFDASSFSGND-LCRAPLS--GNCSEHVS 449 (453)
Q Consensus 382 ~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~------~~~~~l~~L~~l~l~~n~-l~~~~~~--~~c~~~~~ 449 (453)
++.++..... +-+.-..++.|+.+.+++|...... .....+..|..++++++| +++.-++ ..|+.+++
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 8877754411 2223345777888888877644221 122566777778887777 4443322 24555444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.8e-05 Score=61.86 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=34.4
Q ss_pred ccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC--CCcCccCCCCCcEEEc
Q 048417 15 LATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG--QIPNLTNAAQLEVLSL 92 (453)
Q Consensus 15 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~~~l~~~~~L~~L~l 92 (453)
...+||+.|.+... +.|..+++|.+|.+++|+| ..+...+...+++|..|.+.+|.+.. ....+..+++|++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrI-t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRI-TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcc-eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 33444444444211 2234444455555555554 22222222334445555555544432 2334444444554444
Q ss_pred cCCccc
Q 048417 93 GSNSFS 98 (453)
Q Consensus 93 ~~~~~~ 98 (453)
-+|.+.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 444433
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=67.84 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=27.8
Q ss_pred cccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCC
Q 048417 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (453)
+.++..|++++|.++.++ .-.++|+.|.+++|.-....|..+ .++|+.|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 455666677666555444 122356666666654333334322 135555555555
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00031 Score=65.79 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=24.7
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCC
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~ 72 (453)
|+++++|++++|.++. +|. --.+|++|.++++.-...+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 4555566666555422 231 11245555555543223344332 134555555555
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.8e-05 Score=65.42 Aligned_cols=93 Identities=23% Similarity=0.193 Sum_probs=49.6
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCC--cccccchhhHhhcCCCeEEEEccCCcccC--CC
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYS--GIIGTIPNIFWSSASQIYVLDLSFNQIHG--QI 78 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~ 78 (453)
|++....-.+..|+.+++.++.++.. ..|-.+++|+.|.++.| .+.+.++.-. ..+++|+++++++|++.. ..
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccccccc
Confidence 33444445555666666666655442 22444566666666666 3333333332 344666666666666653 33
Q ss_pred cCccCCCCCcEEEccCCccc
Q 048417 79 PNLTNAAQLEVLSLGSNSFS 98 (453)
Q Consensus 79 ~~l~~~~~L~~L~l~~~~~~ 98 (453)
..+..+.+|..|++.+|...
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcchhhhhcccCCcc
Confidence 34445555666666555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=5.6e-06 Score=71.44 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=77.0
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCC-ccccCCCCCCE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIP-QSMSSLKFLNH 404 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~ 404 (453)
.+.+.+.|++.+|++.++ ..+..++.|+.|.|+-|.++.. ..+..|++|++|+|..|.|.+... +.+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356678899999988743 2356789999999999999844 347889999999999999984322 46778999999
Q ss_pred EEccCCcccccCC-C-----CcccceeecccC
Q 048417 405 LNLSNNNLTGKIP-S-----STQLQSFDASSF 430 (453)
Q Consensus 405 L~l~~n~l~~~~~-~-----~~~l~~L~~l~l 430 (453)
|+|..|+-.+.-. + +..+|+|++||-
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9999998775322 1 255778887764
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00065 Score=58.64 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=54.9
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCc--cCCCCCCccccCCCCCCEEEcCCCcCCC-CCCccccCCC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN--FFTGRIPESVGTMRSLESIDFSLNQLSG-EIPQSMSSLK 400 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~ 400 (453)
......|+.+++.+.+++ .-..+..+++|+.|.++.| .+.+.++-....+|+|+++++++|++.. .....+..+.
T Consensus 39 ~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 344556666766666654 2234566778888888888 4433332223445888888888887762 1112344566
Q ss_pred CCCEEEccCCcccc
Q 048417 401 FLNHLNLSNNNLTG 414 (453)
Q Consensus 401 ~L~~L~l~~n~l~~ 414 (453)
+|.+|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 78888888887664
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0042 Score=49.02 Aligned_cols=84 Identities=10% Similarity=0.100 Sum_probs=39.9
Q ss_pred CCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCC
Q 048417 8 NWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQL 87 (453)
Q Consensus 8 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L 87 (453)
+|..+.+|+.+.+.. .+......+|..+++|+.+.+..+ + ..++...|..++.++.+.+.++...-....+..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-c-cccceeeeecccccccccccccccccccccccccccc
Confidence 456666777777754 344555566777777777777653 4 4445555566666777777552222222334445566
Q ss_pred cEEEccC
Q 048417 88 EVLSLGS 94 (453)
Q Consensus 88 ~~L~l~~ 94 (453)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 6665543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=5.8e-05 Score=65.36 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC---cccceee
Q 048417 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS---TQLQSFD 426 (453)
Q Consensus 350 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~l~~L~ 426 (453)
.+.+.+.|+..||.+.+. .....|+.|+.|.|+-|.|+.. .-+..+.+|++|||..|.|. +++++ ..+++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 456789999999999843 3356799999999999999954 45888999999999999998 45554 8899999
Q ss_pred cccCCCCCccCCCC
Q 048417 427 ASSFSGNDLCRAPL 440 (453)
Q Consensus 427 ~l~l~~n~l~~~~~ 440 (453)
.|-|-.||=||.-.
T Consensus 92 ~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 92 TLWLDENPCCGEAG 105 (388)
T ss_pred hHhhccCCcccccc
Confidence 99999999776643
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00048 Score=68.19 Aligned_cols=109 Identities=23% Similarity=0.079 Sum_probs=53.0
Q ss_pred CCCcccEEEcCCCccccc-chhhHhhcCCCeEEEEccCC--cccC----CCcCccCCCCCcEEEccCCc-cccccc----
Q 048417 35 SQKHLNYLDLSYSGIIGT-IPNIFWSSASQIYVLDLSFN--QIHG----QIPNLTNAAQLEVLSLGSNS-FSIALP---- 102 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~ls~~--~~~~----~~~~l~~~~~L~~L~l~~~~-~~~~~~---- 102 (453)
.++.|+.+.+..+.-... .-..+...+++|++|+++++ .+.. .......+.+|+.|+++++. ++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665532122 11222355666666666652 1111 11122334566666666665 332211
Q ss_pred cccccCcEEECcCCC-CCCchhhhhhhhhcccCcccEEeccCCCC
Q 048417 103 LISSYLIELDFSNNS-ISGSIFHFICYRANELNKWQILYLSGNFL 146 (453)
Q Consensus 103 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 146 (453)
..++.|++|.+.++. ++......+. ..++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCcc
Confidence 124566666666555 4443333333 3566677777776654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0057 Score=48.25 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=21.1
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
++.+|+.+.+.. .+.......|..+..|+.+.+.++ +.......|..+.+++.+.+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344555555543 233223334455555555555543 332333344444455555554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00029 Score=69.74 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=34.3
Q ss_pred cccCCCCEEeCCCCc-ccccCchHHHhccCcceEEEecCCc-ccccC-chhhcCCCCccEEEccCCcC
Q 048417 202 ENCTALMTLDVGENE-LVENIPTWIRERFSRIVVLILRSNK-FYNLL-PKELCDLAFLQIVDLADNNL 266 (453)
Q Consensus 202 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~ 266 (453)
..+.+++.++++.+. +++..-..+...+++|+.|.+.+|. +++.. ......++.|++|+++++..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 444566666666665 4444444444445666666655555 33221 22234456666666666544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.015 Score=29.74 Aligned_cols=11 Identities=64% Similarity=0.776 Sum_probs=4.2
Q ss_pred CEEEccCCccc
Q 048417 403 NHLNLSNNNLT 413 (453)
Q Consensus 403 ~~L~l~~n~l~ 413 (453)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.0053 Score=51.01 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=51.6
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchh-hHhhcCCCeEEEEccCC-cccC-CCcCccCCCCCcEE
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPN-IFWSSASQIYVLDLSFN-QIHG-QIPNLTNAAQLEVL 90 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~ls~~-~~~~-~~~~l~~~~~L~~L 90 (453)
.++.+|-+++.+..+.-..+.+++.++.|.+.++.-.+.-.- -+.+..++|+.|++++| +|+. ...-+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467778877777766666777777888888877754232221 12234567788888866 5554 44445566666666
Q ss_pred EccCC
Q 048417 91 SLGSN 95 (453)
Q Consensus 91 ~l~~~ 95 (453)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.00056 Score=66.37 Aligned_cols=114 Identities=25% Similarity=0.250 Sum_probs=55.1
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhc----ccCcccEEeccCCCCCCCC----chhhhcCCc-ccEEEcccCccCCCCC--
Q 048417 107 YLIELDFSNNSISGSIFHFICYRAN----ELNKWQILYLSGNFLQGEL----PDCWMNYQN-LMILDLSNNKFTGNLP-- 175 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~l~~l~~-L~~L~l~~~~~~~~~~-- 175 (453)
.++.++++.|.+.......+...+. ...++++|.+.++.++... ...+..... +..+++..|.+.+...
T Consensus 173 ~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~ 252 (478)
T KOG4308|consen 173 HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEK 252 (478)
T ss_pred chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHH
Confidence 4455555555544333333333322 2455666666666554111 111222233 4445666665543211
Q ss_pred --cccccc-ccccEEEccCCcccccc-----ccccccCCCCEEeCCCCccccc
Q 048417 176 --ISLGSL-ISLQSLHLRKNNLCGTI-----HSLENCTALMTLDVGENELVEN 220 (453)
Q Consensus 176 --~~l~~l-~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~ 220 (453)
+.+..+ +.++.+++..|.++.-. +.+..++.++.+.++.|.+...
T Consensus 253 L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 253 LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 122233 45666777777665322 4445566777777777766543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.018 Score=29.38 Aligned_cols=17 Identities=47% Similarity=0.770 Sum_probs=7.7
Q ss_pred ccEEEcCCCcccccchhh
Q 048417 39 LNYLDLSYSGIIGTIPNI 56 (453)
Q Consensus 39 L~~L~l~~~~~~~~~~~~ 56 (453)
|++|++++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444555555442 44433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.00086 Score=65.12 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=18.3
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCC
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFL 146 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 146 (453)
.+++|++..|.++......+...+...+.++.++++.|.+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3444444444444444444444444444444444444443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.05 Score=25.73 Aligned_cols=13 Identities=62% Similarity=0.710 Sum_probs=5.4
Q ss_pred CCCEEEccCCccc
Q 048417 401 FLNHLNLSNNNLT 413 (453)
Q Consensus 401 ~L~~L~l~~n~l~ 413 (453)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.014 Score=48.67 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=57.8
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCC-cccc-CCCCCCEEEcCCC-cCCCCCCccccCCCCCCEEE
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIP-ESVG-TMRSLESIDFSLN-QLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~-~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~ 406 (453)
++.+|-++..|..+--.-+..+++++.|.+.+|..-+... +.++ -.++|+.|++++| +|++....++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 6777777777665555567778888888888886544322 2222 3578889999888 47777777888888888888
Q ss_pred ccCCc
Q 048417 407 LSNNN 411 (453)
Q Consensus 407 l~~n~ 411 (453)
+.+=.
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 87543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.0035 Score=53.16 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=69.1
Q ss_pred CccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccce
Q 048417 345 PLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS 424 (453)
Q Consensus 345 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~ 424 (453)
...+......+.|+++.|++. ....-|+.++.|.++|++.|++. -.|+.+.+...+..+++++|..+..+-...+.+.
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 345566677888888888776 45556777788888888888887 6777777788888888888888865555688888
Q ss_pred eecccCCCCCcc
Q 048417 425 FDASSFSGNDLC 436 (453)
Q Consensus 425 L~~l~l~~n~l~ 436 (453)
+++++..+|+++
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888853
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.018 Score=49.01 Aligned_cols=87 Identities=15% Similarity=0.022 Sum_probs=58.2
Q ss_pred CcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCc
Q 048417 9 WIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 88 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~ 88 (453)
+......+.||++.+.+-. ....|+.+..|..++++.+++ ...|.++ +....++.+++.+|..+..+......++++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 3446667777777776632 345566677777777777777 6667666 556667777777777776666667777777
Q ss_pred EEEccCCccc
Q 048417 89 VLSLGSNSFS 98 (453)
Q Consensus 89 ~L~l~~~~~~ 98 (453)
++++..+.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7776666543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.60 E-value=0.49 Score=25.06 Aligned_cols=13 Identities=54% Similarity=0.690 Sum_probs=5.4
Q ss_pred CCCEEEcCCCcCC
Q 048417 377 SLESIDFSLNQLS 389 (453)
Q Consensus 377 ~L~~L~l~~n~l~ 389 (453)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.60 E-value=0.49 Score=25.06 Aligned_cols=13 Identities=54% Similarity=0.690 Sum_probs=5.4
Q ss_pred CCCEEEcCCCcCC
Q 048417 377 SLESIDFSLNQLS 389 (453)
Q Consensus 377 ~L~~L~l~~n~l~ 389 (453)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=83.13 E-value=0.7 Score=23.92 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=6.8
Q ss_pred CcccEEEcCCCcccc
Q 048417 37 KHLNYLDLSYSGIIG 51 (453)
Q Consensus 37 ~~L~~L~l~~~~~~~ 51 (453)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455555555555533
|
... |
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=81.92 E-value=0.99 Score=23.97 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=12.5
Q ss_pred CCCCEEEccCCcccccCCCC
Q 048417 400 KFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~ 419 (453)
+.|++|++++|+++ .+|++
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 35777777777777 45543
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=80.11 E-value=1.7 Score=23.11 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=8.8
Q ss_pred CCCCEEEccCCccc
Q 048417 400 KFLNHLNLSNNNLT 413 (453)
Q Consensus 400 ~~L~~L~l~~n~l~ 413 (453)
.+|++|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 453 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 5e-30 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-30 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-09 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-07 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 353 bits (907), Expect = e-114
Identities = 141/465 (30%), Positives = 200/465 (43%), Gaps = 38/465 (8%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L H P + S L L LS + G +P + VLDLSFN+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 74 IHGQIP----NLTNAAQLEVLSLGSNSFSIALP-----LISSYLIELDFSNNSISGSIFH 124
G++P NL+ A L L L SN+FS + + L EL NN +G I
Sbjct: 355 FSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
+ ++ L+LS N+L G +P + L L L N G +P L + +L
Sbjct: 413 TLS----NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 185 QSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
++L L N+L G I L NCT L + + N L IP WI R + +L L +N F
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFS 527
Query: 244 NLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP 303
+P EL D L +DL N +G +P + + N AGK Y +
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 304 LIA--------------------TLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343
A V G + + +D S N SG
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 344 IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLN 403
IP E+ ++ L +NL +N +G IP+ VG +R L +D S N+L G IPQ+MS+L L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 404 HLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLSGNCSEH 447
++LSNNNL+G IP Q ++F + F N LC PL +
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 1e-71
Identities = 113/437 (25%), Positives = 169/437 (38%), Gaps = 52/437 (11%)
Query: 15 LATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFW-SSASQIYVLDLSFNQ 73
L +L L + H+ L LDLS + + G + + S S + L++S N
Sbjct: 79 LESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137
Query: 74 IHGQIP--NLTNAAQLEVLSLGSNSFS------IALPLISSYLIELDFSNNSISGSIFHF 125
+ LEVL L +NS S L L L S N ISG +
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--- 194
Query: 126 ICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185
+ + L +S N +P + L LD+S NK +G+ ++ + L+
Sbjct: 195 ---DVSRCVNLEFLDVSSNNFSTGIPFLG-DCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245
L++ N G I +L L + EN+ IP ++ + L L N FY
Sbjct: 251 LLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 246 LPKELCDLAFLQIVDLADNNLSGEVPR-CIHNLRAMVTMNSHAGKAIQYQFLLYASRAPL 304
+P + L+ + L+ NN SGE+P + +R + L S
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV--------------LDLSFNEF 355
Query: 305 IATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN--LKVLQSVNLSNN 362
L E + +L +D S NNFSG I + LQ + L NN
Sbjct: 356 SGELPESLT----------NLSASL-LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS--- 419
FTG+IP ++ L S+ S N LSG IP S+ SL L L L N L G+IP
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 420 -TQLQSFDAS--SFSGN 433
L++ +G
Sbjct: 465 VKTLETLILDFNDLTGE 481
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 2e-60
Identities = 102/415 (24%), Positives = 177/415 (42%), Gaps = 77/415 (18%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWS--SASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSN 95
+ +DLS + + S S + + L LS + I+G + +A L L L N
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110
Query: 96 SFSIALPLIS-----SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGEL 150
S S + ++ S L L+ S+N++ + N L ++L LS N + G
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL---EVLDLSANSISGAN 167
Query: 151 PDCWM---NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTAL 207
W+ L L +S NK +G++ + ++L+ L + NN I L +C+AL
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225
Query: 208 MTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
LD+ N+L + I + + +L + SN+F +P L LQ + LA+N +
Sbjct: 226 QHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282
Query: 268 GEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTL 327
GE+P +
Sbjct: 283 GEIPDFLSGA-------------------------------------------------C 293
Query: 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIP-ESVGTMRSLESIDFSLN 386
+ + +D S N+F G +P + +L+S+ LS+N F+G +P +++ MR L+ +D S N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 387 QLSGEIPQSMSSLKF-LNHLNLSNNNLTGKIPSS------TQLQSFDAS--SFSG 432
+ SGE+P+S+++L L L+LS+NN +G I + LQ F+G
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-46
Identities = 93/372 (25%), Positives = 142/372 (38%), Gaps = 82/372 (22%)
Query: 83 NAAQLEVLSLGSNSFSIALPLISS------YLIELDFSNNSISGSIFHFICYRANELNKW 136
++ + L S ++ +SS L L SN+ I+GS+ F C
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-----SASL 102
Query: 137 QILYLSGNFLQGELPDCWM--NYQNLMILDLSNNKFTGNLPISLG-SLISLQSLHLRKNN 193
L LS N L G + + L L++S+N +S G L SL+ L L N+
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 194 LCGTIHS----LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKE 249
+ G + C L L + N++ ++ R + L + SN F +P
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGIP-F 218
Query: 250 LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309
L D + LQ +D++ N LSG+ R I
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCT------------------------------- 247
Query: 310 EDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIP 369
L ++++ S N F G IP LK LQ ++L+ N FTG IP
Sbjct: 248 ------------------EL-KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286
Query: 370 ESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-----TQLQ 423
+ + G +L +D S N G +P S L L LS+NN +G++P L+
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 424 SFDAS--SFSGN 433
D S FSG
Sbjct: 347 VLDLSFNEFSGE 358
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 3e-15
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 330 VRIIDFSKNNFS---GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386
V ID S + + + +L L+S+ LSN+ G + SL S+D S N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110
Query: 387 QLSGEIP--QSMSSLKFLNHLNLSNNNLTGKIPSS-----TQLQSFDASS--FSGNDLCR 437
LSG + S+ S L LN+S+N L S L+ D S+ SG ++
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 438 APLSGNCS 445
LS C
Sbjct: 171 WVLSDGCG 178
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 3e-61
Identities = 86/350 (24%), Positives = 137/350 (39%), Gaps = 64/350 (18%)
Query: 102 PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE--LPDCWMNYQN 159
+SS+L D N + G + C + + L LSG L +P N
Sbjct: 22 TTLSSWLPTTDCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77
Query: 160 LMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENEL 217
L L + N G +P ++ L L L++ N+ G I L L+TLD N L
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFL-QIVDLADNNLSGEVPRCIHN 276
+P I +V + N+ +P + L + ++ N L+G++P N
Sbjct: 138 SGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336
L NL + D S
Sbjct: 197 L--------------------------------------------------NLAFV-DLS 205
Query: 337 KNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396
+N G + + K Q ++L+ N + VG ++L +D N++ G +PQ +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 397 SSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLSGNCS 445
+ LKFL+ LN+S NNL G+IP LQ FD S+++ N LC +PL C+
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-36
Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 37/265 (13%)
Query: 14 QLATLGLRHCHLG--SRFPSWLYSQKHLNYLDLS-YSGIIGTIPNIFWSSASQIYVLDLS 70
++ L L +L PS L + +LN+L + + ++G IP + +Q++ L ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYIT 109
Query: 71 FNQIHGQIP-NLTNAAQLEVLSLGSNSFSIALPL-IS--SYLIELDFSNNSISGSIFHFI 126
+ G IP L+ L L N+ S LP IS L+ + F N ISG+I
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 127 CYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 186
+ + + +S N L G++P + N NL +DLS N G+ + GS + Q
Sbjct: 170 ---GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 187 LHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246
+HL KN+L + + L LD+ N + +
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL------------------------- 260
Query: 247 PKELCDLAFLQIVDLADNNLSGEVP 271
P+ L L FL ++++ NNL GE+P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP 285
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 5e-32
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 25/246 (10%)
Query: 10 IPPF-----QLATLGLRH-CHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQ 63
IP L L + +L P + L+YL ++++ + G IP+ F S
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKT 126
Query: 64 IYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSIALPL----ISSYLIELDFSNNSI 118
+ LD S+N + G +P ++++ L ++ N S A+P S + S N +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 119 SGSIFHFICYRANELNKW--QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPI 176
+G I + LS N L+G+ + + +N + L+ N +L
Sbjct: 187 TGKI-------PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238
Query: 177 SLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVL 235
+G +L L LR N + GT+ L L +L+V N L IP R V
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVS 296
Query: 236 ILRSNK 241
+NK
Sbjct: 297 AYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-31
Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 17/252 (6%)
Query: 42 LDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI---PNLTNAAQLEVLSL-GSNSF 97
D +G + + + ++ LDLS + +L N L L + G N+
Sbjct: 31 TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 98 SIALPL-IS--SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW 154
+P I+ + L L ++ ++SG+I F+ ++ L S N L G LP
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS----QIKTLVTLDFSYNALSGTLPPSI 145
Query: 155 MNYQNLMILDLSNNKFTGNLPISLGSLISL-QSLHLRKNNLCGTI-HSLENCTALMTLDV 212
+ NL+ + N+ +G +P S GS L S+ + +N L G I + N L +D+
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 213 GENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPR 272
N L + + L N L ++ L +DL +N + G +P+
Sbjct: 205 SRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 273 CIHNLRAMVTMN 284
+ L+ + ++N
Sbjct: 263 GLTQLKFLHSLN 274
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 56/248 (22%), Positives = 86/248 (34%), Gaps = 64/248 (25%)
Query: 199 HSLENCTALM----TLDVGENELVENIPTWIRERFSRIVVLILRSNKFY--NLLPKELCD 252
L N T L T D + + + R+ L L +P L +
Sbjct: 16 KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLAN 74
Query: 253 LAFLQIVDLAD-NNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311
L +L + + NNL G +P I L
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLT--------------------------------- 101
Query: 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371
L + + N SG IP ++ +K L +++ S N +G +P S
Sbjct: 102 ----------------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFL-NHLNLSNNNLTGKIPSS---TQLQSFDA 427
+ ++ +L I F N++SG IP S S L + +S N LTGKIP + L D
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 428 SS--FSGN 433
S G+
Sbjct: 205 SRNMLEGD 212
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 343 KIPLEVTNLKVLQS----VNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE--IPQSM 396
+I ++ N L S + N + G + ++ + ++D S L IP S+
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 397 SSLKFLNHLNLSN-NNLTGKIPSS----TQLQSFDAS--SFSGN 433
++L +LN L + NNL G IP + TQL + + SG
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 7e-45
Identities = 75/436 (17%), Positives = 149/436 (34%), Gaps = 48/436 (11%)
Query: 14 QLATLGLRHCHLGSRFPSWLYS--QKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
+ L L + L + + +L LDLSY+ + + F + Q+ L +
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEY 281
Query: 72 NQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLIS------------SYLIELDFSNNSI 118
N I + L + L+L + ++ L S L L+ +N I
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 119 SGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW----MNYQNLMILDLSNNKFTGNL 174
G + L + L LS +F + + L IL+L+ NK +
Sbjct: 342 PGIKSNMFTG----LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 175 PISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMTLDVGENELVENIPTWIRERFSRI 232
+ L L+ L L N + + + + + N+ ++ +
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSL 456
Query: 233 VVLILRSNKFYNL--LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA 290
L+LR N+ P L L I+DL++NN++ + L + ++
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD------ 510
Query: 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350
L + +A L + A G + + L+ + I++ N F +
Sbjct: 511 ------LQHNN---LARLWKHAN---PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558
Query: 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMS-SLKFLNHLNLSN 409
L L+ ++L N SL+S++ N ++ + + + L L++
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Query: 410 NNLTGKIPSSTQLQSF 425
N S ++
Sbjct: 619 NPFDCTCESIAWFVNW 634
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 7e-44
Identities = 83/424 (19%), Positives = 151/424 (35%), Gaps = 37/424 (8%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P + L L H L + L LD+ ++ I P + + VL+L
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQH 82
Query: 72 NQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFIC 127
N++ L L L SNS LI LD S+N +S +
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 128 YRANELNKWQILYLSGNFLQGELPD--CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185
+L Q L LS N +Q + +L L+LS+N+ P ++ L
Sbjct: 143 ----QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Query: 186 SLHLRKNNLCGTIHS----LENCTALMTLDVGENELVENIPTWIRE-RFSRIVVLILRSN 240
L L L ++ T++ L + ++L T +++ + +L L N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
+ L L+ L NN+ +H L + +N ++ Q + AS
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLAS 316
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
+ + + +F + L + ++ N+ G T L L+ ++LS
Sbjct: 317 ----LPKIDDFSF-----------QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
Query: 361 NNFFTGRIPESVG----TMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKI 416
N+F + R + L ++ + N++S + S L L L+L N + ++
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Query: 417 PSST 420
Sbjct: 422 TGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-40
Identities = 74/433 (17%), Positives = 136/433 (31%), Gaps = 48/433 (11%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L+H L +L L L + I N F + LDLS N
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNG 132
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSFSIALP-----LISSYLIELDFSNNSISGSIFHFIC 127
+ L+ L L +N +S L +L+ S+N I
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF- 191
Query: 128 YRANELNKWQILYLSGNFLQGELPD---CWMNYQNLMILDLSNNKFTGNLPISLGSL--I 182
+ + + L+L+ L L + + ++ L LSN++ + + L
Sbjct: 192 ---HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248
Query: 183 SLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFS--------RIV 233
+L L L NNL S L + N + + F+
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 234 VLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQY 293
+ + L L+ +++ DN++ G L +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL------------- 355
Query: 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKV 353
++L ++ + TL + FV + + + I++ +KN S + L
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSL---------AHSPLHILNLTKNKISKIESDAFSWLGH 406
Query: 354 LQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
L+ ++L N + + ++ I S N+ S + + L L L L
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466
Query: 413 TGKIPSSTQLQSF 425
S + Q
Sbjct: 467 KNVDSSPSPFQPL 479
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-39
Identities = 84/425 (19%), Positives = 140/425 (32%), Gaps = 54/425 (12%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIF-WSSASQIYVLDLSFN 72
L TL L H L S ++L L LS + I + S + L+LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 73 QIHGQIPN-LTNAAQLEVLSLGSNSFSIALP------LISSYLIELDFSNNSISGSIFH- 124
QI P +L L L + +L L ++ + L SN+ +S +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
F+ + L +L LS N L D + L L N SL L ++
Sbjct: 242 FLGLKWTNL---TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 185 QSLHLRKNNLCGTI----------HSLENCTALMTLDVGENELVENIPTWIRERFSRIVV 234
+ L+L+++ +I S + L L++ +N++ +
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKY 357
Query: 235 LILRSN--KFYNLLPKELCDLAF--LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA 290
L L ++ L + LA L I++L N +S L +
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV-------- 409
Query: 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350
L + L + R L + I S N +
Sbjct: 410 ------LDLGLNEIGQELTGQEW-----------RGLENIFEIYLSYNKYLQLTRNSFAL 452
Query: 351 LKVLQSVNLSNNFFTG--RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408
+ LQ + L P +R+L +D S N ++ + L+ L L+L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512
Query: 409 NNNLT 413
+NNL
Sbjct: 513 HNNLA 517
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-35
Identities = 80/436 (18%), Positives = 140/436 (32%), Gaps = 78/436 (17%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
H L ++ P L ++ L+L+++ + F + SQ+ LD+ FN
Sbjct: 5 SHEVADCSHLKL-TQVPDDL--PTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNT 60
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSFS-IALPLIS--SYLIELDFSNNSISGSIFHFICYR 129
I P L+VL+L N S ++ + + L EL +NSI +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-- 118
Query: 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP--ISLGSLISLQSL 187
+ L LS N L + +NL L LSNNK + + + SL+ L
Sbjct: 119 --KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Query: 188 HLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERF--SRIVVLILRSNKFYN 244
L N + L L + +L ++ + + I L L +++
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 245 LLPKELCDLAF--LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302
L + L ++DL+ NNL+ L
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP------------------------ 272
Query: 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN 362
L NN + L ++ +NL +
Sbjct: 273 -------------------------QL-EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 363 FFTGRI---------PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
F I S ++ LE ++ N + G + L L +L+LSN+ +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 414 GKIPSSTQLQSFDASS 429
+ ++ S S
Sbjct: 367 LRTLTNETFVSLAHSP 382
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-34
Identities = 76/421 (18%), Positives = 131/421 (31%), Gaps = 69/421 (16%)
Query: 39 LNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSF 97
D S+ + ++ + I VL+L+ NQ+ T +QL L +G N+
Sbjct: 6 HEVADCSHLKLTQVPDDLPTN----ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 98 SIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157
S L L ++L L N L +
Sbjct: 62 S--------KLEPELCQK-----------------LPMLKVLNLQHNELSQLSDKTFAFC 96
Query: 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENE 216
NL L L +N +L +L L N L T + L L + N+
Sbjct: 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156
Query: 217 LVENIPTWIRERF-SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIH 275
+ + S + L L SN+ P + L + L + L + +
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216
Query: 276 NLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335
A ++ + L S + ++T F+ +K NL ++D
Sbjct: 217 LELANTSIRN-----------LSLSNS-QLSTTSNTTFLGLKW--------TNL-TMLDL 255
Query: 336 SKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESID---------FSLN 386
S NN + L L+ L N S+ + ++ ++ SL
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 387 QLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS----TQLQSFDASSFSGNDLCRAPLSG 442
L S LK L HLN+ +N++ G + L+ S + L+
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS---LSNSFTSLRTLTN 372
Query: 443 N 443
Sbjct: 373 E 373
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 7e-20
Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 20/241 (8%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72
L L L +G + +++ + LSY+ + N F + + L L
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRV 464
Query: 73 QIHGQIPN---LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFI 126
+ + L +L L +N+ + + L LD +N+++ H
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524
Query: 127 CYRANE----LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182
L+ IL L N + + + L I+DL N + +
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584
Query: 183 SLQSLHLRKNNLCGTIHSL--ENCTALMTLDVGENELVENIPT------WIRERFSRIVV 234
SL+SL+L+KN + + L LD+ N + WI E + I
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644
Query: 235 L 235
L
Sbjct: 645 L 645
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 19/198 (9%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSY-------SGIIGTIPNIFWSSASQIYV 66
L L L + ++ + L + L LDL + P F S +++
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 67 LDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSI 122
L+L N + +L+++ LG N+ + + L L+ N I+
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 123 FHFICYRANELNKWQILYLSGNFLQGELPDC-----WMNYQNLMILDLSNNKFTGNLPIS 177
L + N W+N + I +LS++ P
Sbjct: 601 KKVF---GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHY 657
Query: 178 LGSLISLQSLHLRKNNLC 195
G + L K++
Sbjct: 658 HGFPVRLFDTSSCKDSAH 675
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-38
Identities = 60/442 (13%), Positives = 126/442 (28%), Gaps = 82/442 (18%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L + + + I + +++ + +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAV-MRLTKLRQFYMGNSP 217
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS---SYLIELDFSNNSISGSIFHFICYRA 130
+ E + L L +++ N + F+
Sbjct: 218 FVAENI----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--- 270
Query: 131 NELNKWQILYLSGNFLQG--ELPDCWM------NYQNLMILDLSNNKF-TGNLPISLGSL 181
L + Q++ ++ N +L D W + + I+ + N T + SL +
Sbjct: 271 -ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329
Query: 182 ISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNK 241
L L N L G + + + L +L++ N++ IP ++ L NK
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNK 388
Query: 242 FYNLLPK-ELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300
+ + ++ + +D + N + + L +
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN-------------- 434
Query: 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLS 360
V I+ S N S + L S+NL
Sbjct: 435 -----------------------------VSSINLSNNQISKFPKELFSTGSPLSSINLM 465
Query: 361 NNFFTG-------RIPESVGTMRSLESIDFSLNQLSGEIPQS--MSSLKFLNHLNLSNNN 411
N T E+ L SID N+L+ + ++L +L ++LS N+
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS 524
Query: 412 LTGKIPSS----TQLQSFDASS 429
+ P+ + L+ F +
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRN 545
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 7e-38
Identities = 62/438 (14%), Positives = 130/438 (29%), Gaps = 82/438 (18%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIF-------WSSASQIYV 66
L + + +C ++ P++L + + ++++ + I +I +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 67 LDLSFNQI-HGQIPN-LTNAAQLEVLSLGSNSFSIALPLIS--SYLIELDFSNNSISGSI 122
+ + +N + + L +L +L N LP L L+ + N I+
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIP 369
Query: 123 FHFICYRANELNKWQILYLSGNFLQGELPD--CWMNYQNLMILDLSNNKFTG-------N 173
+F + + L + N L+ +P+ + + +D S N+
Sbjct: 370 ANFC----GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Query: 174 LPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVE---NIPTWIRERF 229
L + I++ S++L N + + L ++++ N L E N E F
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 230 SR---IVVLILRSNKFYNLLPK-ELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNS 285
+ + LR NK L L +L +DL+ N+ S P N +
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL----- 538
Query: 286 HAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP 345
+ + D N + P
Sbjct: 539 ---------------------------------------KGFGIRNQRDAQGNRTLREWP 559
Query: 346 LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405
+T L + + +N + E ++ +D N +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRK-VNEK--ITPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616
Query: 406 NLSNNNLTGKIPSSTQLQ 423
L + I L
Sbjct: 617 MLFYDKTQ-DIRGCDALD 633
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-35
Identities = 68/474 (14%), Positives = 137/474 (28%), Gaps = 91/474 (19%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVL---DLS 70
++ L L R P + L L L G S
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 71 FNQIHGQIPN---LTNAAQLEVLSLGSNSFSIALP---LISSYLIELDFSNNSISGSIFH 124
+ + + L + S+ ++ I+ ++ +N+I+ +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSK 200
Query: 125 FICYRANELNKWQILYLSGNFLQGE-------------------LPDCWMNYQNLMILDL 165
+ L K + Y+ + E W N ++L +++
Sbjct: 201 AVM----RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256
Query: 166 SNNKFTGNLPISLGSLISLQSLHLRKNNL---------CGTIHSLENCTALMTLDVGENE 216
N LP L +L +Q +++ N + + + +G N
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316
Query: 217 LVE-NIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIH 275
L + T ++ + ++ +L N+ LP L ++LA N ++
Sbjct: 317 LKTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCG 374
Query: 276 NLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335
+ L + L + ++++++ IDF
Sbjct: 375 FTEQVEN--------------LSFAHNKL-KYIPNIFDA----------KSVSVMSAIDF 409
Query: 336 SKNNFSG-------KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388
S N + + S+NLSNN + E T L SI+ N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469
Query: 389 SG-------EIPQSMSSLKFLNHLNLSNNNLTGKIPSS------TQLQSFDASS 429
+ + ++ + L ++L N LT + L D S
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 58/376 (15%), Positives = 127/376 (33%), Gaps = 47/376 (12%)
Query: 51 GTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLISSYLI 109
G P + +S ++ L L G++P+ + +LEVL+LGS+ + L I
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 110 ELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNK 169
+ S+ ++ F+ P ++ +L+ ++++
Sbjct: 130 SANMSDEQKQKMR----------------MHYQKTFV-DYDPRE--DFSDLIKDCINSDP 170
Query: 170 FTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERF 229
++ S + + NN+ ++ T L +G + V E
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE-- 228
Query: 230 SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289
+ Y + +L L V++ + ++P + L M +N
Sbjct: 229 ----NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN----- 279
Query: 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF-SGKIPLEV 348
+ + + L DA ++II NN + + +
Sbjct: 280 -VACNRGISGEQLKDDWQALADAP------------VGEKIQIIYIGYNNLKTFPVETSL 326
Query: 349 TNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408
+K L + N G + G+ L S++ + NQ++ + + +L+ +
Sbjct: 327 QKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 409 NNNLTGKIPSSTQLQS 424
+N L IP+ +S
Sbjct: 386 HNKLKY-IPNIFDAKS 400
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 7e-33
Identities = 59/434 (13%), Positives = 136/434 (31%), Gaps = 73/434 (16%)
Query: 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDL 69
+ + K L +++ + +P + ++ ++++
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINV 280
Query: 70 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSI-SGSIFHFICY 128
+ N+ + L +G + + N++ + + +
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEK------------IQIIYIGYNNLKTFPVETSLQ- 327
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSL 187
++ K +L N L+G + + L L+L+ N+ T +P + G +++L
Sbjct: 328 ---KMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENL 382
Query: 188 HLRKNNLCG--TIHSLENCTALMTLDVGENEL-------VENIPTWIRERFSRIVVLILR 238
N L I ++ + + +D NE+ + + + + + L
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP-FKGINVSSINLS 441
Query: 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSG-------EVPRCIHNLRAMVTMNSHAGKAI 291
+N+ + + L ++L N L+ + N + +
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS--------- 492
Query: 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNL 351
+ L T L D F TL + ID S N+FS P + N
Sbjct: 493 -----IDLRFNKL--TKLSDDFRA---------TTLPYLVGIDLSYNSFSK-FPTQPLNS 535
Query: 352 KVLQSVNLSN------NFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405
L+ + N N PE + SL + N + + + + ++ L
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVL 592
Query: 406 NLSNNNLTGKIPSS 419
++ +N S
Sbjct: 593 DIKDNPNISIDLSY 606
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-32
Identities = 56/419 (13%), Positives = 121/419 (28%), Gaps = 84/419 (20%)
Query: 22 HCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI--- 78
G++ L S + L L G G +P+ +++ VL L +
Sbjct: 66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLF 124
Query: 79 --PNLTNAAQLEVLSLGSNSFSIALP-----LISSYLIELDFSNNSISGSIFHFICYRAN 131
++ E + S LI+ +++ SI
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
+ + N + + M L + N+ F + + K
Sbjct: 185 DTQ----IGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239
Query: 192 NNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL------ 245
+N L ++V + +PT+++ + ++ + N+ +
Sbjct: 240 TE----DLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDD 294
Query: 246 --LPKELCDLAFLQIVDLADNNL-SGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302
+ +QI+ + NNL + V + ++
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK------------------------ 330
Query: 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN 362
L +++ N GK+P + L S+NL+ N
Sbjct: 331 -------------------------KL-GMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363
Query: 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ--SMSSLKFLNHLNLSNNNLTGKIPSS 419
T G +E++ F+ N+L IP S+ ++ ++ S N + +
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 38/293 (12%), Positives = 85/293 (29%), Gaps = 51/293 (17%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-----SLENCTALMTL 210
+ + L L +G +P ++G L L+ L L + + +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 211 DVGENELVENIPTWI-RERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE 269
+ + RE FS ++ + S+ + K + NN++
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197
Query: 270 VPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNL 329
V + + L + Y +P +A +
Sbjct: 198 VSKAVMRLTKLRQ--------------FYMGNSPFVAENI-----------------CEA 226
Query: 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL- 388
+ L+ NLK L V + N ++P + + ++ I+ + N+
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286
Query: 389 -------SGEIPQSMSSLKFLNHLNLSNNNL-TGKIPSS----TQLQSFDASS 429
+ + + + + NNL T + +S +L +
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 33/271 (12%), Positives = 75/271 (27%), Gaps = 56/271 (20%)
Query: 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIP 222
+ + + +SL S + L L G + ++ T L L +G + N
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 282
+ + S + + + + DL + ++ +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD------------- 169
Query: 283 MNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342
P ++ + + + +K + I NN +
Sbjct: 170 --------------------PQQKSIKKSSRITLKDTQ------------IGQLSNNITF 197
Query: 343 KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFL 402
+ V L L+ + N+ F + E Q +LK L
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDL 251
Query: 403 NHLNLSNNNLTGKIPSS----TQLQSFDASS 429
+ + N K+P+ ++Q + +
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 8/124 (6%)
Query: 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG----RIPESVGTMRSLESIDFSL 385
V + SG++P + L L+ + L ++ P+ + S E
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 386 NQLSGEIPQSMSSLKFLN--HLNLSNNNLTGKIPSSTQLQSFDAS-SFSGNDLCRAPLS- 441
F + ++++ I S+++ D N++ +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202
Query: 442 GNCS 445
+
Sbjct: 203 MRLT 206
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 12/109 (11%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Query: 338 NNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG----EIP 393
+ + + + + + + ++L +GR+P+++G + LE + + P
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 394 QSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSG 442
+ +S+ + + F S + + P
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDF--SDLIKDCINSDPQQK 173
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 356 SVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415
+ N + + + S+ + + + SG +P ++ L L L L ++
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 416 IPSS-----TQLQSFDASSFSGNDLCRAPLSGNCSEHVS 449
+ S + + + + E S
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 75/438 (17%), Positives = 136/438 (31%), Gaps = 33/438 (7%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L C + + S HL+ L L+ + I F S S + L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETN 111
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSF-SIALPLI---SSYLIELDFSNNSISGSIFHFICY 128
+ + + L+ L++ N S LP + L LD S+N I +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSL 187
L LS N + P + L L L NN + N+ + L L+
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 188 HLRKNNLCGTIH----SLENCTALMTLDVGENEL-----VENIPTWIRERFSRIVVLILR 238
L + L L + E L + + + + L
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLY 298
S + Q ++L + + +L+ + ++ G A L
Sbjct: 291 SVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-- 346
Query: 299 ASRAPLIATL-LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSV 357
P + L L + KG ++ + ++ +D S N + L+ L+ +
Sbjct: 347 ----PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401
Query: 358 NLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKI 416
+ ++ SV ++R+L +D S + L L L ++ N+
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 417 PSS-----TQLQSFDASS 429
L D S
Sbjct: 462 LPDIFTELRNLTFLDLSQ 479
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 5e-36
Identities = 64/437 (14%), Positives = 115/437 (26%), Gaps = 79/437 (18%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P +L L + P + L+ L L + + + + V L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 72 NQIHGQ-------IPNLTNAAQLEVLSLGSNSFSIALPLISS------YLIELDFSNNSI 118
+ + L L + L I + + +I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 119 SGSIFHFICYRANELN-------------KWQILYLSGNFLQGELPDCWMNYQNLMILDL 165
+ L + L+ +G ++ +L LDL
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354
Query: 166 SNNK--FTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPT 223
S N F G S SL+ L L N + + L LD + L +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 224 WIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTM 283
+ ++ L + L+ L+++ +A N+ I
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT------- 467
Query: 284 NSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343
L + +D S+
Sbjct: 468 ------------------------------------------ELRNLTFLDLSQCQLEQL 485
Query: 344 IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSL-KFL 402
P +L LQ +N+S+N F + SL+ +D+SLN + Q + L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 403 NHLNLSNNNLTGKIPSS 419
LNL+ N+
Sbjct: 546 AFLNLTQNDFACTCEHQ 562
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-33
Identities = 77/429 (17%), Positives = 132/429 (30%), Gaps = 36/429 (8%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
PF L L L +S L LDLS I + S S + L L+
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTG 85
Query: 72 NQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFIC 127
N I + + L+ L + + L EL+ ++N I
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 128 YRANELNKWQILYLSGNFLQGELPDCWMNYQNL----MILDLSNNKFTGNLPISLGSLIS 183
L + L LS N +Q + + LDLS N + I
Sbjct: 146 SNLTNL---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIR 201
Query: 184 LQSLHLRKNNLCGTIHSLE----NCTALMTLDVGENELVENIPTWIRERFSRIVVLILRS 239
L L LR N + + L +GE N+ + + + L +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 240 NK------FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQY 293
+ + + + L + L + + + + +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKN--NFSGKIPLEVTNL 351
L +L F KG A E L + +D S+N +F G
Sbjct: 322 LKLK---------SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM-SSLKFLNHLNLSNN 410
L+ ++LS N + + + LE +DF + L S+ SL+ L +L++S+
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 411 NLTGKIPSS 419
+
Sbjct: 432 HTRVAFNGI 440
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 76/440 (17%), Positives = 142/440 (32%), Gaps = 61/440 (13%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L +L S + K L L+++++ I ++S+ + + LDLS N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 74 IHGQIPN-LTNAAQLEV----LSLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFI 126
I L Q+ + L L N + P L +L NN S ++
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220
Query: 127 CYRANELNKWQILYLSGNFLQGEL------PDCWMNYQNLMILDLS---NNKFTGNLPIS 177
L ++ L + E NL I + + + ++
Sbjct: 221 IQGLAGL---EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 178 LGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237
L ++ S L + + L++ + PT + L
Sbjct: 278 FNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKF-GQFPTLK---LKSLKRLTF 332
Query: 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLS--GEVPRCIHNLRAMVTMNSHAGKAIQYQF 295
SNK N DL L+ +DL+ N LS G + ++ ++ + +
Sbjct: 333 TSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD------LSFNG 384
Query: 296 LLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVL 354
+ + F L + +DF +N V +L+ L
Sbjct: 385 V----------ITMSSNF-----------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 355 QSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI-PQSMSSLKFLNHLNLSNNNLT 413
+++S+ + SLE + + N P + L+ L L+LS L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 414 GKIPSS----TQLQSFDASS 429
P++ + LQ + S
Sbjct: 484 QLSPTAFNSLSSLQVLNMSH 503
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 69/394 (17%), Positives = 114/394 (28%), Gaps = 56/394 (14%)
Query: 62 SQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISG 120
LDLSFN + + +L+VL L S I
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---------------------SRCEIQT 66
Query: 121 SIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS 180
L+ L L+GN +Q + +L L +G
Sbjct: 67 IEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 181 LISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFS---RIVVL 235
L +L+ L++ N + N T L LD+ N++ T +R + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 236 ILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQF 295
L N + P ++ L + L +N S V + A + ++ + +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 296 LLYASRAPLIA-----TLLEDAFVVMKGREAKYERTLNL---VRIIDFSKNNFSGKIPLE 347
L + T+ E + N V
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF- 300
Query: 348 VTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407
+ Q + L N F + +++ L + G S L L L+L
Sbjct: 301 -SYNFGWQHLELVNCKFGQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDL 354
Query: 408 SNNNLT--GKIPSS----TQLQSFDASSFSGNDL 435
S N L+ G S T L+ D S N +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLD---LSFNGV 385
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 49/247 (19%), Positives = 85/247 (34%), Gaps = 15/247 (6%)
Query: 14 QLATLGLRHCHLGSR--FPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
L L L L + + L YLDLS++G+I N + Q+ LD
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQH 405
Query: 72 NQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFI 126
+ + + L L + +A I S L L + NS + I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 127 CYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 186
EL L LS L+ P + + +L +L++S+N F L SLQ
Sbjct: 466 ---FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 187 LHLRKNNLCGTIHSL--ENCTALMTLDVGENELVENIP-TWIRERFSRIVVLILRSNKFY 243
L N++ + ++L L++ +N+ + L++ +
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582
Query: 244 NLLPKEL 250
P +
Sbjct: 583 CATPSDK 589
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 7/116 (6%)
Query: 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389
+ +D S N + LQ ++LS + ++ L ++ + N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 390 GEIPQSMSSLKFLNHLNLSNNNLTGKIPSS----TQLQSFDASSFSGNDLCRAPLS 441
+ S L L L NL L+ + + N + L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN---VAHNLIQSFKLP 142
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 77/418 (18%), Positives = 137/418 (32%), Gaps = 40/418 (9%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWS-SASQIYVLDLSFN 72
L +L L H+ S + + L LD + I S + L+L+ N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189
Query: 73 QIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISS-----YLIELDFSNNSISGSIFHFIC 127
I G P ++A + L+ G + + L F +
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF- 248
Query: 128 YRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSL 187
+ + L ++ + + + L LDL+ + LP L L +L+ L
Sbjct: 249 -EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL 306
Query: 188 HLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL- 245
L N S N +L L + N + T E + L L +
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366
Query: 246 -LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPL 304
+L +L+ LQ ++L+ N + L + L
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL--------------LDLAFTRL 412
Query: 305 IATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364
+ F + L+L+++++ S + L LQ +NL N F
Sbjct: 413 KVKDAQSPF-----------QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 365 TGRIPESVGT---MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419
+ + + LE + S LS + +SLK +NH++LS+N LT +
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-32
Identities = 85/419 (20%), Positives = 136/419 (32%), Gaps = 45/419 (10%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L C + SQ L+ L L+ + +I S + L
Sbjct: 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTG 116
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSF-SIALPLIS--SYLIELDFSNNSISGSIFHFICYR 129
I L N LE L LGSN SI LP L LDF NN+I +
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSS 175
Query: 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLG--SLISLQSL 187
+ L L+GN + + + L+ + + L ++ SL
Sbjct: 176 LQQA-TNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233
Query: 188 HLRKNNLC----GTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
+ L + + ++++ ++ FS + L L +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFH-CFSGLQELDLTATHL- 290
Query: 244 NLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP 303
+ LP L L+ L+ + L+ N N ++ L
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH--------------LSIKGNT 336
Query: 304 LIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN--FSGKIPLEVTNLKVLQSVNLSN 361
L L +R +D S ++ S L++ NL LQS+NLS
Sbjct: 337 KRLELGTGCL-----------ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 362 NFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS-MSSLKFLNHLNLSNNNLTGKIPSS 419
N E+ LE +D + +L + QS +L L LNLS++ L
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-31
Identities = 72/421 (17%), Positives = 129/421 (30%), Gaps = 62/421 (14%)
Query: 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQK--HLNYLDLSYSGIIGTIPNIFWS-S 60
+ +L L + L P +F
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252
Query: 61 ASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLIS--SYLIELDFSNNS 117
+ ++L + N + L+ L L + S + S L +L S N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312
Query: 118 ISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM-NYQNLMILDLSNNKFT--GNL 174
+ L + GN + EL + N +NL LDLS++
Sbjct: 313 FENLCQISA----SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368
Query: 175 PISLGSLISLQSLHLRKNNLCG-TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIV 233
+ L +L LQSL+L N + + C L LD+ L + +
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 234 VLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQY 293
VL L + + L LQ ++L N+ + ++L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL---------------- 472
Query: 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKV 353
+TL + I+ S + S T+LK+
Sbjct: 473 -------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKM 501
Query: 354 LQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
+ V+LS+N T E++ ++ + ++ + N +S +P + L +NL N L
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Query: 414 G 414
Sbjct: 561 C 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 62/404 (15%), Positives = 126/404 (31%), Gaps = 38/404 (9%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNS 96
L+ S++ + F S + LDL+ QI+ + + +L+ L L +N
Sbjct: 34 STECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
Query: 97 FSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC 153
L L F IS F + + + LYL N +
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPL----HNQKTLESLYLGSNHISSIKLPK 148
Query: 154 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQ--SLHLRKNNLCGTIHSLENCTALMTLD 211
+ L +LD NN + SL SL+L N++ G + +L+
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208
Query: 212 VGENELVENIPTWIR-ERFSRIVVLILRSNKFYNLLPKELCDLAF--LQIVDLADNNLSG 268
G + + I ++ + + ++ P L ++ ++L +
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268
Query: 269 EVPRCIHNLRAMVTMNSHAGK--AIQYQF-------LLYASRAPLIATLLEDAFVVMKGR 319
H + ++ A + L S L + +
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISA------ 321
Query: 320 EAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFT--GRIPESVGTMR 376
+ + N ++ NL+ L+ ++LS++ + +
Sbjct: 322 -----SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
L+S++ S N+ ++ L L+L+ L K S
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-28
Identities = 53/382 (13%), Positives = 108/382 (28%), Gaps = 56/382 (14%)
Query: 42 LDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIA 100
+ G+ + S L+ SFN + + L L L
Sbjct: 17 YNCENLGLNEIPGTLPNS----TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-- 70
Query: 101 LPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160
++ E F + ++ L L+ N L + L
Sbjct: 71 ------WIHEDTFQS-----------------QHRLDTLVLTANPLIFMAETALSGPKAL 107
Query: 161 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVE 219
L + I L + +L+SL+L N++ L LD N +
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Query: 220 NIPTWIRE-RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR 278
+ + + + L L N + D A Q ++ + + + N
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226
Query: 279 AMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKN 338
+++ + F + V I+ K+
Sbjct: 227 I---------QSLWLGTFEDMD----DEDISPAVFEGLC---------EMSVESINLQKH 264
Query: 339 NFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSS 398
F LQ ++L+ + +P + + +L+ + S N+ S S+
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323
Query: 399 LKFLNHLNLSNNNLTGKIPSST 420
L HL++ N ++ +
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGC 345
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 32/243 (13%)
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG 268
T + L E IP + + L N + L L +DL +
Sbjct: 16 TYNCENLGLNE-IPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 269 EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328
+ + T+ L A+ + + E A
Sbjct: 72 IHEDTFQSQHRLDTLV------------LTANP---LIFMAETAL-----------SGPK 105
Query: 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388
++ + F + S + + N K L+S+ L +N + L+ +DF N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 389 SGEIPQSMSSLKFLNH--LNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCSE 446
+ MSSL+ + LNL+ N++ G P + F + +F G G +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225
Query: 447 HVS 449
+
Sbjct: 226 TIQ 228
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 14 QLATLGLRHCHL-GSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72
QL L L L S + L L+LS+S + + +F + L+L N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-DGLPALQHLNLQGN 459
Query: 73 QIHG----QIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHF 125
+ +L +LE+L L S + +D S+N ++ S
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 126 ICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN 173
+ K L L+ N + LP ++L N
Sbjct: 520 L-----SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-33
Identities = 51/460 (11%), Positives = 124/460 (26%), Gaps = 98/460 (21%)
Query: 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDL 69
+ + K L ++L + +P+ + ++ L++
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNI 522
Query: 70 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYR 129
+ N+ + +L + N++
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPK-----------IQIFYMGYNNLEEFP---ASAS 568
Query: 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS-LISLQSLH 188
++ K +L N ++ L + L L L N+ +P + ++ L
Sbjct: 569 LQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625
Query: 189 LRKNNLCG--TIHSLENCTALMTLDVGENELVENIPTWIRE----RFSRIVVLILRSNKF 242
N L I + ++ + ++D N++ + + L N+
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
Query: 243 YNLLPKELCDLAFLQIVDLADNNLS-------GEVPRCIHNLRAMVTMNSHAGKAIQYQF 295
+ + + + L++N ++ N +
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL--------------- 730
Query: 296 LLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP--LEVTNLKV 353
ID N + + T L
Sbjct: 731 -----------------------------------TTIDLRFNKLTS-LSDDFRATTLPY 754
Query: 354 LQSVNLSNNFFTGRIPESVGTMRSLESI------DFSLNQLSGEIPQSMSSLKFLNHLNL 407
L ++++S N F+ P L++ D N++ + P +++ L L +
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
Query: 408 SNNNLTGKIPSS--TQLQSFDASSFSGNDLCRAPLSGNCS 445
+N++ K+ QL D + N ++ C
Sbjct: 814 GSNDIR-KVDEKLTPQLYILD---IADNPNISIDVTSVCP 849
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-32
Identities = 58/456 (12%), Positives = 134/456 (29%), Gaps = 75/456 (16%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L + + ++ + Y+ + + + ++L
Sbjct: 449 KLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCP 502
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSFSIALPLISSY------------LIELDFSNNSISG 120
Q+P+ L + +L+ L++ N A L + + + N++
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Query: 121 SIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS 180
++ K +L N ++ L + L L L N+ +P +
Sbjct: 563 FP---ASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCA 616
Query: 181 -LISLQSLHLRKNNLCG--TIHSLENCTALMTLDVGENELVENIPTWIRE----RFSRIV 233
++ L N L I + ++ + ++D N++ +
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676
Query: 234 VLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS-------GEVPRCIHNLRAMVTMNSH 286
+ L N+ + + + + L++N ++ N + T
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT---- 732
Query: 287 AGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPL 346
+ L T L D F TL + +D S N FS P
Sbjct: 733 ----------IDLRFNKL--TSLSDDFRA---------TTLPYLSNMDVSYNCFSS-FPT 770
Query: 347 EVTNLKVLQSVNL------SNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK 400
+ N L++ + N + P + T SL + N + ++ + +
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TP 827
Query: 401 FLNHLNLSNNNLT-GKIPSSTQLQSFDASSFSGNDL 435
L L++++N + S +
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-30
Identities = 68/453 (15%), Positives = 131/453 (28%), Gaps = 75/453 (16%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L + + + + I +F ++ + DL +
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISS---------YLIELDFSNNSISGSIFH 124
I+ + P + + +SL I+ L + F+N+ +
Sbjct: 408 IN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN-- 464
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
W+ W N ++L ++L N LP L L L
Sbjct: 465 -------IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517
Query: 185 QSLHLRKNNLCGTIH----------SLENCTALMTLDVGENELVENIPTWIRERFSRIVV 234
QSL++ N + + +G N L E + ++ ++ +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 235 LILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294
L NK +L + L + L N + E+P V
Sbjct: 578 LDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG----------- 623
Query: 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP-----LEVT 349
L S L + + F +++ ++ +DFS N + ++
Sbjct: 624 --LGFSHNKL--KYIPNIFNA---------KSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670
Query: 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS-------GEIPQSMSSLKFL 402
+V LS N E T + +I S N ++ + + L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730
Query: 403 NHLNLSNNNLTGKIPSS------TQLQSFDASS 429
++L N LT + L + D S
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSY 762
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 58/423 (13%), Positives = 116/423 (27%), Gaps = 59/423 (13%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
++ L L R P + L L +F + + ++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHR 382
Query: 74 IHGQIPNLT-----NAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICY 128
I + ++L N P+ I L + + FI
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188
L K QI+Y + + + + + K N +S +L L +
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 189 LRKNNLCGTI-HSLENCTALMTLDVGENELV---------ENIPTWIRERFSRIVVLILR 238
L + L + L +L++ N + + + +I + +
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE-DTGPKIQIFYMG 556
Query: 239 SNKFYNL-LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL 297
N L + L ++D N + + L
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTD--------------L 600
Query: 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP--LEVTNLKVLQ 355
I + ED + V + FS N IP ++ V+
Sbjct: 601 KLDYN-QIEEIPEDFC-----------AFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647
Query: 356 SVNLSNNFFTGRIPE-----SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410
SV+ S N + ++ S N++ + ++ ++ + LSNN
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 411 NLT 413
+T
Sbjct: 708 LMT 710
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 3e-29
Identities = 71/410 (17%), Positives = 135/410 (32%), Gaps = 68/410 (16%)
Query: 50 IGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLISSYL 108
G P + + ++ L L+ G++P+ + +L+VLS G++S +++ L
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370
Query: 109 IELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNN 168
+ D S + + + + Q L + DL +
Sbjct: 371 LTPDMSEERK------------------HRIRMHYKKMFLDYD------QRLNLSDLLQD 406
Query: 169 KFTGNL---PISLGSLISLQSLHL--RKNNLCGTIHSLENCTALMTLDVGENELVENIPT 223
N PI S ISL+ + N + +++ T L + + +
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466
Query: 224 WIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTM 283
K Y +L L V+L + ++P +++L + ++
Sbjct: 467 ------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520
Query: 284 NSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343
N I + A++ T L D T ++I NN
Sbjct: 521 N------IACNRGISAAQLKADWTRLADDE-----------DTGPKIQIFYMGYNNLEE- 562
Query: 344 IPLEVT--NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM-SSLK 400
P + + L ++ +N E+ GT L + NQ+ EIP+ +
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619
Query: 401 FLNHLNLSNNNLTG-----KIPSSTQLQSFDASSFSGNDLCRAPLSGNCS 445
+ L S+N L S + S D FS N + + +CS
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD---FSYNKIGSEGRNISCS 666
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-27
Identities = 61/425 (14%), Positives = 123/425 (28%), Gaps = 49/425 (11%)
Query: 22 HCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNL 81
G + L + + L L+ G G +P+ +++ VL +
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGR-- 364
Query: 82 TNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141
G + + + I + + + R N + Q
Sbjct: 365 ---------LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ------RLNLSDLLQDAIN 409
Query: 142 SGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL 201
++ D ++ ++ I +L+N + ++ L LQ ++ +
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLTNR--ITFISKAIQRLTKLQIIYFANSPF----TYD 463
Query: 202 ENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDL 261
+ + EN + + L + LP L DL LQ +++
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSW-SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522
Query: 262 ADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREA 321
A N + + + G IQ Y L + M
Sbjct: 523 ACNRGIS-AAQLKADWTRLADDEDT-GPKIQI---FYMGYNNLEEFPASASLQKMV---- 573
Query: 322 KYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT-MRSLES 380
L ++D N + L + L N IPE +E
Sbjct: 574 ------KL-GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEG 623
Query: 381 IDFSLNQLSGEIPQ--SMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGNDLCR 437
+ FS N+L IP + S+ + ++ S N + + + S + + + S L
Sbjct: 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682
Query: 438 APLSG 442
+
Sbjct: 683 NEIQK 687
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 6e-25
Identities = 50/350 (14%), Positives = 112/350 (32%), Gaps = 49/350 (14%)
Query: 91 SLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGEL 150
+L ++ I++ + L+++ N + + L L+G +G +
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339
Query: 151 PDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS--LENCTALM 208
PD L +L + T + + ++ RK+ + L+ L
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL---PKELCDLAFLQIVDLADNN 265
D+ ++ + N ++ SRI + + N + K + L LQI+ A++
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459
Query: 266 LSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325
+ + A E ++ +K
Sbjct: 460 FTY-DNIAVDWEDANSDYAK-------------------QYENEELSWSNLK-------- 491
Query: 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG---------RIPESVGTMR 376
+L ++ ++P + +L LQS+N++ N R+ + T
Sbjct: 492 --DL-TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 377 SLESIDFSLNQLSGEIPQS--MSSLKFLNHLNLSNNNLTGKIPSSTQLQS 424
++ N L E P S + + L L+ +N + + +
Sbjct: 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 41/283 (14%), Positives = 92/283 (32%), Gaps = 31/283 (10%)
Query: 10 IPPF----QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIY 65
+ F +L L L + + + + L S++ + S +
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647
Query: 66 VLDLSFNQIHGQIPNLT------NAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNN 116
+D S+N+I + N++ ++L N + S + + SNN
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 117 SISG---SIFHFICYRANELNKWQILYLSGNFLQGELPDCWM--NYQNLMILDLSNNKFT 171
++ + + L N L L D + L +D+S N F+
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 172 GNLPISLGSLISLQSLHLRK------NNLCGTI-HSLENCTALMTLDVGENELVENIPTW 224
P + L++ +R N + + C +L+ L +G N++ +
Sbjct: 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824
Query: 225 IRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
+ ++ +L + N ++ +C + L +
Sbjct: 825 L---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 12/108 (11%), Positives = 37/108 (34%), Gaps = 2/108 (1%)
Query: 338 NNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMS 397
+ + + +++ N + ++L+ GR+P+++G + L+ + F + +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 398 SLKFLNHLNLSNNNLTGKIPSST--QLQSFDASSFSGNDLCRAPLSGN 443
+ + + Q + S + + R P
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 9/88 (10%), Positives = 24/88 (27%)
Query: 356 SVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415
+ N + + + + + + + G +P ++ L L L+ ++ T
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 416 IPSSTQLQSFDASSFSGNDLCRAPLSGN 443
+ S R
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKM 390
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 7e-29
Identities = 69/419 (16%), Positives = 129/419 (30%), Gaps = 57/419 (13%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P +L + + + L+ L L + I + + ++V L
Sbjct: 180 PQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238
Query: 72 NQIHGQIP----------NLTNAAQLEVLSLGSNSFSIALPLIS--SYLIELDFSNNSIS 119
+ + L + E +N FS + + + + + SI
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298
Query: 120 GSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLG 179
+ + KWQ L + L+ + P + L L L+ NK + +
Sbjct: 299 -YLEDVP-----KHFKWQSLSIIRCQLK-QFPTLDLP--FLKSLTLTMNKGS--ISFKKV 347
Query: 180 SLISLQSLHLRKNNL----CGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVL 235
+L SL L L +N L C + L +L LD+ N + + + L
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSANFMG-LEELQHL 404
Query: 236 ILRSNKFYNLLPKE-LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294
+ + + L L +D++ N + L ++ T
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT------------ 452
Query: 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVL 354
L + L + F + +D SK L L
Sbjct: 453 --LKMAGNSFKDNTLSNVF-----------ANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499
Query: 355 QSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
Q +N+S+N + SL ++D S N++ K L NL+NN++
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 74/437 (16%), Positives = 138/437 (31%), Gaps = 32/437 (7%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L C + + + HL+ L L+ + I P F S + + L +
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETK 115
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSF-SIALPLI---SSYLIELDFSNNSISGSIFHFICY 128
+ + L+ L++ N S LP + L+ +D S N I + + +
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSL 187
L +S N + + L L L N + N+ L +L L
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234
Query: 188 HLRKNNLCG----TIHSLENCTALMTLDVGENELVENIPTWIRER----FSRIVVLILRS 239
L I L + + E L + + + L
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294
Query: 240 NKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYA 299
L +++ Q + + L + L+ +T+ + G + L
Sbjct: 295 VSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK-SLTLTMNKGSISFKKVAL-- 349
Query: 300 SRAPLIATL-LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVN 358
P ++ L L + G + + N +R +D S N + L+ LQ ++
Sbjct: 350 ---PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD 405
Query: 359 LSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP 417
++ S ++ L +D S + L LN L ++ N+
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 418 SS-----TQLQSFDASS 429
S+ T L D S
Sbjct: 466 SNVFANTTNLTFLDLSK 482
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-27
Identities = 64/437 (14%), Positives = 130/437 (29%), Gaps = 56/437 (12%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L S + L L+++++ I ++S+ + + +DLS+N
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 74 IHGQIP----NLTN-AAQLEVLSLGSNSFSI--ALPLISSYLIELDFSNNSISGSIFHFI 126
I L L + N L EL N S +I
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Query: 127 CYRANELNKWQILYLSGNFLQGEL------PDCWMNYQNLMI--LDLSNNKFTGNLPISL 178
L + L + E P ++ I L+ + +
Sbjct: 225 L---QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281
Query: 179 GSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILR 238
L ++ ++ L ++ + + +L + +L + + L L
Sbjct: 282 HCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLT 336
Query: 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLY 298
NK + + L L +DL+ N LS +L ++++ L
Sbjct: 337 MNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDL---------GTNSLRH---LD 382
Query: 299 ASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSV 357
S ++ F L ++ +DF + +L+ L +
Sbjct: 383 LSFNGA--IIMSANF-----------MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 358 NLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM-SSLKFLNHLNLSNNNLTGKI 416
++S + SL ++ + N ++ ++ L L+LS L
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489
Query: 417 PSS----TQLQSFDASS 429
+LQ + S
Sbjct: 490 WGVFDTLHRLQLLNMSH 506
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-24
Identities = 85/421 (20%), Positives = 134/421 (31%), Gaps = 65/421 (15%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNS 96
+DLS++ + F S+ S++ LDLS +I L L L N
Sbjct: 33 STKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 97 FS-IALPLIS--SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG-ELPD 152
+ S + L L ++ I +L + L ++ NF+ +LP
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIG----QLITLKKLNVAHNFIHSCKLPA 147
Query: 153 CWMNYQNLMILDLSNNKFTGNLPISLGSL----ISLQSLHLRKNNLCGTIHSLENCTALM 208
+ N NL+ +DLS N L L SL + N + L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL---------LPKELCDLAFLQIV 259
L + N NI + + + V L +F + + + LCD+ +
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF- 266
Query: 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR 319
L N + H L + M+ L S I L +
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMS-----------LAGVS----IKYLEDVPK------ 305
Query: 320 EAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLE 379
+ + + L++ LK L L+ N + I + SL
Sbjct: 306 -------HFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGS--ISFKKVALPSLS 353
Query: 380 SIDFSLNQLSGEIPQSMSSLKF--LNHLNLSNNNLT---GKIPSSTQLQSFDASSFSGND 434
+D S N LS S S L L HL+LS N +LQ D F +
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD---FQHST 410
Query: 435 L 435
L
Sbjct: 411 L 411
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 77/428 (17%), Positives = 132/428 (30%), Gaps = 35/428 (8%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P + L L + L +LDLS I + + L L+
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTG 89
Query: 72 NQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFIC 127
N I P + LE L + L +L+ ++N I
Sbjct: 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149
Query: 128 YRANELNKWQILYLSGNFLQG----ELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 183
L + LS N++Q +L N Q + LD+S N + I
Sbjct: 150 SNLTNL---VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205
Query: 184 LQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVEN-----IPTWIRERFSRIVVLI 236
L L LR N I L+N L + E + I E + +
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 237 LR--SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294
R ++ + LA + + LA ++ H +++ K
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL 325
Query: 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKV- 353
L + L +F + L + +D S+N S ++L
Sbjct: 326 DLPFLKSLTLTMNKGSISFK---------KVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 354 -LQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM-SSLKFLNHLNLSNNN 411
L+ ++LS N + + + L+ +DF + L S SL+ L +L++S N
Sbjct: 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 412 LTGKIPSS 419
Sbjct: 436 TKIDFDGI 443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 7e-22
Identities = 65/391 (16%), Positives = 119/391 (30%), Gaps = 46/391 (11%)
Query: 42 LDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFS-I 99
+ +I S +DLSFN + +N ++L+ L L I
Sbjct: 16 YQCMDQKLSKVPDDIPSS----TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 100 ALPLIS--SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157
+L L + N I + L + L L
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSF----SGLTSLENLVAVETKLASLESFPIGQL 127
Query: 158 QNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNL----CGTIHSLENCTA-LMTLD 211
L L++++N LP +L +L + L N + + L ++LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Query: 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC-DLAFLQIVDLADNNLSGEV 270
+ N + + I + + L LR N + + K +LA L + L E
Sbjct: 188 MSLNPI-DFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 271 PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330
I M + + + + F L V
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTN-------DFSDDIVKF-----------HCLANV 287
Query: 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390
+ + + +V QS+++ P + L+S+ ++N+ S
Sbjct: 288 SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGS- 341
Query: 391 EIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQ 421
I +L L++L+LS N L+ S
Sbjct: 342 -ISFKKVALPSLSYLDLSRNALSFSGCCSYS 371
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 9e-21
Identities = 59/371 (15%), Positives = 106/371 (28%), Gaps = 21/371 (5%)
Query: 76 GQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNK 135
G + S I S +D S N + + + ++
Sbjct: 2 GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF----SNFSE 57
Query: 136 WQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLC 195
Q L LS ++ W +L L L+ N P S L SL++L + L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 196 GTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLA 254
+ L L+V N + + +V + L N + +L L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 255 FLQIV----DLADNNLSGEVPRCIHNLRAMVTMNSHAGK-----AIQYQFLLYASRAPLI 305
V D++ N + + ++ Q L LI
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237
Query: 306 ATLLEDAFVVMKGREAKYERTLNL-VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364
+D + + E ++ + + N ++ L + +++L+
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
Query: 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS 424
E V +S+ QL + LK L L+ N + L S
Sbjct: 298 KY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK---SLTLTMNKGSI-SFKKVALPS 351
Query: 425 FDASSFSGNDL 435
S N L
Sbjct: 352 LSYLDLSRNAL 362
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 62/424 (14%), Positives = 138/424 (32%), Gaps = 17/424 (4%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+ + L S S ++ LDLS + + + +++ +L+LS N
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV 69
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANEL 133
++ + +L + + L L L +N L S + L +NN+IS +
Sbjct: 70 LY-ETLDLESLSTLRTLDLNNNYVQELLVGPS--IETLHAANNNISRV-------SCSRG 119
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKN 192
+ +YL+ N + + LDL N+ N S +L+ L+L+ N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
+ + L TLD+ N+L + + + + + LR+NK + K L
Sbjct: 180 FI-YDVKGQVVFAKLKTLDLSSNKL-AFMGPEF-QSAAGVTWISLRNNKLVLI-EKALRF 235
Query: 253 LAFLQIVDLADNNLS-GEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311
L+ DL N G + + + T+ K + Q + L
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371
+ + + + + + ++ E N + ++ + I +
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355
Query: 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFS 431
++ +++ L ++ + L+ ++ +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415
Query: 432 GNDL 435
Sbjct: 416 VKRY 419
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 46/307 (14%), Positives = 103/307 (33%), Gaps = 39/307 (12%)
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
N+++I ++ + L+ L + N+ LDLS N + L L+ L+L N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
L LE+ + L TLD+ N + E + I L +N + +
Sbjct: 69 VL-YETLDLESLSTLRTLDLNNNYVQE-LLV-----GPSIETLHAANNNI-SRVSCSR-- 118
Query: 253 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312
+ + LA+N ++ + ++ L + I T+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD------------LKLNE---IDTVNFAE 163
Query: 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372
+ + + ++ N + + L++++LS+N +
Sbjct: 164 LA----------ASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEF 210
Query: 373 GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432
+ + I N+L I +++ + L H +L N ++ + +
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 433 NDLCRAP 439
+ +
Sbjct: 270 QTVKKLT 276
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 53/291 (18%), Positives = 96/291 (32%), Gaps = 48/291 (16%)
Query: 150 LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG-TIHSLENCTALM 208
+ + N I ++++ L S +++ L L N L + L T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG 268
L++ N L E + S + L L +N +EL ++ + A+NN+S
Sbjct: 62 LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 269 EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328
+ +Y + I L + +
Sbjct: 114 VSCSRGQGKKN-----------------IYLANNK-ITMLRDLDE-----------GCRS 144
Query: 329 LVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387
V+ +D N + L+ +NL NF + V L+++D S N+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK 202
Query: 388 LSGEIPQSMSSLKFLNHLNLSNNNLT---GKIPSSTQLQSFDASSFSGNDL 435
L+ + S + ++L NN L + S L+ FD GN
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD---LRGNGF 249
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 31/270 (11%), Positives = 74/270 (27%), Gaps = 5/270 (1%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+ + LR+ L L ++L + DL +G F+S ++ + +
Sbjct: 215 GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSI---SGSIFHFICYRA 130
N + G+ + LI L +++ GS +
Sbjct: 274 -KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332
Query: 131 NELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190
+ + + + + + Q + L+ + + L +
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392
Query: 191 KNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250
H+ E + L L E + + I + +K L +
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENA 452
Query: 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAM 280
DLA + + + + + +
Sbjct: 453 RLKKLNGEADLALASANATLQELVVREQNL 482
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-26
Identities = 87/423 (20%), Positives = 154/423 (36%), Gaps = 60/423 (14%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
Q+ TL + S + +L ++ S + + I + + +++ + ++ NQ
Sbjct: 47 QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD-ITPL--KNLTKLVDILMNNNQ 101
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANE 132
I I L N L L+L +N + PL + + L L+ S+N+IS +
Sbjct: 102 IAD-ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA------LSG 154
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
L Q L + N L LD+S+NK + L L +L+SL N
Sbjct: 155 LTSLQQLSFGNQVTDLKPLA---NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 209
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
+ I L T L L + N+L ++I T + + L L +N+ NL P L
Sbjct: 210 QISD-ITPLGILTNLDELSLNGNQL-KDIGTL--ASLTNLTDLDLANNQISNLAP--LSG 263
Query: 253 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312
L L + L N +S P + L A+ L + L
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTN--------------LELNENQL-------- 299
Query: 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372
+ L + + NN S P+ +L LQ + NN + S+
Sbjct: 300 ------EDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSL 349
Query: 373 GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432
+ ++ + NQ+S P +++L + L L++ T + S + +
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407
Query: 433 NDL 435
Sbjct: 408 TGA 410
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-25
Identities = 75/396 (18%), Positives = 141/396 (35%), Gaps = 60/396 (15%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
+ L GI +I + + + ++ S NQ+ I L N +L + + +N
Sbjct: 46 DQVTTLQADRLGI-KSIDGV--EYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQ 101
Query: 97 FSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
+ PL + + L L NN I+ L L LS N +
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISD--ISALS 153
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
+L L N L +L +L+ L + N + I L T L +L N
Sbjct: 154 GLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNN 209
Query: 216 ELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIH 275
++ + P + + L L N+ ++ L L L +DLA+N +S P +
Sbjct: 210 QISDITPL---GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262
Query: 276 NLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335
L + L + + + L + ++
Sbjct: 263 GLTKLTE--------------LKLGANQI--SNISPL------------AGLTALTNLEL 294
Query: 336 SKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS 395
++N P+ NLK L + L N + P V ++ L+ + F N++S S
Sbjct: 295 NENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSS 348
Query: 396 MSSLKFLNHLNLSNNNLTGKIPSS--TQLQSFDASS 429
+++L +N L+ +N ++ P + T++ +
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 384
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 8e-21
Identities = 83/421 (19%), Positives = 143/421 (33%), Gaps = 59/421 (14%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L + + L P L + L + ++ + I I + ++ + + L L NQ
Sbjct: 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITPL--ANLTNLTGLTLFNNQ 123
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANE 132
I I L N L L L SN+ S L + L +L F N
Sbjct: 124 ITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL-------AN 175
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
L + L +S N + NL L +NN+ + LG L +L L L N
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN 231
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
L I +L + T L LD+ N++ P +++ L L +N+ N+ P L
Sbjct: 232 QL-KDIGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 285
Query: 253 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312
L L ++L +N L P I NL+ + + L + D
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLT-------------------LYFNNISDI 324
Query: 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372
V L ++ + F N S L NL + ++ +N + P +
Sbjct: 325 SPVSS---------LTKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHNQISDLTP--L 371
Query: 373 GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432
+ + + + + +++ N + L S S+ +
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS-DGGSYTEPDITW 430
Query: 433 N 433
N
Sbjct: 431 N 431
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 82/396 (20%), Positives = 144/396 (36%), Gaps = 63/396 (15%)
Query: 39 LNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 98
L ++ I I ++ ++ L + + T+ Q+ L
Sbjct: 3 LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIK 59
Query: 99 IALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157
+ + L +++FSNN ++ L K + ++ N + P N
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITPLA--NL 111
Query: 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL 217
NL L L NN+ T L +L +L L L N + I +L T+L L G N++
Sbjct: 112 TNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFG-NQV 167
Query: 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNL 277
+ P + + L + SNK ++ L L L+ + +N +S P + L
Sbjct: 168 TDLKPL---ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGIL 220
Query: 278 RAMVTMNSHAGKAIQYQFLLYASRAPL--IATLLEDAFVVMKGREAKYERTLNLVRIIDF 335
+ L + L I TL +L + +D
Sbjct: 221 TNLDE--------------LSLNGNQLKDIGTL----------------ASLTNLTDLDL 250
Query: 336 SKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS 395
+ N S PL L L + L N + + + +L +++ + NQL P
Sbjct: 251 ANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP-- 304
Query: 396 MSSLKFLNHLNLSNNNLTGKIPSS--TQLQSFDASS 429
+S+LK L +L L NN++ P S T+LQ +
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 340
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-18
Identities = 70/385 (18%), Positives = 120/385 (31%), Gaps = 59/385 (15%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L + S L L L + + + ++ + + LD+S N+
Sbjct: 135 NLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--VTDLKPL--ANLTTLERLDISSNK 188
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISG-SIFHFICYRAN 131
+ I L LE L +N S PL + L EL + N +
Sbjct: 189 VSD-ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-------A 240
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
L L L+ N + P L L L N+ + L L +L +L L +
Sbjct: 241 SLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 296
Query: 192 NNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC 251
N L I + N L L + N + + P +++ L +NK ++ L
Sbjct: 297 NQLED-ISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSDV--SSLA 350
Query: 252 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311
+L + + N +S P + NL + L + +
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQ--------------LGLNDQAWTNAPVN- 393
Query: 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKI-PLEVTNLKVLQSVNLSNNFFTGRIPE 370
V I + KN I P +++ +++ N + E
Sbjct: 394 --------------YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNE 438
Query: 371 SVGTMRSLESIDFSLNQLSGEIPQS 395
T +I SG + Q
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVTQP 463
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 40/249 (16%), Positives = 92/249 (36%), Gaps = 44/249 (17%)
Query: 183 SLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242
L S + ++ I + M +G+ + + + + ++ L
Sbjct: 2 PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI 58
Query: 243 YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302
++ + L L ++ ++N L+ P + NL +V +
Sbjct: 59 KSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL------------------ 96
Query: 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN 362
+ + D + L + + N + PL+ NL L + LS+N
Sbjct: 97 -MNNNQIADITPLAN---------LTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSN 144
Query: 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG--KIPSST 420
+ ++ + SL+ + F NQ++ P +++L L L++S+N ++ + T
Sbjct: 145 TISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLT 199
Query: 421 QLQSFDASS 429
L+S A++
Sbjct: 200 NLESLIATN 208
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 68/402 (16%), Positives = 140/402 (34%), Gaps = 60/402 (14%)
Query: 15 LATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQI 74
ATL + FP L + + + I L ++ ++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56
Query: 75 HGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANEL 133
I + LE L+L N + PL + L L N I+ I L
Sbjct: 57 A-SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISAL-----QNL 109
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193
+ LYL+ + + N + L+L N +L L ++ L L + ++
Sbjct: 110 TNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166
Query: 194 LCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
+ + + N T L +L + N++ + P + + N+ ++ P + ++
Sbjct: 167 V-KDVTPIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VANM 220
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPL--IATLLED 311
L + + +N ++ P + NL + L + I +
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTW--------------LEIGTNQISDINAV--- 261
Query: 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371
+ L +++++ N S L NL L S+ L+NN E
Sbjct: 262 -------------KDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEV 306
Query: 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
+G + +L ++ S N ++ P ++SL ++ + +N +
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 8e-21
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 28/266 (10%)
Query: 10 IPPF----QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIY 65
I P +L L + + S L + +L L L+ I I + ++ +++Y
Sbjct: 81 ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD-ISPL--ANLTKMY 135
Query: 66 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFH 124
L+L N + L+N L L++ + P+ + + L L + N I I
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-DISP 194
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
L N + P M L L + NNK T L +L L
Sbjct: 195 L-----ASLTSLHYFTAYVNQITDITPVANM--TRLNSLKIGNNKITD--LSPLANLSQL 245
Query: 185 QSLHLRKNNLCGTIHSLENCTALMTLDVGENEL--VENIPTWIRERFSRIVVLILRSNKF 242
L + N + I+++++ T L L+VG N++ + + S++ L L +N+
Sbjct: 246 TWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQISDISVL-----NNLSQLNSLFLNNNQL 299
Query: 243 YNLLPKELCDLAFLQIVDLADNNLSG 268
N + + L L + L+ N+++
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITD 325
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 51/324 (15%), Positives = 110/324 (33%), Gaps = 53/324 (16%)
Query: 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSN 167
L I+ IF +L + L + + + ++ L ++
Sbjct: 2 AATLATLPAPIN-QIFPD-----ADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAG 53
Query: 168 NKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRE 227
K ++ + L +L+ L+L N + I L N L L +G N++ +I +
Sbjct: 54 EKVA-SIQ-GIEYLTNLEYLNLNGNQI-TDISPLSNLVKLTNLYIGTNKI-TDISAL--Q 107
Query: 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHA 287
+ + L L + ++ P L +L + ++L N+ + N+ + +
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLT--- 161
Query: 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLE 347
+ + ++D + L + + + N PL
Sbjct: 162 ----------------VTESKVKDVTPI---------ANLTDLYSLSLNYNQIEDISPLA 196
Query: 348 VTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407
+L L N T V M L S+ N+++ P +++L L L +
Sbjct: 197 --SLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250
Query: 408 SNNNLTG--KIPSSTQLQSFDASS 429
N ++ + T+L+ + S
Sbjct: 251 GTNQISDINAVKDLTKLKMLNVGS 274
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386
L K + + + E L+ + + ++ + + + +LE ++ + N
Sbjct: 21 LAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN 76
Query: 387 QLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435
Q++ P +S+L L +L + N +T I + L + + +++
Sbjct: 77 QITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNI 122
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 79/399 (19%), Positives = 129/399 (32%), Gaps = 43/399 (10%)
Query: 66 VLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNNSIS 119
L LSFN I + QL++L LGS + + + L LD ++ I
Sbjct: 28 RLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86
Query: 120 G---SIFHFICYRANELNKWQILYLSGNFLQGEL--PDCWMNYQNLMILDLSNNKFTG-N 173
F L L L L + + N + L LDLS N+
Sbjct: 87 FLHPDAFQG-------LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Query: 174 LPISLGSLISLQSLHLRKNNL----CGTIHSLENCTALMTLDVGENELVENIPTWIRERF 229
L S G L SL+S+ N + + L+ T L + N L + +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCM 198
Query: 230 SRIVVLILRSNKF-YNLLPKELCDLAFLQIVDLADNNLSG----EVPRCIHNLRAMVTMN 284
+ ++L N ++ I +L + N
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKI 344
+ AG A L S + +L F TL +++++ + N +
Sbjct: 259 TFAGLARSSVRHLDLSHG-FVFSLNSRVF-----------ETLKDLKVLNLAYNKINKIA 306
Query: 345 PLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNH 404
L LQ +NLS N + + + ID N ++ Q+ L+ L
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 405 LNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGN 443
L+L +N LT I + S L + L+ N
Sbjct: 367 LDLRDNALT-TIHFIPSIPDIFLSGNKLVTLPKINLTAN 404
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 85/457 (18%), Positives = 159/457 (34%), Gaps = 51/457 (11%)
Query: 14 QLATLGLRHCHLGSRF--PSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
L L L C L + + K L LDLS + I + + + + +D S
Sbjct: 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157
Query: 72 NQIH----GQIPNLTNAAQLEVLSLGSNS---------FSIALPLISSYLIELDFSNNSI 118
NQI ++ L L SL +NS P + L LD S N
Sbjct: 158 NQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Query: 119 SGSIFHFIC--------YRANELNKWQILYLSGNFLQGELPDCWMNYQ--NLMILDLSNN 168
+ I + + + ++ + + ++ LDLS+
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276
Query: 169 KFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMTLDVGENELVENIPTWIR 226
+L L+ L+L N + I + L L++ N L E + +
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNF 334
Query: 227 ERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSH 286
++ + L+ N + + L LQ +DL DN L+ IH + ++ +
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIF-- 387
Query: 287 AGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKY-ERTLNLVRIIDFSKNNFSGKIP 345
+ L+ + L A L+ + ++ + Y + ++I+ ++N FS
Sbjct: 388 ----LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCS 442
Query: 346 LEVT--NLKVLQSVNLSNNFFTGRIPESV-----GTMRSLESIDFSLNQLSGEIPQSMSS 398
+ T L+ + L N + + L+ + + N L+ P S
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502
Query: 399 LKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435
L L L+L++N LT + + + + S N L
Sbjct: 503 LTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQL 538
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-23
Identities = 82/460 (17%), Positives = 141/460 (30%), Gaps = 64/460 (13%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGI-IGTIPNIFWSSASQIYVLDLSFN 72
L L L + P HL L L + G+ + + ++ + + LDLS N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 73 QIHGQIPN--LTNAAQLEVLSLGSNSFSIA-----LPLISSYLIELDFSNNSISG--SIF 123
QI + L+ + SN + PL L + NS+ S+
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDC------------WMNYQNLMILDLSNNKFT 171
C +IL +SGN ++ + ++M +
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 172 GNLPISLGSL--ISLQSLHLRKNNLCG-TIHSLENCTALMTLDVGENELVENIPTWIRER 228
+ L S++ L L + E L L++ N++ I
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYG 312
Query: 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN---- 284
+ VL L N L L + +DL N+++ + L + T++
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Query: 285 ----SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340
H +I FL + TL + +I S+N
Sbjct: 373 ALTTIHFIPSIPDIFLSGNK----LVTLPKINL---------------TANLIHLSENRL 413
Query: 341 SG-KIPLEVTNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSM-- 396
I + + LQ + L+ N F+ + SLE + N L +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473
Query: 397 ---SSLKFLNHLNLSNNNLT----GKIPSSTQLQSFDASS 429
L L L L++N L G T L+ +S
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-19
Identities = 69/459 (15%), Positives = 150/459 (32%), Gaps = 60/459 (13%)
Query: 14 QLATLGLRHCHLGS-RFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWS-SASQIYVLDLSF 71
L L L + S L +D S + I + + L+
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 72 NQIHGQIP-------NLTNAAQLEVLSLGSNSFSIALP---------------LISSYLI 109
N ++ ++ N LE+L + N +++ + +++ +++
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 110 ELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166
F + + F + + + L LS F+ + ++L +L+L+
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLA-----RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMTLDVGENELVENIPTW 224
NK + L +LQ L+L N L G ++ + + +D+ +N + I
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHI-AIIQDQ 356
Query: 225 IRERFSRIVVLILRSNK---FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 281
+ ++ L LR N + + L+ ++V L NL+ + N +
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416
Query: 282 TMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFS 341
+ + Q L+ ++ D + + +N
Sbjct: 417 DILYFLLRVPHLQILILNQN--RFSSCSGDQTPSE----------NPSLEQLFLGENMLQ 464
Query: 342 GKIPLEV-----TNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396
E+ L LQ + L++N+ P + +L + + N+L+ + +
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN- 522
Query: 397 SSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435
L L++S N L P+ S + N
Sbjct: 523 DLPANLEILDISRNQLL--APNPDVFVSLSVLDITHNKF 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 3e-19
Identities = 71/406 (17%), Positives = 130/406 (32%), Gaps = 68/406 (16%)
Query: 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSA-SQIYVLDLSF 71
+ + G + L H+ + I N F A S + LDLS
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275
Query: 72 NQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLISSYLI---ELDFSNNSISGSIFHFIC 127
+ L+VL+L N + L L+ S N +
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG----ELYS 331
Query: 128 YRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSL 187
L K + L N + + + L LDL +N T ++ + S+ +
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDI 386
Query: 188 HLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP 247
L N L T+ + + + EN L + R + +LIL N+F +
Sbjct: 387 FLSGNKL-VTLPKINLT--ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 248 KELC-DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIA 306
+ + L+ + L +N L +
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELC------------------------------- 472
Query: 307 TLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366
D F L+ ++++ + N + P ++L L+ ++L++N T
Sbjct: 473 ---WDVF-----------EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT- 517
Query: 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
+ + +LE +D S NQL P SL L++++N
Sbjct: 518 VLSHND-LPANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKF 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 6e-16
Identities = 52/256 (20%), Positives = 85/256 (33%), Gaps = 36/256 (14%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L + LG + S Y + Y+DL + I I + + ++ LDL N
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 74 IHGQIPNLTN-----------------AAQLEVLSLGSNSFSIALPLIS----SYLIELD 112
+ I + + ++ L N L +L L
Sbjct: 374 LT-TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE-----LPDCWMNYQNLMILDLSN 167
+ N S +E + L+L N LQ D + +L +L L++
Sbjct: 433 LNQNRFSSCSGDQTP---SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 168 NKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRE 227
N P L +L+ L L N L + + L LD+ N + +
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRN----QLLAPNPD 544
Query: 228 RFSRIVVLILRSNKFY 243
F + VL + NKF
Sbjct: 545 VFVSLSVLDITHNKFI 560
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 51/370 (13%), Positives = 101/370 (27%), Gaps = 84/370 (22%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
L S + ++ S + Y D + + N N ++ + +
Sbjct: 12 SGRENLYFQGSTALRPYHDVL-SQWQRHYNADRNRWHSAWRQANSNN---PQIETRTGRA 67
Query: 97 FSIALPLI----SSYLIELDFSNNSIS---GSIFHFICYRANELNKWQILYLSGNFLQGE 149
L+ + L+ + + F L+ Q + + L E
Sbjct: 68 LKATADLLEDATQPGRVALELRSVPLPQFPDQAF--------RLSHLQHMTIDAAGLM-E 118
Query: 150 LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL----------CGTIH 199
LPD + L L L+ N LP S+ SL L+ L +R
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 200 SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIV 259
+ L +L + + +P I + L +R++ L + L L+ +
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASI-ANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEEL 234
Query: 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR 319
DL P +
Sbjct: 235 DLRGCTALRNYPPIFGGRAPL--------------------------------------- 255
Query: 320 EAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLE 379
+ L L + +PL++ L L+ ++L R+P + + +
Sbjct: 256 -----KRLIL------KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
Query: 380 SIDFSLNQLS 389
I + +
Sbjct: 305 IILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-21
Identities = 49/346 (14%), Positives = 100/346 (28%), Gaps = 60/346 (17%)
Query: 79 PNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQI 138
+ +++ E L ++ + S ++ + S + N QI
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQI 60
Query: 139 LYLSGNFLQGELPDCWMNYQ--NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
+G L+ D + + L+L + P L LQ + + L
Sbjct: 61 ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME 118
Query: 197 TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFL 256
+++ L TL + N L LP + L L
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRA--------------------------LPASIASLNRL 152
Query: 257 QIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFL--LYASRAPLIATLLEDAFV 314
+ + + E+P + + A L L + L +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQ-------GLVNLQSLRLEWTGI--RSLPASIA 203
Query: 315 VMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT 374
++ NL + + + S + + +L L+ ++L P G
Sbjct: 204 NLQ----------NL-KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 375 MRSLESIDFS-LNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419
L+ + + L +P + L L L+L ++PS
Sbjct: 252 RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 22/251 (8%)
Query: 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLG 93
+Q L+L + P+ S + + + + ++P+ + A LE L+L
Sbjct: 79 TQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135
Query: 94 SNSFSIALP-----LISSYLIELDFSNNSISGSIFHFIC-----YRANELNKWQILYLSG 143
N ALP L L EL + + L Q L L
Sbjct: 136 RNPLR-ALPASIASLNR--LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 144 NFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLE 202
++ LP N QNL L + N+ + L ++ L L+ L LR
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 203 NCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLA 262
L L + + + +P I R +++ L LR + LP + L I+ +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV- 308
Query: 263 DNNLSGEVPRC 273
+L ++ +
Sbjct: 309 PPHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 5e-19
Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 29/277 (10%)
Query: 21 RHCHLGSRFPSWLYSQKHLNYL---DLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ 77
RH + + Q + N + + T + ++ L+L + Q
Sbjct: 37 RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95
Query: 78 IPN-LTNAAQLEVLSLGSNSFSIALP-----LISSYLIELDFSNNSISGSIFHFICYRAN 131
P+ + L+ +++ + LP L L + N + ++ I
Sbjct: 96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG--LETLTLARNPLR-ALPASIA---- 147
Query: 132 ELNKWQILYLSGN---------FLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182
LN+ + L + + NL L L +LP S+ +L
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206
Query: 183 SLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242
+L+SL +R + L ++ + L LD+ + N P + + LIL+
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSN 265
Query: 243 YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRA 279
LP ++ L L+ +DL +P I L A
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 45/289 (15%), Positives = 79/289 (27%), Gaps = 47/289 (16%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
+ L + L Q + N + N
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66
Query: 216 ELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIH 275
L V L LRS P + L+ LQ + + L E+P +
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124
Query: 276 NLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335
+ T L +R PL L + +LN +R +
Sbjct: 125 QFAGLET--------------LTLARNPL--RALPASI-----------ASLNRLRELSI 157
Query: 336 SKNNFSGKIPLEVTNLKV---------LQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386
++P + + LQS+ L +P S+ +++L+S+ +
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216
Query: 387 QLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS----TQLQSFDASSFS 431
LS + ++ L L L+L P L+ S
Sbjct: 217 PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 45/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L TL L L P+ + S L L + + +P L+
Sbjct: 128 GLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPE------------PLASTD 174
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALP-----LISSYLIELDFSNNSISGSIFHFICY 128
G+ L N L+ L L +LP L + L L N+ +S ++ I
Sbjct: 175 ASGEHQGLVN---LQSLRLEWTGIR-SLPASIANLQN--LKSLKIRNSPLS-ALGPAIH- 226
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188
L K + L L G P + L L L + LP+ + L L+ L
Sbjct: 227 ---HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 189 LRKNNLCGTI-HSLENCTALMTLDVGEN---ELVENIPT 223
LR + + A + V + +L ++ P
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 25/185 (13%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQ---------KHLNYLDLSYSGIIGTIPNIFWSSASQI 64
+L L +R C + P L S +L L L ++GI ++P ++ +
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNL 208
Query: 65 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALP-----LISSYLIELDFSNNSIS 119
L + + + P + + +LE L L + P L L + S
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP--LKRLILKDCSNL 266
Query: 120 GSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTG---NLPI 176
++ I L + + L L G LP I+ + + + P+
Sbjct: 267 LTLPLDIH----RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322
Query: 177 SLGSL 181
+ +
Sbjct: 323 ARPAE 327
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 9e-23
Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 16/255 (6%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+ + L S S ++ LDLS + + + +++ +L+LS N
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV 69
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANEL 133
++ + +L + + L L L +N L S + L +NN+IS + +
Sbjct: 70 LY-ETLDLESLSTLRTLDLNNNYVQELLVGPS--IETLHAANNNIS-RV------SCSRG 119
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKN 192
+ +YL+ N + + LDL N+ N S +L+ L+L+ N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
+ + L TLD+ N+L + + + + + LR+NK + K L
Sbjct: 180 FI-YDVKGQVVFAKLKTLDLSSNKL-AFMGPEF-QSAAGVTWISLRNNKLVL-IEKALRF 235
Query: 253 LAFLQIVDLADNNLS 267
L+ DL N
Sbjct: 236 SQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 9e-20
Identities = 45/307 (14%), Positives = 103/307 (33%), Gaps = 39/307 (12%)
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
N+++I ++ + L+ L + N+ LDLS N + L L+ L+L N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
L LE+ + L TLD+ N + + + I L +N + +
Sbjct: 69 VL-YETLDLESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNI-SRVSCSR-- 118
Query: 253 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312
+ + LA+N ++ + ++ L + I T+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD------------LKLNE---IDTVNFAE 163
Query: 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372
+ + + ++ N + + L++++LS+N +
Sbjct: 164 LA----------ASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEF 210
Query: 373 GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432
+ + I N+L I +++ + L H +L N ++ + +
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 433 NDLCRAP 439
+ +
Sbjct: 270 QTVKKLT 276
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 3e-18
Identities = 52/358 (14%), Positives = 103/358 (28%), Gaps = 67/358 (18%)
Query: 83 NAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142
N + ++ + +S AL + + + L LS
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNV-------------------------KELDLS 42
Query: 143 GNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLE 202
GN L + L +L+LS+N + L SL +L++L L N + L
Sbjct: 43 GNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY----VQELL 96
Query: 203 NCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLA 262
++ TL N + + R + L +NK L + + +Q +DL
Sbjct: 97 VGPSIETLHAANNNI-SRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 263 DNNLSG-EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREA 321
N + + + L I +
Sbjct: 153 LNEIDTVNFAELAASSDTLEH--------------LNLQYNF-IYDVKGQVV-------- 189
Query: 322 KYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESI 381
++ +D S N + + E + + ++L NN I +++ ++LE
Sbjct: 190 -----FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242
Query: 382 DFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAP 439
D N K ++ + + + + G C
Sbjct: 243 DLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 5e-18
Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 28/248 (11%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIH----GQIPNLTNAAQLEVLSL 92
++ S + + ++ SA + LDLS N + + T LE+L+L
Sbjct: 10 NRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTK---LELLNL 65
Query: 93 GSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELP 151
SN L L S S L LD +NN + + + L+ + N + +
Sbjct: 66 SSNVLYETLDLESLSTLRTLDLNNNYVQ-ELL--------VGPSIETLHAANNNIS-RVS 115
Query: 152 DCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG--TIHSLENCTALMT 209
Q + L+NNK T + G +Q L L+ N + + L
Sbjct: 116 CSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE 269
L++ N + ++ + F+++ L L SNK + E A + + L +N L
Sbjct: 174 LNLQYNFI-YDVKGQV--VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-L 228
Query: 270 VPRCIHNL 277
+ + +
Sbjct: 229 IEKALRFS 236
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 6e-14
Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 48/296 (16%)
Query: 150 LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG-TIHSLENCTALM 208
+ + N I ++++ L S +++ L L N L + L T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG 268
L++ N L E + E S + L L +N +EL ++ + A+NN+S
Sbjct: 62 LLNLSSNVLYETLDL---ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113
Query: 269 EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328
+ +Y + I L + +
Sbjct: 114 VSCSRGQGKKN-----------------IYLANNK-ITMLRDLDE-----------GCRS 144
Query: 329 LVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387
V+ +D N + L+ +NL NF + V L+++D S N+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202
Query: 388 LSGEIPQSMSSLKFLNHLNLSNNNLT---GKIPSSTQLQSFDASSFSGNDLCRAPL 440
L+ + S + ++L NN L + S L+ FD GN L
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD---LRGNGFHCGTL 254
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 3e-21
Identities = 76/452 (16%), Positives = 147/452 (32%), Gaps = 45/452 (9%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L C + + S HL+ L L+ + I F S S + L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETN 111
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSF-SIALPLI---SSYLIELDFSNNSISGSIFHFICY 128
+ + + L+ L++ N S LP + L LD S+N I +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSL 187
L LS N + + L L L NN + N+ + L L+
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 188 HLRKNNLCG-------TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L +LE L + L + I + F+ + + S
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL-DYYLDDIIDLFNCLT--NVSSF 287
Query: 241 KFYNLLPKELCDLAF---LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL 297
++ + + D ++ Q ++L + + +L+ + ++ G A L
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL- 346
Query: 298 YASRAPLIATL-LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQS 356
P + L L + KG ++ + ++ +D S N + L+ L+
Sbjct: 347 -----PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 400
Query: 357 VNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415
++ ++ SV ++R+L +D S + L L L ++ N+
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 416 IPSST---------------QLQSFDASSFSG 432
QL+ ++F+
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-19
Identities = 73/419 (17%), Positives = 129/419 (30%), Gaps = 58/419 (13%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNY----LDLSYSGIIGTIPNIFWSSASQIYVLDL 69
L L L + S + + L + LDLS + + P F +++ L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTL 207
Query: 70 SFNQIHGQIPN--LTNAAQLEVLSLGSNSF-----------SIALPLISSYLIELDFSNN 116
N + + A LEV L F S L + + E +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 117 SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPI 176
I N L L ++ + L+L N KF
Sbjct: 268 DYYLDD---IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQ---F 319
Query: 177 SLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE-NIPTWIRERFSRIVVL 235
L SL+ L N G S + +L LD+ N L + + + L
Sbjct: 320 PTLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 236 ILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCI-HNLRAMVTMNSHAGKAIQYQ 294
L N + L L+ +D +NL + +LR ++ ++
Sbjct: 379 DLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD---------- 427
Query: 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKV 353
+ + F L+ + ++ + N+F ++ T L+
Sbjct: 428 --ISHTH---TRVAFNGIF-----------NGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 354 LQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
L ++LS P + ++ SL+ ++ + NQL L L + L N
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 6e-19
Identities = 84/427 (19%), Positives = 144/427 (33%), Gaps = 44/427 (10%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNS 96
LDLS++ + F S ++ VLDLS +I + + L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 97 FSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ-GELPD 152
S L +L +++ I L + L ++ N +Q +LP+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPE 143
Query: 153 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ----SLHLRKNNLCGTIHSLENCTALM 208
+ N NL LDLS+NK L L + SL L N + L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN------LLPKELCDLAFLQIVDLA 262
L + N N+ + + + V L +F N L L L I +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 263 DNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAK 322
L + I + ++S + ++ + + S L + K
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 323 YERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT--GRIPESVGTMRSLES 380
L ++ + F+ N +L L+ ++LS N + G +S SL+
Sbjct: 324 ----LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 381 IDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP---------------SSTQLQSF 425
+D S N + + + L+ L HL+ ++NL S T +
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 426 DASSFSG 432
F+G
Sbjct: 437 FNGIFNG 443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 5e-18
Identities = 79/452 (17%), Positives = 132/452 (29%), Gaps = 61/452 (13%)
Query: 14 QLATLGLRHCHLGS-RFPSWLYSQKHLNYLDLSYSGIIGTIPNIF---WSSASQIYVLDL 69
L L + H + S + P + + +L +LDLS + I LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 70 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALP------LISSYLIELDFSNNSISGSIF 123
S N ++ P +L L+L +N S+ + L + L G++
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 124 HFICYRANELNKWQILYLSGNFLQG---ELPDCWMNYQNLMILDLSNNKFTGNLPISLGS 180
F L I +L ++ D + N+ L + S
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-- 302
Query: 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
Q L L +L L N+ + L L N
Sbjct: 303 NFGWQHLELVNCKFGQ--FPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRN 357
Query: 241 K--FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLY 298
F + L+ +DL+ N + + L + L
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH--------------LD 402
Query: 299 ASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVN 358
+ L F +L + +D S + L L+ +
Sbjct: 403 FQHSNLKQMSEFSVF-----------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 359 LSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT---- 413
++ N F + +R+L +D S QL P + +SL L LN+++N L
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Query: 414 GKIPSSTQLQSFDASSFSGNDLCRAPLSGNCS 445
G T LQ N P +C
Sbjct: 512 GIFDRLTSLQKIW---LHTN-----PWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 80/431 (18%), Positives = 131/431 (30%), Gaps = 73/431 (16%)
Query: 43 DLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIAL 101
N+ +S LDLSFN + + +L+VL L
Sbjct: 13 QCMELNFYKIPDNLPFS----TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--- 65
Query: 102 PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLM 161
+I + L+ L L+GN +Q + +L
Sbjct: 66 ---------------TIEDGAYQ-------SLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 162 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL--CGTIHSLENCTALMTLDVGENELVE 219
L +G L +L+ L++ N + N T L LD+ N++
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 220 NIPTWIRERFS---RIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC--- 273
T +R + L L N N + L + L +N S V +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 274 ------IHNLRAMVTMNSHAGKAIQYQFL----------LYASRAPLIATLLEDAFVVMK 317
+H L N + L + + D F +
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 318 GREAKYERTLNLVRIIDFSKNNFSGKI--------PLEVTNLKVLQSVNLSNNFFTGRIP 369
+ ++ + R+ DFS N + LK L+ + ++N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 370 ESVGTMRSLESIDFSLNQLS--GEIPQSMSSLKFLNHLNLSNNNLT---GKIPSSTQLQS 424
E + SLE +D S N LS G QS L +L+LS N + QL+
Sbjct: 343 EV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400
Query: 425 FDASSFSGNDL 435
D F ++L
Sbjct: 401 LD---FQHSNL 408
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 52/399 (13%), Positives = 101/399 (25%), Gaps = 71/399 (17%)
Query: 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGI-----IGTIPNIF 57
+ +L L LR+ L L +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 58 WSSASQIYVLDLSFNQIHGQIPNLTNA----AQLEVLSLGSNSFSIALPLI-SSYLIELD 112
+ + + + + ++ + + SL S + + L+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT- 171
N + +L + L + N + + +L LDLS N +
Sbjct: 311 LVNCKFG-------QFPTLKLKSLKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSF 361
Query: 172 -GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFS 230
G S SL+ L L N + + L LD + L + +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 231 RIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA 290
++ L + L+ L+++ +A N+
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---------------------- 459
Query: 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350
L D F L + +D S+ P +
Sbjct: 460 ----------------NFLPDIF-----------TELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389
L LQ +N+++N + SL+ I N
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 41/220 (18%)
Query: 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288
L L N +L LQ++DL+ + +L + T+
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---- 82
Query: 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV 348
L + I +L AF L+ ++ + + N + +
Sbjct: 83 --------LTGNP---IQSLALGAF-----------SGLSSLQKLVAVETNLASLENFPI 120
Query: 349 TNLKVLQSVNLSNNFFT-GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFL----N 403
+LK L+ +N+++N ++PE + +LE +D S N++ + L +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 404 HLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGN 443
L+LS N + +F L + L N
Sbjct: 181 SLDLSLN----------PMNFIQPGAFKEIRLHKLTLRNN 210
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 5e-20
Identities = 53/360 (14%), Positives = 111/360 (30%), Gaps = 28/360 (7%)
Query: 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISG---SIFHFICYRANELNKWQILYLS 142
V S SF+ +++ + LD S N I+ Q+L L
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA-------CANLQVLILK 58
Query: 143 GNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLC--GTIHS 200
+ + D + + +L LDLS+N + G L SL+ L+L N G
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 201 LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVD 260
N T L TL +G E I + + L +++ N + L + + +
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178
Query: 261 LADNNLSGEVPRCIHNLRAMVTMN----------------SHAGKAIQYQFLLYASRAPL 304
L + + + L ++ + ++ +
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 305 IATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364
L + L + DF+ + L ++ +++ +
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298
Query: 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS 424
+ + ++ I +++ LK L L+LS N + + ++ +
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 65/421 (15%), Positives = 137/421 (32%), Gaps = 69/421 (16%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L+ + + YS L +LDLS + + ++ + ++ S + L+L N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNP 109
Query: 74 IHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
N L+ L +G+ S + +DF+
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNV-------ETFSEIRRIDFAG---------------- 146
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
L L + L+ + +++ L L ++ L I L S++ L LR
Sbjct: 147 -LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 192 NNLC----GTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVL---------ILR 238
NL + E + + L + L + + + I+ L +
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG-KAIQYQFLL 297
F + +L ++ V + ++ ++ + ++ +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIP-------QFYLFYDLSTVYSLLEKVKR---I 315
Query: 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKI---PLEVTNLKVL 354
+ + + + L + +D S+N + L
Sbjct: 316 TVENSK-VFLVPCSFS-----------QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363
Query: 355 QSVNLSNNFFT--GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
Q++ LS N + E + T+++L S+D S N +P S + + LNLS+ +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422
Query: 413 T 413
Sbjct: 423 R 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 65/422 (15%), Positives = 129/422 (30%), Gaps = 84/422 (19%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L ++ L + L S + +++L L S + IF S + L+L
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTN 207
Query: 74 I----HGQIPNLTNAAQLEVLSLGSNSFS-------IALPLISSYLIELDFSNNSISG-- 120
+ +P ++ ++ L+ + + + L L E++F + +++G
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267
Query: 121 -----SIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP 175
E + L++ +L +L + + + + + N+K
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327
Query: 176 ISLGSLISLQSLHLRKNNL----CGTIHSLENCTALMTLDVGENELVE-NIPTWIRERFS 230
L SL+ L L +N + +L TL + +N L I
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 231 RIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA 290
+ L + N F+ + P ++ ++L+ + V CI
Sbjct: 388 NLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIR-VVKTCI---------------- 429
Query: 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350
+ ++D S NN L +
Sbjct: 430 ------------------------------------PQTLEVLDVSNNNLD-SFSLFLPR 452
Query: 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410
L+ L +S N +P++ L + S NQL L L + L N
Sbjct: 453 LQEL---YISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 411 NL 412
Sbjct: 508 PW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 9e-15
Identities = 45/264 (17%), Positives = 86/264 (32%), Gaps = 50/264 (18%)
Query: 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72
+ L + +L + + + + + S + +P F + LDLS N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344
Query: 73 QIHGQIPN----LTNAAQLEVLSLGSNSFSIALPLISSY------LIELDFSNNSISGSI 122
+ + L+ L L N ++ L LD S N+
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTF---- 399
Query: 123 FHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182
H + K + L LS ++ + C Q L +LD+SNN + + L L
Sbjct: 400 -HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSLFLPRL- 453
Query: 183 SLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242
Q L++ +N + +L + + ++V+ + N+
Sbjct: 454 --QELYISRNK----LKTLPDASLF----------------------PVLLVMKISRNQL 485
Query: 243 YNLLPKELCDLAFLQIVDLADNNL 266
++ L LQ + L N
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 54/326 (16%), Positives = 116/326 (35%), Gaps = 49/326 (15%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
++L L N ++ D + ++ +L L+L+ N + P + +L +L++L LR N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-K 93
Query: 197 TIHS--LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLA 254
I + L LD+ EN++ + ++ + + L + N + + L
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 255 FLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFV 314
L+ + L NL+ + +L ++ + L I + + +F
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLR------------LRHLN---INAIRDYSF- 196
Query: 315 VMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV-G 373
+ L +++++ S + + L S+++++ T +P
Sbjct: 197 ----------KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245
Query: 374 TMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST------------- 420
+ L ++ S N +S + L L + L L +
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVS 304
Query: 421 --QLQSFDASSFSGND-LCRAPLSGN 443
QL + + S F L L N
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSN 330
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 72/380 (18%), Positives = 120/380 (31%), Gaps = 85/380 (22%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSN 95
LDL + I T+ ++S + L+L+ N + + N L L L SN
Sbjct: 33 ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90
Query: 96 SFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
I +F L+ L +S N + L +
Sbjct: 91 RLK------------------LIPLGVFT-------GLSNLTKLDISENKIVILLDYMFQ 125
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVG 213
+ NL L++ +N + L SL+ L L K NL +I +L + L+ L +
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLR 184
Query: 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
+ I + +R R+ VL + + + + L + + NL+ VP
Sbjct: 185 HLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP-- 240
Query: 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRII 333
A R L +R +
Sbjct: 241 ------------------------------------YLAV-----------RHLVYLRFL 253
Query: 334 DFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI 392
+ S N S I + L LQ + L P + + L ++ S NQL+
Sbjct: 254 NLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 393 PQSMSSLKFLNHLNLSNNNL 412
S+ L L L +N L
Sbjct: 313 ESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 4e-18
Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 39/287 (13%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P + L L + + S HL L+L+ + + + +++ + L L
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS 89
Query: 72 NQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFI 126
N++ IP T + L L + N I L + L L+ +N + +I
Sbjct: 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-----YI 143
Query: 127 CYRA-NELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185
+RA + LN + L L L + + L++L L + S L L+
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 186 SLHLRKNNLCGTIH-------------------------SLENCTALMTLDVGENELVEN 220
L + T+ ++ + L L++ N +
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-ST 262
Query: 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
I + R+ + L + + P L +L++++++ N L+
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 3e-17
Identities = 50/263 (19%), Positives = 101/263 (38%), Gaps = 19/263 (7%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L TLGLR L +L LD+S + I + + + + L++ N
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDND 139
Query: 74 IHGQIPN--LTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNNSISG-SIFHFI 126
+ I + + LE L+L + + ++P + LI L + +I+ + F
Sbjct: 140 LV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197
Query: 127 CYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 186
L + ++L +S + + NL L +++ T +++ L+ L+
Sbjct: 198 R-----LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 187 LHLRKNNLCGTIH--SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN 244
L+L N + TI L L + + +L + + + + VL + N+
Sbjct: 253 LNLSYNPI-STIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 245 LLPKELCDLAFLQIVDLADNNLS 267
L + L+ + L N L+
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 9e-16
Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 35/266 (13%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGENE 216
+LDL N+ S L+ L L +N + + N L TL + N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNR 91
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276
L IP + S + L + NK LL DL L+ +++ DN+L R
Sbjct: 92 LKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336
L ++ + L + ++ +A + L ++
Sbjct: 151 LNSLEQLT------------LEKCN---LTSIPTEALSHLH----------GL-IVLRLR 184
Query: 337 KNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS 395
N + I L L+ + +S+ + + + +L S+ + L+ +P
Sbjct: 185 HLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242
Query: 396 M-SSLKFLNHLNLSNNNLTGKIPSST 420
L +L LNLS N ++ I S
Sbjct: 243 AVRHLVYLRFLNLSYNPIS-TIEGSM 267
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 29/193 (15%)
Query: 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288
+ +L L N+ L E L+ ++L +N +S P +NL + T+
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG---- 86
Query: 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV 348
L ++R + + F L+ + +D S+N +
Sbjct: 87 --------LRSNR---LKLIPLGVF-----------TGLSNLTKLDISENKIVILLDYMF 124
Query: 349 TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407
+L L+S+ + +N I + SLE + L+ +++S L L L L
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Query: 408 SNNNLTGKIPSST 420
+ N+ I +
Sbjct: 184 RHLNIN-AIRDYS 195
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 1e-19
Identities = 70/385 (18%), Positives = 126/385 (32%), Gaps = 85/385 (22%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGS 94
+ + S + +P S Q+ +L+L+ QI +I A ++ L +G
Sbjct: 51 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 108
Query: 95 NSFSIALPLI---SSYLIELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQG 148
N+ P + L L N S+ IFH K L +S N L+
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH-------NTPKLTTLSMSNNNLER 161
Query: 149 ELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALM 208
D + +L L LS+N+ T + L + SL ++ N L +L A+
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL----STLAIPIAVE 214
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG 268
LD N + + + +L L+ N + L + L VDL+ N L
Sbjct: 215 ELDASHNSI-NVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE- 267
Query: 269 EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328
++ F +
Sbjct: 268 --------------------------------------KIMYHPF-----------VKMQ 278
Query: 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388
+ + S N + L + L+ ++LS+N + + LE++ N +
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336
Query: 389 SGEIPQSMSSLKFLNHLNLSNNNLT 413
+ S+ L +L LS+N+
Sbjct: 337 V-TLKL--STHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 5e-15
Identities = 52/349 (14%), Positives = 114/349 (32%), Gaps = 47/349 (13%)
Query: 78 IPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSIS---GSIFHFICYRANELN 134
+ + + + + + + + F N+++ ++
Sbjct: 23 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS-------FR 75
Query: 135 KWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 194
+ ++L L+ ++ + + L + N P ++ L L L +N+L
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 195 CG-TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
N L TL + N L E I + + + L L SN+ ++ + L
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
+++ N LS + A+ L AS I +
Sbjct: 195 FHA---NVSYNLLST-----LAIPIAVEE--------------LDASHNS-INVVRGPVN 231
Query: 314 VVMKG--------REAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFF 364
V + + + + +D S N KI ++ L+ + +SNN
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290
Query: 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
+ + +L+ +D S N L + ++ L +L L +N++
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 77/402 (19%), Positives = 143/402 (35%), Gaps = 38/402 (9%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L L S ++ L L +S + + I + + + + + L LS N+
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNR 182
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANEL 133
+ + L+ L ++ N S I+ + ELD S+NSI+ + R
Sbjct: 183 LT-HVD-LSLIPSLFHANVSYNLLSTLAIPIA--VEELDASHNSIN-VV------RGPVN 231
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193
+ IL L N L + +NY L+ +DLS N+ + + L+ L++ N
Sbjct: 232 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 194 LCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
L + L LD+ N L ++ +F R+ L L N L +L
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHL-LHVERNQ-PQFDRLENLYLDHNSIVTL---KLSTH 344
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
L+ + L+ N+ C + A + A + I LE
Sbjct: 345 HTLKNLTLSHNDWD-----CNSLRALFRNVARPA--------VDDADQHCKIDYQLEHGL 391
Query: 314 VVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373
+ + +R L + + + + + + SV +++ T + +
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEK--VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449
Query: 374 TMRSLE----SIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411
LE + + QL+ E Q L+ L+ +N
Sbjct: 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 50/312 (16%), Positives = 104/312 (33%), Gaps = 44/312 (14%)
Query: 105 SSYLIELDFSNNSISGSIFH-FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMIL 163
S+ + F + I + + LN +I+ + ++ +++ + +L
Sbjct: 21 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80
Query: 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVENI 221
+L++ + + ++Q L++ N + + H +N L L + N+L ++
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDL-SSL 138
Query: 222 PTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 281
P I ++ L + +N + LQ + L+ N L+ I +L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH-- 196
Query: 282 TMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFS 341
S L + L V +D S N+ +
Sbjct: 197 ---------------ANVSYNLL--STLAI---------------PIAVEELDASHNSIN 224
Query: 342 GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKF 401
+ L + L +N T + L +D S N+L + ++
Sbjct: 225 V---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 402 LNHLNLSNNNLT 413
L L +SNN L
Sbjct: 280 LERLYISNNRLV 291
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-19
Identities = 72/402 (17%), Positives = 128/402 (31%), Gaps = 97/402 (24%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+ ++ + + L S + + L+L+ I I ++ A I L + FN
Sbjct: 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNA 104
Query: 74 IHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
I +P N L VL L N S S+ IFH
Sbjct: 105 IR-YLPPHVFQNVPLLTVLVLERNDLS------------------SLPRGIFH------- 138
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
K L +S N L+ D + +L L LS+N+ T + L + SL ++
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY 195
Query: 192 NNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC 251
N + +L A+ LD N + + + +L L+ N + L
Sbjct: 196 NL----LSTLAIPIAVEELDASHNSI-NVVR---GPVNVELTILKLQHNNLTDT--AWLL 245
Query: 252 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311
+ L VDL+ N L ++
Sbjct: 246 NYPGLVEVDLSYNELE---------------------------------------KIMYH 266
Query: 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371
F + + + S N + L + L+ ++LS+N + +
Sbjct: 267 PF-----------VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313
Query: 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
LE++ N + + S+ L +L LS+N+
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 53/359 (14%), Positives = 116/359 (32%), Gaps = 47/359 (13%)
Query: 68 DLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSIS---GSIFH 124
+ I + + + + + + + + F N+++ ++
Sbjct: 7 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
+ ++L L+ ++ + + L + N P ++ L
Sbjct: 67 S-------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119
Query: 185 QSLHLRKNNLCG-TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
L L +N+L N L TL + N L E I + + + L L SN+
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 244 NLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP 303
++ + L +++ N LS + A+ L AS
Sbjct: 179 HVDLSLIPSLFHA---NVSYNLLS-----TLAIPIAVEE--------------LDASHNS 216
Query: 304 LIATLLEDAFVVMKG--------REAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVL 354
I + V + + + + +D S N KI ++ L
Sbjct: 217 -INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 274
Query: 355 QSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
+ + +SNN + + +L+ +D S N L + ++ L +L L +N++
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 33/225 (14%)
Query: 2 TLKVNDNWIPPFQLATL-GLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSS 60
L+++ N + L+ + L H ++ S L + LD S++ I +
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN--- 225
Query: 61 ASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNS 117
++ +L L N + L N L + L N + L L SNN
Sbjct: 226 -VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 118 I------------------SGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQN 159
+ S + + + ++ + LYL N + L +
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKL--STHHT 340
Query: 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL-CGTIHSLEN 203
L L LS+N + N +L ++ + + C + LE+
Sbjct: 341 LKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 9e-19
Identities = 52/281 (18%), Positives = 100/281 (35%), Gaps = 46/281 (16%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+ TL + +L + P+ L L++S + + ++P + ++ +
Sbjct: 62 HITTLVIPDNNL-TSLPALP---PELRTLEVSGNQLT-SLPVLP-PGLLELSIFSNPLTH 115
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANEL 133
+ L L + N + +LP++ L EL S+N ++
Sbjct: 116 LPALPSGLCK------LWIFGNQLT-SLPVLPPGLQELSVSDNQLAS--------LPALP 160
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193
++ L+ N L LP L L +S+N+ +LP L L + + R +
Sbjct: 161 SELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS 215
Query: 194 LCGTIHSLEN--------------CTALMTLDVGENELVENIPTWIRERFSRIVVLILRS 239
L L+ + L L V N L +P S ++ L +
Sbjct: 216 LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPMLP----SGLLSLSVYR 270
Query: 240 NKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAM 280
N+ L P+ L L+ V+L N LS + + + +
Sbjct: 271 NQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALREITSA 310
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 3e-18
Identities = 65/372 (17%), Positives = 125/372 (33%), Gaps = 70/372 (18%)
Query: 52 TIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIEL 111
+ + + VL++ + + +P+ A + L + N+ + +LP + L L
Sbjct: 30 VVQKMRACLNNGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNNLT-SLPALPPELRTL 86
Query: 112 DFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171
+ S N ++ S+ L + I L LP L L + N+ T
Sbjct: 87 EVSGNQLT-SLPVLPP----GLLELSIFSNPLTHLP-ALPS------GLCKLWIFGNQLT 134
Query: 172 GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSR 231
+LP+ L L + +L L L N+L ++P S
Sbjct: 135 -SLPVLPPGLQELSVSDNQLASLPALPSELCK------LWAYNNQL-TSLP----MLPSG 182
Query: 232 IVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291
+ L + N+ + LP +L L +N L+ +P L+
Sbjct: 183 LQELSVSDNQLAS-LPTLPSELYKL---WAYNNRLT-SLPALPSGLKE------------ 225
Query: 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNL 351
L S L T L + ++ + S N + +P+ + L
Sbjct: 226 -----LIVSGNRL--TSLPV--------------LPSELKELMVSGNRLT-SLPMLPSGL 263
Query: 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411
L ++ N T R+PES+ + S +++ N LS Q++ + +
Sbjct: 264 LSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319
Query: 412 LTGKIPSSTQLQ 423
S+ +
Sbjct: 320 FDMAGASAPRET 331
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 6e-16
Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 85/301 (28%)
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188
RA N +L + + L LPDC ++ L + +N T +LP L ++L
Sbjct: 35 RACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPEL---RTLE 87
Query: 189 LRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPK 248
+ N L L L + L + N+ +L P
Sbjct: 88 VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCK--------LWIFGNQLTSL-PV 138
Query: 249 ELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATL 308
L L ++DN L+ +P L
Sbjct: 139 LPPGLQEL---SVSDNQLA-SLPALPSELC------------------------------ 164
Query: 309 LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368
L N + +P+ + L+ L ++S+N +
Sbjct: 165 -----------------KLWA------YNNQLT-SLPMLPSGLQEL---SVSDNQLA-SL 196
Query: 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDAS 428
P + L + + N+L+ +P S LK L +S N LT ++L+ S
Sbjct: 197 PTLPSELYKLWAYN---NRLT-SLPALPSGLK---ELIVSGNRLTSLPVLPSELKELMVS 249
Query: 429 S 429
Sbjct: 250 G 250
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 8e-16
Identities = 72/417 (17%), Positives = 129/417 (30%), Gaps = 102/417 (24%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
A L + L + P L H+ L + + + ++P + ++ L++S NQ
Sbjct: 41 GNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALP----PELRTLEVSGNQ 92
Query: 74 IHGQIPN-LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANE 132
+ +P +L + S LP + S L +L N ++ S+
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWIFGNQLT-SL-------PVL 139
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
Q L +S N L LP L L NN+ T +LP+ L Q L + N
Sbjct: 140 PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPMLPSGL---QELSVSDN 191
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
L L L N L T + S + LI+ N+ LP +
Sbjct: 192 QLASLPTLPSE---LYKLWAYNNRL-----TSLPALPSGLKELIVSGNRL-TSLPVLPSE 242
Query: 253 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312
L L ++ N L+ +P L
Sbjct: 243 LKEL---MVSGNRLT-SLPMLPSGL----------------------------------- 263
Query: 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372
+L++ +N + ++P + +L +VNL N + R ++
Sbjct: 264 ------------LSLSV------YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA- 303
Query: 373 GTMRSLESIDFSLNQLS--GEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDA 427
+R + S + S HL ++ + + +
Sbjct: 304 --LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 28/206 (13%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P L L + L S P+ L L + + ++P + S + L +S
Sbjct: 140 PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPMLP----SGLQELSVSD 190
Query: 72 NQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
NQ+ +P L ++L L +N + +LP + S L EL S N ++ S+
Sbjct: 191 NQLA-SLPTL--PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLT-SLP-------V 238
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
++ + L +SGN L LP L+ L + N+ T LP SL L S +++L
Sbjct: 239 LPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293
Query: 192 NNLCGTIHSLENCTALMTLDVGENEL 217
N L + +L+ + + +
Sbjct: 294 NPL--SERTLQALREITSAPGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386
N +++ ++ + +P + + ++ + +N T +P L +++ S N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91
Query: 387 QLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAP 439
QL+ +P L L+ + +L +L GN L P
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL------WIFGNQLTSLP 137
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 78/409 (19%), Positives = 139/409 (33%), Gaps = 84/409 (20%)
Query: 27 SRFPSWLYSQKHLNYLDLSYSGIIGTIP------------NIFWSSASQIYVLDLSFNQI 74
+ P + K ++S P + Q + L+L+ +
Sbjct: 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83
Query: 75 HGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELN 134
+P L LE L NS + LP + L L NN++ L+
Sbjct: 84 S-SLPELP--PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL------------KALS 127
Query: 135 KW----QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190
+ L +S N L+ +LP+ N L I+D+ NN LP SL + +
Sbjct: 128 DLPPLLEYLGVSNNQLE-KLPELQ-NSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAG 181
Query: 191 KNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250
N L + L+N L + N L + + + ++ +N L EL
Sbjct: 182 NNQLE-ELPELQNLPFLTAIYADNNSL-----KKLPDLPLSLESIVAGNNILEEL--PEL 233
Query: 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN------SHAGKAIQYQFLLYASRAPL 304
+L FL + +N L +P +L A+ + +++ + + + L
Sbjct: 234 QNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292
Query: 305 IATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364
+ ++ S N + +L+ L N+SNN
Sbjct: 293 -------------------SELPPNLYYLNASSNEIR-SLCDLPPSLEEL---NVSNNKL 329
Query: 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
+P LE + S N L+ E+P+ +LK L++ N L
Sbjct: 330 I-ELPALPP---RLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 79/403 (19%), Positives = 142/403 (35%), Gaps = 84/403 (20%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P L +L L + P S K L + + + P + L +S
Sbjct: 90 PPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLE--------YLGVSN 140
Query: 72 NQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
NQ+ ++P L N++ L+++ + +NS L S L + NN + +
Sbjct: 141 NQLE-KLPELQNSSFLKIIDVDNNSLKKLPDLPPS-LEFIAAGNNQLE-ELPELQ----- 192
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
L +Y N L+ +LPD +L + NN LP L +L L +++
Sbjct: 193 NLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN 246
Query: 192 NNLCGTIHSL-ENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250
N L +L + +L L+V +N L T + E + L + N F + L +
Sbjct: 247 NLL----KTLPDLPPSLEALNVRDNYL-----TDLPELPQSLTFLDVSENIF-SGLSELP 296
Query: 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLE 310
+L +L + + N + + +L L S L L
Sbjct: 297 PNLYYL---NASSNEIR-SLCDLPPSLEE-----------------LNVSNNKL--IELP 333
Query: 311 DAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE 370
+ + S N+ + ++P NLK L ++ N P+
Sbjct: 334 A--------------LPPRLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPD 374
Query: 371 SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
++ L +N E+P+ +LK L++ N L
Sbjct: 375 IPESVEDLR-----MNSHLAEVPELPQNLK---QLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 72/402 (17%), Positives = 131/402 (32%), Gaps = 78/402 (19%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P L LG+ + L + P L + L +D+ + + + +
Sbjct: 130 PPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLKKLPDLP-----PSLEFIAAGN 182
Query: 72 NQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
NQ+ ++P L N L + +NS LP + L + NN + +
Sbjct: 183 NQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILE--ELPELQ---- 234
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
L +Y N L+ LPD +L L++ +N T +LP SL L
Sbjct: 235 NLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIF 289
Query: 192 NNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC 251
+ L +L L+ NE+ + + + L + +NK LP
Sbjct: 290 SGLSELPPNLY------YLNASSNEIRS-----LCDLPPSLEELNVSNNKL-IELPALPP 337
Query: 252 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311
L + + + N+L+ EVP NL+ L+ PL D
Sbjct: 338 RL---ERLIASFNHLA-EVPELPQNLKQ-----------------LHVEYNPL--REFPD 374
Query: 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371
+ D N+ ++P NLK L ++ N P+
Sbjct: 375 ----------------IPESVEDLRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDI 414
Query: 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
S+E + + ++ + + L +++
Sbjct: 415 PE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 64/363 (17%), Positives = 126/363 (34%), Gaps = 75/363 (20%)
Query: 67 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFI 126
++++ P + S + EL+ +N +S S+
Sbjct: 39 YYNAWSEWERNAPP-------GNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP--- 87
Query: 127 CYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 186
+ L S N L ELP+ + ++L++ + + + P L+
Sbjct: 88 ----ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEY 135
Query: 187 LHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246
L + N L + L+N + L +DV N L + +P + + +N+ L
Sbjct: 136 LGVSNNQLE-KLPELQNSSFLKIIDVDNNSL-KKLPDLP----PSLEFIAAGNNQLEEL- 188
Query: 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIA 306
EL +L FL + +N+L ++P +L + + A L
Sbjct: 189 -PELQNLPFLTAIYADNNSLK-KLPDLPLSLES-----------------IVAGNNIL-- 227
Query: 307 TLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366
L + + L + I N +P +L+ L N+ +N+ T
Sbjct: 228 EELPEL------------QNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT- 270
Query: 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFD 426
+PE ++ L+ + + LS P L +LN S+N + L+ +
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRSLCDLPPSLEELN 323
Query: 427 ASS 429
S+
Sbjct: 324 VSN 326
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 70/375 (18%), Positives = 108/375 (28%), Gaps = 112/375 (29%)
Query: 67 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFI 126
+ + N + + P + E+ S
Sbjct: 16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL---------- 65
Query: 127 CYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 186
R + L L+ L LP+ +L L S N T LP SL SL
Sbjct: 66 --RDCLDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLV 118
Query: 187 LHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246
+ L LE L V N+L E +P
Sbjct: 119 DNNNLKALSDLPPLLE------YLGVSNNQL-EKLP------------------------ 147
Query: 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIA 306
EL + +FL+I+D+ +N+L ++P +L
Sbjct: 148 --ELQNSSFLKIIDVDNNSLK-KLPDLPPSL----------------------------- 175
Query: 307 TLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366
I N ++P E+ NL L ++ NN
Sbjct: 176 ------------------------EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK- 208
Query: 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFD 426
++P+ SLESI N L E+P + +L FL + NN L L++ +
Sbjct: 209 KLPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALN 263
Query: 427 ASSFSGNDLCRAPLS 441
DL P S
Sbjct: 264 VRDNYLTDLPELPQS 278
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 48/295 (16%), Positives = 88/295 (29%), Gaps = 64/295 (21%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
Q + L E+P N ++ + +++ N P G + LR
Sbjct: 14 QEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC---- 68
Query: 197 TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFL 256
L++ L ++P + L+ N LP+ L L
Sbjct: 69 ------LDRQAHELELNNLGL-SSLPELP----PHLESLVASCNSL-TELPELPQSLKSL 116
Query: 257 QIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVM 316
+ + L L L S + L E
Sbjct: 117 LVDNNNLKAL----SDLPPLLE-----------------YLGVSNN-QLEKLPELQN--- 151
Query: 317 KGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR 376
+ ++IID N+ K+P +L+ + NN +PE + +
Sbjct: 152 ----------SSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE-ELPE-LQNLP 195
Query: 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG--KIPSSTQLQSFDASS 429
L +I N L ++P SL+ + NN L ++ + L + A +
Sbjct: 196 FLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILEELPELQNLPFLTTIYADN 246
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 60/272 (22%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELV 218
L ++ T +P+ ++ S + + G E
Sbjct: 12 FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPP------------GNGEQR 58
Query: 219 ENIPTWIRE-RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNL 277
E + +R+ + L L + +L P+ L L + N+L+ E+P +L
Sbjct: 59 EMAVSRLRDCLDRQAHELELNNLGLSSL-PELPPHLESL---VASCNSLT-ELPELPQSL 113
Query: 278 RAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSK 337
K++ + + L L L + S
Sbjct: 114 -----------KSLLVDNNNLKALSDLPPLL----------------EYLGV------SN 140
Query: 338 NNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMS 397
N K+P E+ N L+ +++ NN ++P+ SLE I NQL E+P +
Sbjct: 141 NQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQ 192
Query: 398 SLKFLNHLNLSNNNLTGKIPSSTQLQSFDASS 429
+L FL + NN+L L+S A +
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 24/126 (19%)
Query: 333 IDFSKNNFSGKIPLEVTNLKV-------------LQSVNLSNNFFTGRIPESVGTMRSLE 379
+ + + P + + L+N + +PE LE
Sbjct: 39 YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLE 94
Query: 380 SIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAP 439
S+ S N L+ E+P+ SLK L N + L+ P L S N L + P
Sbjct: 95 SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYL------GVSNNQLEKLP 147
Query: 440 LSGNCS 445
N S
Sbjct: 148 ELQNSS 153
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 1e-16
Identities = 63/335 (18%), Positives = 123/335 (36%), Gaps = 90/335 (26%)
Query: 98 SIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSG---NFLQGELPDCW 154
SI LP+ +++ + + N+ISG+ + + +KW+ L G N L +C
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYF----SAWDKWEKQALPGENRNEAVSLLKECL 57
Query: 155 MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL-ENCTALMTLDVG 213
+N L L+ + +LP +L + L + +N L SL E +L LD
Sbjct: 58 IN--QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL----ISLPELPASLEYLDAC 108
Query: 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
+N L + + E + + L + +N+ +LP+ L ++ + +N L+ +P
Sbjct: 109 DNRL-----STLPELPASLKHLDVDNNQL-TMLPELPALLEYI---NADNNQLT-MLPEL 158
Query: 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRII 333
+L L++
Sbjct: 159 PTSL-----------------------------------------------EVLSV---- 167
Query: 334 DFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSL----NQLS 389
+NN +P +L+ L ++S N +P E + N+++
Sbjct: 168 ---RNNQLTFLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT 220
Query: 390 GEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS 424
IP+++ SL + L +N L+ +I S Q+
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 52/261 (19%), Positives = 94/261 (36%), Gaps = 30/261 (11%)
Query: 29 FPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 88
+ S + + + + + + S L L+ + +P+ Q+
Sbjct: 29 YFSAWDKWEKQALPGENRNEAVSLLKECLINQFS---ELQLNRLNLS-SLPD-NLPPQIT 83
Query: 89 VLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG 148
VL + N+ +LP + + L LD +N +S ++ + L + N L
Sbjct: 84 VLEITQNALI-SLPELPASLEYLDACDNRLS-TL-------PELPASLKHLDVDNNQLT- 133
Query: 149 ELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALM 208
LP+ L ++ NN+ T LP SL + L +R N L E+ L
Sbjct: 134 MLPELP---ALLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLTFLPELPES---LE 183
Query: 209 TLDVGENELVENIPTWIRERFS---RIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNN 265
LDV N L E++P + R N+ ++ P+ + L + L DN
Sbjct: 184 ALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNP 241
Query: 266 LSGEVPRCIHNLRAMVTMNSH 286
LS + + A +
Sbjct: 242 LSSRIRESLSQQTAQPDYHGP 262
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 9e-11
Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 16/221 (7%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P L L L S P L +LD+ + + +P + + + ++
Sbjct: 99 PASLEYLDACDNRL-STLPELP---ASLKHLDVDNNQLT-MLPELP----ALLEYINADN 149
Query: 72 NQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
NQ+ +P L LEVLS+ +N + L S L LD S N + S+ +
Sbjct: 150 NQLT-MLPELPT--SLEVLSVRNNQLTFLPELPES-LEALDVSTNLLE-SLPAVPVRNHH 204
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
N + +P+ ++ + L +N + + S + Q +
Sbjct: 205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGP 262
Query: 192 NNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRI 232
+N D EN + + + +
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAF 303
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 346 LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLN-- 403
L+ + + L+ + +P+++ + ++ + N L +P+ +SL++L+
Sbjct: 53 LKECLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLDAC 108
Query: 404 ---------------HLNLSNNNLTGKIPSS-TQLQSFDASS 429
HL++ NN LT +P L+ +A +
Sbjct: 109 DNRLSTLPELPASLKHLDVDNNQLT-MLPELPALLEYINADN 149
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 73/391 (18%), Positives = 124/391 (31%), Gaps = 59/391 (15%)
Query: 52 TIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-- 105
+P + + +DLS N I L + L+ L + + + + +
Sbjct: 24 QVPELPAH----VNYVDLSLNSIAELNETSFSRLQD---LQFLKVEQQTPGLVIRNNTFR 76
Query: 106 --SYLIELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQGEL--PDCWMNYQ 158
S LI L N + F N L ++L L+ L G + + +
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAF-------NGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129
Query: 159 NLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNL----CGTIHSLENCTALMTLDVG 213
+L +L L +N P S ++ L L N + + + + L +
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLS 188
Query: 214 ENELVENIPTWIRE-------RFSRIVVLILRSNKFYNLLPKELCD-LAFLQIVDLADNN 265
L + W+ + + I L L N F + K D +A +I L +N
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 266 LSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325
H + G S++ I LL+ F
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF-----------S 296
Query: 326 TLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDF 383
+ + ++N + KI L L +NLS NF I + + LE +D
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDL 354
Query: 384 SLNQLSGEIPQSM-SSLKFLNHLNLSNNNLT 413
S N + + L L L L N L
Sbjct: 355 SYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 50/287 (17%), Positives = 95/287 (33%), Gaps = 38/287 (13%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72
L L + G + + L L L Y+ + ++ + + VL L+
Sbjct: 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQC 113
Query: 73 QIHGQI------PNLTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNN---SIS 119
+ G + LT+ LE+L L N+ P LD + N SI
Sbjct: 114 NLDGAVLSGNFFKPLTS---LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 120 GSIFHF---ICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP- 175
+ L+ + ++ +L E ++ LDLS N F ++
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230
Query: 176 --ISLGSLISLQSLHLRKNNL------CGTIHSLENCT-------ALMTLDVGENELVEN 220
+ +QSL L + +N T + T D+ ++++
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA- 289
Query: 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
+ + F+ + L L N+ + L L ++L+ N L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 27/284 (9%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGENE 216
++ +DLS N S L LQ L + + I + ++L+ L + N+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 217 LVENIPTWIRERFSRIVVLILRSNKF--YNLLPKELCDLAFLQIVDLADNNLSGEVPRCI 274
+ T + + VL L L L L+++ L DNN+ P
Sbjct: 91 F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 275 -HNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRII 333
N+R ++ L ++ + ++ E+ + +G+ R L+ + +
Sbjct: 150 FLNMRRFHVLD------------LTFNK---VKSICEEDLLNFQGKHFTLLR-LSSITLQ 193
Query: 334 DFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESI-----DFSLNQL 388
D ++ + + +++LS N F + + + I S N
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 389 SGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432
S + L + + S +++ + S FS
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 60/238 (25%), Positives = 90/238 (37%), Gaps = 11/238 (4%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGI-IGTIPNIFWSSASQIYVLDLS 70
P L L L S L L LS +G+ + + + LDLS
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 71 FNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNNSISGSIFHFI 126
FN + N QLE L ++ LI LD S+ F+ I
Sbjct: 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145
Query: 127 CYRANELNKWQILYLSGN-FLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185
+ L ++L ++GN F + LPD + +NL LDLS + P + SL SLQ
Sbjct: 146 FNGLSSL---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 186 SLHLRKNNLCG-TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242
L++ NN + +L LD N ++ + ++ S + L L N F
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 27/205 (13%)
Query: 66 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHF 125
L+L N++ SL F L L +L S+N +S F
Sbjct: 32 RLELESNKLQ---------------SLPHGVFD-KLT----QLTKLSLSSNGLS---FKG 68
Query: 126 ICYRANE-LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISL-GSLIS 183
C +++ + L LS N + + ++ + L LD ++ S+ SL +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 184 LQSLHLRKNNLCG-TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242
L L + + ++L L + N EN I + L L +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 243 YNLLPKELCDLAFLQIVDLADNNLS 267
L P L+ LQ+++++ NN
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFF 212
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 50/281 (17%), Positives = 85/281 (30%), Gaps = 56/281 (19%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT--GNLPISLGSLISLQSLHLRKNNL 194
L L N LQ + L L LS+N + G S SL+ L L N +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 195 CGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLA 254
+ L LD + L + + ++ L + L+
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 255 FLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFV 314
L+++ +A N+ L D F
Sbjct: 151 SLEVLKMAGNS--------------------------------------FQENFLPDIF- 171
Query: 315 VMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESVG 373
L + +D S+ ++ +L LQ +N+S+N F
Sbjct: 172 ----------TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
Query: 374 TMRSLESIDFSLNQLSGEIPQSM--SSLKFLNHLNLSNNNL 412
+ SL+ +D+SLN + + L LNL+ N+
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 40/230 (17%)
Query: 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS--GEVPRCIHN 276
IP+ L L SNK +L L L + L+ N LS G +
Sbjct: 24 TGIPSSAT-------RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 277 LRAMVT--MNSHAGKAIQYQFL-------LYASRAPLIATLLEDAFVVMKGREAKYERTL 327
++ ++ + + FL L + L F +L
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-----------LSL 125
Query: 328 NLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSL 385
+ +D S + + L L+ + ++ N F + +R+L +D S
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 386 NQLSGEIPQSM-SSLKFLNHLNLSNNNLTGKIPSS-----TQLQSFDASS 429
QL ++ + +SL L LN+S+NN + + LQ D S
Sbjct: 185 CQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSL 232
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 1e-14
Identities = 50/281 (17%), Positives = 104/281 (37%), Gaps = 25/281 (8%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
+ L LS N + NL L L++N S SL SL+ L L N L
Sbjct: 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-S 113
Query: 197 TIHS--LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN-KFYNLLPKELCDL 253
+ S + ++L L++ N T + +++ +L + + F + K+ L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
FL+ +++ ++L P+ + +++ + + L+ + LLE
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLI------------LHMKQ---HILLLEIFV 218
Query: 314 VVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373
+ L + F + S + ++V +++ ++ + +
Sbjct: 219 ---DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274
Query: 374 TMRSLESIDFSLNQLSGEIPQSM-SSLKFLNHLNLSNNNLT 413
+ L ++FS NQL +P + L L + L N
Sbjct: 275 QISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 30/274 (10%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
+ +L L + + S L +L L L+ +GI TI +SS + LDLS+
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSY 109
Query: 72 NQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNN----SISGS 121
N + + + + L L+L N + + L L N I
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
F L + L + + LQ P + QN+ L L + L I +
Sbjct: 169 DFAG-------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221
Query: 182 ISLQSLHLRKNNLC---------GTIHSLENCTALMTLDVGENELVENIPTWIRERFSRI 232
S++ L LR +L G +SL + + + L + + + S +
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGL 279
Query: 233 VVLILRSNKFYNLLPKELCDLAFLQIVDLADNNL 266
+ L N+ ++ L LQ + L N
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 47/281 (16%), Positives = 95/281 (33%), Gaps = 48/281 (17%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGENE 216
+ LDLSNN+ T L ++LQ+L L N + TI + +L LD+ N
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNY 111
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL-CDLAFLQIVDLADNNLSGEVP-RCI 274
L N+ + + S + L L N + L L L LQI+ + + + ++ +
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 275 HNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIID 334
L + + + AS + + + +++ V +
Sbjct: 171 AGLTFLEELE------------IDASD---LQSYEPKSL-----------KSIQNVSHLI 204
Query: 335 FSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ 394
+ + V ++ + L + F ++LS
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETN 248
Query: 395 SMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435
S+ ++ +++ +L + Q+ FS N L
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 66/434 (15%), Positives = 133/434 (30%), Gaps = 69/434 (15%)
Query: 3 LKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSAS 62
+ ++W P A+ + + L LD S I + I +
Sbjct: 8 TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI--EKLT 64
Query: 63 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGS 121
+ L + N I +L+ L L+ SN + L + + L L+ N ++
Sbjct: 65 GLTKLICTSNNI--TTLDLSQNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLTKL 121
Query: 122 IFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSL 181
++ L + N L E+ + L LD NK L ++
Sbjct: 122 DV-------SQNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLDVT--PQ 169
Query: 182 ISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNK 241
L +L N + T + L L+ N + + + ++ L SNK
Sbjct: 170 TQLTTLDCSFNKI--TELDVSQNKLLNRLNCDTNNI-TKLDL---NQNIQLTFLDCSSNK 223
Query: 242 FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASR 301
+ ++ L L D + N L+ + L L+ +
Sbjct: 224 LTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTT-----------------LHCIQ 263
Query: 302 APLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSN 361
L+ L + ++I F L+VT+ L ++
Sbjct: 264 TDLLEIDL-----------------THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306
Query: 362 NFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQ 421
T + L + + +L+ E+ +S L L+ N ++ S +
Sbjct: 307 AGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGK 359
Query: 422 LQSFDASSFSGNDL 435
+ + + + +
Sbjct: 360 IPALNNNFEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 55/389 (14%), Positives = 119/389 (30%), Gaps = 66/389 (16%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
L L + + I + S + + L N++ ++T +L L+ +N
Sbjct: 64 TGLTKLICTSNNIT----TLDLSQNTNLTYLACDSNKLTN--LDVTPLTKLTYLNCDTNK 117
Query: 97 FSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMN 156
+ + L L+ + N+++ + + L N +L
Sbjct: 118 LTKLDVSQNPLLTYLNCARNTLTEIDV-------SHNTQLTELDCHLNKKITKLDVT--P 168
Query: 157 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENE 216
L LD S NK T + + L L+ NN+ T L L LD N+
Sbjct: 169 QTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI--TKLDLNQNIQLTFLDCSSNK 223
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276
L I +++ N L ++ L+ L + +L E+ + +
Sbjct: 224 L-TEIDV---TPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EID--LTH 273
Query: 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336
++ + + I+ + + + ++D
Sbjct: 274 NTQLIYFQAEGCRKIKELDVTH----------------------------NTQLYLLDCQ 305
Query: 337 KNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396
+ L+++ L + L+N T + V L+S+ + + S+
Sbjct: 306 AAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SV 357
Query: 397 SSLKFLNHLNLSNNNLTGKIPSSTQLQSF 425
+ LN+ + + S
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSL 386
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 57/381 (14%), Positives = 116/381 (30%), Gaps = 68/381 (17%)
Query: 66 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSY--LIELDFSNNSISGSIF 123
+ +F + A L L ++S + + I L +L ++N+I+
Sbjct: 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNITTLDL 81
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 183
++ L N L L L L+ NK T + +
Sbjct: 82 -------SQNTNLTYLACDSNKLT-NLDVT--PLTKLTYLNCDTNKLT---KLDVSQNPL 128
Query: 184 LQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
L L+ +N L T + + T L LD N+ + + +++ L NK
Sbjct: 129 LTYLNCARNTL--TEIDVSHNTQLTELDCHLNKKITKLDV---TPQTQLTTLDCSFNKIT 183
Query: 244 NLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP 303
L ++ L ++ NN++ ++ ++ + L S
Sbjct: 184 EL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF--------------LDCSSNK 223
Query: 304 LIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNF 363
L + L + D S N + L+V+ L L +++
Sbjct: 224 LTEIDVTP---------------LTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD 265
Query: 364 FTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG-KIPSSTQL 422
I + L + E+ ++ L L+ +T + + +L
Sbjct: 266 LL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKL 320
Query: 423 QSFDASSFSGNDLCRAPLSGN 443
+ +L +S N
Sbjct: 321 VYLY---LNNTELTELDVSHN 338
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 41/255 (16%), Positives = 77/255 (30%), Gaps = 30/255 (11%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
QL L ++ + Q L LD S++ I + S + L+ N
Sbjct: 149 QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT----ELDVSQNKLLNRLNCDTNN 202
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANE 132
I +L QL L SN + + + + L D S N ++ +
Sbjct: 203 I--TKLDLNQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLT-------ELDVST 252
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
L+K L+ L E+ L+ + L ++ L L +
Sbjct: 253 LSKLTTLHCIQTDLL-EIDLTHNT--QLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAA 307
Query: 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252
+ T L L+ L + EL + +++ L + + +
Sbjct: 308 GI--TELDLSQNPKLVYLYLNNTEL-TELDV---SHNTKLKSLSCVNAHIQDF--SSVGK 359
Query: 253 LAFLQIVDLADNNLS 267
+ L A+
Sbjct: 360 IPALNNNFEAEGQTI 374
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 59/239 (24%), Positives = 89/239 (37%), Gaps = 23/239 (9%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGS 94
LDL + I + F +Y L L N+I +I + +L+ L +
Sbjct: 54 PDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111
Query: 95 NSFSIALPLISSYLIELDFSNNSIS---GSIFHFICYRANELNKWQILYLSGNFLQ-GEL 150
N P + S L+EL +N I +F L + + GN L+
Sbjct: 112 NHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS-------GLRNMNCIEMGGNPLENSGF 164
Query: 151 PDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALM 208
+ L L +S K TG I +L LHL N + I L + L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTG---IPKDLPETLNELHLDHNKI-QAIELEDLLRYSKLY 220
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
L +G N++ I + L L +NK +P L DL LQ+V L NN++
Sbjct: 221 RLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 54/286 (18%), Positives = 91/286 (31%), Gaps = 61/286 (21%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
+L L N + D + Q+L L L NNK + + L LQ L++ KN+L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-- 114
Query: 197 TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFL 256
IP S +V L + N+ + L +
Sbjct: 115 ----------------------VEIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149
Query: 257 QIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVM 316
+++ N L + + G + Y + A + + +D
Sbjct: 150 NCIEMGGNPLE----------NSGFEPGAFDGLKLNYLRISEAK----LTGIPKDLP--- 192
Query: 317 KGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV-GT 374
TL + N I LE L + L +N I
Sbjct: 193 --------ETL---NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSF 239
Query: 375 MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
+ +L + N+LS +P + LK L + L NN+T K+ +
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 18/216 (8%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQI-HGQIPNLT-NAAQLEVLSLGS 94
L L + + I +P +S + +++ N + + + +L L +
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 95 NSFSIALPLISSYLIELDFSNNSISG-SIFHFICYRANELNKWQILYLSGNFLQGELPDC 153
+ + L EL +N I + +K L L N ++
Sbjct: 182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIENGS 236
Query: 154 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL-------CGTIHSLENCTA 206
L L L NNK + +P L L LQ ++L NN+ +
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295
Query: 207 LMTLDVGENEL-VENIPTWIRERFSRIVVLILRSNK 241
+ + N + + + + + + K
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 8e-11
Identities = 71/390 (18%), Positives = 119/390 (30%), Gaps = 110/390 (28%)
Query: 38 HLNYLDLSYSGIIGTIP-NIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
HL + S G+ +P I +LDL N I L +
Sbjct: 34 HLRVVQCSDLGLK-AVPKEISPD----TTLLDLQNNDIS---------------ELRKDD 73
Query: 97 FSIALPLISSYLIELDFSNNSISGSIFHFICYRA-NELNKWQILYLSGNFL---QGELPD 152
F L +L L NN IS I +A + L K Q LY+S N L LP
Sbjct: 74 FK-GLQ----HLYALVLVNNKIS-----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP- 122
Query: 153 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI---HSLENCTALMT 209
+L+ L + +N+ L ++ + + N L + + + L
Sbjct: 123 -----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNY 176
Query: 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE 269
L + E +L IP ++ + L L NK + ++L + L + L N +
Sbjct: 177 LRISEAKLTG-IP---KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 270 VPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNL 329
+ L + R L+L
Sbjct: 233 ENGSLSFLPTL--------------------------------------------RELHL 248
Query: 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV-------GTMRSLESID 382
N S ++P + +LK+LQ V L N T ++ + I
Sbjct: 249 ------DNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGIS 300
Query: 383 FSLNQLS-GEIPQSM-SSLKFLNHLNLSNN 410
N + E+ + + + N
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 51/263 (19%), Positives = 84/263 (31%), Gaps = 62/263 (23%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGENE 216
+ +LDL NN + L L +L L N + IH L L + +N
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276
LVE IP S +V L + N+ + L + +++ N L
Sbjct: 114 LVE-IPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-------- 161
Query: 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336
+ AF L L + S
Sbjct: 162 -----------------------------SGFEPGAF-----------DGLKL-NYLRIS 180
Query: 337 KNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQS 395
+ + IP ++ + L ++L +N I L + NQ+ S
Sbjct: 181 EAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236
Query: 396 MSSLKFLNHLNLSNNNLTGKIPS 418
+S L L L+L NN L+ ++P+
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPA 258
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 4e-14
Identities = 40/249 (16%), Positives = 73/249 (29%), Gaps = 20/249 (8%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQLEVLSL 92
+ L YL + + L + +I + + L+ L+L
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 93 GSNSFSIALP-----LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ 147
+ + P L L+ N S + + ++L ++
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 148 GELPDCWMNYQNLMILDLSNNKFTGNLPIS----LGSLISLQSLHLRKNNLC----GTIH 199
+ + L LDLS+N G + +LQ L LR +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222
Query: 200 SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIV 259
L LD+ N L + + S++ L L + A L ++
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVL 279
Query: 260 DLADNNLSG 268
DL+ N L
Sbjct: 280 DLSYNRLDR 288
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-10
Identities = 63/364 (17%), Positives = 101/364 (27%), Gaps = 76/364 (20%)
Query: 54 PNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDF 113
P WSSA L + +++G +L + F+ + +S L L
Sbjct: 20 PKPDWSSAFN--CLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS--LKRLTV 75
Query: 114 SNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN 173
I I L + + L L L N + TG
Sbjct: 76 RAARIPSRILF------------GALRV-------------LGISGLQELTLENLEVTGT 110
Query: 174 LPISLGSLI--SLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSR 231
P L L L+LR + L +
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG-------------------- 150
Query: 232 IVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291
+ VL + N +++ L +DL+DN GE + + +
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------LISALCPLKFPTL 203
Query: 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TN 350
Q L A A ++ +D S N+
Sbjct: 204 QVLALRNAGMETPSGVCSALA------------AARVQLQGLDLSHNSLRDAAGAPSCDW 251
Query: 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410
L S+NLS ++P+ G L +D S N+L P S L + +L+L N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGN 306
Query: 411 NLTG 414
Sbjct: 307 PFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 5e-10
Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 34/203 (16%)
Query: 1 MTLKVNDNWIPPFQ------LATLGLRHCHLGSRFPSWLYSQKHLNYLDLSY---SGIIG 51
++ D W+ Q L L + H + + L+ LDLS G G
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
Query: 52 TIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIEL 111
I + + VL L +E S ++ + A L L
Sbjct: 191 LISALCPLKFPTLQVLALRNA-------------GMETPSGVCSALAAARVQ----LQGL 233
Query: 112 DFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171
D S+NS+ + C ++L L LS L+ ++P L +LDLS N+
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQL---NSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD 287
Query: 172 GNLPISLGSLISLQSLHLRKNNL 194
P L + +L L+ N
Sbjct: 288 R-NPSPDE-LPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 6e-07
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 14 QLATLGLRHCHLGS---RFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLS 70
L L LR+ + + + ++ L LDLS++ + SQ+ L+LS
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261
Query: 71 FNQIHGQIPNLTNAAQLEVLSLGSNSF-SIALPLISSYLIELDFSNNSISGS 121
F + L A+L VL L N P + L N S
Sbjct: 262 FTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 8e-06
Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES----VGTMRSLESIDFS- 384
++++ ++ + +V L +++LS+N G +L+ +
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210
Query: 385 --LNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQL 422
+ SG ++ L L+LS+N+L + +
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 9/124 (7%)
Query: 27 SRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP--NLTNA 84
+ P + + L + G + + Q+ LDLS N + +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 85 AQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGN 144
+QL L+L + + L LD S N + + +EL + L L GN
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSP------DELPQVGNLSLKGN 306
Query: 145 FLQG 148
Sbjct: 307 PFLD 310
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 8e-14
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 16/190 (8%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
++ + + S I ++ I + L L+ N++ I LTN L L L N
Sbjct: 43 NSIDQIIANNSDIK-SVQGI--QYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENK 98
Query: 97 FSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
L L L +N IS I L + + LYL N +
Sbjct: 99 IKDLSSLKDLKKLKSLSLEHNGIS-DINGL-----VHLPQLESLYLGNNKITD--ITVLS 150
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
L L L +N+ + ++ L L LQ+L+L KN++ + +L L L++
Sbjct: 151 RLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQ 207
Query: 216 ELVENIPTWI 225
E +
Sbjct: 208 ECLNKPINHQ 217
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 3e-10
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 20/205 (9%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+ L L L P L + K+L +L L + I + ++ ++ L L N
Sbjct: 66 NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSL--KDLKKLKSLSLEHNG 120
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANE 132
I I L + QLE L LG+N + L + L L +N IS I
Sbjct: 121 IS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPL-----AG 173
Query: 133 LNKWQILYLSGNFLQ--GELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190
L K Q LYLS N + L +NL +L+L + + +L+ ++
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGL----KNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229
Query: 191 KNNLCGTIHSLENCTALMTLDVGEN 215
+L T + + +V +
Sbjct: 230 DGSLV-TPEIISDDGDYEKPNVKWH 253
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 1e-09
Identities = 47/302 (15%), Positives = 101/302 (33%), Gaps = 50/302 (16%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
+ + +L T ++ L S+ + +++ ++ ++ + L + N
Sbjct: 19 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN 75
Query: 216 EL--VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
+L ++ + + L L NK +L L DL L+ + L N +S
Sbjct: 76 KLTDIKPL-----TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-----D 123
Query: 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPL--IATLLEDAFVVMKGREAKYERTLNLVR 331
I+ L + + S LY + I L L +
Sbjct: 124 INGLVHLPQLES-----------LYLGNNKITDITVL----------------SRLTKLD 156
Query: 332 IIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391
+ N S +PL L LQ++ LS N + ++ +++L+ ++ + +
Sbjct: 157 TLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNK 212
Query: 392 IPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCSEHVSIP 451
S+L N + ++ +L S + +S + V+I
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272
Query: 452 KD 453
K
Sbjct: 273 KA 274
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 8e-09
Identities = 51/323 (15%), Positives = 102/323 (31%), Gaps = 87/323 (26%)
Query: 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ--GELPDCWMNYQNLMILDL 165
I+ + S++ ++ NELN + + + ++ + N+ L L
Sbjct: 23 TIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSVQGIQ----YLPNVTKLFL 72
Query: 166 SNNKFTGNLPIS-LGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL--VENIP 222
+ NK T I L +L +L L L +N + + SL++ L +L + N + + +
Sbjct: 73 NGNKLTD---IKPLTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGISDINGL- 127
Query: 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 282
++ L L +NK ++ L L L + L DN I ++ +
Sbjct: 128 ----VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ--------ISDIVPLAG 173
Query: 283 MNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342
+ ++ + SKN+ S
Sbjct: 174 LTK--------------------------------------------LQNLYLSKNHISD 189
Query: 343 KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFL 402
L LK L + L + + + ++ + L S
Sbjct: 190 LRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS------- 240
Query: 403 NHLNLSNNNLTGKIPSSTQLQSF 425
+ + N+ +P T SF
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSF 263
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
K L L L ++GI I + Q+ L L N+I I L+ +L+ LSL N
Sbjct: 109 KKLKSLSLEHNGIS-DINGL--VHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQ 164
Query: 97 FSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
S +PL + L L S N IS + L +L L + +
Sbjct: 165 ISDIVPLAGLTKLQNLYLSKNHIS-DLRAL-----AGLKNLDVLELFSQECLNKPINHQS 218
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLEN 203
N + ++ IS ++ + +
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 9e-06
Identities = 36/245 (14%), Positives = 86/245 (35%), Gaps = 50/245 (20%)
Query: 178 LGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL--VENIPTWIRERFSRIVVL 235
+ +L+K ++ + ++ + +++ V+ I + + L
Sbjct: 17 DDAFAETIKDNLKKKSV-TDAVTQNELNSIDQIIANNSDIKSVQGI-----QYLPNVTKL 70
Query: 236 ILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQF 295
L NK ++ P L +L L + L +N + + +L+ + + S
Sbjct: 71 FLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-----DLSSLKDLKKLKS---------- 113
Query: 296 LLYASRAPL--IATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKV 353
L + I L L + + N + L L
Sbjct: 114 -LSLEHNGISDINGL----------------VHLPQLESLYLGNNKITDITVLS--RLTK 154
Query: 354 LQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
L +++L +N + + + L+++ S N +S ++ ++++ LK L+ L L +
Sbjct: 155 LDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECL 210
Query: 414 GKIPS 418
K +
Sbjct: 211 NKPIN 215
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 33/232 (14%), Positives = 81/232 (34%), Gaps = 46/232 (19%)
Query: 184 LQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
+ + I + + ++ + + + + + I +I ++
Sbjct: 1 MGETITVSTPI-KQIFPDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK 56
Query: 244 NLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP 303
++ + + L + + L N L+ I L + + L+
Sbjct: 57 SV--QGIQYLPNVTKLFLNGNKLT-----DIKPLTNLKNLGW-----------LFLDENK 98
Query: 304 L--IATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSN 361
+ +++L + L ++ + N S L +L L+S+ L N
Sbjct: 99 IKDLSSL----------------KDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGN 140
Query: 362 NFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
N T + + L+++ NQ+S +I ++ L L +L LS N+++
Sbjct: 141 NKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 188
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 21/257 (8%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
+ + S + T+ + I L + I + L L L N
Sbjct: 19 ANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74
Query: 97 FSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
+ PL + + + EL+ S N + ++ L + L L+ + P
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLK-NVSAI-----AGLQSIKTLDLTSTQITDVTPLA-- 126
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
NL +L L N+ T N+ L L +LQ L + + + L N + L TL +N
Sbjct: 127 GLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDN 183
Query: 216 ELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIH 275
++ +I ++ + L++N+ ++ P L + + L IV L + ++ + +
Sbjct: 184 KI-SDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238
Query: 276 NLRAMVTMNSHAGKAIQ 292
NL + +G I
Sbjct: 239 NLVVPNVVKGPSGAPIA 255
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 54/319 (16%), Positives = 110/319 (34%), Gaps = 55/319 (17%)
Query: 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSN 167
I++ ++++ ++ +L+ L G + + NL+ L+L +
Sbjct: 21 AIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 168 NKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRE 227
N+ T +L L +L + L L N L + ++ ++ TLD+ ++ + P
Sbjct: 73 NQIT-DLA-PLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTP---LA 126
Query: 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHA 287
S + VL L N+ N+ P L L LQ + + + +S + L + + +
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-----LTPLANLSKLTT-- 177
Query: 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLE 347
L A + + +L + + N S PL
Sbjct: 178 ---------LKADDNKI--------------SDISPLASLPNLIEVHLKNNQISDVSPLA 214
Query: 348 VTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407
N L V L+N T + + N + G ++ ++
Sbjct: 215 --NTSNLFIVTLTNQTITNQPVFYNNNLV-------VPNVVKGPSGAPIAPATISDNGTY 265
Query: 408 SNNNLTGKIPSSTQLQSFD 426
++ NLT + S S+
Sbjct: 266 ASPNLTWNLTSFINNVSYT 284
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 42/182 (23%), Positives = 67/182 (36%), Gaps = 15/182 (8%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
++ L L L + + + + LDL+ + I + + + S + VL L NQ
Sbjct: 86 KITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT-DVTPL--AGLSNLQVLYLDLNQ 140
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANE 132
I I L L+ LS+G+ S PL + S L L +N IS I
Sbjct: 141 IT-NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-DISPL-----AS 193
Query: 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
L ++L N + P N NL I+ L+N T +L+ +
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
Query: 193 NL 194
Sbjct: 252 AP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 39/262 (14%), Positives = 91/262 (34%), Gaps = 52/262 (19%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
N + + + T ++ L + +L + TI ++ L+ L++ +N
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDN 73
Query: 216 EL--VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
++ + + + ++I L L N N+ + L ++ +DL ++
Sbjct: 74 QITDLAPL-----KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD----- 121
Query: 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPL--IATLLEDAFVVMKGREAKYERTLNLVR 331
+ L + + LY + I+ L L ++
Sbjct: 122 VTPLAGLSNLQV-----------LYLDLNQITNISPL----------------AGLTNLQ 154
Query: 332 IIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391
+ S PL NL L ++ +N + + ++ +L + NQ+S
Sbjct: 155 YLSIGNAQVSDLTPLA--NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV 210
Query: 392 IPQSMSSLKFLNHLNLSNNNLT 413
P +++ L + L+N +T
Sbjct: 211 SP--LANTSNLFIVTLTNQTIT 230
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 13/159 (8%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
+L L L + I I + + + + L + Q+ + L N ++L L N
Sbjct: 129 SNLQVLYLDLNQIT-NISPL--AGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNK 184
Query: 97 FSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
S PL S LIE+ NN IS + + I+ L+ + +
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQIS-DVSPL-----ANTSNLFIVTLTNQTIT--NQPVFY 236
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 194
N ++ + P ++ + S +L N
Sbjct: 237 NNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-13
Identities = 73/386 (18%), Positives = 116/386 (30%), Gaps = 101/386 (26%)
Query: 38 HLNYLDLSYSGIIGTIP-NIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
HL + S G+ +P ++ +LDL N+I +
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLPPD----TALLDLQNNKIT---------------EIKDGD 71
Query: 97 FSIALPLISSYLIELDFSNNSISGSIFHFICYRA-NELNKWQILYLSGNFLQGELPDCWM 155
F L L L NN IS I A L K + LYLS N L+ ELP+
Sbjct: 72 FK-NLK----NLHTLILINNKIS-----KISPGAFAPLVKLERLYLSKNQLK-ELPE--K 118
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI---HSLENCTALMTLDV 212
+ L L + N+ T L + + L N L + + + L + +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 213 GENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPR 272
+ + IP + + L L NK + L L L + L+ N++S
Sbjct: 179 ADTNI-TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 273 CIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRI 332
+ N + R L+L
Sbjct: 235 SLANTPHL--------------------------------------------RELHL--- 247
Query: 333 IDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG------RIPESVGTMRSLESIDFSLN 386
+ N K+P + + K +Q V L NN + P S + N
Sbjct: 248 ---NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303
Query: 387 QLS-GEIPQSM-SSLKFLNHLNLSNN 410
+ EI S + + L N
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-13
Identities = 51/300 (17%), Positives = 102/300 (34%), Gaps = 44/300 (14%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMTLDVGENE 216
+ +LDL NNK T +L +L +L L N + I + L L + +N+
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQ 111
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV--PRCI 274
L E +P + + L + N+ + L + +V+L N L
Sbjct: 112 LKE-LPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 275 HNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIID 334
++ + + + + I T+ + +L +
Sbjct: 168 QGMKKLSYIR------------IADTN---ITTIPQGLPP-------------SL-TELH 198
Query: 335 FSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIP 393
N + K+ L L + LS N + S+ L + + N+L ++P
Sbjct: 199 LDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256
Query: 394 QSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCSEHVSIPKD 453
++ K++ + L NNN++ I S+ + + L N ++ I
Sbjct: 257 GGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKAS--YSGVSLFSNPVQYWEIQPS 313
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 38/260 (14%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P A L L++ + + K+L+ L L + I P F + ++ L LS
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSK 109
Query: 72 NQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
NQ+ ++P L+ L + N + + S+F N
Sbjct: 110 NQLK-ELPEKM-PKTLQELRVHENEIT------------------KVRKSVF-------N 142
Query: 132 ELNKWQILYLSGNFLQGEL--PDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL 189
LN+ ++ L N L+ + + L + +++ T I G SL LHL
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHL 199
Query: 190 RKNNLCGTIH--SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP 247
N + + SL+ L L + N + + + L L +NK +P
Sbjct: 200 DGNKI-TKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVK-VP 256
Query: 248 KELCDLAFLQIVDLADNNLS 267
L D ++Q+V L +NN+S
Sbjct: 257 GGLADHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 56/299 (18%), Positives = 111/299 (37%), Gaps = 54/299 (18%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
+L L N + + N +NL L L NNK + P + L+ L+ L+L KN L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-- 112
Query: 197 TIHSLENCT--ALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL--PKELCD 252
L L L V ENE+ + + + ++++V+ L +N +
Sbjct: 113 --KELPEKMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 253 LAFLQIVDLADNNLSG---EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309
+ L + +AD N++ +P + L L ++ I +
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELH------------------LDGNK---ITKVD 208
Query: 310 EDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRI 368
+ + LN + + S N+ S + N L+ ++L+NN ++
Sbjct: 209 AASL-----------KGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 369 PESVGTMRSLESIDFSLNQLSG------EIPQSMSSLKFLNHLNLSNNNLT-GKIPSST 420
P + + ++ + N +S P + + ++L +N + +I ST
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 30/267 (11%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L TL L + + P L L LS + + + + L + N+
Sbjct: 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENE 132
Query: 74 IHGQIP--NLTNAAQLEVLSLGSNSFSIAL-------PLISSYLIELDFSNNSISGSIFH 124
I ++ Q+ V+ LG+N + + L + ++ +I+ +I
Sbjct: 133 IT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIADTNIT-TI-- 186
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
L+L GN + NL L LS N + SL + L
Sbjct: 187 ----PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 185 QSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE-----NIPTWIRERFSRIVVLILRS 239
+ LHL N L L + + + + N + P + + + L S
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302
Query: 240 NK--FYNLLPKELCDLAFLQIVDLADN 264
N ++ + P + V L +
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L+ + + ++ + P L L L L + I + + + L LSFN
Sbjct: 172 KLSYIRIADTNI-TTIPQGLPP--SLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNS 227
Query: 74 IHGQIPN--LTNAAQLEVLSLGSNSFSI---ALPLISSYLIELDFSNNSIS---GSIFHF 125
I + N L N L L L +N L + + NN+IS + F
Sbjct: 228 IS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIGSNDFCP 285
Query: 126 ICYRANELNKWQILYLSGNFLQGEL--PDCWMNYQNLMILDLSNNK 169
Y + + L N +Q P + + L N K
Sbjct: 286 PGYNTK-KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 39/208 (18%)
Query: 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR 278
+++P +L L++NK + + +L L + L +N +S P L
Sbjct: 48 KDLPPDTA-------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 279 AMVTMN----------SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328
+ + K +Q L I + + F LN
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQE---LRVHENE-ITKVRKSVF-----------NGLN 145
Query: 329 LVRIIDFSKNNF-SGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386
+ +++ N S I +K L + +++ T IP+ G SL + N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGN 202
Query: 387 QLSGEIPQSM-SSLKFLNHLNLSNNNLT 413
+++ ++ + L L L LS N+++
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSIS 229
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-13
Identities = 24/166 (14%), Positives = 61/166 (36%), Gaps = 8/166 (4%)
Query: 53 IPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIEL 111
NI + + + + L+ + + + A ++ L++ + + P+ S L L
Sbjct: 35 TANITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERL 93
Query: 112 DFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171
++ + + L +L +S + + + +DLS N
Sbjct: 94 RIMGKDVTSDKIPNL----SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 172 GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL 217
++ L +L L+SL+++ + + +E+ L L +
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGV-HDYRGIEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390
+ + + + + P+ L L+ + + T ++ + SL +D S +
Sbjct: 69 KDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 391 EIPQSMSSLKFLNHLNLSNNNLTGKIPS 418
I +++L +N ++LS N I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP 154
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390
+ + + ++ L L +++S++ I + T+ + SID S N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 391 EIPQSMSSLKFLNHLNLSNNNLTGKIPSS--TQLQSFDASS 429
+I + +L L LN+ + + +L A S
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
++ + L + I+ + SL + L N+ + +E + L +
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV-TDLTGIEYAHNIKDLTINNI 76
Query: 216 EL--VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
I S + L + + L L L ++D++ + +
Sbjct: 77 HATNYNPI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
Query: 274 IHNL 277
I+ L
Sbjct: 132 INTL 135
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 4 KVNDNWIPPF----QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWS 59
V + IP L L + H + + + +N +DLSY+G I I +
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--K 156
Query: 60 SASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 98
+ ++ L++ F+ +H + + +L L S +
Sbjct: 157 TLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIG 194
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L + + S L L LD+S+S +I ++ ++ +DLS+N
Sbjct: 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNG 147
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISG 120
I L +L+ L++ + + L +L + +I G
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 32/160 (20%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
L Y+ L+ + + I A I L ++ ++ + LE L +
Sbjct: 44 NSLTYITLANINV-TDLTGI--EYAHNIKDLTINNIHATN-YNPISGLSNLERLRIMGKD 99
Query: 97 FS-IALPLIS--SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELP-- 151
+ +P +S + L LD S+++ SI I N L K + LS N ++
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI----NTLPKVNSIDLSYNGAITDIMPL 155
Query: 152 ---------DCWMNY----------QNLMILDLSNNKFTG 172
+ + L L + G
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 13/111 (11%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
+L + L+N T I +++ L + + + + + L L +
Sbjct: 42 QMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGK 98
Query: 216 ELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNL 266
++ + + + + +L + + + + ++ L + +DL+ N
Sbjct: 99 DVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 36/260 (13%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
L L + + +HL L LS + I TI ++ + + L+L
Sbjct: 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121
Query: 72 NQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYR 129
N++ IPN ++L+ L L +N SI F+
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE------------------SIPSYAFNR---- 158
Query: 130 ANELNKWQILYLSG-NFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188
+ + L L L + NL L+L+ +P +L LI L L
Sbjct: 159 ---IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213
Query: 189 LRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246
L N+L I S + L L + ++++ + I + +V + L N L
Sbjct: 214 LSGNHL-SAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 247 PKELCDLAFLQIVDLADNNL 266
L L+ + L N
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 55/257 (21%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMTLDVGENE 216
N +L+L N+ S L L+ L L +N++ TI + L TL++ +N
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNR 123
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276
L IP S++ L LR+N ++ + L+ +DL +
Sbjct: 124 L-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR---------- 172
Query: 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336
++ + E AF L+ +R ++ +
Sbjct: 173 ----------------------------LSYISEGAF-----------EGLSNLRYLNLA 193
Query: 337 KNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396
N +IP +T L L ++LS N + P S + L+ + +Q+ +
Sbjct: 194 MCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251
Query: 397 SSLKFLNHLNLSNNNLT 413
+L+ L +NL++NNLT
Sbjct: 252 DNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 54/280 (19%), Positives = 97/280 (34%), Gaps = 59/280 (21%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
++L L N +Q + + + ++L IL LS N + L +L +L L N L
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-T 125
Query: 197 TIHS--LENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL-RSNKFYNLLPKELCDL 253
TI + + L L + N + E+IP++ R + L L + + L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
+ L+ ++LA NL I NL ++ +
Sbjct: 185 SNLRYLNLAMCNLRE-----IPNLTPLIKL------------------------------ 209
Query: 314 VVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV 372
L+L S N+ S I L LQ + + + +
Sbjct: 210 -----------DELDL------SGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251
Query: 373 GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
++SL I+ + N L+ + L L ++L +N
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 43/265 (16%)
Query: 104 ISSYLIELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160
IS+ L+ N I + F L +IL LS N ++ + NL
Sbjct: 62 ISTNTRLLNLHENQIQIIKVNSFK-------HLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 161 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGENELV 218
L+L +N+ T + L L+ L LR N + +I S +L LD+GE + +
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRL 173
Query: 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR 278
I E S + L L + L L L +DL+ N+LS P L
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 279 AMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKN 338
+ + + I + +AF L + I+ + N
Sbjct: 232 HLQKLWMIQSQ---------------IQVIERNAF-----------DNLQSLVEINLAHN 265
Query: 339 NFSGKIPLEV-TNLKVLQSVNLSNN 362
N + +P ++ T L L+ ++L +N
Sbjct: 266 NLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 9e-06
Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 50/229 (21%)
Query: 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAM 280
+P I + +L L N+ + L L+I+ L+ N++ + L +
Sbjct: 58 VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 281 VTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340
T+ L+ +R + T+ AF L+ ++ + N
Sbjct: 115 NTLE------------LFDNR---LTTIPNGAF-----------VYLSKLKELWLRNNPI 148
Query: 341 SGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSS 398
IP + L+ ++L I E + +L ++ ++ L EIP +++
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP 205
Query: 399 LKFLNHLNLSNNNLTGKIP---------------SSTQLQSFDASSFSG 432
L L+ L+LS N+L+ I +Q+Q + ++F
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 7e-13
Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 55/257 (21%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMTLDVGENE 216
N L+L N + L L+ L L +N++ I + +L TL++ +N
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNW 134
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276
L IP+ E S++ L LR+N ++ + L +DL +
Sbjct: 135 LTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK---------- 183
Query: 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336
+ + E AF L ++ ++
Sbjct: 184 ----------------------------LEYISEGAF-----------EGLFNLKYLNLG 204
Query: 337 KNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396
N +P +T L L+ + +S N F P S + SL+ + +Q+S +
Sbjct: 205 MCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262
Query: 397 SSLKFLNHLNLSNNNLT 413
L L LNL++NNL+
Sbjct: 263 DGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 49/260 (18%), Positives = 85/260 (32%), Gaps = 36/260 (13%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P L L ++ HL L L + I I ++ + + L+L
Sbjct: 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFD 132
Query: 72 NQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYR 129
N + IP+ ++L L L +N SI F+
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE------------------SIPSYAFNR---- 169
Query: 130 ANELNKWQILYLSG-NFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188
+ L L L+ + NL L+L ++P +L L+ L+ L
Sbjct: 170 ---VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224
Query: 189 LRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246
+ N+ I S ++L L V +++ I + + +V L L N +L
Sbjct: 225 MSGNHF-PEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLP 282
Query: 247 PKELCDLAFLQIVDLADNNL 266
L +L + L N
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 56/284 (19%), Positives = 104/284 (36%), Gaps = 45/284 (15%)
Query: 86 QLEVLSLGSNSFSIALPL-ISSYLIELDFSNN---SISGSIFHFICYRANELNKWQILYL 141
Q + S +P I S L+ N I F L+ ++L L
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFR-------HLHHLEVLQL 106
Query: 142 SGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS- 200
N ++ + +L L+L +N T + L L+ L LR N + +I S
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSY 165
Query: 201 -LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIV 259
+LM LD+GE + +E I E + L L ++ L L L+ +
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEEL 223
Query: 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR 319
+++ N+ P H L ++ + + ++ + +AF
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ---------------VSLIERNAF------ 262
Query: 320 EAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNN 362
L + ++ + NN S +P ++ T L+ L ++L +N
Sbjct: 263 -----DGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 59/280 (21%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
+ L L N +Q D + + +L +L L N + L SL +L L N L
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-T 136
Query: 197 TIHS--LENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL-RSNKFYNLLPKELCDL 253
I S E + L L + N + E+IP++ R ++ L L K + L
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
L+ ++L N+ + NL +V +
Sbjct: 196 FNLKYLNLGMCNIKD-----MPNLTPLVGL------------------------------ 220
Query: 314 VVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV 372
L + S N+F +I L L+ + + N+ + +
Sbjct: 221 -----------EELEM------SGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262
Query: 373 GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412
+ SL ++ + N LS + L++L L+L +N
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 50/229 (21%)
Query: 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAM 280
+P I S L L N + L L+++ L N++ + L ++
Sbjct: 69 VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 281 VTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340
T+ L+ + + + AF L+ +R + N
Sbjct: 126 NTLE------------LFDNW---LTVIPSGAF-----------EYLSKLRELWLRNNPI 159
Query: 341 SGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSS 398
IP + L ++L I E + +L+ ++ + + ++P +++
Sbjct: 160 E-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTP 216
Query: 399 LKFLNHLNLSNNNLTGKIPSST---------------QLQSFDASSFSG 432
L L L +S N+ +I + Q+ + ++F G
Sbjct: 217 LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 24/206 (11%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSN 95
++N + + SG + + S S LD S N + + N + +LE L L N
Sbjct: 300 SNMNIKNFTVSGT-RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 96 SFSIALPLISSY------LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE 149
L I+ L +LD S NS+S C L L +S N L
Sbjct: 359 QLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL---LSLNMSSNILTDT 414
Query: 150 LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTAL 207
+ C + +LDL +NK ++P + L +LQ L++ N L ++ + T+L
Sbjct: 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSL 470
Query: 208 MTLDVGEN------ELVENIPTWIRE 227
+ + N ++ + W+ +
Sbjct: 471 QKIWLHTNPWDCSCPRIDYLSRWLNK 496
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 69/419 (16%), Positives = 144/419 (34%), Gaps = 50/419 (11%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L H L +L +LDLS++ + + SQ+ L LS
Sbjct: 70 ELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
Query: 74 IH-GQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRA- 130
+ + + + +VL + ++ + FHFI +
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186
Query: 131 NELNKWQILYLSGNFLQGELPD------CWMNYQNLMILDLSNNKFTGNLPISLGSLI-- 182
+ ++ + + L L L+N + T N I + L+
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246
Query: 183 -SLQSLHLRKNNLCGTIH------SLENCTALMTLDVGENELVENIPTWIRERFSRIVVL 235
++ + L G + S + AL V + ++I E FS + +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIK 305
Query: 236 ILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQF 295
+ + ++ +D ++N L+ V +L + T+ +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ------ 359
Query: 296 LLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVL 354
+ L + A + + + ++ +D S+N+ S + K L
Sbjct: 360 ---------LKELSKIAEMTTQ---------MKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 355 QSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
S+N+S+N T I + ++ +D N++ IP+ + L+ L LN+++N L
Sbjct: 402 LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 9e-11
Identities = 64/403 (15%), Positives = 118/403 (29%), Gaps = 54/403 (13%)
Query: 66 VLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNNSISG 120
+L++S N I + + + ++L +L + N L + L LD S+N +
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK 83
Query: 121 SIFHFICYRANELNKWQILYLSGNFLQGELPDCWM--NYQNLMILDLSNNKFTGNLPISL 178
H + L LS N LP C N L L LS + + +
Sbjct: 84 ISCH-------PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135
Query: 179 GSLISLQSLHLRKNNLCGTIH--SLENCTAL-MTLDVGENELVENIPTWIRERFSRIVVL 235
L + L + L++ + + N+ I + + + +
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195
Query: 236 ILRSNKFYNLL------PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289
++ N +L L + L + + I L T+ +
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255
Query: 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT 349
++ Q L T +L + I + F
Sbjct: 256 NVKLQGQLDFRDFDYSGT------------------SLKALSIHQVVSDVFGFPQSYIYE 297
Query: 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409
+ N + + + +DFS N L+ + ++ L L L L
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357
Query: 410 NNLTGKIPSS-------TQLQSFDASSFSGNDLCRAPLSGNCS 445
N L ++ LQ D S N + G+CS
Sbjct: 358 NQLK-ELSKIAEMTTQMKSLQQLD---ISQNSVSYDEKKGDCS 396
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 51/246 (20%), Positives = 106/246 (43%), Gaps = 17/246 (6%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN-QIHGQIPNLTNAA--QLEVLSLGS 94
LN ++ +++ I + ++ ++ + ++ Q+ + + + + L + + S
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285
Query: 95 NSFSIALPLISSYLIELDFSNNSISGS-IFHFICYRANELNKWQILYLSGNFLQGELPDC 153
+ F I ++ N ++SG+ + H +C ++++ + L S N L + +
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP--SKISPFLHLDFSNNLLTDTVFEN 343
Query: 154 WMNYQNLMILDLSNNKFTGNLPISLG---SLISLQSLHLRKNNLCGTIH--SLENCTALM 208
+ L L L N+ L + SLQ L + +N++ +L+
Sbjct: 344 CGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402
Query: 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG 268
+L++ N L + I + RI VL L SNK +PK++ L LQ +++A N L
Sbjct: 403 SLNMSSNILTDTIFRCL---PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK- 457
Query: 269 EVPRCI 274
VP I
Sbjct: 458 SVPDGI 463
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 18/190 (9%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L L L L + L LDLS + + ++ + +++ L L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 74 IHGQIPN--LTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNN---SISGSIFH 124
+ ++ A L+ L L N+ ALP + L L N S+ F
Sbjct: 117 LQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF- 173
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
L+ L L N + P + + LM L L N + +L L +L
Sbjct: 174 ------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 185 QSLHLRKNNL 194
Q L L N
Sbjct: 228 QYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 25/214 (11%)
Query: 66 VLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSI----ALPLISSYLIELDFSNN--- 116
+ L N+I +P L +L L SN + A ++ L +LD S+N
Sbjct: 36 RIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDLSDNAQL 93
Query: 117 -SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP 175
S+ + FH L + L+L LQ P + L L L +N LP
Sbjct: 94 RSVDPATFHG-------LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP 145
Query: 176 I-SLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRI 232
+ L +L L L N + ++ + +L L + +N + ++ R+
Sbjct: 146 DDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRL 203
Query: 233 VVLILRSNKFYNLLPKELCDLAFLQIVDLADNNL 266
+ L L +N L + L L LQ + L DN
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-10
Identities = 47/233 (20%), Positives = 75/233 (32%), Gaps = 32/233 (13%)
Query: 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSF 71
P + L + + + ++L L L + + I ++ + + LDLS
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSD 89
Query: 72 NQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYR 129
N + +L L L + +F
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQ------------------ELGPGLFR----- 126
Query: 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL 189
L Q LYL N LQ D + + NL L L N+ + + L SL L L
Sbjct: 127 --GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 190 RKNNLCGTIHS--LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
+N + +H + LMTL + N L +PT + L L N
Sbjct: 185 HQNRV-AHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 15/182 (8%)
Query: 104 ISSYLIELDFSNNSIS---GSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160
I + + N IS + F IL+L N L + L
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFR-------ACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 161 MILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGENEL 217
LDLS+N ++ + L L +LHL + L + AL L + +N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNAL 141
Query: 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNL 277
+ +P + L L N+ ++ + L L + L N ++ P +L
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 278 RA 279
Sbjct: 201 GR 202
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 47/258 (18%), Positives = 77/258 (29%), Gaps = 57/258 (22%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGENE 216
+ L N+ + S + +L L L N L I + L LD+ +N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276
+ ++ R+ L L L P LA LQ + L DN L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--------- 142
Query: 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336
L +D F R L + +
Sbjct: 143 ------------------------------ALPDDTF-----------RDLGNLTHLFLH 161
Query: 337 KNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQ 394
N S +P L L + L N + + L ++ N LS +
Sbjct: 162 GNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 395 SMSSLKFLNHLNLSNNNL 412
+++ L+ L +L L++N
Sbjct: 220 ALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 29/187 (15%)
Query: 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288
+ + L N+ ++ L I+ L N L+ L +
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ------ 84
Query: 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV 348
L S + ++ F L + + + ++ +
Sbjct: 85 --------LDLSDNAQLRSVDPATF-----------HGLGRLHTLHLDRCGLQ-ELGPGL 124
Query: 349 -TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406
L LQ + L +N +P+ + +L + N++S ++ L L+ L
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 407 LSNNNLT 413
L N +
Sbjct: 184 LHQNRVA 190
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 9e-04
Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 32/212 (15%)
Query: 205 TALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADN 264
A + + N + ++P + +L L SN + LA L+ +DL+DN
Sbjct: 32 AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 265 NLSGEVP-RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKY 323
V H L + T++ L + L F
Sbjct: 91 AQLRSVDPATFHGLGRLHTLH------------LDRCG---LQELGPGLF---------- 125
Query: 324 ERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGRIPESV-GTMRSLESI 381
R L ++ + N +P + +L L + L N + +PE + SL+ +
Sbjct: 126 -RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRL 182
Query: 382 DFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
N+++ P + L L L L NNL+
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 46/233 (19%), Positives = 85/233 (36%), Gaps = 21/233 (9%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
++ + + S I ++ I + L L+ N++ I L N L L L N
Sbjct: 46 NSIDQIIANNSDIK-SVQGI--QYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENK 101
Query: 97 FSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
L L L +N IS I L + + LYL N +
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGIS-DINGL-----VHLPQLESLYLGNNKITD--ITVLS 153
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
L L L +N+ + ++ L L LQ+L+L KN++ + +L L L++
Sbjct: 154 RLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQ 210
Query: 216 ELVENIPTWIRERFSRIVVL-ILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
E + S +VV +++ + P+ + D + ++ +
Sbjct: 211 ECLNKPI----NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 43/256 (16%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
+L + + + + I + + + I + + + L L N
Sbjct: 24 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 79
Query: 97 FSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
+ PL + L L N + + +L K + L L N + ++ +
Sbjct: 80 LTDIKPLANLKNLGWLFLDENKVK-DLSSL-----KDLKKLKSLSLEHNGIS-DINGL-V 131
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
+ L L L NNK T ++ L L L +L L N + I L T L L + +N
Sbjct: 132 HLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188
Query: 216 ELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIH 275
+ ++ + L L L +++L +
Sbjct: 189 HI-SDL--------------------------RALAGLKNLDVLELFSQECLNKPINHQS 221
Query: 276 NLRAMVTMNSHAGKAI 291
NL T+ + G +
Sbjct: 222 NLVVPNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 42/262 (16%), Positives = 92/262 (35%), Gaps = 50/262 (19%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
+ + +L T ++ L S+ + +++ ++ ++ + L + N
Sbjct: 22 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN 78
Query: 216 EL--VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
+L ++ + + L L NK +L L DL L+ + L N +S
Sbjct: 79 KLTDIKPL-----ANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-----D 126
Query: 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPL--IATLLEDAFVVMKGREAKYERTLNLVR 331
I+ L + + S LY + I L L +
Sbjct: 127 INGLVHLPQLES-----------LYLGNNKITDITVL----------------SRLTKLD 159
Query: 332 IIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391
+ N S +PL L LQ++ LS N + ++ +++L+ ++ + +
Sbjct: 160 TLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNK 215
Query: 392 IPQSMSSLKFLNHLNLSNNNLT 413
S+L N + ++ +L
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 19/184 (10%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+ L L L P L + K+L +L L + + + ++ ++ L L N
Sbjct: 69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSSL--KDLKKLKSLSLEHNG 123
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANE 132
I I L + QLE L LG+N + L + L L +N IS I
Sbjct: 124 IS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPL-----AG 176
Query: 133 LNKWQILYLSGNFLQ--GELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190
L K Q LYLS N + L +NL +L+L + + +L+ ++
Sbjct: 177 LTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
Query: 191 KNNL 194
+L
Sbjct: 233 DGSL 236
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 25/200 (12%)
Query: 29 FPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTN 83
LYS +N LS S I + S S L+ + N L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDT-PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378
Query: 84 AAQLEVLSLGSNSFSIALPLISS------YLIELDFSNNSISGSIFHFICYRANELNKWQ 137
L+ L L N ++ L LD S NS++ + C A +
Sbjct: 379 ---LQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI---L 431
Query: 138 ILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT 197
+L LS N L G + C + +LDL NN+ ++P + L +LQ L++ N L +
Sbjct: 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KS 487
Query: 198 I--HSLENCTALMTLDVGEN 215
+ + T+L + + +N
Sbjct: 488 VPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 72/407 (17%), Positives = 120/407 (29%), Gaps = 54/407 (13%)
Query: 66 VLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIF 123
L LS N I ++ ++ ++L VL L N S+ +F
Sbjct: 56 ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR------------------SLDFHVF 96
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPIS--LGSL 181
F + L +S N LQ + C M +L LDLS N F LP+ G+L
Sbjct: 97 LF-------NQDLEYLDVSHNRLQ-NISCCPM--ASLRHLDLSFNDFD-VLPVCKEFGNL 145
Query: 182 ISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRI--VVLILRS 239
L L L L L + + + +I E VL L
Sbjct: 146 TKLTFLGLSAAKF--RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203
Query: 240 NKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYA 299
+ + + L + L++ L+ E + + + +T
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263
Query: 300 SRAPLIATLLEDAFV-------------VMKGREAKYERTLNLVRIIDFSKNNFSGKIPL 346
+ + V + + E L + I F
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323
Query: 347 EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406
+ + LS + + S ++F+ N + + Q S+LK L L
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 407 LSNNNLT---GKIPSSTQLQSFDASSFSGNDLCRAPLSGNCSEHVSI 450
L N L + + S + S N L C+ SI
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 71/420 (16%), Positives = 149/420 (35%), Gaps = 30/420 (7%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L H + S + L YLD+S++ + NI + + LDLSFN
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN----RLQNISCCPMASLRHLDLSFND 132
Query: 74 I-----HGQIPNLTNAAQLEVLSLGSNSF-SIALPLISS---YLIELDFSNNSISGSIFH 124
+ NLT L L L + F + L ++ I LD + I G
Sbjct: 133 FDVLPVCKEFGNLTK---LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
+ + S +Q + + + L + L++ +
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249
Query: 185 QSLHLRKNNLCGT------IHSLENCTALMTLDVGENELVENI----PTWIRERFSRIVV 234
L++ ++ T + + L++ + E I T+ +++
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309
Query: 235 LILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294
+++ F A + I L+ ++ C + + +N
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369
Query: 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF-SGKIPLEVTNLKV 353
F ++ L +L+ + + A + ++ + +D S N+ S +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429
Query: 354 LQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
+ +NLS+N TG + + ++ +D N++ IP+ ++ L+ L LN+++N L
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 1e-10
Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 16/263 (6%)
Query: 8 NWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVL 67
+ + L L F L + Q++
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE--QLFRC 354
Query: 68 DLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFIC 127
+LS + L + +L+ L + + + L+ L L + ++ +F
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ----YFST 410
Query: 128 YRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSL 187
+A + + L + E M Y ++ +L L++ T + L L+ + L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHL 468
Query: 188 HLRKNNLCGTIHSLENCTALMTLDVGENEL--VENIPTWIRERFSRIVVLILRSNKFYNL 245
L N L +L L L +N L V+ + R+ L+L +N+
Sbjct: 469 DLSHNRLRALPPALAALRCLEVLQASDNALENVDGV-----ANLPRLQELLLCNNRLQQS 523
Query: 246 -LPKELCDLAFLQIVDLADNNLS 267
+ L L +++L N+L
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 47/293 (16%), Positives = 86/293 (29%), Gaps = 37/293 (12%)
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193
L+ Q W + L ++ + L L
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEK 360
Query: 194 LCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
LE+C L L+ + ++L++R+ + L
Sbjct: 361 STVLQSELESCKELQELEP------------ENKWCLLTIILLMRALDPLLYEKETLQYF 408
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
+ L+ VD +RA + + ++ L + L
Sbjct: 409 STLKAVD---------------PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453
Query: 314 VVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373
V+ E L LV +D S N +P + L+ L+ + S+N + V
Sbjct: 454 TVLCHLEQ-----LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VA 505
Query: 374 TMRSLESIDFSLNQLSG-EIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSF 425
+ L+ + N+L Q + S L LNL N+L + +L
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 51/350 (14%), Positives = 103/350 (29%), Gaps = 48/350 (13%)
Query: 95 NSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW 154
+ + + FS GS + +E + + + +
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPL-SVEWRTPDGRNRPSHVWL 301
Query: 155 MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGE 214
+ + D + S L R C + E L ++
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ---LFRCELSV 358
Query: 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCI 274
+ ++ L + L + + L + L
Sbjct: 359 EKSTV-----LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-----F 408
Query: 275 HNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIID 334
L+A+ M + ++ +FLL S + VR++
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENS---------------------VLKMEYADVRVLH 447
Query: 335 FSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ 394
+ + + LE L ++ ++LS+N +P ++ +R LE + S N L +
Sbjct: 448 LAHKDLTVLCHLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD- 502
Query: 395 SMSSLKFLNHLNLSNNNLT-----GKIPSSTQLQSFDASSFSGNDLCRAP 439
+++L L L L NN L + S +L + GN LC+
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN---LQGNSLCQEE 549
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 8e-10
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 22/209 (10%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72
L + + + + ++S L+ + + + + I + + + L +S
Sbjct: 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114
Query: 73 QIHGQIPNLT--NAAQLEVLSLGSNSFSIALPL-----ISSYLIELDFSNN---SISGSI 122
I +P++ ++ Q +L + N + +S + L + N I S
Sbjct: 115 GIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173
Query: 123 FHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182
F N ++ N L+ D + +ILD+S + L +L
Sbjct: 174 F-------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226
Query: 183 SLQSLHLRKNNLCGTIHSLENCTALMTLD 211
L++ + +LE ALM
Sbjct: 227 KLRARSTYNLK---KLPTLEKLVALMEAS 252
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 34/232 (14%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLC 195
L L+ + + +L +++S N + +L L + + K N
Sbjct: 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92
Query: 196 GTIHS--LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKE-LCD 252
I+ +N L L + + +++P + + V+L ++ N + + +
Sbjct: 93 LYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 253 LAF-LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311
L+F I+ L N + E+ N + +N ++ L D
Sbjct: 152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE--------------ELPND 196
Query: 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNN 362
F + I+D S+ +P NLK L++ + N
Sbjct: 197 VF-----------HGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 37/184 (20%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
+ + S I ++ + + + L LS NQI + L + +LE LS+ N
Sbjct: 41 SGVQNFNGDNSNIQ-SLAGM--QFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNR 96
Query: 97 FSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMN 156
+ S+ L L NN + L
Sbjct: 97 LKNLNGIPSACLSRLFLDNNELR-----------------DTDSLIHL------------ 127
Query: 157 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENE 216
+NL IL + NNK ++ LG L L+ L L N + L + +D+ +
Sbjct: 128 -KNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQK 183
Query: 217 LVEN 220
V
Sbjct: 184 CVNE 187
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 17/201 (8%)
Query: 67 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHF 125
+L + + + + ++ + +++ + + L EL S+N IS +
Sbjct: 24 QNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSPL 81
Query: 126 ICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185
+L K + L ++ N L+ + L L L NN+ + L +L+
Sbjct: 82 -----KDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTDSLI--HLKNLE 131
Query: 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245
L +R N L +I L + L LD+ NE+ R ++ + L K N
Sbjct: 132 ILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGL---TRLKKVNWIDLTGQKCVNE 187
Query: 246 LPKELCDLAFLQIVDLADNNL 266
K +L V D
Sbjct: 188 PVKYQPELYITNTVKDPDGRW 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 21/162 (12%)
Query: 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSN 167
++ + S++ + EL+ Q + +Q + NL L LS+
Sbjct: 21 AVKQNLGKQSVT-DLVSQ-----KELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSH 72
Query: 168 NKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL--VENIPTWI 225
N+ + +L L L L+ L + +N L ++ + + L L + NEL +++
Sbjct: 73 NQIS-DLS-PLKDLTKLEELSVNRNRLK-NLNGIPSAC-LSRLFLDNNELRDTDSL---- 124
Query: 226 RERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
+ +L +R+NK +++ L L+ L+++DL N ++
Sbjct: 125 -IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT 163
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 36/219 (16%)
Query: 66 VLDLSFNQI----HGQIPNLTNAAQLEVLSLGSNSFSIALP------LISSYLIELDFSN 115
LDLSFN + + L+VL L + L L L +
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPE---LQVLDLSRCEIQ-TIEDGAYQSLSH--LSTLILTG 85
Query: 116 N---SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTG 172
N S++ F L+ Q L L + + L L++++N
Sbjct: 86 NPIQSLALGAFS-------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ- 137
Query: 173 NLPIS--LGSLISLQSLHLRKNNL----CGTIHSLENCTAL-MTLDVGENELVENIPTWI 225
+ + +L +L+ L L N + C + L L ++LD+ N + I
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGA 196
Query: 226 RERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADN 264
+ R+ L L +N+ ++ L LQ + L N
Sbjct: 197 FKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 29/216 (13%)
Query: 41 YLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-----NLTNAAQLEVLSLGSN 95
LDLS++ + F S ++ VLDLS +I I +L++ L L L N
Sbjct: 32 NLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQ-TIEDGAYQSLSH---LSTLILTGN 86
Query: 96 ---SFSIALPLISSYLIELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQG- 148
S ++ S L +L S+ L + L ++ N +Q
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-------HLKTLKELNVAHNLIQSF 139
Query: 149 ELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ----SLHLRKNNLCGTIHSLENC 204
+LP+ + N NL LDLS+NK L L + SL L N +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 205 TALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L L + N+L +++P I +R + + + L +N
Sbjct: 200 IRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL----CGTIHSLENCTALMTLDVGE 214
+ LDLS N S S LQ L L + + G SL + L TL +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILTG 85
Query: 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
N + +++ S + L+ +L + L L+ +++A N +
Sbjct: 86 NPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 37/283 (13%), Positives = 92/283 (32%), Gaps = 90/283 (31%)
Query: 10 IPPFQLATLGLRHCHLGSRFPSWLY------------SQKHLN-------YLDLSYSGII 50
P +L+ + + + +W + S L + LS +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VF 381
Query: 51 --GT-IP----NIFWSSASQIYVLDLSFNQIHGQ-------------IPNLTNAAQLEVL 90
IP ++ W + + + N++H IP++ LE+
Sbjct: 382 PPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSI----YLELK 436
Query: 91 SLGSNSFSIALPLISSYLIELDFSNNSIS-----GSIFHFICY------RANELNKWQIL 139
N +++ ++ Y I F ++ + + I + + ++++
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 140 YLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS-LQSLHLRKNNLCGTI 198
+L FL+ ++ + + GS+++ LQ L K +C
Sbjct: 497 FLDFRFLEQKI------------------RHDSTAWNASGSILNTLQQLKFYKPYIC--- 535
Query: 199 HSLENCTALMTLDVGENELVENIPTW----IRERFSRIVVLIL 237
+N L N +++ +P I +++ ++ + L
Sbjct: 536 ---DNDPKYERL---VNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 79/454 (17%), Positives = 146/454 (32%), Gaps = 133/454 (29%)
Query: 55 NIFWSSASQ--------------IYVLDLSFNQIHGQIPNL---TNAAQLEVLSLGSNSF 97
IFW + +Y +D ++ N+ ++ Q E+ L +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK- 241
Query: 98 SIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQIL----------YLSGN--- 144
P + L+ L+ N + F+ C +IL +LS
Sbjct: 242 ----PYENCLLVLLNVQNAKAWNA-FNLSC---------KILLTTRFKQVTDFLSAATTT 287
Query: 145 ----------FLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI--SLQS------ 186
E+ + Y + DL T N P L S+I S++
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRL-SIIAESIRDGLATWD 345
Query: 187 --LHLRKNNLCGTIH-SLENCTALMTLDVGE-----NELV-----ENIPT------WIRE 227
H+ + L I SL L+ E + L +IPT W +
Sbjct: 346 NWKHVNCDKLTTIIESSLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIW-FD 398
Query: 228 RFSRIVVLILRSNKFYN--LLPKELCDLAFLQIVDLA-DNNLSGEVPRCIHNLRAMVTMN 284
V++++ NK + L+ K+ + I + + + E +H R++V
Sbjct: 399 VIKSDVMVVV--NKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALH--RSIVD-- 451
Query: 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKG---REAKYERTLNLVRII--DFSKNN 339
Y LI L+ F G + ++ + L R++ DF
Sbjct: 452 -------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---R 501
Query: 340 F-SGKIPLEVTN-------LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391
F KI + T L LQ + + P+ + ++ +DF L ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDF-LPKIEEN 558
Query: 392 IPQSMSSLKFLNHLNLSNNNLTGKI--PSSTQLQ 423
+ S K+ + L ++ I + Q+Q
Sbjct: 559 LICS----KYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 18/163 (11%)
Query: 39 LNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 98
L LS + + +++ L+L ++ ++ L L L N
Sbjct: 33 TTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 99 IALPLISSY---LIELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQGELPD 152
+LPL+ L LD S N S+ L + Q LYL GN L+ P
Sbjct: 91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALR-------GLGELQELYLKGNELKTLPPG 142
Query: 153 CWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNL 194
L L L+NN T LP L L +L +L L++N+L
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLC- 195
IL+LS N L M Y L L+L + T L + G+L L +L L N L
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQS 91
Query: 196 --GTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
+L AL LDV N L ++P + L L+ N+ L P L
Sbjct: 92 LPLLGQTL---PALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 254 AFLQIVDLADNNLS 267
L+ + LA+NNL+
Sbjct: 148 PKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 33/181 (18%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
+L L L L + L LDLS++ + ++P + + + VLD+SFN+
Sbjct: 56 RLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL-QSLPLLG-QTLPALTVLDVSFNR 111
Query: 74 IHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRAN 131
+ +P L +L+ L L N ++ +
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGNELK------------------TLPPGLL-------T 145
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
K + L L+ N L +NL L L N +P L L
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204
Query: 192 N 192
N
Sbjct: 205 N 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELV 218
+ IL LS N +L L L+L + L + L TLD+ N+L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQL- 89
Query: 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
+++P + + VL + N+ +L L L LQ + L N L
Sbjct: 90 QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 49/294 (16%), Positives = 96/294 (32%), Gaps = 55/294 (18%)
Query: 11 PPFQLATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSGI----IGTIPNIFWSSAS 62
P ++ L L++C L S L + L L LS + + + +
Sbjct: 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142
Query: 63 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSI 122
++ L L + + + + L EL SNN I+ +
Sbjct: 143 RLEKLQLEYCSLS---------------AASCEPLASVLR-AKPDFKELTVSNNDINEAG 186
Query: 123 FHFICYRANELNKWQI--LYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGN--- 173
+C + + + Q+ L L + + L + +L L L +NK
Sbjct: 187 VRVLC-QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 174 --LPISLGSLISLQSLHLRKNNL----CGTI-HSLENCTALMTLDVGENEL----VENIP 222
P L L++L + + + CG + L +L L + NEL +
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305
Query: 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLA-------FLQIVDLADNNLSGE 269
+ E ++ L ++S + + FL + +++N L
Sbjct: 306 ETLLEPGCQLESLWVKSC---SFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 39/230 (16%)
Query: 11 PPFQLATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSGI----IGTIPNIFWSSAS 62
P QL L L C + S + S+ L L L + + + + +S
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256
Query: 63 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSI 122
++ L + I + G L L EL + N +
Sbjct: 257 RLRTLWIWECGITAK---------------GCGDLCRVLRA-KESLKELSLAGNELGDEG 300
Query: 123 FHFICYRANELNKW-QILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFT--GNLP 175
+C E + L++ + L+ L +SNN+ G
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360
Query: 176 ISLG---SLISLQSLHLRKNNL----CGTI-HSLENCTALMTLDVGENEL 217
+ G L+ L L ++ C ++ +L +L LD+ N L
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 72/459 (15%), Positives = 146/459 (31%), Gaps = 83/459 (18%)
Query: 15 LATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGI----IGTIPNIFWSSASQIYVLDL 69
+ +L ++ L + L + + L G+ I + + L+L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNL 63
Query: 70 SFNQIHGQ-IPNLTNA-----AQLEVLSLGSNSFS------IALPLIS-SYLIELDFSNN 116
N++ + + +++ LSL + + ++ L + L EL S+N
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
Query: 117 SISGSIFHFICYRANELN-KWQILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKF- 170
+ + +C + + + L L L L + L +SNN
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Query: 171 -TGNLPISLG---SLISLQSLHLRKNNL----CGTIHS-LENCTALMTLDVGENEL---- 217
G + G S L++L L + C + + + +L L +G N+L
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 218 VENIPTWIRERFSRIVVLILRSNKF----YNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273
+ + + SR+ L + L + L L+ + LA N L E
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE---- 299
Query: 274 IHNLRAMVTMNSHAGKAIQYQFLLY----ASRAPLIATLLEDAFVVMKGREAKYERTLNL 329
R + G ++ ++ A+ +++L R L
Sbjct: 300 --GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL------------AQNRFL-- 343
Query: 330 VRIIDFSKNNFSGK------IPLEVTNLKVLQSVNLSNNFFT----GRIPESVGTMRSLE 379
+ S N L VL+ + L++ + + ++ SL
Sbjct: 344 -LELQISNNRLEDAGVRELCQGLGQPG-SVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401
Query: 380 SIDFSLNQLSGEIPQSMS-SLK----FLNHLNLSNNNLT 413
+D S N L + S++ L L L + +
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 43/345 (12%), Positives = 102/345 (29%), Gaps = 83/345 (24%)
Query: 104 ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE----LPDCWMNYQN 159
+S + LD +S + + + L + Q++ L L +
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 57
Query: 160 LMILDLSNNKFTGNLPISLGSLI-----SLQSLHLRKNNL----CGTI-HSLENCTALMT 209
L L+L +N+ + + +Q L L+ L CG + +L L
Sbjct: 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 210 LDVGENEL----VENIPTWIRERFSRIVVLILRSNKFYN----LLPKELCDLAFLQIVDL 261
L + +N L ++ + + + R+ L L L L + + +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177
Query: 262 ADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREA 321
++N+++ ++ L+D+
Sbjct: 178 SNNDINEAG-------------------------------VRVLCQGLKDS--------- 197
Query: 322 KYERTLNLVRIIDFSKNNFSGK----IPLEVTNLKVLQSVNLSNNFFTGR-----IPESV 372
L + + + V + L+ + L +N P +
Sbjct: 198 ----PCQL-EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252
Query: 373 GTMRSLESIDFSLNQLSGE----IPQSMSSLKFLNHLNLSNNNLT 413
L ++ ++ + + + + + + L L+L+ N L
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 35/158 (22%)
Query: 66 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSI--ALPLISSYLIELDFSNNSISGSIF 123
++ L+ I Q TNA + L L + L +DFS+N I
Sbjct: 1 MVKLTAELIE-QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---- 55
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 183
+L+ + +L + L L ++NN+ +L
Sbjct: 56 --------KLDGFPLL------------------RRLKTLLVNNNRICRIGEGLDQALPD 89
Query: 184 LQSLHLRKNNLC--GTIHSLENCTALMTLDVGENELVE 219
L L L N+L G + L + +L L + N +
Sbjct: 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 177 SLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL--VENIPTWIRERFSRIVV 234
+ + + L LR + + +D +NE+ ++ P R+
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP-----LLRRLKT 68
Query: 235 LILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
L++ +N+ + L L + L +N+L
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 22/142 (15%)
Query: 66 VLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLIS----SYLIELDFSNN--- 116
+LDLS N + T L L L N + + + L LD S+N
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101
Query: 117 SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP- 175
++ +F +L ++L L N + + + + L L LS N+ + P
Sbjct: 102 TLDEFLFS-------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153
Query: 176 ---ISLGSLISLQSLHLRKNNL 194
L L L L N L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKL 175
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 159 NLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLCGTIHS--LENCTALMTLDVGEN 215
+LDLS+N + + L +L SL L N+L I S L LD+ N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSN 98
Query: 216 ELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
L + ++ + VL+L +N + D+A LQ + L+ N +S
Sbjct: 99 HL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 36/191 (18%)
Query: 10 IPPFQLATLGLRHCHLGSRFPSW-LYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLD 68
+P A L L H +L W +L+ L LS++ + I + + + LD
Sbjct: 37 LPS-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLD 94
Query: 69 LSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFI 126
LS N +H + ++ LEVL L +N + + F
Sbjct: 95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV------------------VVDRNAFED- 134
Query: 127 CYRANELNKWQILYLSGNFLQGELP----DCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182
+ + Q LYLS N + P LM+LDLS+NK L L
Sbjct: 135 ------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Query: 183 SLQSLHLRKNN 193
+ L +N
Sbjct: 188 AWVKNGLYLHN 198
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 66 VLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSIALP------LISSYLIELDFSNN- 116
+ L N I IP + +L + L +N S L L S L L N
Sbjct: 36 EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS--LNSLVLYGNK 91
Query: 117 --SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNL 174
+ S+F L Q+L L+ N + D + + NL +L L +NK
Sbjct: 92 ITELPKSLFE-------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144
Query: 175 PISLGSLISLQSLHLRKN 192
+ L ++Q++HL +N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 163 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNL----CGTIHSLENCTALMTLDVGENELV 218
+ L N P + L+ + L N + L + L +L + N++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---LNSLVLYGNKI- 92
Query: 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR 278
+P + E + +L+L +NK L DL L ++ L DN L LR
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 279 AMVTM 283
A+ TM
Sbjct: 153 AIQTM 157
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 37/248 (14%)
Query: 11 PPFQLATLGLRHCHLGSRFPSWL-----YSQKHLNYLDLSYSGI----IGTIPNIFWSSA 61
PF + L L S+ S + L+L + + + I +
Sbjct: 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166
Query: 62 SQIYVLDLSFNQIHGQ-IPNLTNA-----AQLEVLSLGSNSF--------SIALPLISSY 107
+ + L+L N + + L A + L L +N + I ++
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226
Query: 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC-------WMNYQNL 160
++ L+ N + G + + L Q +YL + ++ + + N Q +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 161 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVEN 220
+++D + + + I + +LI S +L N + N N
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL-------NQCLIFAQKHQTNIEDLN 339
Query: 221 IPTWIRER 228
IP +RE
Sbjct: 340 IPDELRES 347
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 47/286 (16%), Positives = 87/286 (30%), Gaps = 50/286 (17%)
Query: 33 LYSQKHLNYLDLSYSGI----IGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 88
+ LDLS + + + F ++ + + L+LS N + +
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK----------- 66
Query: 89 VLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKW-QILYLSGNFLQ 147
S+ L I + + L+ S N +S + + +L L N
Sbjct: 67 ----NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122
Query: 148 GE--------LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI-----SLQSLHLRKNNL 194
+ + ++ L+L N L ++ ++ SL+LR NNL
Sbjct: 123 SKSSSEFKQAFSNL---PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179
Query: 195 ----CGTIHSL--ENCTALMTLDVGENEL----VENIPTWIRERFSRIVVLILRSNKFYN 244
C + ++ +LD+ N L + + +V L L N +
Sbjct: 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239
Query: 245 ----LLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSH 286
L L LQ V L + + L A
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 33/256 (12%), Positives = 76/256 (29%), Gaps = 58/256 (22%)
Query: 15 LATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSGI-------IGTIPNIFWSSASQ 63
+ L+ + + + L + + LS + I + +S
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN----IASKKD 61
Query: 64 IYVLDLSFNQIHGQIPN------------LTNAAQLEVLSLGSNSFS------IALPLIS 105
+ + + S G++ + L +L + L N+F + L
Sbjct: 62 LEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 106 -SYLIELDFSNNSIS--------GSIFHFICYRANELNKW-QILYLSGNFLQGE----LP 151
+ L L NN + ++ + + + + N L+
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180
Query: 152 DCWMNYQNLMILDLSNNKFT-----GNLPISLGSLISLQSLHLRKNNLC--GTIH---SL 201
+ +++ L + + N L L L+ L L+ N G+ +L
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240
Query: 202 ENCTALMTLDVGENEL 217
++ L L + + L
Sbjct: 241 KSWPNLRELGLNDCLL 256
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 50/367 (13%), Positives = 109/367 (29%), Gaps = 96/367 (26%)
Query: 87 LEVLSLGSNSFS------IALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQIL 139
+E SL ++ + + L+ + E+ S N+I ++ +I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 140 YLSGNF---LQGELPDCW-------MNYQNLMILDLSNNKFTGNLPISLGSLI----SLQ 185
S F ++ E+P+ + L + LS+N F L + L+
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN- 244
L+L N L + + L E + + +I N+ N
Sbjct: 126 HLYLHNNGL-----GPQAGAKIARA------LQELAVNKKAKNAPPLRSIICGRNRLENG 174
Query: 245 ---LLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASR 301
K L V + N + G
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIR------------------PEG------------- 203
Query: 302 APLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK----IPLEVTNLKVLQSV 357
I LL + + L +++D N F+ + + + + L+ +
Sbjct: 204 ---IEHLLLEGLAYCQ--------EL---KVLDLQDNTFTHLGSSALAIALKSWPNLREL 249
Query: 358 NLSNNFFTGR----IPES--VGTMRSLESIDFSLNQLSGE----IPQSM-SSLKFLNHLN 406
L++ + R + ++ L+++ N++ + + + + L L
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309
Query: 407 LSNNNLT 413
L+ N +
Sbjct: 310 LNGNRFS 316
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 67 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHF 125
L I L+ + L+L +N+ L L L N I
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK----- 84
Query: 126 ICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPIS-LGSLISL 184
I + + L++S N + NL +L +SNNK T I L +L L
Sbjct: 85 IENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142
Query: 185 QSLHLRKNNLC 195
+ L L N L
Sbjct: 143 EDLLLAGNPLY 153
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 156 NYQNLMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGE 214
+ L LS N IS L + +L+ L L +N + + L L +
Sbjct: 46 TLKACKHLALSTNNIEK---ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102
Query: 215 NEL--VENIPTWIRERFSRIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADN 264
N++ + I E+ + VL + +NK N +L L L+ + LA N
Sbjct: 103 NQIASLSGI-----EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 163 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL--VEN 220
L + +L +L + + L L NN+ I SL L L +G N + +EN
Sbjct: 30 LHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIKKIEN 87
Query: 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLS 267
+ + L + N+ +L + L L+++ +++N ++
Sbjct: 88 LDA----VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKIT 128
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 131 NELNKWQILYLSGNFLQ--GELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188
+E + + L L LP L L+LS+N+ +G L + +L L+
Sbjct: 39 DEFEELEFLSTINVGLTSIANLPKLN----KLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94
Query: 189 LRKNNLC--GTIHSLENCTALMTLDVGENELVE 219
L N + TI L+ L +LD+ E+
Sbjct: 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Query: 156 NYQNLMILDLSNNKFT-GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGE 214
++ L L N++ G L L+ L L +I +L L L++ +
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSD 73
Query: 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLL-PKELCDLAFLQIVDLADN 264
N + + E+ + L L NK +L + L L L+ +DL +
Sbjct: 74 NRV-SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 316 MKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTM 375
++ R + L L D S++N GK+ + L+ ++ N T I ++ +
Sbjct: 11 LRNRTPSDVKELVL----DNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKL 63
Query: 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
L+ ++ S N++SG + L HLNLS N +
Sbjct: 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191
E + L L L + + L L+LS N+ G L + L +L L+L
Sbjct: 47 EFVNLEFLSLINVGLI-SVSNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 192 NNLC--GTIHSLENCTALMTLDVGENELVE 219
N L T+ L+ L +LD+ E+
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTN 134
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 154 WMNYQNLMILDLSNNKFT-GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDV 212
+ L L N K G + ++L+ L L L ++ +L L L++
Sbjct: 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLEL 78
Query: 213 GENELVENIPTWIRERFSRIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADN 264
EN + + E+ + L L NK ++ + L L L+ +DL +
Sbjct: 79 SENRI-FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 316 MKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTM 375
++ R R L L D K+N GKI L+ ++L N + ++ +
Sbjct: 18 LRNRTPAAVRELVL----DNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKL 70
Query: 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413
L+ ++ S N++ G + L L HLNLS N L
Sbjct: 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 187 LHLRKNNLCGTIHSLENCTALMTLDVGENEL--VENIPTWIRERFSRIVVLILRSNKFYN 244
L K+N L L + L V N+P + ++ L L N+ +
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLELSENRIFG 85
Query: 245 LLPKELCDLAFLQIVDLADNNLS 267
L L L ++L+ N L
Sbjct: 86 GLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 28/257 (10%), Positives = 69/257 (26%), Gaps = 57/257 (22%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENE 216
+ L L + +L ++ +++ + + HS N + + +++
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 217 LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD-LAFLQIVDLADNNLSGEVPRCIH 275
+ I + + L + + I+++ DN
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY--------- 142
Query: 276 NLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335
+ ++ +AF + N +
Sbjct: 143 -----------------------------MTSIPVNAFQGLC----------NETLTLKL 163
Query: 336 SKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV--GTMRSLESIDFSLNQLS---G 390
N F+ + N L +V L+ N + I + G +D S ++
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222
Query: 391 EIPQSMSSLKFLNHLNL 407
+ + + L N L
Sbjct: 223 KGLEHLKELIARNTWTL 239
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 44/219 (20%)
Query: 37 KHLNYLDLSYSGIIGTIP-NIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLG 93
+++ + +S + + + F + S++ +++ + I L L+ L +
Sbjct: 55 PNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113
Query: 94 SNSFSI--ALPLISS--YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE 149
+ + L + S L+ ++N + + N QG
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNP-------------------YMTSIPVNAFQG- 153
Query: 150 LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS---LENCTA 206
L + + L L NN FT ++ + L +++L KN I +
Sbjct: 154 LCN------ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206
Query: 207 LMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245
LDV + + +P+ + LI R+ + L
Sbjct: 207 PSLLDVSQTSV-TALPSKG---LEHLKELIARNT--WTL 239
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 16/181 (8%)
Query: 100 ALPLISSYLIELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQGELP-DCWM 155
+P + L +I F L +Y+S + +L +
Sbjct: 25 RIPSLPPSTQTLKLIETHLRTIPSHAFS-------NLPNISRIYVSIDVTLQQLESHSFY 77
Query: 156 NYQNLMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLC--GTIHSLENCTALMTLDV 212
N + +++ N + + L L L+ L + L + + + L++
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137
Query: 213 GENELVENIPTWI-RERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVP 271
+N + +IP + + + L L +N F + + + L V L N +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVID 196
Query: 272 R 272
+
Sbjct: 197 K 197
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 6e-05
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 344 IPLEVTNLKVLQSVNLSNNFFTGRIP-ESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFL 402
+ + L + + N + + + L ++ + L P + L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 403 NHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGN 443
+ LNLS N L S + G L LSGN
Sbjct: 83 SRLNLSFNALE----------SLSWKTVQGLSLQELVLSGN 113
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 28/153 (18%)
Query: 42 LDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSI 99
L L+ + + Q+ ++ S N+I I A+ + + L SN
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE- 94
Query: 100 ALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQN 159
++ +F L + L L N + D ++ +
Sbjct: 95 -----------------NVQHKMFK-------GLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
+ +L L +N+ T P + +L SL +L+L N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 21/146 (14%)
Query: 104 ISSYLIELDFSNNSIS----GSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQN 159
I Y EL +NN + IF +L + + + S N + +
Sbjct: 30 IPQYTAELRLNNNEFTVLEATGIFK-------KLPQLRKINFSNNKITDIEEGAFEGASG 82
Query: 160 LMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNL----CGTIHSLENCTALMTLDVGE 214
+ + L++N+ N+ + L SL++L LR N + + L +++ L + +
Sbjct: 83 VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL---SSVRLLSLYD 138
Query: 215 NELVENIPTWIRERFSRIVVLILRSN 240
N++ + + + L L +N
Sbjct: 139 NQI-TTVAPGAFDTLHSLSTLNLLAN 163
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 27/168 (16%)
Query: 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQLEVLSLG 93
L L L+ + + IF + L ++ N++ G L N L L L
Sbjct: 62 KLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLD 117
Query: 94 SNSFSIALP------LISSYLIELDFSNN---SISGSIFHFICYRANELNKWQILYLSGN 144
N +LP L L L N S+ +F ++L + L L N
Sbjct: 118 RNQLK-SLPPRVFDSLTK--LTYLSLGYNELQSLPKGVF-------DKLTSLKELRLYNN 167
Query: 145 FLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192
L+ + L L L NN+ + SL L+ L L++N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 33/170 (19%)
Query: 41 YLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-----NLTNAAQLEVLSLGSN 95
LDL + + F +++ +L L+ N++ +P L N LE L + N
Sbjct: 41 KLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNKLQ-TLPAGIFKELKN---LETLWVTDN 95
Query: 96 SFSIALPL-ISSYLI---ELDFSNN---SISGSIFHFICYRANELNKWQILYLSGNFLQG 148
ALP+ + L+ EL N S+ +F L K L L N LQ
Sbjct: 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-------SLTKLTYLSLGYNELQ- 146
Query: 149 ELP----DCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 194
LP D +L L L NN+ + L L++L L N L
Sbjct: 147 SLPKGVFD---KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNL- 194
+ L L N L + L +L L++NK LP + L +L++L + N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 195 ---CGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC 251
G L L L + N+L +++P + + +++ L L N+ + LPK +
Sbjct: 99 ALPIGVFDQL---VNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVF 153
Query: 252 D-LAFLQIVDLADNNLS 267
D L L+ + L +N L
Sbjct: 154 DKLTSLKELRLYNNQLK 170
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 47/306 (15%), Positives = 85/306 (27%), Gaps = 57/306 (18%)
Query: 17 TLGLRHCHLGSRFPSWLYS-QKHLNYLDLSYSGI----IGTIPNIFWSSASQIYVLDLSF 71
L H + + L L+L+ + + + S + ++L+
Sbjct: 51 LLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS 110
Query: 72 NQIHGQ-----IPNLTNAAQLEVLSLGSNSF--------SIALPLISSYLIELDFSNNSI 118
Q+ +P L L NS L + L SNN +
Sbjct: 111 CQLDPAGLRTLLPVFLR---ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167
Query: 119 SGSIFHFICYRANELNKW-QILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGN 173
+ + + N L L L E L + L L+++ N
Sbjct: 168 TAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226
Query: 174 ----LPISLGSLISLQSLHLRKNN--------LCGTIHSLENCTALMTLDVGEN------ 215
L + SL+ LHL N L + E ++
Sbjct: 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286
Query: 216 -----ELVENIPTWIRERFSRIVVLI---LRSNKFYNLLPKELCDL----AFLQIVDLAD 263
E+ N+ +W R R R + L+ L ++ L P L ++ +
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346
Query: 264 NNLSGE 269
+
Sbjct: 347 GSSGSP 352
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 2e-04
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 346 LEVTNLKVLQSVNLSNNFFTGRIPESVGT---MRSLESIDFSLNQLSGE----IPQSMSS 398
L+ + + + + E + LE++D S L+ E + +
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305
Query: 399 LKFLNHLNLSNNNLT 413
+K L +N+ N L+
Sbjct: 306 IKHLKFINMKYNYLS 320
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.91 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.88 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.88 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.86 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.85 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.83 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.82 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.81 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.81 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.79 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.74 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.73 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.73 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.71 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.7 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.7 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.7 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.7 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.7 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.69 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.69 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.69 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.68 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.68 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.67 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.66 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.66 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.64 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.64 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.63 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.6 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.57 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.55 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.55 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.53 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.53 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.52 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.51 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.49 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.48 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.47 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.47 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.46 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.46 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.43 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.43 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.41 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.36 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.32 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.32 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.25 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.24 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.22 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.19 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.02 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.98 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.96 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.75 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.71 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.67 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.52 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.5 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.43 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.25 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.15 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.14 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.49 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.4 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.0 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.72 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-48 Score=398.86 Aligned_cols=431 Identities=33% Similarity=0.486 Sum_probs=266.0
Q ss_pred CCCcccEEEccCCcCCCCCCccccCC-CcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC-ccCCCCC
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN-LTNAAQL 87 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~-l~~~~~L 87 (453)
.+++|++|++++|.+++..|..+.+. ++|++|++++|.+.+.+|..+ +.+++|++|++++|.+.+ .+.. +..+++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 45556666666665554555554443 556666666665555555554 555556666666655542 3322 4555556
Q ss_pred cEEEccCCccccccccc---cc-cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEE
Q 048417 88 EVLSLGSNSFSIALPLI---SS-YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMIL 163 (453)
Q Consensus 88 ~~L~l~~~~~~~~~~~~---~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 163 (453)
++|++++|.+.+..+.. ++ +|++|++++|.+.+..+..+.. ..+++|++|++++|.+++..|..+..+++|++|
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 66666555555433332 22 5555555555554332222211 014455555555555554555555555555555
Q ss_pred EcccCccCCCCCccccccccccEEEccCCccccc-cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT-IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 164 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
++++|.+.+..|..+..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRL 502 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH-hcCCCCCEEEccCCcc
Confidence 5555555555555555555555555555555432 2444555555555555555554444433 2455555555555555
Q ss_pred cccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch-hhhhhhhhc---------------------
Q 048417 243 YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI-QYQFLLYAS--------------------- 300 (453)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~-~~~~~~~~~--------------------- 300 (453)
.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|+.. .++......
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 5555555555555555555555555555555555555555555555432 111110000
Q ss_pred -----------------cchhhhhhhhh-----HHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEE
Q 048417 301 -----------------RAPLIATLLED-----AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVN 358 (453)
Q Consensus 301 -----------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 358 (453)
.+......... ....+.+.....+..+++|++|++++|++++.+|..++.++.|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 00000000000 00111222334456678999999999999999999999999999999
Q ss_pred cCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC-ccC
Q 048417 359 LSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCR 437 (453)
Q Consensus 359 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~ 437 (453)
+++|.+++.+|..++.+++|+.||+++|++++.+|+.+..++.|++|++++|+++|.+|...++.++....+.||+ +||
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCCCCC
Q 048417 438 APLSGNCSE 446 (453)
Q Consensus 438 ~~~~~~c~~ 446 (453)
.|+. .|+.
T Consensus 743 ~~l~-~C~~ 750 (768)
T 3rgz_A 743 YPLP-RCDP 750 (768)
T ss_dssp TTSC-CCCS
T ss_pred CCCc-CCCC
Confidence 9987 8864
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=381.23 Aligned_cols=429 Identities=27% Similarity=0.366 Sum_probs=306.4
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN 80 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~ 80 (453)
++.+|. +.++++|++|++++|.+++..+.++.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++ .+..
T Consensus 213 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCC
T ss_pred CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHH
Confidence 445555 889999999999999998888888999999999999999987766654 67888888888888874 5555
Q ss_pred ccCC-CCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhc
Q 048417 81 LTNA-AQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMN 156 (453)
Q Consensus 81 l~~~-~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 156 (453)
+... ++|++|++++|.+.+..+.. +++|++|++++|.+.+..+.. .+..+++|++|++++|.+++..|..+..
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~---~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD---TLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH---HHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH---HHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 5554 78888888888887655543 567888888888776433322 1335778888888888777667777776
Q ss_pred CC-cccEEEcccCccCCCCCccccc--cccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcc
Q 048417 157 YQ-NLMILDLSNNKFTGNLPISLGS--LISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRI 232 (453)
Q Consensus 157 l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 232 (453)
+. +|++|++++|.+.+..|..+.. +++|+.|++++|.+++.. ..+..+++|+.|++++|.+.+..+..+ ..+++|
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L 444 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKL 444 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTC
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCC
Confidence 65 7777777777776555555544 566777777777666433 556666667777777766655555443 356666
Q ss_pred eEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhH
Q 048417 233 VVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312 (453)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (453)
+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|..........+..+... .+ ...
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L-~L~ 522 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-IL-KLS 522 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EE-ECC
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EE-ECC
Confidence 6666666666666666666666666666666666666666666666666666666654422111111100000 00 000
Q ss_pred HHHhcCCcchhhhhcCcccEEecCCCcCCCcCCcc---------------------------------------------
Q 048417 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLE--------------------------------------------- 347 (453)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--------------------------------------------- 347 (453)
...+.+.....+..+++|++|++++|.+.+.+|..
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 00112233445667888889999888876555543
Q ss_pred -------------------------ccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCC
Q 048417 348 -------------------------VTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFL 402 (453)
Q Consensus 348 -------------------------~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 402 (453)
+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|+.+..+++|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 3345789999999999999999999999999999999999999999999999999
Q ss_pred CEEEccCCcccccCCCC-cccceeecccCCCCCccCCCC
Q 048417 403 NHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPL 440 (453)
Q Consensus 403 ~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~ 440 (453)
++|++++|++++.+|.. ..+++|+.+++++|+++|...
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999988866 889999999999999876533
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=357.51 Aligned_cols=427 Identities=21% Similarity=0.209 Sum_probs=259.6
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~ 83 (453)
.|..|.++++|++|+|++|.+++..+.+|.++++|++|++++|++.+..|..+ +.+++|++|++++|.++.. +..+.+
T Consensus 49 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~~~~~~~ 127 (606)
T 3t6q_A 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHN 127 (606)
T ss_dssp CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTTCCEEECTTSCCSCGGGSCCTT
T ss_pred ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-cccccccEeeccccCcccCCcchhcc
Confidence 46678888899999999988887778888889999999999988866666665 7888888888888888874 456778
Q ss_pred CCCCcEEEccCCcccccc-cc--ccccCcEEECcCCCCCCchhhhhhhhhcccCccc--EEeccCCCCC-----------
Q 048417 84 AAQLEVLSLGSNSFSIAL-PL--ISSYLIELDFSNNSISGSIFHFICYRANELNKWQ--ILYLSGNFLQ----------- 147 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~----------- 147 (453)
+++|++|++++|.+.... +. .+++|++|++++|.+....+..+. .+++|+ +|++++|.++
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS----SLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH----TTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh----hhcccceeEEecCCCccCccChhHhhhcc
Confidence 888888888888877632 21 256788888888877654333322 344444 4555555444
Q ss_pred ----------------------------------------------------------------CCCchhhhcCCcccEE
Q 048417 148 ----------------------------------------------------------------GELPDCWMNYQNLMIL 163 (453)
Q Consensus 148 ----------------------------------------------------------------~~~~~~l~~l~~L~~L 163 (453)
+..+..+..+++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 3333334445555555
Q ss_pred EcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 164 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
++++|.+. .+|..+..+++|++|++++|.+.+.. ..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus 284 ~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp ECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred eccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 55555555 44444555555555555555555443 34455555555555555554444443334555566666665555
Q ss_pred cccC--chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhh-hhccchhhhhhhhhHHHHhcCC
Q 048417 243 YNLL--PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL-YASRAPLIATLLEDAFVVMKGR 319 (453)
Q Consensus 243 ~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 319 (453)
.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++.++......... ..... .+.... .....+...
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~-l~~n~l~~~ 440 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLN-LSHSLLDIS 440 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEE-CTTCCCBTT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEE-CCCCccCCc
Confidence 4433 444555666666666666655555555666666666666655543221110 00000 000000 000011222
Q ss_pred cchhhhhcCcccEEecCCCcCCCc---CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 320 EAKYERTLNLVRIIDFSKNNFSGK---IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
....+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..|+.+
T Consensus 441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 233445566777777777766541 22446666777777777777776666667777777777777777776667777
Q ss_pred cCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCCCCC
Q 048417 397 SSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
..++.| +|++++|++++.+|.. ..+++|+.+++++|| +.|.|+
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-----~~c~c~ 564 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP-----LDCTCS 564 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC-----EECSGG
T ss_pred Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC-----ccccCC
Confidence 777777 7777777777655553 667777777777774 445554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=341.69 Aligned_cols=426 Identities=20% Similarity=0.185 Sum_probs=283.8
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~ 83 (453)
+|..+. +.+++|++++|.+++..+.+|+++++|++|++++|++.+..|..+ ..+++|++|++++|.++.. +..+.+
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhc-cCccccCeeeCCCCcccccChhhhcc
Confidence 454443 379999999999988888899999999999999999977667776 8999999999999999874 567889
Q ss_pred CCCCcEEEccCCccccccc---cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 84 AAQLEVLSLGSNSFSIALP---LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+++|++|++++|.+....+ ..+++|++|++++|.+.......+ ..+++|++|++++|.+++..+..+..+.+|
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT----CCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc----cCCcccCEEEcccCcccccChhhhhhhccc
Confidence 9999999999999987533 336799999999999886332222 248999999999999997667778888877
Q ss_pred c--EEEcccCccCCCCCc--------------------------------------------------------------
Q 048417 161 M--ILDLSNNKFTGNLPI-------------------------------------------------------------- 176 (453)
Q Consensus 161 ~--~L~l~~~~~~~~~~~-------------------------------------------------------------- 176 (453)
+ +|++++|.+.+..|.
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 7 777777766543332
Q ss_pred -------------cccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccc
Q 048417 177 -------------SLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243 (453)
Q Consensus 177 -------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 243 (453)
.|..+++|++|++++|.++.++..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcc
Confidence 234445555555555555555455555555555665555554432322 234555666666665554
Q ss_pred ccCc-hhhcCCCCccEEEccCCcCCCCc--ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCC-
Q 048417 244 NLLP-KELCDLAFLQIVDLADNNLSGEV--PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR- 319 (453)
Q Consensus 244 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (453)
...+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|+++++.............+. +..+... ...+...
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~-~n~l~~~~ 416 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLA-FTRLKVKD 416 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECT-TCCEECCT
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECC-CCcCCCcc
Confidence 3332 23555666666666666665333 445666666666666665543322211111110 0000000 0001111
Q ss_pred cchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCC---CCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 320 EAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGR---IPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|++.+..|..+
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 122355667777788777777766677777777888888888777642 22456777788888888888777777777
Q ss_pred cCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCC
Q 048417 397 SSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLS 441 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~ 441 (453)
..+++|++|++++|++++.+|.. ..++.| .+++++|.+++.+..
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 78888888888888877665543 667777 788888877766543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.86 Aligned_cols=404 Identities=19% Similarity=0.222 Sum_probs=332.5
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCC---------------------------------------------
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYS--------------------------------------------- 47 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~--------------------------------------------- 47 (453)
.+++.|+|+++.+.+..|.+++++++|++|++++|
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46888888888887778888888888888888777
Q ss_pred ---------------------------------cccccchhhHhhcCCCeEEEEccCCcccC------------------
Q 048417 48 ---------------------------------GIIGTIPNIFWSSASQIYVLDLSFNQIHG------------------ 76 (453)
Q Consensus 48 ---------------------------------~~~~~~~~~~~~~l~~L~~L~ls~~~~~~------------------ 76 (453)
++++ +|..+ +.+++|++|++++|.+++
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhccc
Confidence 3334 67765 889999999999999998
Q ss_pred CCcCcc--CCCCCcEEEccCCccccccccc---cccCcEEECcCCC-CCC-chhhhhhh--hhcccCcccEEeccCCCCC
Q 048417 77 QIPNLT--NAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNS-ISG-SIFHFICY--RANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 77 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-l~~-~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 147 (453)
.+..+. ++++|++|++++|.+.+..+.. +++|++|++++|. +++ ..+..+.. .+..+++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 888888 9999999999999988876654 5799999999998 875 44444432 1233499999999999999
Q ss_pred CCCch--hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCC-CCEEeCCCCcccccCchH
Q 048417 148 GELPD--CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA-LMTLDVGENELVENIPTW 224 (453)
Q Consensus 148 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 224 (453)
.+|. .+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.++.++..+..+++ |+.|++++|.+. .+|..
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 8888 89999999999999999997788 889999999999999999988788999999 999999999987 56654
Q ss_pred HHh-ccCcceEEEecCCcccccCchhhc-------CCCCccEEEccCCcCCCCcccc-cccccccceeccccCcchhhhh
Q 048417 225 IRE-RFSRIVVLILRSNKFYNLLPKELC-------DLAFLQIVDLADNNLSGEVPRC-IHNLRAMVTMNSHAGKAIQYQF 295 (453)
Q Consensus 225 ~~~-~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~i~~~~~~~~~~ 295 (453)
+.. .+++|+.|++++|.+.+..|..+. .+++|++|++++|.+. .+|.. +..+++|+.|+++++.+..++.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 321 234899999999999988888787 7789999999999999 56654 5568999999999988664433
Q ss_pred hhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCcccc--CCCCCcEEEcCCccCCCCCCcccc
Q 048417 296 LLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT--NLKVLQSVNLSNNFFTGRIPESVG 373 (453)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~ 373 (453)
....... .....+++|++|++++|.++ .+|..+. .+++|+.|++++|++.+ +|..+.
T Consensus 475 ~~~~~~~-------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 475 NSLKDEN-------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp SSSEETT-------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred HHhcccc-------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence 2111000 00123458999999999998 7777776 89999999999999995 899999
Q ss_pred CCCCCCEEEc------CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccCCCCCCCCC
Q 048417 374 TMRSLESIDF------SLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 374 ~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
.+++|+.|++ ++|++.+.+|..+..+++|++|++++|++. .+|.. ..++|+.+++++|++...+....|+
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~-~~~~L~~L~Ls~N~l~~~~~~~~~~ 609 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK-ITPNISVLDIKDNPNISIDLSYVCP 609 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSC-CCTTCCEEECCSCTTCEEECTTTHH
T ss_pred cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHh-HhCcCCEEECcCCCCccccHHhcch
Confidence 9999999999 567788899999999999999999999995 66664 3389999999999977666555554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=337.14 Aligned_cols=417 Identities=17% Similarity=0.117 Sum_probs=253.4
Q ss_pred CCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccCC
Q 048417 6 NDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTNA 84 (453)
Q Consensus 6 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~~ 84 (453)
+..|.++++|++|++++|.+++..+.+|.++++|++|++++|++++..|..+ +.+++|++|++++|.++..+ ..+.++
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l 127 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETKLASLESFPIGQL 127 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccCCEEEccCCccccccccccCCC
Confidence 3467777777777777777766666777777777777777777755556555 67777777777777776544 456677
Q ss_pred CCCcEEEccCCcccc-cccc---ccccCcEEECcCCCCCCchhhhhhh-----------------------hhcccCccc
Q 048417 85 AQLEVLSLGSNSFSI-ALPL---ISSYLIELDFSNNSISGSIFHFICY-----------------------RANELNKWQ 137 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~-~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~-----------------------~~~~~~~L~ 137 (453)
.+|++|++++|.+.. ..+. .+++|++|++++|.+....+..+.. ......+|+
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 777777777777664 2222 2456777777776665432221110 000111445
Q ss_pred EEeccCCCCC----------------------------------------------------------CCCchhhhcCCc
Q 048417 138 ILYLSGNFLQ----------------------------------------------------------GELPDCWMNYQN 159 (453)
Q Consensus 138 ~L~l~~~~~~----------------------------------------------------------~~~~~~l~~l~~ 159 (453)
+|++++|.+. +..|. +..+++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCC
Confidence 5555444331 01111 334455
Q ss_pred ccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecC
Q 048417 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRS 239 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 239 (453)
|++++++++.+. ..| .+..+++|+.|++++|.+..++ .+ .+++|+.|++++|......+ +..+++|++|++++
T Consensus 287 L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 287 VSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSR 359 (606)
T ss_dssp CSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC---CCCCTTCCEEECCS
T ss_pred CCEEEecCccch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchh---hccCCCCCEEECcC
Confidence 666666666665 333 4555666666666666654333 33 45555555555553222121 12344555555555
Q ss_pred Cccccc--CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhh-hhhccchhhhhhhhhHHHHh
Q 048417 240 NKFYNL--LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFL-LYASRAPLIATLLEDAFVVM 316 (453)
Q Consensus 240 ~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 316 (453)
|.+.+. .+..+..+++|++|++++|.+. .+|..+..+++|+.|++.++........ ....... +.... ......
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~-l~~n~l 436 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLD-ISYTNT 436 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT-CCEEE-CTTSCC
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhcccc-CCEEE-CcCCCC
Confidence 544433 1344444455555555555444 3334444445555555444443322210 0000000 00000 000001
Q ss_pred cCCcchhhhhcCcccEEecCCCcCCC-cCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCcc
Q 048417 317 KGREAKYERTLNLVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS 395 (453)
Q Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 395 (453)
.......+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..|..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 11223345678899999999999986 47888999999999999999999888888999999999999999999888999
Q ss_pred ccCCCCCCEEEccCCcccccCCCCcccc-eeecccCCCCC
Q 048417 396 MSSLKFLNHLNLSNNNLTGKIPSSTQLQ-SFDASSFSGND 434 (453)
Q Consensus 396 l~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~l~l~~n~ 434 (453)
+..+++|++|++++|+++..++.+..++ +|+.+++++||
T Consensus 517 ~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred ccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 9999999999999999996666667776 59999999996
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=339.22 Aligned_cols=423 Identities=20% Similarity=0.163 Sum_probs=209.8
Q ss_pred CCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccCCCC
Q 048417 8 NWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTNAAQ 86 (453)
Q Consensus 8 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~~~~ 86 (453)
.+.++++|++|++++|.+++..+.+|+++++|++|++++|.+ ..+|...++.+++|++|++++|.++..+ ..+.++++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 456666666666666666655556666666666666666666 3344333355666666666666655443 33555555
Q ss_pred CcEEEccCCcccccccc---ccccCcEEECcCCCCCCchhhhhhhhhccc------------------------------
Q 048417 87 LEVLSLGSNSFSIALPL---ISSYLIELDFSNNSISGSIFHFICYRANEL------------------------------ 133 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~------------------------------ 133 (453)
|++|++++|.+....+. .+++|++|++++|.+.......+.. ..+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI--FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG--GTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc--cccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 66666655555443322 1334444444444443322211110 011
Q ss_pred ---------------------CcccEEeccCCCCCCCCchhhhcCCc--ccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 134 ---------------------NKWQILYLSGNFLQGELPDCWMNYQN--LMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 134 ---------------------~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
++|++|++++|.+++..+..+..+.. |++|++++|.+.+..+..|..+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 22333333333333323333333332 6666666666555555555556666666666
Q ss_pred CCcccccc-ccc---------------------------------cccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 191 KNNLCGTI-HSL---------------------------------ENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 191 ~~~~~~~~-~~~---------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
+|.+.+.. ..+ ..+++|+.|++++|.+.+..+. .+..+++|++|+
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ 359 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLS 359 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEE
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEE
Confidence 65554332 223 3344444444444444332221 122333333333
Q ss_pred e----------------------------cCCcccccCchhhcCCCCccEEEccCCcCCCCcc-cccccccccceecccc
Q 048417 237 L----------------------------RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTMNSHA 287 (453)
Q Consensus 237 l----------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~i~~ 287 (453)
+ ++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|+.+++++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 3 3333333334445555555555555555544333 4455555555555555
Q ss_pred CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCC
Q 048417 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGR 367 (453)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 367 (453)
++........+...+....-................+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 55332222111111100000000000000012233455667777777777777755566666777777777777766532
Q ss_pred C--------CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCC
Q 048417 368 I--------PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGND 434 (453)
Q Consensus 368 ~--------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~ 434 (453)
. +..+..+++|++|++++|++....+..|..+++|++|++++|++++.++.. ..+++|+.+++++|.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 1 122556666777777777666433445666667777777766666544443 455666666666654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=335.23 Aligned_cols=258 Identities=19% Similarity=0.187 Sum_probs=164.8
Q ss_pred ccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCC
Q 048417 176 ISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAF 255 (453)
Q Consensus 176 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 255 (453)
..+..+++|+.|++++|.+..++..+..+ +|+.|++++|.+. .++. ..+++|+.+++.+|.+....+. ..+++
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 348 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPS 348 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTT
T ss_pred hhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCC
Confidence 33444556666666666665555545555 6666666666554 2332 1344555555555544333222 34555
Q ss_pred ccEEEccCCcCCCCc--ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCC-cchhhhhcCcccE
Q 048417 256 LQIVDLADNNLSGEV--PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR-EAKYERTLNLVRI 332 (453)
Q Consensus 256 L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~ 332 (453)
|++|++++|.+.+.. +..+..+++|+.|+++++........ ...... +..+.... ..+... ....+..+++|++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~-L~~L~l~~-n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ-LEHLDFQH-SNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTT-CCEEECTT-SEEESCTTSCTTTTCTTCCE
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCC-CCEEEccC-CccccccchhhhhcCCCCCE
Confidence 555555555554222 34455555555555555543332211 000000 00000000 000111 1124567889999
Q ss_pred EecCCCcCCCcCCccccCCCCCcEEEcCCccCC-CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc
Q 048417 333 IDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT-GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 333 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++.+..|..+..+++|++|++++|+
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 999999998888888999999999999999987 4688889999999999999999998889999999999999999999
Q ss_pred ccccCCCC-cccceeecccCCCCCccCCCCCCCCCCCc
Q 048417 412 LTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEHV 448 (453)
Q Consensus 412 l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~~ 448 (453)
+++.++.. ..+++|+.+++++|+ +.|.|+...
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~-----~~~~~~~~~ 538 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNP-----WDCSCPRID 538 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC-----BCCCTTTTH
T ss_pred CCCCCHHHhhcccCCcEEEecCCc-----ccCCCcchH
Confidence 99877654 789999999999995 456666543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=333.44 Aligned_cols=436 Identities=20% Similarity=0.198 Sum_probs=279.4
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~ 83 (453)
+|..+. +++++|+|++|.+++..+.+|.++++|++|++++|.+++..|..+ +.+++|++|++++|.++..+. .+.+
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH-hcccCcCEEECCCCccCccChhhhcc
Confidence 555443 689999999999988877889999999999999999977667665 889999999999999998776 5889
Q ss_pred CCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhh--cCC
Q 048417 84 AAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM--NYQ 158 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~ 158 (453)
+++|++|++++|.+....+.. +++|++|++++|.+....+.. +..+++|++|++++|.+++..+..+. .++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh----hcccccCCEEEccCCcccccCHHHhhccccc
Confidence 999999999999998766443 679999999999988654433 34699999999999999866665544 457
Q ss_pred cccEEEcccCccCCCCCcccccc---------------------------ccccEEEccCCcccccc-ccccccC--CCC
Q 048417 159 NLMILDLSNNKFTGNLPISLGSL---------------------------ISLQSLHLRKNNLCGTI-HSLENCT--ALM 208 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~-~~~~~~~--~L~ 208 (453)
+|++|++++|.+.+..|..+..+ ++|+.|++++|.+.+.. ..+..++ +|+
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 89999999888876655544433 23444444445444332 2333332 255
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCch---------------------------------hhcCCCC
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPK---------------------------------ELCDLAF 255 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------------------------~~~~~~~ 255 (453)
.|++++|.+.+..+.. +..+++|++|++++|.+.+..+. .+..+++
T Consensus 252 ~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp EEECTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred EEECCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 5555555554333222 23455555555555554433332 4455666
Q ss_pred ccEEEccCCcCCCCcccccccccccceeccccCcc--hhhhhhhhhccc-hhhhhhhhhHHHHhcCCcchhhhhcCcccE
Q 048417 256 LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA--IQYQFLLYASRA-PLIATLLEDAFVVMKGREAKYERTLNLVRI 332 (453)
Q Consensus 256 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (453)
|++|++++|.+.+..+..+..+++|+.++++++.. .......+.... ..+... ......+.......+..+++|++
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL-NLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEE-ECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceE-ECCCCCCCeEChhhhhCCCCCCE
Confidence 77777777777766666677777777777776542 111100000000 000000 00000011111222333444444
Q ss_pred EecCCCcC-------------------------CCcCCccccCCCCCcEEEcCCccCC--CCCCccccCCCCCCEEEcCC
Q 048417 333 IDFSKNNF-------------------------SGKIPLEVTNLKVLQSVNLSNNFFT--GRIPESVGTMRSLESIDFSL 385 (453)
Q Consensus 333 L~l~~~~l-------------------------~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~ 385 (453)
|++++|.+ .+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 55444444 4334444444555555555555543 34566677788888888888
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcccccCC---------CCcccceeecccCCCCCccCCCCC--CCCCCCcc
Q 048417 386 NQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP---------SSTQLQSFDASSFSGNDLCRAPLS--GNCSEHVS 449 (453)
Q Consensus 386 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---------~~~~l~~L~~l~l~~n~l~~~~~~--~~c~~~~~ 449 (453)
|++.+..+..+..+++|++|++++|++++..+ ....+++|+.+++++|.+...|.. ..|+.++.
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 88886666778888888888888888875321 146678888888888888777653 34554443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=336.87 Aligned_cols=403 Identities=17% Similarity=0.187 Sum_probs=326.8
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEc-CCCccccc---------------------------------------
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDL-SYSGIIGT--------------------------------------- 52 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~--------------------------------------- 52 (453)
.+++.|+|+++.+.+..|..++++++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888999999888888888899999999999 66643222
Q ss_pred -------------------------------------chhhHhhcCCCeEEEEccCCcccC------------------C
Q 048417 53 -------------------------------------IPNIFWSSASQIYVLDLSFNQIHG------------------Q 77 (453)
Q Consensus 53 -------------------------------------~~~~~~~~l~~L~~L~ls~~~~~~------------------~ 77 (453)
+|..+ ..+++|++|++++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 66665 889999999999999998 7
Q ss_pred CcCcc--CCCCCcEEEccCCccccccccc---cccCcEEECcCCC-CCC-chhhhhhh---hhcccCcccEEeccCCCCC
Q 048417 78 IPNLT--NAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNS-ISG-SIFHFICY---RANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 78 ~~~l~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-l~~-~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 147 (453)
+..+. ++++|++|++++|.+.+..+.. +++|++|++++|. +++ ..+..+.. .+..+++|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 78877 9999999999999988776654 5799999999998 775 44443332 2345669999999999999
Q ss_pred CCCch--hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCC-CCEEeCCCCcccccCchH
Q 048417 148 GELPD--CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA-LMTLDVGENELVENIPTW 224 (453)
Q Consensus 148 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 224 (453)
.+|. .+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+..++..+..+++ |+.|++++|.+. .+|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 8888 8999999999999999999 777 889999999999999999977778889998 999999999987 56643
Q ss_pred HHhcc--CcceEEEecCCcccccCchh---hc--CCCCccEEEccCCcCCCCccccc-ccccccceeccccCcchhhhhh
Q 048417 225 IRERF--SRIVVLILRSNKFYNLLPKE---LC--DLAFLQIVDLADNNLSGEVPRCI-HNLRAMVTMNSHAGKAIQYQFL 296 (453)
Q Consensus 225 ~~~~~--~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~i~~~~~~~~~~~ 296 (453)
+. .. ++|+.|++++|.+.+..|.. +. .+++|+.|++++|.+. .+|..+ ..+++|+.|+++++.+..++..
T Consensus 638 ~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 638 FN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 32 33 35999999999997765432 22 3458999999999999 677655 4889999999999876644433
Q ss_pred hhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCcccc--CCCCCcEEEcCCccCCCCCCccccC
Q 048417 297 LYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT--NLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
...... .....+++|++|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..
T Consensus 716 ~~~~~~-------------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~ 774 (876)
T 4ecn_A 716 SLKPKD-------------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN 774 (876)
T ss_dssp SSSCTT-------------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred Hhcccc-------------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc
Confidence 221000 01224568999999999998 7787776 89999999999999995 8888999
Q ss_pred CCCCCEEEcCC------CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccCCCCCCCCC
Q 048417 375 MRSLESIDFSL------NQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 375 l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
+++|+.|++++ |.+.+.+|..+..+++|++|++++|++ +.+|.. ..++|+.+++++|++...+....|+
T Consensus 775 L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCEEECGGGHH
T ss_pred CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCccChHHccc
Confidence 99999999976 778889999999999999999999999 466765 3379999999999987665555443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=335.69 Aligned_cols=350 Identities=16% Similarity=0.177 Sum_probs=291.6
Q ss_pred CCccccCCCcccEEEcCCCccccc-----------------chhhHhh--cCCCeEEEEccCCcccC-CCcCccCCCCCc
Q 048417 29 FPSWLYSQKHLNYLDLSYSGIIGT-----------------IPNIFWS--SASQIYVLDLSFNQIHG-QIPNLTNAAQLE 88 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~ 88 (453)
.|..++++++|++|++++|.+++. +|..+ . .+++|++|++++|.+.+ .+..+.++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 567799999999999999999774 88877 5 89999999999998876 666789999999
Q ss_pred EEEccCCc-ccc-ccccc---------cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 89 VLSLGSNS-FSI-ALPLI---------SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 89 ~L~l~~~~-~~~-~~~~~---------~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
+|++++|. +++ ..+.. +++|++|++++|.+. ..+. ...+..+++|++|++++|.+++.+| .+..+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV--ETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC--HHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc--hhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 99999998 776 44432 289999999999988 3332 0034579999999999999997888 78999
Q ss_pred CcccEEEcccCccCCCCCcccccccc-ccEEEccCCccccccccccccC--CCCEEeCCCCcccccCchHHHh------c
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLIS-LQSLHLRKNNLCGTIHSLENCT--ALMTLDVGENELVENIPTWIRE------R 228 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~------~ 228 (453)
++|++|++++|.+. .+|..+..+++ |+.|++++|.++.++..+...+ +|+.|++++|.+.+..|..+.. .
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 99999999999999 78888999999 9999999999997776666544 8999999999998766654320 4
Q ss_pred cCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc--------ccccceeccccCcchhhhhhhhhc
Q 048417 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN--------LRAMVTMNSHAGKAIQYQFLLYAS 300 (453)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~l~i~~~~~~~~~~~~~~~ 300 (453)
+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..+.. +++|+.|+++++.+..++.....
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~- 509 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA- 509 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST-
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh-
Confidence 568999999999998655556777999999999999998 66654433 23999999999876543322110
Q ss_pred cchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEc------CCccCCCCCCccccC
Q 048417 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNL------SNNFFTGRIPESVGT 374 (453)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~l~~ 374 (453)
..+++|+.|++++|.+++ +|..+..+++|+.|++ ++|.+.+.+|..+..
T Consensus 510 ------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 510 ------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp ------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred ------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 257889999999999996 8888999999999999 567788889999999
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 375 MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
+++|++|++++|++. .+|..+. ++|++|++++|++..
T Consensus 565 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 565 CPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 999999999999995 7787765 899999999999884
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=332.13 Aligned_cols=419 Identities=19% Similarity=0.101 Sum_probs=320.9
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~ 83 (453)
+|..+. +++++|+|++|.+++..+.+|.++++|++|++++|.+++..|..+ ..+++|++|++++|.++.. +..+.+
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh-hchhhcCEeECCCCcccccChhhcCC
Confidence 455443 789999999999988888899999999999999999966656665 8999999999999999886 667899
Q ss_pred CCCCcEEEccCCcccccccc---ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 84 AAQLEVLSLGSNSFSIALPL---ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+++|++|++++|.+....+. .+++|++|++++|.+.... ++..++.+++|++|++++|.+++..+..+..+.+|
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 99999999999999876533 3679999999999987522 23345579999999999999886666555555444
Q ss_pred c----EEEcccCccCCCCCccc----------------------------------------------------------
Q 048417 161 M----ILDLSNNKFTGNLPISL---------------------------------------------------------- 178 (453)
Q Consensus 161 ~----~L~l~~~~~~~~~~~~l---------------------------------------------------------- 178 (453)
+ ++++++|.+....+..+
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred ccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 3 56666665553332222
Q ss_pred ----------------------cccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 179 ----------------------GSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 179 ----------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
..+++|+.|+++++.+..++ .+..+++|+.|++++|.+ +.++.. .+++|++|+
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~ 334 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLT 334 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEE
T ss_pred hccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC---CCCccceee
Confidence 23344555555555544333 566778999999999999 656643 789999999
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCC--cccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHH
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE--VPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFV 314 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (453)
+++|...... .+..+++|++|++++|.+.+. .+..+..+++|+.|+++++......... ..... +...... ..
T Consensus 335 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~-L~~L~l~-~n 409 (606)
T 3vq2_A 335 LTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-MGLEE-LQHLDFQ-HS 409 (606)
T ss_dssp EESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC-TTCTT-CCEEECT-TS
T ss_pred ccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc-cCCCC-CCeeECC-CC
Confidence 9999654433 567899999999999998854 3788999999999999999865544111 11110 1000000 00
Q ss_pred HhcCCcc-hhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC-CCCccccCCCCCCEEEcCCCcCCCCC
Q 048417 315 VMKGREA-KYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG-RIPESVGTMRSLESIDFSLNQLSGEI 392 (453)
Q Consensus 315 ~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~ 392 (453)
.+..... ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..++.+++|++|++++|++.+..
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence 1111122 456778999999999999988888889999999999999999986 37888999999999999999999888
Q ss_pred CccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCCccCCC
Q 048417 393 PQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 393 ~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~l~~~~ 439 (453)
|..+..+++|++|++++|++++.+|. ...+++|+.+++++|.++..|
T Consensus 490 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 89999999999999999999987554 488999999999999865443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=334.98 Aligned_cols=370 Identities=14% Similarity=0.127 Sum_probs=297.2
Q ss_pred CCccccCCCcccEEEcCCCcccc-----------------cchhhH-hhcCCCeEEEEccCCcccC-CCcCccCCCCCcE
Q 048417 29 FPSWLYSQKHLNYLDLSYSGIIG-----------------TIPNIF-WSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEV 89 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~ 89 (453)
+|..|+++++|++|+|++|.+++ .+|..+ |..+++|++|++++|.+.+ .+..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56789999999999999999977 388876 3489999999999998765 6667899999999
Q ss_pred EEccCCc-ccc-ccccc----------cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 90 LSLGSNS-FSI-ALPLI----------SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 90 L~l~~~~-~~~-~~~~~----------~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
|++++|. +++ ..+.. +++|++|++++|.+. ..+. ...+..+++|++|++++|.++ .+| .+..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~--~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA--SASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC--HHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC--hhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 9999998 776 33322 348999999999998 3332 014457999999999999999 788 78999
Q ss_pred CcccEEEcccCccCCCCCcccccccc-ccEEEccCCccccccccccccC--CCCEEeCCCCcccccCchHH--H--hccC
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLIS-LQSLHLRKNNLCGTIHSLENCT--ALMTLDVGENELVENIPTWI--R--ERFS 230 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~--~--~~~~ 230 (453)
++|++|++++|.+. .+|..+..+++ |+.|++++|.+..++..+...+ +|+.|++++|.+.+..+... . ...+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999999 78888999999 9999999999997776666554 49999999999977544221 0 1235
Q ss_pred cceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc--------ccccceeccccCcchhhhhhhhhccc
Q 048417 231 RIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN--------LRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
+|+.|++++|.+.......+..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.+..++....
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~---- 748 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR---- 748 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS----
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhh----
Confidence 8999999999998644445568999999999999998 77765443 3499999999987653332211
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCC------ccCCCCCCccccCCC
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSN------NFFTGRIPESVGTMR 376 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~l~~l~ 376 (453)
...+++|+.|++++|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..++
T Consensus 749 ---------------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 749 ---------------------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp ---------------------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred ---------------------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 0257889999999999995 788888999999999976 778888999999999
Q ss_pred CCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCC
Q 048417 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
+|++|++++|++ +.+|..+. ++|+.|++++|++....+. ......+..+.+.+|+
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 999999999999 58888765 6999999999999854332 2344455566666664
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=338.27 Aligned_cols=252 Identities=17% Similarity=0.166 Sum_probs=132.0
Q ss_pred ccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 182 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
++|+.|++++|.+.+.. ..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+....+..+..+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 35666666666655543 44566677777777777665543332 34567777777777777666666777777777777
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhh------hhh-----ccchhhhh--hhhhHHHHhcC-Ccchhhhh
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFL------LYA-----SRAPLIAT--LLEDAFVVMKG-REAKYERT 326 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~------~~~-----~~~~~~~~--~~~~~~~~~~~-~~~~~~~~ 326 (453)
+++|.+.+..+..+..+++|+.|+++++....+... ... ..+..... ........+.. .....+..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 777777655556677777777777777664432210 000 00000000 00000000000 01112335
Q ss_pred cCcccEEecCCCcCCCcCCc-cccCCCCCcEEEcCCccCCC-----CCCccccCCCCCCEEEcCCCcCCCCCCccccCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPL-EVTNLKVLQSVNLSNNFFTG-----RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK 400 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 400 (453)
+++|++|++++|++++..+. .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..+..++
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 67777777777777643222 23345556666666555541 2223345555555555555555555555555555
Q ss_pred CCCEEEccCCcccccCCCCcccceeecccCCCCCc
Q 048417 401 FLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435 (453)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l 435 (453)
+|++|++++|++++.++..-. ++|+.+++++|.+
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred hhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 555555555555543333211 4444444444443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=320.87 Aligned_cols=394 Identities=19% Similarity=0.148 Sum_probs=231.7
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcC-ccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~-l~~ 83 (453)
+|+.+. ++|++|++++|.+++..+.+|.++++|++|++++|++++..+..+ ..+++|++|++++|.+++.++. +.+
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF-YSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc-cccccCCEEECCCCccCccCHHHhcc
Confidence 454432 578888888888777667777888888888888888755544554 7778888888888887776654 777
Q ss_pred CCCCcEEEccCCcccccc----ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCc
Q 048417 84 AAQLEVLSLGSNSFSIAL----PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQN 159 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 159 (453)
+++|++|++++|.+.... ...+++|++|++++|.+.+..+ ...+..+++|++|++++|.+++..|..+..+++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR---RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC---HhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 778888888888776421 1235678888888776332211 123345777888888887777666777777777
Q ss_pred ccEEEcccCccCCCCCcc-ccccccccEEEccCCcccccc----ccccccCCCCEEeCCCCcccccCchHH---------
Q 048417 160 LMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLCGTI----HSLENCTALMTLDVGENELVENIPTWI--------- 225 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~--------- 225 (453)
|++|+++++.+. ..|.. +..+++|+.|++++|.+.+.. .....+++++.|+++++.+.+..+..+
T Consensus 174 L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 174 IHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred CceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 777777776655 22332 234566777777666665431 112233444444444443322111111
Q ss_pred -----------------------------------------------------HhccCcceEEEecCCcccccCchhh-c
Q 048417 226 -----------------------------------------------------RERFSRIVVLILRSNKFYNLLPKEL-C 251 (453)
Q Consensus 226 -----------------------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~-~ 251 (453)
+...++++.+++++|.+.. +|..+ .
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~ 331 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQ 331 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHH
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHh
Confidence 1112344444444444432 23222 3
Q ss_pred CCCCccEEEccCCcCCCCcc---cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcC
Q 048417 252 DLAFLQIVDLADNNLSGEVP---RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328 (453)
Q Consensus 252 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (453)
.+++|++|++++|.+.+.+| ..+..+++|+.|+++++....+... ...+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~~~~~l~ 387 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT------------------------GEILLTLK 387 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH------------------------HHHGGGCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc------------------------hhhhhcCC
Confidence 45556666666665554332 2245555556665555544332210 01123455
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc------------------ccCCCCCCEEEcCCCcCCC
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES------------------VGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~------------------l~~l~~L~~L~l~~n~l~~ 390 (453)
+|++|++++|.++ .+|..+..+++|+.|++++|.+. .++.. ...+++|++|++++|++.
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK- 464 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-
Confidence 6666666666665 44555555555666666665554 22221 135677777777777776
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCC
Q 048417 391 EIPQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 391 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
.+|. ...+++|++|++++|++++.++. ...+++|+.+++++|+
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 5554 34577777777777777766665 3677777777777775
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=317.40 Aligned_cols=390 Identities=19% Similarity=0.185 Sum_probs=282.9
Q ss_pred ccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccC
Q 048417 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTN 83 (453)
Q Consensus 4 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~ 83 (453)
.+|+.+. ++|++|++++|.+++..+.+|.++++|++|++++|++++..|..+ ..+++|++|++++|+++..+.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCCEEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCceeecCcc--c
Confidence 3666655 889999999999988777889999999999999999966666666 8899999999999999876555 7
Q ss_pred CCCCcEEEccCCccccc-ccc---ccccCcEEECcCCCCCCchhhhhhhhhcccCcc--cEEeccCCCC--CCCCchhhh
Q 048417 84 AAQLEVLSLGSNSFSIA-LPL---ISSYLIELDFSNNSISGSIFHFICYRANELNKW--QILYLSGNFL--QGELPDCWM 155 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~-~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~ 155 (453)
+++|++|++++|.+... .+. .+++|++|++++|.+... .+..+++| ++|++++|.+ .+..|..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccccccccc
Confidence 88999999999998863 222 367899999999988752 23357777 9999999988 556666555
Q ss_pred cC--------------------------CcccEEEcccCc-------cCCCCCccccccccccEEEccCCcccccc-c--
Q 048417 156 NY--------------------------QNLMILDLSNNK-------FTGNLPISLGSLISLQSLHLRKNNLCGTI-H-- 199 (453)
Q Consensus 156 ~l--------------------------~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~-- 199 (453)
.+ ++|+.+++++|. +.+..+ .+..+++|+.|+++++.+.+.. .
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHH
Confidence 53 344444444433 221221 3344455555555554443211 0
Q ss_pred -cccccCCCCEEeCCCCcccccCchHHH----hccCcceEEEecCCcc--------------------------cccCch
Q 048417 200 -SLENCTALMTLDVGENELVENIPTWIR----ERFSRIVVLILRSNKF--------------------------YNLLPK 248 (453)
Q Consensus 200 -~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~--------------------------~~~~~~ 248 (453)
.....++|++|++++|.+.+..|..++ ..++.|+.+++.+|.+ ....
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 318 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-- 318 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--
Confidence 001134777888877777655554431 2344444444444433 2211
Q ss_pred hhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcC
Q 048417 249 ELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328 (453)
Q Consensus 249 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (453)
....+++|++|++++|.+.+..|..+..+++|+.|+++++.+..+... ...+..++
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~------------------------~~~~~~l~ 374 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI------------------------AEMTTQMK 374 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH------------------------HHHHTTCT
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc------------------------hHHHhhCC
Confidence 015678899999999999887888899999999999998876543221 12235688
Q ss_pred cccEEecCCCcCCCcCCc-cccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPL-EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
+|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.++..+. ++|+.|++++|++. .+|..+..+++|++|++
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence 999999999999864554 478889999999999999877666554 79999999999999 78887779999999999
Q ss_pred cCCcccccCCC-CcccceeecccCCCCCc
Q 048417 408 SNNNLTGKIPS-STQLQSFDASSFSGNDL 435 (453)
Q Consensus 408 ~~n~l~~~~~~-~~~l~~L~~l~l~~n~l 435 (453)
++|++++..+. ...+++|+.+++++|++
T Consensus 452 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 99999965444 57899999999999953
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=316.84 Aligned_cols=428 Identities=19% Similarity=0.161 Sum_probs=320.7
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~ 83 (453)
+|..+ .+++++|++++|.+++..+.+|.++++|++|++++|++.+..+.. +..+++|++|++++|.++..+ ..+.+
T Consensus 22 ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp CCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 45433 357999999999998877888999999999999999995544444 488999999999999998755 56888
Q ss_pred CCCCcEEEccCCccccccc---cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 84 AAQLEVLSLGSNSFSIALP---LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+.+|++|++++|.+..... ..+++|++|++++|.+.... ++..+..+++|++|++++|.+++..+..+..+.+|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999998886544 34679999999999887521 22334569999999999999987667778888888
Q ss_pred ----cEEEcccCccCCCCCccccccccccEEEccCCcc------------------------------------------
Q 048417 161 ----MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL------------------------------------------ 194 (453)
Q Consensus 161 ----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------------------------------------------ 194 (453)
+++++++|.+....+..+... +|+.|++++|..
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 889999999887666666544 788887776521
Q ss_pred ----------------cc-ccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCcc
Q 048417 195 ----------------CG-TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQ 257 (453)
Q Consensus 195 ----------------~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 257 (453)
.+ .+..+..+++|+.|+++++.+.. ++..+. .+ +|++|++.+|.+.. +|. ..+++|+
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~-~~-~L~~L~l~~n~~~~-l~~--~~l~~L~ 328 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSY-NF-GWQHLELVNCKFGQ-FPT--LKLKSLK 328 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCS-CC-CCSEEEEESCBCSS-CCB--CBCSSCC
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhc-cC-CccEEeeccCcccc-cCc--ccccccC
Confidence 11 11345667888888888888753 555443 44 88889998888863 333 4678899
Q ss_pred EEEccCCcCCCCcccccccccccceeccccCcchhhh--hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEec
Q 048417 258 IVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ--FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335 (453)
Q Consensus 258 ~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 335 (453)
+|++++|.+.+..+. ..+++|+.|+++++...... .......+. +..+... ...+... ...+..+++|++|++
T Consensus 329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-L~~L~l~-~n~l~~~-~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLS-FNGVITM-SSNFLGLEQLEHLDF 403 (570)
T ss_dssp EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSC-CCEEECC-SCSEEEE-EEEEETCTTCCEEEC
T ss_pred EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCc-cCEEECC-CCccccc-cccccccCCCCEEEc
Confidence 999999888755554 78899999999998765432 111111100 0000000 0000111 112567889999999
Q ss_pred CCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC-CCCCccccCCCCCCEEEccCCccc
Q 048417 336 SKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS-GEIPQSMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 336 ~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~ 413 (453)
++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|+++
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 9999876555 46788999999999999999888888999999999999999987 468899999999999999999999
Q ss_pred ccCCC-CcccceeecccCCCCCccCCCCCC--CCCCCccC
Q 048417 414 GKIPS-STQLQSFDASSFSGNDLCRAPLSG--NCSEHVSI 450 (453)
Q Consensus 414 ~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~--~c~~~~~~ 450 (453)
+..|. ...+++|+.+++++|.+++.+... .|+.++.+
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 87564 488999999999999998887643 55655543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=304.65 Aligned_cols=362 Identities=18% Similarity=0.171 Sum_probs=215.6
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEE
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLS 91 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~ 91 (453)
++|++|+|++|.+++..+..|.++++|++|++++|.+.+.++...+..+++|++|++++|.++.. +..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34555555555554444445555555555555555554344333334555555555555555442 33444445555555
Q ss_pred ccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchh-hhcCCcccEEEcccCcc
Q 048417 92 LGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC-WMNYQNLMILDLSNNKF 170 (453)
Q Consensus 92 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 170 (453)
+++|. +.+..+.. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus 110 L~~n~---------------------l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 110 LTQCN---------------------LDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CTTSC---------------------CBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCCC---------------------CCccccCc--ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 55554 43211111 11334666666666666666554543 56666677777777666
Q ss_pred CCCCCcccccc--ccccEEEccCCccccccc---------cccccCCCCEEeCCCCcccccCchHHHhc--cCcceEEEe
Q 048417 171 TGNLPISLGSL--ISLQSLHLRKNNLCGTIH---------SLENCTALMTLDVGENELVENIPTWIRER--FSRIVVLIL 237 (453)
Q Consensus 171 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l 237 (453)
.+..+..+..+ .+++.|++++|.+..... .+..+++|+.|++++|.+.+..+..+... .++++.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 65555555544 456666666666654431 12344567777777777665555444322 256777777
Q ss_pred cCCccccc----------Cchhhc--CCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhh
Q 048417 238 RSNKFYNL----------LPKELC--DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLI 305 (453)
Q Consensus 238 ~~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~ 305 (453)
++|...+. ....+. ..++|++|++++|.+.+..|..+..+++|+.|+++++.+.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------- 316 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD---------- 316 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----------
Confidence 76643221 111111 23567788888887776666677777776666666655332211
Q ss_pred hhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCC
Q 048417 306 ATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSL 385 (453)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 385 (453)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 317 ----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 317 ----------------NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp ----------------TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ----------------hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 1223466678888888887766677777788888888888888766677777888888888888
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccc
Q 048417 386 NQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQ 423 (453)
Q Consensus 386 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~ 423 (453)
|++++..+..+..+++|++|++++|++++..|....+.
T Consensus 381 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 418 (455)
T 3v47_A 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418 (455)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred CccccCCHhHhccCCcccEEEccCCCcccCCCcchHHH
Confidence 88876666667778888888888888887777654443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=330.25 Aligned_cols=426 Identities=18% Similarity=0.117 Sum_probs=322.8
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEV 89 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~ 89 (453)
-.+++++|+|++|.+++..+..|.++++|++|++++|...+.++...+.++++|++|++++|.+... +..+.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999998888889999999999999999766777444459999999999999999875 667889999999
Q ss_pred EEccCCccccccc-----cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC--CcccE
Q 048417 90 LSLGSNSFSIALP-----LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY--QNLMI 162 (453)
Q Consensus 90 L~l~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~ 162 (453)
|++++|.+.+..+ ..+++|++|++++|.+....+. ..++.+++|++|++++|.+++..+..+..+ ++|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC---GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc---hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999886432 2467999999999998764321 234579999999999999988788888777 89999
Q ss_pred EEcccCccCCCCCcccccccc------ccEEEccCCcccccc-c------------------------------------
Q 048417 163 LDLSNNKFTGNLPISLGSLIS------LQSLHLRKNNLCGTI-H------------------------------------ 199 (453)
Q Consensus 163 L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~-~------------------------------------ 199 (453)
|++++|.+.+..|..+..+++ |+.|++++|.+.... .
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 999999998777776666555 999999988654321 0
Q ss_pred cccc--cCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccc
Q 048417 200 SLEN--CTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNL 277 (453)
Q Consensus 200 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 277 (453)
.+.+ .++++.|++++|.+.+..+.. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 1111 268999999999887654433 4578999999999999998888899999999999999999997778899999
Q ss_pred cccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCC--------------------
Q 048417 278 RAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSK-------------------- 337 (453)
Q Consensus 278 ~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------------------- 337 (453)
++|+.|+++++.+.......+...+....- .+.......+..+++|+.|++++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-------~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTL-------DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEE-------EEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEE-------ECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 999999999987644433211111110000 00001111111233444444444
Q ss_pred CcCCCcC-CccccCCCCCcEEEcCCccCCCCCC-ccccCCCCCCEEEcCCCcCC-----CCCCccccCCCCCCEEEccCC
Q 048417 338 NNFSGKI-PLEVTNLKVLQSVNLSNNFFTGRIP-ESVGTMRSLESIDFSLNQLS-----GEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 338 ~~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n 410 (453)
|++++.. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. +..+..+..+++|++|++++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 4433211 1224478999999999999985443 24567899999999999987 344567889999999999999
Q ss_pred cccccCCCC-cccceeecccCCCCCccCCCCCCCCCCC
Q 048417 411 NLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEH 447 (453)
Q Consensus 411 ~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~ 447 (453)
++++.++.. ..+++|+.+++++|.+++.|.....+.+
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L 528 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCC
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhhccc
Confidence 999887775 8899999999999999888765544433
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=304.66 Aligned_cols=382 Identities=19% Similarity=0.187 Sum_probs=235.8
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEEc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLSL 92 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~l 92 (453)
..++++++++.++. +|..+. ++|++|++++|.+++..+..+ ..+++|++|++++|+++.. +..+.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGT-TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhh-ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 33555666555543 333222 555666666665533333333 5555666666666655543 334555556666666
Q ss_pred cCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc--cEEEcccCcc
Q 048417 93 GSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL--MILDLSNNKF 170 (453)
Q Consensus 93 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 170 (453)
++|.+.......+++|++|++++|.+..... +..++.+++|++|++++|.++.. .+..+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~---p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCCPMASLRHLDLSFNDFDVLPV---CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSCCCTTCSEEECCSSCCSBCCC---CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCccccccCCEEECCCCCccccCc---hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 6665554333345556666666555543211 11223455566666665555431 12333333 5555555555
Q ss_pred --CCCCCccc--------------------------cccccccEEEccCCcc-----cccccccccc-------------
Q 048417 171 --TGNLPISL--------------------------GSLISLQSLHLRKNNL-----CGTIHSLENC------------- 204 (453)
Q Consensus 171 --~~~~~~~l--------------------------~~l~~L~~L~l~~~~~-----~~~~~~~~~~------------- 204 (453)
.+..|..+ ..+++|+.+++++|.. .+....+..+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 33333332 2345666666666531 1111111222
Q ss_pred --------------CCCCEEeCCCCcccccCchHHH----hcc--------------------------CcceEEEecCC
Q 048417 205 --------------TALMTLDVGENELVENIPTWIR----ERF--------------------------SRIVVLILRSN 240 (453)
Q Consensus 205 --------------~~L~~L~l~~~~~~~~~~~~~~----~~~--------------------------~~L~~L~l~~~ 240 (453)
++|++|++++|.+.+.+|..++ ..+ .++++|++++|
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 3566666666666544443221 011 23455555555
Q ss_pred cccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCc
Q 048417 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGRE 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (453)
.+.... ....+++|++|++++|.+.+..|..+..+++|+.|+++++....+...
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------ 395 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV------------------------ 395 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH------------------------
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc------------------------
Confidence 442211 116778999999999999988899999999999999999876543321
Q ss_pred chhhhhcCcccEEecCCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCC
Q 048417 321 AKYERTLNLVRIIDFSKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSL 399 (453)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 399 (453)
...+..+++|++|++++|.+++.+| ..+..+++|+.|++++|.+++.++..+. ++|+.|++++|+++ .+|..+..+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 1123557889999999999987344 4578899999999999999866665443 79999999999999 677777799
Q ss_pred CCCCEEEccCCcccccCCC-CcccceeecccCCCCC
Q 048417 400 KFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
++|++|++++|++++.++. ...+++|+.+++++|+
T Consensus 473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 9999999999999965555 6889999999999996
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=303.79 Aligned_cols=398 Identities=16% Similarity=0.120 Sum_probs=245.5
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC--CCcC
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG--QIPN 80 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~~~ 80 (453)
+..|..+.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..+ +.+++|++|++++|.++. .+..
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~ 118 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF-GPLSSLKYLNLMGNPYQTLGVTSL 118 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH-TTCTTCCEEECTTCCCSSSCSSCS
T ss_pred ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh-ccCCCCcEEECCCCcccccchhhh
Confidence 3456789999999999999999988888899999999999999999966555555 899999999999999985 3567
Q ss_pred ccCCCCCcEEEccCCccccccc----cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchh-hh
Q 048417 81 LTNAAQLEVLSLGSNSFSIALP----LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC-WM 155 (453)
Q Consensus 81 l~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~ 155 (453)
+.++++|++|++++|.+.+..+ ..+++|++|++++|.+.+..+..+ ..+++|++|+++++.+. ..+.. +.
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~~~-~~~~~~~~ 193 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL----KSIRDIHHLTLHLSESA-FLLEIFAD 193 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----TTCSEEEEEEEECSBST-THHHHHHH
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh----hccccCceEecccCccc-ccchhhHh
Confidence 8899999999999998443322 236789999999998876444333 34566666666665554 23322 23
Q ss_pred cCCcccEEEcccCccCCCC--Cc-cc----------------------------cccccccEEEccCCcccccc------
Q 048417 156 NYQNLMILDLSNNKFTGNL--PI-SL----------------------------GSLISLQSLHLRKNNLCGTI------ 198 (453)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~~--~~-~l----------------------------~~l~~L~~L~l~~~~~~~~~------ 198 (453)
.+++|++|++++|.+.+.. +. .. ..+++|+.+++++|.+.+..
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 4556666666665554321 00 00 11122222222222221110
Q ss_pred ------------------------------ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCch
Q 048417 199 ------------------------------HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPK 248 (453)
Q Consensus 199 ------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 248 (453)
.......+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+.
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~ 352 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK 352 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc
Confidence 00011234555555555542 34444444455555555555555443221
Q ss_pred ---hhcCCCCccEEEccCCcCCCCcc--cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchh
Q 048417 249 ---ELCDLAFLQIVDLADNNLSGEVP--RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKY 323 (453)
Q Consensus 249 ---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (453)
.+..+++|++|++++|.+++..+ ..+..+++|+.|++++|+...++..... ...+..+.... ..+.. ..
T Consensus 353 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~--~~~L~~L~Ls~-N~l~~---l~ 426 (549)
T 2z81_A 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW--PEKMRFLNLSS-TGIRV---VK 426 (549)
T ss_dssp HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC--CTTCCEEECTT-SCCSC---CC
T ss_pred chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcc--cccccEEECCC-CCccc---cc
Confidence 23444555555555555542211 2344555555555555543322211000 00000000000 00000 00
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLN 403 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 403 (453)
...+++|++|++++|++++.. ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+
T Consensus 427 ~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 427 TCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp TTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred chhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 011357899999999887532 46899999999999998 7776 46799999999999999988888899999999
Q ss_pred EEEccCCcccccCCCC
Q 048417 404 HLNLSNNNLTGKIPSS 419 (453)
Q Consensus 404 ~L~l~~n~l~~~~~~~ 419 (453)
+|++++|++.+..+..
T Consensus 501 ~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 501 KIWLHTNPWDCSCPRI 516 (549)
T ss_dssp EEECCSSCBCCCHHHH
T ss_pred EEEecCCCccCCCccH
Confidence 9999999999876643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=301.81 Aligned_cols=374 Identities=17% Similarity=0.175 Sum_probs=290.2
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC--CCcCcc
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG--QIPNLT 82 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~~~l~ 82 (453)
.|..+.++++|++|+|++|.+++..|.+|.++++|++|++++|+++ .+|.. .+++|++|++++|.++. .+..+.
T Consensus 37 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 37 WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhc
Confidence 3456889999999999999998887889999999999999999994 67665 78999999999999986 356889
Q ss_pred CCCCCcEEEccCCccccccccccccC--cEEECcCCCC--CCchhhhhhh----------------------hhcccCcc
Q 048417 83 NAAQLEVLSLGSNSFSIALPLISSYL--IELDFSNNSI--SGSIFHFICY----------------------RANELNKW 136 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~~~~----------------------~~~~~~~L 136 (453)
++++|++|++++|.+.......++.| ++|++++|.+ .+..+..+.. .+..+++|
T Consensus 113 ~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp GCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred cCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 99999999999999987555567777 9999999887 4333332222 12235555
Q ss_pred cEEeccCCC-------CCCCCchhhhc---------------------------CCcccEEEcccCccCCCCCccc----
Q 048417 137 QILYLSGNF-------LQGELPDCWMN---------------------------YQNLMILDLSNNKFTGNLPISL---- 178 (453)
Q Consensus 137 ~~L~l~~~~-------~~~~~~~~l~~---------------------------l~~L~~L~l~~~~~~~~~~~~l---- 178 (453)
+.+++++|. +.+..+ .+.. .++|++|++++|.+.+..|..+
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 666655553 111111 1222 3467777777777776777766
Q ss_pred -cccccccEEEccCCcccccc-cccccc---CCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCC
Q 048417 179 -GSLISLQSLHLRKNNLCGTI-HSLENC---TALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253 (453)
Q Consensus 179 -~~l~~L~~L~l~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 253 (453)
..+++|+.+++++|.+ ..+ ..+..+ .+++.|++++|.+..... ...+++|++|++++|.+.+..+..+..+
T Consensus 272 ~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 347 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHL 347 (520)
T ss_dssp SCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCC
T ss_pred cccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccC
Confidence 7777888888887777 333 233222 568888888887754221 1467899999999999998888899999
Q ss_pred CCccEEEccCCcCCC--CcccccccccccceeccccCcchh-hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcc
Q 048417 254 AFLQIVDLADNNLSG--EVPRCIHNLRAMVTMNSHAGKAIQ-YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330 (453)
Q Consensus 254 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (453)
++|++|++++|.+.+ .+|..+..+++|+.|+++++.... ++.. .+..+++|
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--------------------------~~~~l~~L 401 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--------------------------DCSWTKSL 401 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--------------------------SCCCCTTC
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc--------------------------hhccCccC
Confidence 999999999999985 556789999999999999987554 2221 12346889
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc-cccCCCCCCEEEccC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ-SMSSLKFLNHLNLSN 409 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~ 409 (453)
++|++++|.+++..+..+. ++|+.|++++|++. .+|..+..+++|++|++++|+++ .+|. .+..+++|++|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence 9999999999877766654 79999999999999 88888889999999999999999 5555 489999999999999
Q ss_pred CcccccCC
Q 048417 410 NNLTGKIP 417 (453)
Q Consensus 410 n~l~~~~~ 417 (453)
|++++..+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99986543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=291.24 Aligned_cols=367 Identities=17% Similarity=0.138 Sum_probs=270.9
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 84 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~ 84 (453)
+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|++++..|..+ ..+++|++|++++|.++..+.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT-TTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh-CCCCCCCEEECCCCcCCccCcc--cc
Confidence 565443 789999999999988777899999999999999999966656665 8899999999999999876655 78
Q ss_pred CCCcEEEccCCcccccc-c---cccccCcEEECcCCCCCCchhhhhhhhhcccCcc--cEEeccCCCC--CCCCchhhhc
Q 048417 85 AQLEVLSLGSNSFSIAL-P---LISSYLIELDFSNNSISGSIFHFICYRANELNKW--QILYLSGNFL--QGELPDCWMN 156 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~~~-~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~~ 156 (453)
++|++|++++|.+.... + ..+++|++|++++|.+..... ..+++| ++|++++|.+ ++..|..+..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL-------LPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT-------GGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch-------hhhhhceeeEEEeecccccccccCcccccc
Confidence 89999999999988743 2 236789999999998875322 234555 9999998887 5444444433
Q ss_pred --------------------------CCcccEEEcccCc----------------------------cCC----CCCccc
Q 048417 157 --------------------------YQNLMILDLSNNK----------------------------FTG----NLPISL 178 (453)
Q Consensus 157 --------------------------l~~L~~L~l~~~~----------------------------~~~----~~~~~l 178 (453)
+++|+.+++++|. +.+ ..+..
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~- 272 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF- 272 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-
Confidence 2334444444431 000 00000
Q ss_pred cccccccEEEccCCcccc-ccccc-----c--------------------------ccCCCCEEeCCCCcccccCchHHH
Q 048417 179 GSLISLQSLHLRKNNLCG-TIHSL-----E--------------------------NCTALMTLDVGENELVENIPTWIR 226 (453)
Q Consensus 179 ~~l~~L~~L~l~~~~~~~-~~~~~-----~--------------------------~~~~L~~L~l~~~~~~~~~~~~~~ 226 (453)
...++|++|++++|.+.+ ++..+ . ...+++.|++++|.+..... .
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~ 349 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC---P 349 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---C
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC---c
Confidence 011245555555554442 11111 1 12457788888877643221 1
Q ss_pred hccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCC--CcccccccccccceeccccCcchh-hhhhhhhccch
Q 048417 227 ERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG--EVPRCIHNLRAMVTMNSHAGKAIQ-YQFLLYASRAP 303 (453)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~~~~~ 303 (453)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|+.|+++++.... ++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-------- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS--------
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh--------
Confidence 467899999999999998888899999999999999999985 335678999999999999987543 221
Q ss_pred hhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEc
Q 048417 304 LIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDF 383 (453)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 383 (453)
..+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 422 ------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 422 ------------------RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp ------------------CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred ------------------hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 1234578899999999999866665554 79999999999998 78877779999999999
Q ss_pred CCCcCCCCCCcc-ccCCCCCCEEEccCCcccccCC
Q 048417 384 SLNQLSGEIPQS-MSSLKFLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 384 ~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 417 (453)
++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus 481 ~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 481 ASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999 55554 9999999999999999997654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=279.58 Aligned_cols=345 Identities=23% Similarity=0.257 Sum_probs=254.5
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 91 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~ 91 (453)
+++++.|+++++.++. .+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 6789999999998855 33 47889999999999999855443 4889999999999999987666 88899999999
Q ss_pred ccCCccccccc-cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCcc
Q 048417 92 LGSNSFSIALP-LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170 (453)
Q Consensus 92 l~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 170 (453)
+++|.+....+ ..+++|++|++++|.+.... .+..+++|++|++++ .+... + .+..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~-~-~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDL-K-PLANLTTLERLDISSNKV 189 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCc-h-hhccCCCCCEEECcCCcC
Confidence 99998876543 33678889999888877532 245688899988863 44422 2 378888999999999888
Q ss_pred CCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhh
Q 048417 171 TGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250 (453)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 250 (453)
.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh--h
Confidence 743 347788889999998888876554 6678889999998888755 22 23467888888888888876543 7
Q ss_pred cCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcc
Q 048417 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330 (453)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (453)
..+++|++|++++|.+.+. +. +..+++|+.|+++++....... +..+++|
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~----------------------------~~~l~~L 311 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP----------------------------ISNLKNL 311 (466)
T ss_dssp TTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG----------------------------GGGCTTC
T ss_pred hcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh----------------------------hcCCCCC
Confidence 7888888888888888743 33 6677777777777765432211 2346677
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 410 (453)
++|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.+..| +..+++|++|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 777777777765444 55677777777777777643 456677777777777777775544 667777777777777
Q ss_pred ccccc
Q 048417 411 NLTGK 415 (453)
Q Consensus 411 ~l~~~ 415 (453)
.+++.
T Consensus 386 ~~~~~ 390 (466)
T 1o6v_A 386 AWTNA 390 (466)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 77753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=285.83 Aligned_cols=349 Identities=18% Similarity=0.151 Sum_probs=243.3
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCC-CCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCc-
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSR-FPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIP- 79 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~- 79 (453)
+..|..+.++++|++|++++|.+.+. .+.+|.++++|++|++++|++.+..|..+ +.+++|++|++++|.+++ .+.
T Consensus 44 ~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~ 122 (455)
T 3v47_A 44 ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSG 122 (455)
T ss_dssp EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHS
T ss_pred cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCCccccCc
Confidence 34578899999999999999998644 46779999999999999999977667776 889999999999999986 233
Q ss_pred -CccCCCCCcEEEccCCcccccccc----ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchh-
Q 048417 80 -NLTNAAQLEVLSLGSNSFSIALPL----ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC- 153 (453)
Q Consensus 80 -~l~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~- 153 (453)
.+..+++|++|++++|.+....+. .+++|++|++++|.+....+..+... ...+++.++++++.+.+..+..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF--QGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG--TTCEEEEEECTTCBCTTCSTTCT
T ss_pred ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc--ccccccccccccCcccccchhhc
Confidence 378889999999999998876443 25678888888887765544333221 1257777888877776433322
Q ss_pred -------hhcCCcccEEEcccCccCCCCCcccccc---ccccEEEccCCccccccccccccCCCCEEeCCCCcccccCch
Q 048417 154 -------WMNYQNLMILDLSNNKFTGNLPISLGSL---ISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPT 223 (453)
Q Consensus 154 -------l~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 223 (453)
+..+++|++|++++|.+.+..|..+... .+++.|++++|...+.......+..+ ...
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------------~~~ 267 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP-------------DNF 267 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC-------------CTT
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC-------------ccc
Confidence 2245677777777777765555544332 66777777766543321111000000 000
Q ss_pred HH-HhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccc
Q 048417 224 WI-RERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 224 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
.+ .-..++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+++++......
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 339 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-------- 339 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------
Confidence 00 001245666666666666655666666666666666666666555556666666666666665432221
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEE
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESID 382 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 382 (453)
...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 340 ------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 340 ------------------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp ------------------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 12234577899999999999988888999999999999999999966667789999999999
Q ss_pred cCCCcCCCCCC
Q 048417 383 FSLNQLSGEIP 393 (453)
Q Consensus 383 l~~n~l~~~~~ 393 (453)
+++|++....|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 99999997665
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=289.21 Aligned_cols=419 Identities=19% Similarity=0.157 Sum_probs=251.7
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCcEEE
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLS 91 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~~L~ 91 (453)
+++++|||++|.+++..+.+|.++++|++|+|++|++ ..++...|.++++|++|+|++|+++..++ .+.++.+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4688888888888777777888888888888888888 44544444888888888888888887654 467888888888
Q ss_pred ccCCcccccccc---ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc----cEEE
Q 048417 92 LGSNSFSIALPL---ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL----MILD 164 (453)
Q Consensus 92 l~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~ 164 (453)
+++|.++..... .+++|++|++++|.+.... .+..+..+++|++|++++|++++..+..+..+.++ ..++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 888888766543 3568888888888876432 12233468888888888888876555555444332 2455
Q ss_pred cccCccCCCCCccccccccccEEEccC-----------------------------------------------------
Q 048417 165 LSNNKFTGNLPISLGSLISLQSLHLRK----------------------------------------------------- 191 (453)
Q Consensus 165 l~~~~~~~~~~~~l~~l~~L~~L~l~~----------------------------------------------------- 191 (453)
++.+.+....+..+ ....++.+++.+
T Consensus 208 ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 208 LSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp CTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred cccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 55555442221111 111111221111
Q ss_pred -----------------------------CccccccccccccCCCCEEeCCCCcccccCchHH-----------------
Q 048417 192 -----------------------------NNLCGTIHSLENCTALMTLDVGENELVENIPTWI----------------- 225 (453)
Q Consensus 192 -----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------- 225 (453)
+.+... ..+.....++.|++.++.+........
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 111100 011122334444444443322111000
Q ss_pred -HhccCcceEEEecCCcccc--cCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhh-hhcc
Q 048417 226 -RERFSRIVVLILRSNKFYN--LLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL-YASR 301 (453)
Q Consensus 226 -~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~-~~~~ 301 (453)
...+++|+.++++.|.+.. ..+..+..+.+++.+++..+... ..+..+..+++++.+++..+......... +...
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccc
Confidence 0012333333333333211 11222223333333333333332 22233344444444444433322211110 0000
Q ss_pred chhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCC-CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCE
Q 048417 302 APLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFS-GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLES 380 (453)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 380 (453)
... .................+..++.|+.|++++|... ...|..+..+++|+.|++++|++.+..|.+|.++++|++
T Consensus 445 ~~l--~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 445 RNL--IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TTC--CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccc--ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 000 00000011112223445566788999999998753 357788999999999999999999888899999999999
Q ss_pred EEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-ccc-ceeecccCCCCCccCCCCCCCCC
Q 048417 381 IDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQL-QSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 381 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l-~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
|++++|++++..+..|..+++|++|++++|++++.+|.. ..+ ++|+.+++++| |++|+|.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N-----p~~C~C~ 584 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-----DFACTCE 584 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC-----CBCCSGG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC-----CCcccCC
Confidence 999999999888889999999999999999999877765 555 68999999999 6667775
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=277.88 Aligned_cols=370 Identities=22% Similarity=0.205 Sum_probs=172.5
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCC-------------eEEEEccCCcccCCC
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQ-------------IYVLDLSFNQIHGQI 78 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------L~~L~ls~~~~~~~~ 78 (453)
.++|++|++++|.+ +..|..++++++|++|++++|.+.+.+|..+ +.+++ +++|++++|.+++.+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 45566666666666 4555566666666666666666655555544 33333 356666666555433
Q ss_pred cCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCC
Q 048417 79 PNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQ 158 (453)
Q Consensus 79 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 158 (453)
.. .++|++|++++|.+++ .+..+++|++|++++|.+.+.. . -.++|++|++++|.+++ +| .+..++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~-----~---~~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS-----D---LPPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCC-----S---CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCccc-----C---CCCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 31 2456666666666554 2333455666666665554211 0 02456666666665553 44 355556
Q ss_pred cccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEec
Q 048417 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILR 238 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 238 (453)
+|++|++++|.+.+ +|..+ ++|++|++++|.+++++ .+..+++|+.|++++|.+.+ ++. ..++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECc
Confidence 66666666665552 33221 35566666666555533 45555566666666555543 221 12355555665
Q ss_pred CCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcC
Q 048417 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (453)
+|.+. .+| .+..+++|++|++++|.+. .+|.. .++|+.|+++++....++... ..+... .+..
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l~~~~-----~~L~~L------~ls~ 286 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPELP-----QSLTFL------DVSE 286 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCCCC-----TTCCEE------ECCS
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccccCccc-----CcCCEE------ECcC
Confidence 55554 233 2555555556666555555 23322 245555555555433221110 000000 0000
Q ss_pred Ccchhh-hhcCcccEEecCCCcCCCcCCccccCC-CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 319 REAKYE-RTLNLVRIIDFSKNNFSGKIPLEVTNL-KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 319 ~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
.....+ ..+++|+.|++++|.+++ ++ .+ ++|+.|++++|++.+ +|.. +++|++|++++|+++ .+|.
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred CccCcccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--
Confidence 000000 112467777777777663 22 22 478888888888773 5543 577888888888887 4555
Q ss_pred cCCCCCCEEEccCCcccc--cCCC-Cccc-------------ceeecccCCCCCccC
Q 048417 397 SSLKFLNHLNLSNNNLTG--KIPS-STQL-------------QSFDASSFSGNDLCR 437 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~--~~~~-~~~l-------------~~L~~l~l~~n~l~~ 437 (453)
.+++|++|++++|++++ .+|. +..+ ++|+.+++++|++.+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 46788888888888876 3443 3444 678888888888765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.78 Aligned_cols=326 Identities=22% Similarity=0.269 Sum_probs=271.9
Q ss_pred CCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCC
Q 048417 8 NWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQL 87 (453)
Q Consensus 8 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L 87 (453)
.+..+++|++|++++|.+++.. . +.++++|++|++++|++.+..+ +..+++|++|++++|.++..++ +.++++|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 4678999999999999997653 3 9999999999999999965544 4899999999999999987654 8899999
Q ss_pred cEEEccCCccccccc-cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 88 EVLSLGSNSFSIALP-LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 88 ~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
++|++++|.+..... ..+++|++|+++++ +.... .+..+++|++|++++|.++. . ..+..+++|++|+++
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~-~~~~~------~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQ-VTDLK------PLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIAT 207 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEES-CCCCG------GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCc-ccCch------hhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEec
Confidence 999999999876432 33679999999743 33211 24579999999999999884 3 348899999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
+|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccc
Confidence 999986544 77899999999999998865 467788999999999999876444 457899999999999997754
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhh
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT 326 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (453)
+ +..+++|++|++++|.+.+..+ +..+++|+.|+++++....... +..
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------------------------~~~ 329 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----------------------------VSS 329 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----------------------------GGG
T ss_pred c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----------------------------hcc
Confidence 4 8889999999999999985433 7899999999999987543322 245
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 390 (453)
+++|++|++++|.+++. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|.+++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78899999999999854 468889999999999999986655 8899999999999999985
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=267.46 Aligned_cols=229 Identities=18% Similarity=0.118 Sum_probs=170.4
Q ss_pred CCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCC
Q 048417 7 DNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 86 (453)
Q Consensus 7 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~ 86 (453)
..+.++++|++|++++|.+++. | .+..+++|++|++++|++++ ++ +..+++|++|++++|.+++.+ +.++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 3456688899999999988664 4 68888999999999998855 44 377888999999999888753 778888
Q ss_pred CcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 87 LEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
|++|++++|.+.......+++|++|++++|.+.+. .+..+++|++|++++|...+.. .+..+++|++|+++
T Consensus 108 L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999888876545577888888888887753 1446888888888888544344 36778888888888
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
+|.+++ .| +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+.+..
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC
Confidence 888875 33 67788888888888888765 36777888888888888866 44 346778888888888877654
Q ss_pred chhhcCCCCccEEEccCC
Q 048417 247 PKELCDLAFLQIVDLADN 264 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~ 264 (453)
+ ..+++|+.|+++++
T Consensus 250 ~---~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 250 V---STLSKLTTLHCIQT 264 (457)
T ss_dssp C---TTCTTCCEEECTTC
T ss_pred H---HHCCCCCEEeccCC
Confidence 3 33444444444433
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=281.40 Aligned_cols=429 Identities=21% Similarity=0.169 Sum_probs=272.2
Q ss_pred ccCCCCcCCCcc---cEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-
Q 048417 4 KVNDNWIPPFQL---ATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP- 79 (453)
Q Consensus 4 ~l~~~~~~~~~L---~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~- 79 (453)
.+|+.+..|... .+.+=++-+++. +|..+. +++++|+|++|+++ .++...|.++++|++|++++|+++..++
T Consensus 19 ~~p~~~~~c~~~~~~~~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~ 94 (635)
T 4g8a_A 19 SIPESWEPCVEVVPNITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDG 94 (635)
T ss_dssp ------CCSEEEETTTEEECTTSCCSS-CCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCccccCCCCEEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence 467777666433 244444444533 444332 47999999999995 4554444999999999999999998655
Q ss_pred CccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC-CCchhhh
Q 048417 80 NLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG-ELPDCWM 155 (453)
Q Consensus 80 ~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~ 155 (453)
.+.++++|++|++++|++....+.. +++|++|++++|.+...... .++.+++|++|++++|.++. ..|..+.
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 170 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFS 170 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh----hhhcCcccCeeccccCccccCCCchhhc
Confidence 5889999999999999998766544 57999999999998864333 34579999999999999875 3577888
Q ss_pred cCCcccEEEcccCccCCCCCccccccccc----cEEEccCCccccccccccccCCCCEEeCCCCccccc-----------
Q 048417 156 NYQNLMILDLSNNKFTGNLPISLGSLISL----QSLHLRKNNLCGTIHSLENCTALMTLDVGENELVEN----------- 220 (453)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------- 220 (453)
.+++|++|++++|.+.+..+..+..+.++ ..++++.|.+..+.........++.+++.++.....
T Consensus 171 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 171 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcc
Confidence 99999999999999997777777655443 467788887765432221111222222221110000
Q ss_pred ----------------------------------------------CchHHHhc----------------------cCcc
Q 048417 221 ----------------------------------------------IPTWIRER----------------------FSRI 232 (453)
Q Consensus 221 ----------------------------------------------~~~~~~~~----------------------~~~L 232 (453)
.....+.. ...+
T Consensus 251 l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L 330 (635)
T 4g8a_A 251 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 330 (635)
T ss_dssp CEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCC
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhh
Confidence 00000111 2234
Q ss_pred eEEEecCCcccccCchh-------------------hcCCCCccEEEccCCcCC--CCcccccccccccceeccccCcch
Q 048417 233 VVLILRSNKFYNLLPKE-------------------LCDLAFLQIVDLADNNLS--GEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 233 ~~L~l~~~~~~~~~~~~-------------------~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
+.+++.++.+....... ...+++|+.+++++|.+. +..+.......+++.+++..+...
T Consensus 331 ~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~ 410 (635)
T 4g8a_A 331 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410 (635)
T ss_dssp SEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred hhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence 44444444332221110 112233333333333332 111222233333333333333221
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC-CCCc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG-RIPE 370 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~ 370 (453)
........ . ..+..................+..+++++.++++.|.+....+..+..++.++.|++++|.+.+ ..|.
T Consensus 411 ~~~~~~~~-l-~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 411 TMSSNFLG-L-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp EECSCCTT-C-TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccccccc-c-ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch
Confidence 11110000 0 0000000000000111223445678889999999999987788888899999999999997543 4678
Q ss_pred cccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCC
Q 048417 371 SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSG 442 (453)
Q Consensus 371 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~ 442 (453)
.+..+++|++|++++|++.+..|..|..+++|++|+|++|++++..+.. ..+++|+.+++++|.+.+.+...
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 8999999999999999999888999999999999999999999876654 78999999999999998886654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=272.56 Aligned_cols=316 Identities=22% Similarity=0.180 Sum_probs=170.5
Q ss_pred cEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEEccC
Q 048417 16 ATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLSLGS 94 (453)
Q Consensus 16 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~l~~ 94 (453)
+.++.++..++. +|..+ .+++++|++++|.+++..+..+ ..+++|++|++++|.++.. +..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 455666665533 33333 2466777777777744444443 6667777777777766653 44566666666666666
Q ss_pred Cccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC
Q 048417 95 NSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 95 ~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
|.+....... +++|++|++++|.+...... .+..+++|++|++++|.++...+..|..+++|++|++++|.+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 6655433221 23333344433333321111 1223445555555555444333444444455555555555444
Q ss_pred CCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhh
Q 048417 172 GNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250 (453)
Q Consensus 172 ~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 250 (453)
...+..+..+++|+.|++++|.+.... ..+..+++|+ .|++++|...+..+...
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~-------------------------~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK-------------------------VLEISHWPYLDTMTPNC 220 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC-------------------------EEEEECCTTCCEECTTT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc-------------------------eeeCCCCccccccCccc
Confidence 333333444444444444444444333 2333333444 44444433333333333
Q ss_pred cCCCCccEEEccCCcCCCCcc-cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCc
Q 048417 251 CDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNL 329 (453)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (453)
....+|++|++++|.+. .+| ..+ ..+++
T Consensus 221 ~~~~~L~~L~l~~n~l~-~~~~~~~--------------------------------------------------~~l~~ 249 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLT-AVPYLAV--------------------------------------------------RHLVY 249 (477)
T ss_dssp TTTCCCSEEEEESSCCC-SCCHHHH--------------------------------------------------TTCTT
T ss_pred ccCccccEEECcCCccc-ccCHHHh--------------------------------------------------cCccc
Confidence 33335555555555554 222 111 23455
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 67777777777655566677777777777777777766667777777777777777777765556677777777777777
Q ss_pred Cccccc
Q 048417 410 NNLTGK 415 (453)
Q Consensus 410 n~l~~~ 415 (453)
|++...
T Consensus 330 N~l~c~ 335 (477)
T 2id5_A 330 NPLACD 335 (477)
T ss_dssp SCEECS
T ss_pred CCccCc
Confidence 777643
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=271.02 Aligned_cols=376 Identities=19% Similarity=0.230 Sum_probs=249.7
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcc-------------cEEEcCCCcccccchhhHhhcCCCeEEEEc
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHL-------------NYLDLSYSGIIGTIPNIFWSSASQIYVLDL 69 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 69 (453)
|.+|+.+.++++|++|++++|.+.+..|..++++++| ++|+++++.+ +.+|.. .++|++|++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp~~----~~~L~~L~l 98 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPEL----PPHLESLVA 98 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCCSC----CTTCSEEEC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCCCC----cCCCCEEEc
Confidence 6799999999999999999999988889999988875 9999999998 445542 378999999
Q ss_pred cCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCC
Q 048417 70 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE 149 (453)
Q Consensus 70 s~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 149 (453)
++|.+++.+.. ..+|++|++++|.+.+.. ...++|++|++++|.+.+. + .+..+++|++|++++|++++
T Consensus 99 ~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~l-p-----~~~~l~~L~~L~l~~N~l~~- 167 (454)
T 1jl5_A 99 SCNSLTELPEL---PQSLKSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEKL-P-----ELQNSSFLKIIDVDNNSLKK- 167 (454)
T ss_dssp CSSCCSSCCCC---CTTCCEEECCSSCCSCCC-SCCTTCCEEECCSSCCSSC-C-----CCTTCTTCCEEECCSSCCSC-
T ss_pred cCCcCCccccc---cCCCcEEECCCCccCccc-CCCCCCCEEECcCCCCCCC-c-----ccCCCCCCCEEECCCCcCcc-
Confidence 99999875532 478999999999888633 3347899999999988752 2 25679999999999999884
Q ss_pred CchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhcc
Q 048417 150 LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERF 229 (453)
Q Consensus 150 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 229 (453)
+|.. ..+|++|++++|.+.+ .| .+..+++|+.|++++|.+++++.. .++|+.|++++|.+. .++. +..+
T Consensus 168 lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp~--~~~l 236 (454)
T 1jl5_A 168 LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELPE--LQNL 236 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-cccc--cCCC
Confidence 5543 3589999999999885 55 588899999999999988865533 258999999999886 4553 3578
Q ss_pred CcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhh
Q 048417 230 SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309 (453)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 309 (453)
++|++|++++|.+.+. +. .+++|++|++++|.+. .+|.. .++|+.++++++....+... +..+...
T Consensus 237 ~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~l~~~-----~~~L~~L- 302 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSGLSEL-----PPNLYYL- 302 (454)
T ss_dssp TTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSEESCC-----CTTCCEE-
T ss_pred CCCCEEECCCCcCCcc-cc---cccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCcccCc-----CCcCCEE-
Confidence 8899999999988653 32 2478889999998887 45543 36788888888775543211 0000000
Q ss_pred hhHHHHhcCCcchhhhhc-CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcC
Q 048417 310 EDAFVVMKGREAKYERTL-NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388 (453)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 388 (453)
.+.......+... ++|++|++++|++++ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|++
T Consensus 303 -----~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 303 -----NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp -----ECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred -----ECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence 0001111111223 589999999999985 5543 589999999999998 6666 478999999999999
Q ss_pred CC--CCCccccCC-------------CCCCEEEccCCcccccCCCCcccceeecccCCCCCc
Q 048417 389 SG--EIPQSMSSL-------------KFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435 (453)
Q Consensus 389 ~~--~~~~~l~~l-------------~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l 435 (453)
.+ .+|..+..+ ++|++|++++|++++. +.+ .+++..+++.+|.+
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~~i--P~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PDI--PESVEDLRMNSERV 428 (454)
T ss_dssp SSCCCCCTTCCEEECCC---------------------------------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc-ccc--hhhHhheeCcCccc
Confidence 97 678888777 8999999999999962 322 24567777777764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=268.42 Aligned_cols=314 Identities=21% Similarity=0.188 Sum_probs=212.3
Q ss_pred EEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEec
Q 048417 65 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141 (453)
Q Consensus 65 ~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l 141 (453)
+.++.++..++..+..+ ..+++.|++++|.+....+.. +++|++|++++|.+....+. .+.++++|++|++
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEEC
Confidence 45666666666665544 246777777777776544322 44666666666665543222 2334666666666
Q ss_pred cCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCccccc
Q 048417 142 SGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVEN 220 (453)
Q Consensus 142 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 220 (453)
++|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+.... ..+..+++|+.|++++|.+.+
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 166 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS- 166 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-
Confidence 666666433344556666666666666666555555666666666666666665544 355556666666666665543
Q ss_pred CchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhc
Q 048417 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300 (453)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~ 300 (453)
.+...+..+++|+.|++++|.+....+..+..+++|++|++++|...+.++...
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------------------- 220 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-------------------------- 220 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--------------------------
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--------------------------
Confidence 333333455666666666666555555555556666666666555443333211
Q ss_pred cchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCE
Q 048417 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLES 380 (453)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 380 (453)
....+|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 221 ------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 221 ------------------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp ------------------------TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred ------------------------ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 11236899999999998555567889999999999999999777788999999999
Q ss_pred EEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCc
Q 048417 381 IDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDL 435 (453)
Q Consensus 381 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l 435 (453)
|++++|++.+..+..+..+++|++|++++|++++..+.. ..+++|+.+++++|++
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 999999999888999999999999999999999765544 7889999999999974
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=250.72 Aligned_cols=307 Identities=20% Similarity=0.305 Sum_probs=164.2
Q ss_pred ccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEE
Q 048417 33 LYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELD 112 (453)
Q Consensus 33 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 112 (453)
+.++++|++|+++++.+ ..++. +..+++|++|++++|.++..+. +..+++|++|++++|.+....
T Consensus 40 ~~~l~~L~~L~l~~~~i-~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~----------- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV-ASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS----------- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----------
T ss_pred chhcccccEEEEeCCcc-ccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-----------
Confidence 34455555555555555 22332 2445555555555555554333 455555555555555444211
Q ss_pred CcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCC
Q 048417 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192 (453)
Q Consensus 113 l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 192 (453)
.+..+++|++|++++|.+++ .+. +..+++|++|++++|...... ..+..+++|++|++++|
T Consensus 105 ----------------~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 105 ----------------ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165 (347)
T ss_dssp ----------------GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSS
T ss_pred ----------------HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCC
Confidence 12234455555555554442 222 444555555555555333222 22444555555555555
Q ss_pred ccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccc
Q 048417 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPR 272 (453)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 272 (453)
.+..... +..+++|+.|++++|.+.+. +. +..+++|+.+++++|.+....+ +..+++|++|++++|.+.+ .+.
T Consensus 166 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~ 238 (347)
T 4fmz_A 166 KVKDVTP-IANLTDLYSLSLNYNQIEDI-SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP 238 (347)
T ss_dssp CCCCCGG-GGGCTTCSEEECTTSCCCCC-GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG
T ss_pred CcCCchh-hccCCCCCEEEccCCccccc-cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc
Confidence 5443332 44555555555555555332 21 2345566666666665544332 5566677777777776652 221
Q ss_pred ccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCC
Q 048417 273 CIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLK 352 (453)
Q Consensus 273 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 352 (453)
+ ..+++|++|++++|.+++. ..+..++
T Consensus 239 -~--------------------------------------------------~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 239 -L--------------------------------------------------ANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp -G--------------------------------------------------TTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred -h--------------------------------------------------hcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 2 2244456666666666532 3455666
Q ss_pred CCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCC
Q 048417 353 VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432 (453)
Q Consensus 353 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~ 432 (453)
+|+.|++++|.+.+ + +.+..+++|++|++++|++.+..++.+..+++|++|++++|++++..| ...+++|+.+++++
T Consensus 266 ~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 266 KLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence 77777777776663 2 346666777777777777766666666677777777777777765444 56667777777777
Q ss_pred CCcc
Q 048417 433 NDLC 436 (453)
Q Consensus 433 n~l~ 436 (453)
|+++
T Consensus 343 N~i~ 346 (347)
T 4fmz_A 343 QVIK 346 (347)
T ss_dssp C---
T ss_pred hccc
Confidence 7543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=256.75 Aligned_cols=326 Identities=20% Similarity=0.192 Sum_probs=223.0
Q ss_pred CCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCcEEEccCCccccccccc---cccCcE
Q 048417 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSIALPLI---SSYLIE 110 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~ 110 (453)
.+++++.++++++.+ +.+|..++..+++|++|++++|.++..++ .+..+++|++|++++|.+....+.. +++|++
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 457888899988888 66777766888899999999888877544 6778888888888888877655433 456777
Q ss_pred EECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 111 LDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 111 L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
|++++|.+....... +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+++|+.|+++
T Consensus 122 L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 122 LVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS 194 (390)
T ss_dssp EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECC
T ss_pred EECCCCccCcCCHHH----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecc
Confidence 777777666322221 23577777777777777755566677777777777777777643 24556777777777
Q ss_pred CCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCc
Q 048417 191 KNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV 270 (453)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 270 (453)
+|.+.... ..++++.|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..
T Consensus 195 ~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 195 YNLLSTLA----IPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp SSCCSEEE----CCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cccccccC----CCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 77665432 334677777777766442 221 235677777777766553 35666677777777777666443
Q ss_pred ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccC
Q 048417 271 PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350 (453)
Q Consensus 271 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 350 (453)
|..+. .+++|++|++++|.++ ..+..+..
T Consensus 265 ~~~~~--------------------------------------------------~l~~L~~L~L~~n~l~-~~~~~~~~ 293 (390)
T 3o6n_A 265 YHPFV--------------------------------------------------KMQRLERLYISNNRLV-ALNLYGQP 293 (390)
T ss_dssp SGGGT--------------------------------------------------TCSSCCEEECCSSCCC-EEECSSSC
T ss_pred hhHcc--------------------------------------------------ccccCCEEECCCCcCc-ccCcccCC
Confidence 43332 3556788888888887 34555667
Q ss_pred CCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccC
Q 048417 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSF 430 (453)
Q Consensus 351 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l 430 (453)
+++|+.|++++|.+. .+|..+..+++|++|++++|++... + +..+++|++|++++|++.+.- ....+..+....+
T Consensus 294 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~ 368 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAV 368 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTB
T ss_pred CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh-HHHHHHHHHhhcc
Confidence 888999999988887 6677778888899999998888743 3 667888889999988887532 1133444444444
Q ss_pred CCCC
Q 048417 431 SGND 434 (453)
Q Consensus 431 ~~n~ 434 (453)
.+++
T Consensus 369 ~~~~ 372 (390)
T 3o6n_A 369 DDAD 372 (390)
T ss_dssp CCCC
T ss_pred cccC
Confidence 4443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=258.35 Aligned_cols=357 Identities=16% Similarity=0.113 Sum_probs=248.7
Q ss_pred ccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCcccc
Q 048417 20 LRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSI 99 (453)
Q Consensus 20 L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 99 (453)
...+......+..++++++|++|+++++.+++ +| .+ ..+++|++|++++|.+++.+ +..+++|++|++++|.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 25 AAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp HHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred HHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce
Confidence 33444445555678899999999999999955 56 44 88999999999999999863 8889999999999999988
Q ss_pred ccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCcccc
Q 048417 100 ALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLG 179 (453)
Q Consensus 100 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 179 (453)
.....+++|++|++++|.+.... ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.. .+.
T Consensus 100 ~~~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~ 167 (457)
T 3bz5_A 100 LDVTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVT 167 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred eecCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccc
Confidence 76566889999999999988631 4579999999999999985 33 788999999999999654444 477
Q ss_pred ccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEE
Q 048417 180 SLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIV 259 (453)
Q Consensus 180 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 259 (453)
.+++|+.|++++|.+++++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+ +| +..+++|++|
T Consensus 168 ~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred cCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 8999999999999998865 78889999999999998764 2 3468999999999999987 44 7889999999
Q ss_pred EccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc
Q 048417 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN 339 (453)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (453)
++++|.+.+.. ...+++|+.+++..+....+.... + ......+...+++|+.|++++|.
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~---n---------------~~~~~~~~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTH---N---------------TQLIYFQAEGCRKIKELDVTHNT 297 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTT---C---------------TTCCEEECTTCTTCCCCCCTTCT
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCC---C---------------ccCCcccccccccCCEEECCCCc
Confidence 99999998543 445666666655543311110000 0 00000011234555555555554
Q ss_pred CCCcCCc--------cccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc
Q 048417 340 FSGKIPL--------EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 340 l~~~~~~--------~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
..+.+|. .+..+++|+.|++++|++++ ++ ++.+++|+.|++++|++.+ ++.|..|++++|.
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~ 366 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNN 366 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTS
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCc
Confidence 3222221 23344455555555555553 21 4455555555555555542 1233344444444
Q ss_pred ccccCCCCcccceeecccCCCCCccCC
Q 048417 412 LTGKIPSSTQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 412 l~~~~~~~~~l~~L~~l~l~~n~l~~~ 438 (453)
+.+. +.+..|..+++++|.++|.
T Consensus 367 l~g~----~~~~~l~~l~l~~N~l~g~ 389 (457)
T 3bz5_A 367 FEAE----GQTITMPKETLTNNSLTIA 389 (457)
T ss_dssp EEEE----EEEEECCCBCCBTTBEEEE
T ss_pred EEec----ceeeecCccccccCcEEEE
Confidence 4443 3456778888888887654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=247.63 Aligned_cols=297 Identities=22% Similarity=0.274 Sum_probs=235.7
Q ss_pred hcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccE
Q 048417 59 SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQI 138 (453)
Q Consensus 59 ~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~ 138 (453)
..+++|++|+++++.+...+ .+..+++|++|++++|.+. .... +..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~---------------------~~~~------~~~l~~L~~ 92 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQIT---------------------DISP------LSNLVKLTN 92 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC---------------------CCGG------GTTCTTCCE
T ss_pred hhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccc---------------------cchh------hhcCCcCCE
Confidence 34567777777777666543 3555666666666665544 2111 346899999
Q ss_pred EeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCccc
Q 048417 139 LYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELV 218 (453)
Q Consensus 139 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 218 (453)
|++++|.++. ++ .+..+++|++|++++|.+.+. +. +..+++|+.|++++|........+..+++|+.|++++|.+.
T Consensus 93 L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 93 LYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp EECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC
Confidence 9999999984 44 589999999999999999854 33 88999999999999976666667889999999999999986
Q ss_pred ccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhh
Q 048417 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLY 298 (453)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~ 298 (453)
+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +
T Consensus 169 ~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~------------------------ 217 (347)
T 4fmz_A 169 DVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V------------------------ 217 (347)
T ss_dssp CCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G------------------------
T ss_pred Cchh---hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h------------------------
Confidence 5433 4578999999999999876543 8889999999999998873222 2
Q ss_pred hccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCC
Q 048417 299 ASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSL 378 (453)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 378 (453)
..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ + +.+..+++|
T Consensus 218 --------------------------~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 267 (347)
T 4fmz_A 218 --------------------------ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKL 267 (347)
T ss_dssp --------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred --------------------------hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence 335678999999999985443 8889999999999999984 3 568899999
Q ss_pred CEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCCCCCCCccC
Q 048417 379 ESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEHVSI 450 (453)
Q Consensus 379 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~~ 450 (453)
++|++++|.+.+. ..+..+++|++|++++|++++..+.. ..+++|+.+++++|++++.+.-..+++++++
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 338 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEE
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcccee
Confidence 9999999999854 56889999999999999999766553 7799999999999999888766667766654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=255.84 Aligned_cols=308 Identities=19% Similarity=0.209 Sum_probs=255.1
Q ss_pred cCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCc
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLE 88 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~ 88 (453)
..+++++.|+++++.++...+..|.++++|++|++++|.+.+..+..+ ..+++|++|++++|.++..++ .+.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 346899999999999977666668999999999999999955444454 899999999999999988654 478899999
Q ss_pred EEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 89 VLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 89 ~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
+|++++|.+....... +++|++|++++|.+....+. .+..+++|++|++++|.+++. + +..+++|+++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l 193 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANV 193 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEEC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh----hccCCCCCCEEECCCCcCCcc-c--cccccccceeec
Confidence 9999999998766543 67999999999998864443 345699999999999999843 3 677899999999
Q ss_pred ccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
++|.+.. +...++|+.|++++|.+...+.. ..++|+.|++++|.+.+. + .+..+++|++|++++|.+.+.
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-A--WLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCEE
T ss_pred ccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-H--HHcCCCCccEEECCCCcCCCc
Confidence 9998763 34456899999999999877543 347999999999998763 2 345789999999999999988
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
.+..+..+++|++|++++|.+. .++..+ .
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~--------------------------------------------------~ 292 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLV-ALNLYG--------------------------------------------------Q 292 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCC-EEECSS--------------------------------------------------S
T ss_pred ChhHccccccCCEEECCCCcCc-ccCccc--------------------------------------------------C
Confidence 8889999999999999999987 333322 2
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 390 (453)
.+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .++ +..+++|+.|++++|++..
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccc
Confidence 3566899999999998 56767888999999999999998 443 6789999999999999874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=249.53 Aligned_cols=258 Identities=29% Similarity=0.518 Sum_probs=220.5
Q ss_pred CcccEEeccCCCCCC--CCchhhhcCCcccEEEccc-CccCCCCCccccccccccEEEccCCcccc-ccccccccCCCCE
Q 048417 134 NKWQILYLSGNFLQG--ELPDCWMNYQNLMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLCG-TIHSLENCTALMT 209 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~ 209 (453)
.+++.|+++++.+++ .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+ .+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888887 6788888888899999885 78877888888888889999988888874 4467788888888
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCC-CccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+..++ .|++|++++|.+.+.+|..+..+
T Consensus 130 L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l----------- 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------- 197 (313)
T ss_dssp EECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred EeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence 8888888876666654 4688888888888888877888888887 89999999998876666655432
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
. |++|++++|.+++..+..+..+++|+.|++++|.+.+.+
T Consensus 198 ---------------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 198 ---------------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp ---------------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred ---------------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 2 788999999998888889999999999999999998555
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC-ccCCCCCCCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLSGNCS 445 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~~~c~ 445 (453)
+. +..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|....+++|+.+++++|+ +||.|+. .|.
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence 54 788999999999999999899999999999999999999999999999999999999999999 9999887 473
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=265.14 Aligned_cols=330 Identities=20% Similarity=0.199 Sum_probs=235.5
Q ss_pred CCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCcEEEccCCccccccccc---cccCcE
Q 048417 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSIALPLI---SSYLIE 110 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~ 110 (453)
.+++++.++++++.+ +.+|..++..+++|++|++++|.++..++ .+..+++|++|++++|.+....+.. +++|++
T Consensus 49 ~l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 357889999999988 66777777889999999999999887554 7888889999999999888765543 567777
Q ss_pred EECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 111 LDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 111 L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
|++++|.+....... +..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.. +..+++|+.|+++
T Consensus 128 L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 128 LVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred EEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 777777776433222 235778888888888777666666777788888888888777432 4556777788887
Q ss_pred CCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCc
Q 048417 191 KNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV 270 (453)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 270 (453)
+|.+.+. ...++|+.|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 201 ~n~l~~l----~~~~~L~~L~ls~n~l~~~-~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 201 YNLLSTL----AIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SSCCSEE----ECCTTCSEEECCSSCCCEE-ECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cCccccc----cCCchhheeeccCCccccc-ccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence 7766543 2345677777777776442 211 235677777777776652 45666777777777777776544
Q ss_pred ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccC
Q 048417 271 PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350 (453)
Q Consensus 271 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 350 (453)
|..+. .+++|+.|++++|.+++ +|..+..
T Consensus 271 ~~~~~--------------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~ 299 (597)
T 3oja_B 271 YHPFV--------------------------------------------------KMQRLERLYISNNRLVA-LNLYGQP 299 (597)
T ss_dssp SGGGT--------------------------------------------------TCSSCCEEECTTSCCCE-EECSSSC
T ss_pred HHHhc--------------------------------------------------CccCCCEEECCCCCCCC-CCccccc
Confidence 44443 35567889999998874 5666677
Q ss_pred CCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccC
Q 048417 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSF 430 (453)
Q Consensus 351 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l 430 (453)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+... + +..+++|+.|++++|++.+... ...+..+....+
T Consensus 300 l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~ 374 (597)
T 3oja_B 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAV 374 (597)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTB
T ss_pred CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhcc
Confidence 889999999999888 7777788889999999999988844 3 6678899999999999885421 123444444445
Q ss_pred CCCC-ccCC
Q 048417 431 SGND-LCRA 438 (453)
Q Consensus 431 ~~n~-l~~~ 438 (453)
.+++ .|+.
T Consensus 375 ~~~~~~C~~ 383 (597)
T 3oja_B 375 DDADQHCKI 383 (597)
T ss_dssp CCCCCCCCT
T ss_pred ccccccCCc
Confidence 5554 5554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=262.35 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=256.3
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcC-ccCCCCCcE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEV 89 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~-l~~~~~L~~ 89 (453)
.+.+++.++++++.++...+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++..++. +.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 46789999999999977766778999999999999999966555555 8999999999999999986654 688999999
Q ss_pred EEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 90 LSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 90 L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
|++++|.+...+... +++|++|++++|.+....+.. +..+++|++|++++|.+++. + +..+++|++|+++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~ 200 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVS 200 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh----hhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcc
Confidence 999999999766543 679999999999998654443 44699999999999999843 3 5678999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
+|.+.+ +...+.|+.|++++|.+......+ .++|+.|++++|.+.+. . .+..+++|+.|++++|.+.+..
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEE
T ss_pred cCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--h-hhccCCCCCEEECCCCccCCCC
Confidence 998763 345578999999999998766443 36899999999998763 2 2357899999999999999988
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhh
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT 326 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (453)
|..+..+++|+.|++++|.+.+ +|..+. .
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--------------------------------------------------~ 299 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQ--------------------------------------------------P 299 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCE-EECSSS--------------------------------------------------C
T ss_pred HHHhcCccCCCEEECCCCCCCC-CCcccc--------------------------------------------------c
Confidence 9999999999999999999873 343322 2
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 390 (453)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++..
T Consensus 300 l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence 566899999999998 677778889999999999999984 33 6778999999999999864
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=269.51 Aligned_cols=381 Identities=15% Similarity=0.124 Sum_probs=202.6
Q ss_pred CCcccEEEccCCcCCCCCCc-cccCCCcccEEEcCCCccccc----chhhHhhcCCCeEEEEccCCcccCC-CcCc-cCC
Q 048417 12 PFQLATLGLRHCHLGSRFPS-WLYSQKHLNYLDLSYSGIIGT----IPNIFWSSASQIYVLDLSFNQIHGQ-IPNL-TNA 84 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l-~~~ 84 (453)
+++|++|+++++.++..... .+..+++|++|++++|.+.+. ++..+ ..+++|++|++++|.+... ...+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35677888887777543322 266777888888888877432 23333 5667788888887776541 1111 112
Q ss_pred C----CCcEEEccCCcccccc----c---cccccCcEEECcCCCCCCchhhhhhhhhc-ccCcccEEeccCCCCCCCC--
Q 048417 85 A----QLEVLSLGSNSFSIAL----P---LISSYLIELDFSNNSISGSIFHFICYRAN-ELNKWQILYLSGNFLQGEL-- 150 (453)
Q Consensus 85 ~----~L~~L~l~~~~~~~~~----~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-- 150 (453)
. +|++|++++|.+.... + ..+++|++|++++|.+.......+...+. ..++|++|++++|.++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 2 5777777777665321 1 12445666666666655444444433321 2345666666666555322
Q ss_pred --chhhhcCCcccEEEcccCccCCCCCcccc-----ccccccEEEccCCccccc-----cccccccCCCCEEeCCCCccc
Q 048417 151 --PDCWMNYQNLMILDLSNNKFTGNLPISLG-----SLISLQSLHLRKNNLCGT-----IHSLENCTALMTLDVGENELV 218 (453)
Q Consensus 151 --~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~ 218 (453)
+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.++.. ...+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 33344455666666666655432222221 133555555555555431 233344455555555555443
Q ss_pred ccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCC----cccccccccccceeccccCcchhhh
Q 048417 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE----VPRCIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
+.....+. +..+..+++|++|++++|.++.. ++..+..+++|+.|+++++.+....
T Consensus 241 ~~~~~~l~--------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 241 DVGMAELC--------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHHHH--------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred hHHHHHHH--------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 32111111 11111244455555555544422 3334444455555555544322111
Q ss_pred hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc----CCccccCCCCCcEEEcCCccCCCCCCc
Q 048417 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK----IPLEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
..... .......++|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+.
T Consensus 301 ~~~l~---------------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 301 ARLLC---------------------ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHHH---------------------HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HHHHH---------------------HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 11000 00001235688888888887654 344556678888888888887754433
Q ss_pred cccC-----CCCCCEEEcCCCcCCC----CCCccccCCCCCCEEEccCCccccc--------CCC-CcccceeecccCCC
Q 048417 371 SVGT-----MRSLESIDFSLNQLSG----EIPQSMSSLKFLNHLNLSNNNLTGK--------IPS-STQLQSFDASSFSG 432 (453)
Q Consensus 371 ~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~--------~~~-~~~l~~L~~l~l~~ 432 (453)
.+.. .++|++|++++|.+++ .++..+..+++|++|++++|++++. ++. ...+..|+..+++.
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 3322 6688888888888875 5666777788888888888887743 222 23455555555544
Q ss_pred CC
Q 048417 433 ND 434 (453)
Q Consensus 433 n~ 434 (453)
++
T Consensus 440 ~~ 441 (461)
T 1z7x_W 440 SE 441 (461)
T ss_dssp CH
T ss_pred CH
Confidence 43
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-32 Score=269.39 Aligned_cols=360 Identities=18% Similarity=0.087 Sum_probs=264.5
Q ss_pred CcCCCcccEEEccCCcCCC----CCCccccCCCcccEEEcCCCcccccchhhHhhcCC----CeEEEEccCCcccC----
Q 048417 9 WIPPFQLATLGLRHCHLGS----RFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSAS----QIYVLDLSFNQIHG---- 76 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~ls~~~~~~---- 76 (453)
+..+++|++|++++|.++. .++.++..+++|++|++++|.+.+..+..++..++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 5568899999999999864 34567888999999999999997766666666676 79999999999884
Q ss_pred -CCcCccCCCCCcEEEccCCcccccccc--------ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC
Q 048417 77 -QIPNLTNAAQLEVLSLGSNSFSIALPL--------ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 77 -~~~~l~~~~~L~~L~l~~~~~~~~~~~--------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 147 (453)
.+..+..+++|++|++++|.+...... ..++|++|++++|.++......++..+..+++|++|++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 355678899999999999998753322 13479999999999998887788888888999999999999987
Q ss_pred CCCchhhh-----cCCcccEEEcccCccCCC----CCccccccccccEEEccCCcccccc-----c-cccccCCCCEEeC
Q 048417 148 GELPDCWM-----NYQNLMILDLSNNKFTGN----LPISLGSLISLQSLHLRKNNLCGTI-----H-SLENCTALMTLDV 212 (453)
Q Consensus 148 ~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-----~-~~~~~~~L~~L~l 212 (453)
...+..+. ..++|++|++++|.+.+. ++..+..+++|+.|++++|.+.... + ....+++|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 44333333 256999999999998853 3556677899999999999886532 2 2235789999999
Q ss_pred CCCcccccCch---HHHhccCcceEEEecCCcccccCchhhc-----CCCCccEEEccCCcCCCCcccccccccccceec
Q 048417 213 GENELVENIPT---WIRERFSRIVVLILRSNKFYNLLPKELC-----DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 213 ~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 284 (453)
++|.+...... .....+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.....+
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l---------- 333 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF---------- 333 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH----------
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH----------
Confidence 99988654211 1223578899999999987654433333 23688999999888764321111
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccC-----CCCCcEEEc
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN-----LKVLQSVNL 359 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l 359 (453)
...+..+++|++|++++|.+++..+..+.. .++|+.|++
T Consensus 334 ------------------------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 334 ------------------------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp ------------------------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred ------------------------------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 112234567888888888776543333322 568888888
Q ss_pred CCccCCC----CCCccccCCCCCCEEEcCCCcCCCCCCcc----c-cCCCCCCEEEccCCcccc
Q 048417 360 SNNFFTG----RIPESVGTMRSLESIDFSLNQLSGEIPQS----M-SSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 360 ~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l-~~l~~L~~L~l~~n~l~~ 414 (453)
++|.+++ .++..+..+++|++|++++|++.+..... + ....+|+.|.+.++.+..
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 8888875 56677778888999999988887432111 1 124568888888777653
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=222.01 Aligned_cols=288 Identities=18% Similarity=0.170 Sum_probs=144.4
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEEc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLSL 92 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~l 92 (453)
+++.++++++.++. +|..+. +++++|++++|.+++..+..+ ..+++|++|++++|.++.. +..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45556665555532 333222 455556666665533222222 5555566666665555543 334555555555555
Q ss_pred cCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCC
Q 048417 93 GSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTG 172 (453)
Q Consensus 93 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 172 (453)
++|.+.......+ ++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 108 s~n~l~~l~~~~~----------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 108 SKNQLKELPEKMP----------------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCSBCCSSCC----------------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCCccChhhc----------------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 5555443222222 344444444444443333334444444444444444431
Q ss_pred --CCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhh
Q 048417 173 --NLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250 (453)
Q Consensus 173 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 250 (453)
..+..+..+++|+.|++++|.++.++..+ .++|++|++++|.+.+..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---------------------------~~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGL---------------------------PPSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---------------------------CTTCSEEECTTSCCCEECTGGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCccc---------------------------cccCCEEECCCCcCCccCHHHh
Confidence 22333444444444444444443322111 1345555555555544445566
Q ss_pred cCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcc
Q 048417 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330 (453)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (453)
..+++|++|++++|.+.+..+..+. .+++|
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~--------------------------------------------------~l~~L 242 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLA--------------------------------------------------NTPHL 242 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGG--------------------------------------------------GSTTC
T ss_pred cCCCCCCEEECCCCcCceeChhhcc--------------------------------------------------CCCCC
Confidence 6666777777777766533222222 23445
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC------CCCCCEEEcCCCcCCC--CCCccccCCCCC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT------MRSLESIDFSLNQLSG--EIPQSMSSLKFL 402 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~l~~l~~L 402 (453)
++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.. .+.++.|++++|++.. ..|..+..++.+
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 66666666665 55555666666777777777666443344422 3566677777776642 344566666777
Q ss_pred CEEEccCCc
Q 048417 403 NHLNLSNNN 411 (453)
Q Consensus 403 ~~L~l~~n~ 411 (453)
+.+++++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 777776663
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=222.91 Aligned_cols=287 Identities=17% Similarity=0.209 Sum_probs=151.0
Q ss_pred CCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
+++.++++++.+...+....+.+++|++++|.+...... .+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 445555555544433333333444444444444432221 2234566666666666665444555566666666666
Q ss_pred ccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCccccc-CchHHHhccCcceEEEecCCccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVEN-IPTWIRERFSRIVVLILRSNKFY 243 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 243 (453)
++|.+. .+|..+. ++|+.|++++|.+.... ..+..+++|+.|++++|.+... .....+..+++|++|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666555 3333322 45555555555555444 2344555555555555544320 11111233444444444444443
Q ss_pred ccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchh
Q 048417 244 NLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKY 323 (453)
Q Consensus 244 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (453)
.. +..+ .++|++|++++|.+.+..+..+
T Consensus 185 ~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~------------------------------------------------- 212 (330)
T 1xku_A 185 TI-PQGL--PPSLTELHLDGNKITKVDAASL------------------------------------------------- 212 (330)
T ss_dssp SC-CSSC--CTTCSEEECTTSCCCEECTGGG-------------------------------------------------
T ss_pred cC-Cccc--cccCCEEECCCCcCCccCHHHh-------------------------------------------------
Confidence 31 2111 1344445555444442222222
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccC-----
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSS----- 398 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----- 398 (453)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .+|.++..+++|++|++++|++++..+..|..
T Consensus 213 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 213 -KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp -TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred -cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 23455677777777776555556777777777777777777 66666777777777777777777555555533
Q ss_pred -CCCCCEEEccCCcccc--cCC-CCcccceeecccCCCC
Q 048417 399 -LKFLNHLNLSNNNLTG--KIP-SSTQLQSFDASSFSGN 433 (453)
Q Consensus 399 -l~~L~~L~l~~n~l~~--~~~-~~~~l~~L~~l~l~~n 433 (453)
.+.|+.|++++|++.. ..| ....+.+++.+++++|
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3567777777777652 112 2255666777777766
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-30 Score=263.20 Aligned_cols=404 Identities=11% Similarity=-0.022 Sum_probs=239.3
Q ss_pred CcCCCcccEEEccCCcCC---CCCCcc------------ccCCCcccEEEcCCCcccccchhhHhhcCCC-eEEEEccCC
Q 048417 9 WIPPFQLATLGLRHCHLG---SRFPSW------------LYSQKHLNYLDLSYSGIIGTIPNIFWSSASQ-IYVLDLSFN 72 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~---~~~~~~------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~ls~~ 72 (453)
+..+++|++|++++|... +..|.. ...+++|++|+++++.+++..+..+...++. |++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 456888999999886531 111111 1278999999999998866666665343555 999999988
Q ss_pred c-ccC--CCcCccCCCCCcEEEccCCcccccc-------ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEecc
Q 048417 73 Q-IHG--QIPNLTNAAQLEVLSLGSNSFSIAL-------PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142 (453)
Q Consensus 73 ~-~~~--~~~~l~~~~~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 142 (453)
. ++. .......+++|++|++++|.+.... ...+++|++|+++++.+.+.....+...+..+++|++|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 6 221 1122347789999999999876542 22367999999999988755555666666779999999999
Q ss_pred CCCCCCCCchhhhcCCcccEEEcccCccC---CCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccc
Q 048417 143 GNFLQGELPDCWMNYQNLMILDLSNNKFT---GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE 219 (453)
Q Consensus 143 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (453)
+|.+. ..+..+..+++|++|+++..... ...+..+..+++|+.+++.++.....+..+..+++|++|++++|.+.+
T Consensus 229 ~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 229 DFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp SCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred CccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 99887 46777888999999998864322 122334566777888888776555555666677788888888877654
Q ss_pred cCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC-----------CcCCCC-cccccccccccceecccc
Q 048417 220 NIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD-----------NNLSGE-VPRCIHNLRAMVTMNSHA 287 (453)
Q Consensus 220 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~~~~L~~l~i~~ 287 (453)
.....+...+++|+.|++.++......+.....+++|++|++++ +.+++. ++.....+++|+.|++..
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 44334445677888888873322222333345677788888873 334322 122244567777777744
Q ss_pred CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecC----CCcCCCc-----CCccccCCCCCcEEE
Q 048417 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS----KNNFSGK-----IPLEVTNLKVLQSVN 358 (453)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~l~~~-----~~~~~~~~~~L~~L~ 358 (453)
+........... ..+++|+.|+++ .+.+++. ++..+..+++|+.|+
T Consensus 388 ~~l~~~~~~~l~-------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 388 SDITNESLESIG-------------------------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp SCCCHHHHHHHH-------------------------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCccHHHHHHHH-------------------------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 433221111000 124455555553 3334321 112233455555555
Q ss_pred cCCcc--CCCCCCccc-cCCCCCCEEEcCCCcCCC-CCCccccCCCCCCEEEccCCccccc-CCCC-cccceeecccCCC
Q 048417 359 LSNNF--FTGRIPESV-GTMRSLESIDFSLNQLSG-EIPQSMSSLKFLNHLNLSNNNLTGK-IPSS-TQLQSFDASSFSG 432 (453)
Q Consensus 359 l~~n~--~~~~~~~~l-~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~-~~l~~L~~l~l~~ 432 (453)
+++|. +++..+..+ ..+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.. ..+++|+.+++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 54332 332222222 225555555555555543 1233334555555555555554421 1211 3455555555555
Q ss_pred CCccCC
Q 048417 433 NDLCRA 438 (453)
Q Consensus 433 n~l~~~ 438 (453)
|++++.
T Consensus 523 n~it~~ 528 (592)
T 3ogk_B 523 YRASMT 528 (592)
T ss_dssp CBCCTT
T ss_pred CcCCHH
Confidence 555444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-28 Score=224.54 Aligned_cols=243 Identities=18% Similarity=0.228 Sum_probs=125.4
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTL 210 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 210 (453)
.+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.... ..+..+++|+.|
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 4555666666665555444555555566666666665555 3333322 45555555555555444 234555555555
Q ss_pred eCCCCcccc--cCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 211 DVGENELVE--NIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 211 ~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
++++|.+.. ..+. .+..+ +|+.|++++|.+.. +|..+. ++|++|++++|.+.+..+..+..
T Consensus 153 ~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------ 215 (332)
T 2ft3_A 153 EMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------ 215 (332)
T ss_dssp ECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT------------
T ss_pred ECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC------------
Confidence 555555432 1111 11122 44445555544433 222221 45555555555555333333322
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
+++|+.|++++|.+++..+.++..+++|+.|++++|.+. .+
T Consensus 216 --------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 216 --------------------------------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp --------------------------------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred --------------------------------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 344555666666666555555666666666666666666 55
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccC------CCCCCEEEccCCccc--ccCCC-CcccceeecccCCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSS------LKFLNHLNLSNNNLT--GKIPS-STQLQSFDASSFSGN 433 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~-~~~l~~L~~l~l~~n 433 (453)
|..+..+++|++|++++|++++..+..+.. .+.|+.|++++|++. +..+. ...+++|+.+++++|
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 656666666666666666666544444443 245666666666655 22222 245666666666655
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=222.65 Aligned_cols=286 Identities=22% Similarity=0.244 Sum_probs=198.0
Q ss_pred cccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccCCCCCcEEEccCCccccccccccccCcEEECcCC
Q 048417 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNN 116 (453)
Q Consensus 38 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~ 116 (453)
+++.++++++.+ ..+|..+ .++|++|++++|.++... ..+.++++|++|++++|.+....+
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 95 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-------------- 95 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------------
T ss_pred cCCEEECCCCCc-cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------------
Confidence 567777777776 4555543 256777777777766543 356666677777766666553322
Q ss_pred CCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccc
Q 048417 117 SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196 (453)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 196 (453)
..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+....+..|..+++|+.|++++|.++.
T Consensus 96 -----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 96 -----------KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp -----------GGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred -----------hHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 22335677777777777766 4444333 677777777777775555556777777777777777653
Q ss_pred --c-cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccc
Q 048417 197 --T-IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273 (453)
Q Consensus 197 --~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 273 (453)
. ...+..+ +|+.|++++|.+.+ ++..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 2 2444444 77778888777754 44332 267888888888887777778888999999999999888544444
Q ss_pred cccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCC
Q 048417 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKV 353 (453)
Q Consensus 274 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 353 (453)
+. .+++|++|++++|.++ .+|..+..+++
T Consensus 237 ~~--------------------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 237 LS--------------------------------------------------FLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp GG--------------------------------------------------GCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred hh--------------------------------------------------CCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 43 3455788888888887 67777888999
Q ss_pred CcEEEcCCccCCCCCCccccC------CCCCCEEEcCCCcCC--CCCCccccCCCCCCEEEccCCc
Q 048417 354 LQSVNLSNNFFTGRIPESVGT------MRSLESIDFSLNQLS--GEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 354 L~~L~l~~n~~~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
|+.|++++|.+++..+..+.. .++|+.|++++|++. +..+..+..+++|+.+++++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999998655555543 467899999999887 5677788899999999998875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=225.94 Aligned_cols=251 Identities=26% Similarity=0.397 Sum_probs=208.9
Q ss_pred ccCcEEECcCCCCCC--chhhhhhhhhcccCcccEEeccC-CCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccc
Q 048417 106 SYLIELDFSNNSISG--SIFHFICYRANELNKWQILYLSG-NFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182 (453)
Q Consensus 106 ~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 182 (453)
.+++.|+++++.+.+ ..+ ..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~----~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP----SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC----GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccC----hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 356666666666664 333 3444689999999995 888888888899999999999999999888888899999
Q ss_pred cccEEEccCCcccc-ccccccccCCCCEEeCCCCcccccCchHHHhccC-cceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 183 SLQSLHLRKNNLCG-TIHSLENCTALMTLDVGENELVENIPTWIRERFS-RIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 183 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
+|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+..+. .++ .|++|++++|.+.+..+..+..++ |++|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 99999999999884 447788899999999999999877777665 455 899999999999888888888887 99999
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 340 (453)
+++|.+.+..|..+.. +++|+.|++++|.+
T Consensus 204 Ls~N~l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGS--------------------------------------------------DKNTQKIHLAKNSL 233 (313)
T ss_dssp CCSSEEEECCGGGCCT--------------------------------------------------TSCCSEEECCSSEE
T ss_pred CcCCcccCcCCHHHhc--------------------------------------------------CCCCCEEECCCCce
Confidence 9999998666655544 45578888888888
Q ss_pred CCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc-ccc
Q 048417 341 SGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN-LTG 414 (453)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~ 414 (453)
++..+. +..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 755554 777899999999999999889999999999999999999999888876 889999999999998 554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=217.78 Aligned_cols=238 Identities=18% Similarity=0.144 Sum_probs=155.2
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccc--cccccCCCCE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMT 209 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~ 209 (453)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++.++. .+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 46667777777776665555556666777777777776664433346666677777777776665543 4556666666
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCc
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~ 289 (453)
|++++|......+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~---------------- 216 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEI---------------- 216 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHH----------------
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhh----------------
Confidence 6666663222222222334566666666666665555566666666666666666654 22211
Q ss_pred chhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccc---cCCCCCcEEEcCCccCCC
Q 048417 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV---TNLKVLQSVNLSNNFFTG 366 (453)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~n~~~~ 366 (453)
....+++|++|++++|.+++..+..+ ...+.++.++++++.+.+
T Consensus 217 ---------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 217 ---------------------------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp ---------------------------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred ---------------------------------hhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 11235678888888888875444333 235678888888887764
Q ss_pred ----CCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 367 ----RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 367 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+|+++..+++|++|++++|+++...+..+..+++|++|++++|++.+..|.+
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 35677889999999999999999443344689999999999999999876644
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=212.38 Aligned_cols=250 Identities=20% Similarity=0.186 Sum_probs=161.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC--CCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN--LPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
+++++|++++|.++...+..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+..++..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3455555555555522222345555555555555555421 12333445556666666665555554455566666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCC-CcccccccccccceeccccCcc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG-EVPRCIHNLRAMVTMNSHAGKA 290 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~i~~~~~ 290 (453)
+++|.+.+..+...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------- 171 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---------------- 171 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC----------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH----------------
Confidence 666655443222233455666666666666666566666777777777777777653 233333
Q ss_pred hhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCc
Q 048417 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 172 ----------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 172 ----------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ----------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ----------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 2356678899999988877788888899999999999999866666
Q ss_pred cccCCCCCCEEEcCCCcCCCCCCccccCCC-CCCEEEccCCcccccCCCC---cccceeecccCCCC
Q 048417 371 SVGTMRSLESIDFSLNQLSGEIPQSMSSLK-FLNHLNLSNNNLTGKIPSS---TQLQSFDASSFSGN 433 (453)
Q Consensus 371 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~---~~l~~L~~l~l~~n 433 (453)
.+..+++|++|++++|++.+..+..+..++ +|++|++++|++++..+.. ..+...+.+.+..+
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~ 284 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccc
Confidence 788899999999999999988888888885 8999999999998653321 33444444444433
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-28 Score=244.84 Aligned_cols=394 Identities=11% Similarity=-0.002 Sum_probs=275.4
Q ss_pred CCCcccEEEccCCcCCCCCCccccC-CCc-ccEEEcCCCc-ccccchhhHhhcCCCeEEEEccCCcccCCCc-----Ccc
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYS-QKH-LNYLDLSYSG-IIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-----NLT 82 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-----~l~ 82 (453)
.+++|++|+|++|.+++..+..+.. +++ |++|+++++. +.......+...+++|++|++++|.+++... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6899999999999887655555655 445 9999999986 3222222333688999999999998765321 235
Q ss_pred CCCCCcEEEccCCcccccc----c---cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC---CCCch
Q 048417 83 NAAQLEVLSLGSNSFSIAL----P---LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ---GELPD 152 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~----~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~ 152 (453)
.+++|+.|++++|.+.... . ..+++|++|++++|.+.+ +...+..+++|++|+++..... ...+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 6789999999999987322 1 236799999999988764 3344557999999999864322 22334
Q ss_pred hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc--ccccccCCCCEEeCCCCcccccCchHHHhccC
Q 048417 153 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFS 230 (453)
Q Consensus 153 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 230 (453)
.+..+++|+.+.++++... ..|..+..+++|++|++++|.++... ..+..+++|+.|+++ +.+.+.....+...++
T Consensus 265 ~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred HhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 5677899999999886444 56677788999999999999865433 446789999999998 4444444445556789
Q ss_pred cceEEEecC-----------CcccccC-chhhcCCCCccEEEccCCcCCCCccccccc-ccccceeccccCc----chhh
Q 048417 231 RIVVLILRS-----------NKFYNLL-PKELCDLAFLQIVDLADNNLSGEVPRCIHN-LRAMVTMNSHAGK----AIQY 293 (453)
Q Consensus 231 ~L~~L~l~~-----------~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~i~~~~----~~~~ 293 (453)
+|++|++.+ +.++... ......+++|++|++..+.+++..+..+.. +++|+.|++..+. ....
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 999999993 4444332 223456899999999888888777766665 8899999987432 1111
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc--CCCcCCcccc-CCCCCcEEEcCCccCCCC-CC
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN--FSGKIPLEVT-NLKVLQSVNLSNNFFTGR-IP 369 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~n~~~~~-~~ 369 (453)
+.. . ........+++|++|+++.|. +++..+..+. .+++|+.|++++|.+++. ++
T Consensus 423 p~~-~--------------------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 423 PLD-N--------------------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCH-H--------------------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred hHH-H--------------------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 000 0 001113457889999997643 5544443343 478999999999998753 34
Q ss_pred ccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEEEccCCccccc-CCCC-cccceeecccCCC
Q 048417 370 ESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHLNLSNNNLTGK-IPSS-TQLQSFDASSFSG 432 (453)
Q Consensus 370 ~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~-~~~~-~~l~~L~~l~l~~ 432 (453)
..+..+++|++|++++|.+++. ++.....+++|++|++++|++++. +..+ ..++.+....+..
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 4557889999999999997643 344456789999999999998753 1112 3455555555543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=210.29 Aligned_cols=227 Identities=16% Similarity=0.184 Sum_probs=167.1
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeC
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDV 212 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 212 (453)
.++++.|+++++.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+..++..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 578888899888888 67777888888999999988888 7777888888899999988888877777888888888888
Q ss_pred CCCcccccCchHHH--------hccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceec
Q 048417 213 GENELVENIPTWIR--------ERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 213 ~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 284 (453)
++|.+.+..|..+. ..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l---------- 225 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI---------- 225 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG----------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh----------
Confidence 88776666665432 12455555555555554 34445555555555555555555 233222
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccC
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 364 (453)
..+++|++|++++|++.+..|..+..+++|+.|++++|.+
T Consensus 226 ----------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 226 ----------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp ----------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred ----------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 2345577788888777777777777888888888888877
Q ss_pred CCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc
Q 048417 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 365 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 413 (453)
.+.+|..+..+++|++|++++|.+.+.+|+.+..+++|+.+++..+.+.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777877888888888888888888788888888888888888766554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=216.05 Aligned_cols=228 Identities=22% Similarity=0.228 Sum_probs=137.8
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l 212 (453)
++++.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.++.+. ..+..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666666666665444455566666666666666665554455556666666666666665554 24555566666666
Q ss_pred CCCcccccCchHHHhccCcceEEEecCCc-ccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 213 GENELVENIPTWIRERFSRIVVLILRSNK-FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
++|.+.. ++...+..+++|++|++++|. +....+..+..+++|++|++++|.+. .+|.
T Consensus 144 ~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~------------------- 202 (440)
T 3zyj_A 144 RNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN------------------- 202 (440)
T ss_dssp CSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-------------------
T ss_pred CCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-------------------
Confidence 6665543 222233345555555555532 22222334555555555555555554 2221
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 203 --------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 203 --------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp --------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS
T ss_pred --------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh
Confidence 123455777777777777666667777777777777777777666666
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
|..+++|++|++++|+++...+..+..+++|+.|++++|++..
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7777777777777777776666667777777777777777764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=207.45 Aligned_cols=244 Identities=18% Similarity=0.193 Sum_probs=191.1
Q ss_pred cEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccc---cccccccCCCCEEeCC
Q 048417 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT---IHSLENCTALMTLDVG 213 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~ 213 (453)
+.++++++.++ .+|..+ .+++++|++++|.+....+..|..+++|+.|++++|.+... ...+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 56777777777 556533 36888999999988855445578888999999998888654 2455567888888888
Q ss_pred CCcccccCchHHHhccCcceEEEecCCcccccCc-hhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchh
Q 048417 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQ 292 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~ 292 (453)
+|.+.. .+.. +..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 87 ~n~i~~-l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------- 147 (306)
T 2z66_A 87 FNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----------------- 147 (306)
T ss_dssp SCSEEE-EEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-----------------
T ss_pred CCcccc-Chhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-----------------
Confidence 887754 3333 2357788888888887766544 4677778888888888877644443332
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC-cCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 293 YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
.+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+..
T Consensus 148 ---------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 148 ---------------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp ---------------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ---------------------------------cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 35668999999999875 57888999999999999999999777889
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-ccc-ceeecccCCCCCc
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQL-QSFDASSFSGNDL 435 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l-~~L~~l~l~~n~l 435 (453)
+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+.. ..+ ++|+.+++++|++
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999999999999999999777778999999999999999999876654 566 4899999999974
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-29 Score=250.03 Aligned_cols=401 Identities=13% Similarity=0.024 Sum_probs=215.7
Q ss_pred cCCCcccEEEccCCcCCCCC---C------------ccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCC-c
Q 048417 10 IPPFQLATLGLRHCHLGSRF---P------------SWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN-Q 73 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~---~------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~ 73 (453)
..+++|++|+++++...... + .....+++|++|+++++.+++..+..+...+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 45678888888887531111 1 112467788888888888766666666446788888888887 4
Q ss_pred ccC--CCcCccCCCCCcEEEccCCcccccccc-------ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCC
Q 048417 74 IHG--QIPNLTNAAQLEVLSLGSNSFSIALPL-------ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGN 144 (453)
Q Consensus 74 ~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 144 (453)
++. ......++++|++|++++|.+...... .+++|++|+++++. .......+...+..+++|++|++++|
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 443 222234677888888888876543322 34578888888776 22222333333345788888888877
Q ss_pred CCCCCCchhhhcCCcccEEEcccCcc-------C-------------------C----CCCccccccccccEEEccCCcc
Q 048417 145 FLQGELPDCWMNYQNLMILDLSNNKF-------T-------------------G----NLPISLGSLISLQSLHLRKNNL 194 (453)
Q Consensus 145 ~~~~~~~~~l~~l~~L~~L~l~~~~~-------~-------------------~----~~~~~l~~l~~L~~L~l~~~~~ 194 (453)
.....++..+..+++|++|+++.+.. . . .++..+..+++|+.|++++|.+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 32223555666677777777554421 1 0 1111122345566666666554
Q ss_pred cccc--ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecC---------CcccccCchhh-cCCCCccEEEcc
Q 048417 195 CGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRS---------NKFYNLLPKEL-CDLAFLQIVDLA 262 (453)
Q Consensus 195 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~ 262 (453)
+... ..+..+++|+.|++++| +.......+...+++|++|++.. +.+++.....+ ..+++|++|.+.
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 3221 22345566666666655 32222222333455666666522 22222111122 235566666555
Q ss_pred CCcCCCCcccccc-cccccceeccc--c---CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecC
Q 048417 263 DNNLSGEVPRCIH-NLRAMVTMNSH--A---GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336 (453)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~L~~l~i~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (453)
.+.+++..+..+. .+++|+.|++. + +..++..... .........+++|+.|+++
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~--------------------~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD--------------------IGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH--------------------HHHHHHHHHCTTCCEEECC
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh--------------------hHHHHHHhhCCCccEEeec
Confidence 5555543333333 35566666655 1 1111100000 0001112446677888876
Q ss_pred CCcCCCcCCccccC-CCCCcEEEcCCccCCCCCCccc-cCCCCCCEEEcCCCcCCCCCCc-cccCCCCCCEEEccCCccc
Q 048417 337 KNNFSGKIPLEVTN-LKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQ-SMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 337 ~~~l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~ 413 (453)
+ .+++..+..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|++|++++|+++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6 554443334433 6778888888777764433333 5577788888888877533222 3445777888888888774
Q ss_pred cc-CCCC-cccceeecccCCCC
Q 048417 414 GK-IPSS-TQLQSFDASSFSGN 433 (453)
Q Consensus 414 ~~-~~~~-~~l~~L~~l~l~~n 433 (453)
.. +..+ ..++.|+...+..+
T Consensus 520 ~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHHHhCCCCEEEEecCC
Confidence 21 1111 34455555444443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=218.05 Aligned_cols=251 Identities=17% Similarity=0.177 Sum_probs=162.0
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccccc-ccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS-LENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 212 (453)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.... +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 3556666666655543333555666666666666666655455566666666666666666555432 555566666666
Q ss_pred CCCcccccCch-HHHhccCcceEEEecCC-cccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcc
Q 048417 213 GENELVENIPT-WIRERFSRIVVLILRSN-KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA 290 (453)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~ 290 (453)
++|.+.. ++. ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..|..+
T Consensus 132 ~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---------------- 194 (353)
T 2z80_A 132 LGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL---------------- 194 (353)
T ss_dssp TTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----------------
T ss_pred CCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH----------------
Confidence 6665543 222 22334555666666555 2444344455555556666665555553333333
Q ss_pred hhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCc
Q 048417 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
..+++|++|++++|.++......+..+++|+.|++++|.+.+..+.
T Consensus 195 ----------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 195 ----------------------------------KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp ----------------------------------TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred ----------------------------------hccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 3456689999999988743334455689999999999999865444
Q ss_pred cc---cCCCCCCEEEcCCCcCCC----CCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCc
Q 048417 371 SV---GTMRSLESIDFSLNQLSG----EIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDL 435 (453)
Q Consensus 371 ~l---~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l 435 (453)
.+ ...+.++.++++++.+.+ .+|+.+..+++|++|++++|+++...+.. ..+++|+.+++++|++
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 33 346778999999998874 36677889999999999999999655554 7899999999999953
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=214.84 Aligned_cols=229 Identities=21% Similarity=0.226 Sum_probs=144.7
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l 212 (453)
+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666666555555666666666666666666555556666666666666666666555 33555666666666
Q ss_pred CCCcccccCchHHHhccCcceEEEecCCc-ccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 213 GENELVENIPTWIRERFSRIVVLILRSNK-FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
++|.+.. ++...+..+++|+.|++++|. +....+..+..+++|++|++++|.+. .+|.
T Consensus 155 ~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~------------------- 213 (452)
T 3zyi_A 155 RNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN------------------- 213 (452)
T ss_dssp CSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-------------------
T ss_pred CCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-------------------
Confidence 6666543 333333455566666665533 22222334555556666666665554 2221
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 214 --------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 214 --------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp --------------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT
T ss_pred --------------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH
Confidence 123556777777777777666777777777888888777777666677
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
+..+++|++|++++|++++..+..+..+++|++|++++|++...
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 77777788888887777766666677777777888877777643
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-26 Score=212.49 Aligned_cols=248 Identities=19% Similarity=0.156 Sum_probs=192.5
Q ss_pred hhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCC
Q 048417 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALM 208 (453)
Q Consensus 129 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 208 (453)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++++. ..++|+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 34457889999999999987777788899999999999998875433 788899999999999887654 337899
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
+|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 103 ~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------- 165 (317)
T 3o53_A 103 TLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------------- 165 (317)
T ss_dssp EEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-------------
T ss_pred EEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-------------
Confidence 999999888654332 367788888888888777666777888888888888888743333221
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
..+++|++|++++|.+++. +. ...+++|+.|++++|.+. .+
T Consensus 166 ------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l 206 (317)
T 3o53_A 166 ------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FM 206 (317)
T ss_dssp ------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EE
T ss_pred ------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cc
Confidence 2356688899999988744 32 334889999999999998 55
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc-ccCCCC-cccceeecccCCCCC-ccCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT-GKIPSS-TQLQSFDASSFSGND-LCRAP 439 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~-~~l~~L~~l~l~~n~-l~~~~ 439 (453)
+..+..+++|++|++++|++. .+|..+..+++|+.|++++|++. +.++.. ..++.|+.+++++++ +.+.+
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 666888999999999999998 67778889999999999999998 444443 678888888888665 55543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=202.42 Aligned_cols=244 Identities=19% Similarity=0.142 Sum_probs=156.1
Q ss_pred cEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCC
Q 048417 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGEN 215 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~ 215 (453)
.+++++++.++ .+|.. ..+++++|++++|.+.+..+..|..+++|+.|++++|.+++.. ..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45556655555 34432 2356666666666666555455666666666666666666553 45666666677776666
Q ss_pred c-ccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhh
Q 048417 216 E-LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 216 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
. +.. .+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 91 ~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------- 150 (285)
T 1ozn_A 91 AQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------- 150 (285)
T ss_dssp TTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------------
T ss_pred CCccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-------------------
Confidence 5 433 3222234566777777777776666666677777777777777777633332232
Q ss_pred hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC
Q 048417 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 151 -------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 151 -------------------------------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp -------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred -------------------------------cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 2455677777777777555556777788888888888887666777777
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC
Q 048417 375 MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~ 434 (453)
+++|++|++++|.+.+..++.+..+++|++|++++|++....+.......++.+..+.+.
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~ 259 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECC
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCc
Confidence 888888888888887655566777888888888888877544433333344444554444
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=204.69 Aligned_cols=227 Identities=19% Similarity=0.230 Sum_probs=191.2
Q ss_pred CCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 157 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 157 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
..+++.|+++++.+. .+|..+..+++|++|++++|.+..++..+..+++|++|++++|.+. .+|..+ ..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEE
Confidence 478999999999998 6777788899999999999999877778888999999999999886 566554 4688899999
Q ss_pred ecCCcccccCchhhcC---------CCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 237 LRSNKFYNLLPKELCD---------LAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
+++|...+.+|..+.. +++|++|++++|.+. .+|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~------------------------------- 204 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN------------------------------- 204 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-------------------------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-------------------------------
Confidence 9888777777666543 788888888888877 66654433
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.
T Consensus 205 -------------------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 205 -------------------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp -------------------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred -------------------CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 556789999999998 566678999999999999999998999999999999999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCC
Q 048417 388 LSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 388 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~ 438 (453)
+.+.+|..+..+++|++|++++|++.+.+|.. ..+++|+.+++..+.+...
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 99999999999999999999999999888765 8899999999876654443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=206.50 Aligned_cols=247 Identities=22% Similarity=0.204 Sum_probs=192.2
Q ss_pred CcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 87 LEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.+.++..+..+...+....+.++.|++++|.+...... .+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34444445445444444445566666666665543322 34468888999999888886666778888999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
+|.++...+..|..+++|+.|++++|.+..+. ..+..+++|+.|+++++.....++...+..+++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99888666667888889999999999888766 46788889999999886555556665667789999999999988754
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+ .+..+++|++|++++|.+.+..+..+..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 229 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQG------------------------------------------------- 229 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTT-------------------------------------------------
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhcc-------------------------------------------------
Confidence 3 4788999999999999998555554443
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 230 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 -LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred -CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 455789999999999888889999999999999999999666678899999999999999875
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=208.09 Aligned_cols=247 Identities=20% Similarity=0.186 Sum_probs=195.6
Q ss_pred CcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 87 LEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.+.++..+..+...+....+++++|++++|.+...... .+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34455555555544444445666666666666543332 34468899999999999887777788889999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
+|.+....+..|..+++|+.|++++|.+..+. ..+..+++|+.|+++++...+.++...+..+++|+.|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99998666667888999999999999988776 46788899999999986555656666667889999999999998764
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+ .+..+++|++|++++|.+.+..+..+..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 240 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------------------------- 240 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------------------------
T ss_pred -c-cccccccccEEECcCCcCcccCcccccC-------------------------------------------------
Confidence 3 5788899999999999998655555443
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 241 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 241 -LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 455788999999998888888999999999999999999666677889999999999999876
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=207.68 Aligned_cols=262 Identities=23% Similarity=0.221 Sum_probs=167.1
Q ss_pred CeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEecc
Q 048417 63 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142 (453)
Q Consensus 63 ~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 142 (453)
+++.|+++++.++..+..+. ++|+.|++++|.+..... .+++|++|++++|.++.... .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV--------LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC--------CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC--------CCCCCCEEECc
Confidence 45666666666655444333 456666666665553322 44556666666665542111 35667777777
Q ss_pred CCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCc
Q 048417 143 GNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIP 222 (453)
Q Consensus 143 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 222 (453)
+|.+++ +|. .+.+|++|++++|.++. +|.. +++|+.|++++|.+++++. .+++|+.|++++|.+.. ++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-Cc
Confidence 776663 333 45667777777776663 3332 3667777777776665432 23566777777776644 33
Q ss_pred hHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccc
Q 048417 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 223 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
..+++|+.|++++|.+.+. +. ..++|+.|++++|.+. .+|.
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~------------------------------ 218 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA------------------------------ 218 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC------------------------------
T ss_pred ----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC------------------------------
Confidence 2356677777777766542 22 2356777777777765 3331
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEE
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESID 382 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 382 (453)
.+++|+.|++++|.+++ +| ..+++|+.|++++|.+. .+|. .+++|+.|+
T Consensus 219 -----------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 219 -----------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp -----------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred -----------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 13457888888888874 44 44678899999998888 5665 567899999
Q ss_pred cCCCcCCCCCCccccCCCCCCEEEccCCcccccCCC
Q 048417 383 FSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS 418 (453)
Q Consensus 383 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 418 (453)
+++|.+. .+|..+..+++|+.|++++|++++.++.
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9999888 7788888889999999999988875543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-27 Score=236.89 Aligned_cols=385 Identities=13% Similarity=0.067 Sum_probs=259.2
Q ss_pred cCCCcccEEEccCCcCCCCCCcccc-CCCcccEEEcCCC-cccccchhhHhhcCCCeEEEEccCCcccCCC-----cCcc
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLY-SQKHLNYLDLSYS-GIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-----PNLT 82 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-----~~l~ 82 (453)
..+++|++|+|++|.+++..+..+. .+++|++|++++| .+.......+...+++|++|++++|.+++.. ....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3588999999999998766555564 6899999999999 5544334444478999999999999876522 2233
Q ss_pred CCCCCcEEEccCCc--ccccc----ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCC-----------
Q 048417 83 NAAQLEVLSLGSNS--FSIAL----PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNF----------- 145 (453)
Q Consensus 83 ~~~~L~~L~l~~~~--~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~----------- 145 (453)
.+++|+.|++++|. +.... ...+++|++|++++|... ..+...+..+++|++|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL----EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH----HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH----HHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 67799999999986 22111 122589999999988321 1244444567777777754431
Q ss_pred ---------------CC----CCCchhhhcCCcccEEEcccCccCCCCC-ccccccccccEEEccCCccccc-c-ccccc
Q 048417 146 ---------------LQ----GELPDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLCGT-I-HSLEN 203 (453)
Q Consensus 146 ---------------~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~-~-~~~~~ 203 (453)
+. ..++..+..+++|++|++++|.+.+... ..+..+++|+.|++++| +... . .....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 11 1233334467899999999998663222 22457899999999988 4321 1 23345
Q ss_pred cCCCCEEeCCC---------CcccccCchHHHhccCcceEEEecCCcccccCchhhc-CCCCccEEEcc--C----CcCC
Q 048417 204 CTALMTLDVGE---------NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC-DLAFLQIVDLA--D----NNLS 267 (453)
Q Consensus 204 ~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~ 267 (453)
+++|+.|++.+ +.+.+.....+...+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 89999999843 3444433344445689999998888888665544554 58999999999 3 3444
Q ss_pred C-----CcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC
Q 048417 268 G-----EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342 (453)
Q Consensus 268 ~-----~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 342 (453)
. .++..+..+++|+.|++++ ......... ....+++|+.|++++|.+++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~-------------------------l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY-------------------------IGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH-------------------------HHHHCTTCCEEEEESCCSSH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH-------------------------HHHhchhccEeeccCCCCcH
Confidence 1 1223367789999999966 211111100 01136789999999999875
Q ss_pred cCCccc-cCCCCCcEEEcCCccCCCCCCc-cccCCCCCCEEEcCCCcCCCCCCccc-cCCCCCCEEEccCCcccccCCCC
Q 048417 343 KIPLEV-TNLKVLQSVNLSNNFFTGRIPE-SVGTMRSLESIDFSLNQLSGEIPQSM-SSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 343 ~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
..+..+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++....+.+ ..+|.|+...+..+.-....+..
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~ 550 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTT
T ss_pred HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccccc
Confidence 544444 5689999999999998644333 34568999999999999864433444 56788888888777655434444
Q ss_pred ccccee
Q 048417 420 TQLQSF 425 (453)
Q Consensus 420 ~~l~~L 425 (453)
.....+
T Consensus 551 ~~~~~~ 556 (594)
T 2p1m_B 551 CPVERV 556 (594)
T ss_dssp SBCSEE
T ss_pred chhhhh
Confidence 344333
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-26 Score=208.80 Aligned_cols=259 Identities=21% Similarity=0.147 Sum_probs=174.7
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEcc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLG 93 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~ 93 (453)
.++..+++.+.+.......+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34555555555533333445556677777777777755444444 677777777777777765443 6677777777777
Q ss_pred CCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC
Q 048417 94 SNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN 173 (453)
Q Consensus 94 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 173 (453)
+|.+..... .++|++|++++|.+...... .+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 89 ~n~l~~l~~--~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELLV--GPSIETLHAANNNISRVSCS-------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEEE--CTTCCEEECCSSCCSEEEEC-------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCccccccC--CCCcCEEECCCCccCCcCcc-------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 777664332 36777777777777643322 366788888888877765555677777888888888877755
Q ss_pred CCcccc-ccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcC
Q 048417 174 LPISLG-SLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252 (453)
Q Consensus 174 ~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 252 (453)
.+..+. .+++|+.|++++|.++... ....+++|+.|++++|.+.+..+ . +..+++|+.|++++|.+.. +|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcchh-h-hcccCcccEEECcCCcccc-hhhHhhc
Confidence 555543 5677888888888777654 23347778888888887765333 3 3467788888888887764 4556777
Q ss_pred CCCccEEEccCCcCC-CCcccccccccccceecccc
Q 048417 253 LAFLQIVDLADNNLS-GEVPRCIHNLRAMVTMNSHA 287 (453)
Q Consensus 253 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~i~~ 287 (453)
+++|+.|++++|.+. +..+..+..++.++.+++.+
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 888888888888887 56667777777777665553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=213.00 Aligned_cols=259 Identities=18% Similarity=0.141 Sum_probs=199.7
Q ss_pred hhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccccccccc
Q 048417 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENC 204 (453)
Q Consensus 125 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 204 (453)
.+......+++|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|+.|++++|.+++++. .
T Consensus 25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~ 98 (487)
T 3oja_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----G 98 (487)
T ss_dssp HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----C
T ss_pred HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----C
Confidence 333333456689999999999997777888999999999999999885544 7889999999999998876553 3
Q ss_pred CCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceec
Q 048417 205 TALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 284 (453)
++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------- 165 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------- 165 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG---------
T ss_pred CCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh---------
Confidence 7899999999988664432 467889999999988887777888888999999999888755554432
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccC
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 364 (453)
..+++|+.|++++|.+++..+ ...+++|+.|++++|.+
T Consensus 166 ----------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 166 ----------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp ----------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred ----------------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence 135668999999999885532 33589999999999999
Q ss_pred CCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc-ccCCC-CcccceeecccCCCCC--ccCCCC
Q 048417 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT-GKIPS-STQLQSFDASSFSGND--LCRAPL 440 (453)
Q Consensus 365 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~l~l~~n~--l~~~~~ 440 (453)
. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +.+|. ...++.|+.+++..+. -.+.+.
T Consensus 204 ~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 281 (487)
T 3oja_A 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (487)
T ss_dssp C-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSC
T ss_pred C-CCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcc
Confidence 9 45556889999999999999999 57888999999999999999998 44433 3667788888775222 223344
Q ss_pred CCCCCC
Q 048417 441 SGNCSE 446 (453)
Q Consensus 441 ~~~c~~ 446 (453)
.|.|..
T Consensus 282 ~c~~~~ 287 (487)
T 3oja_A 282 ECTVPT 287 (487)
T ss_dssp CCSSTT
T ss_pred cccCCc
Confidence 555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=196.81 Aligned_cols=248 Identities=20% Similarity=0.233 Sum_probs=159.2
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCc-ccccc-ccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN-LCGTI-HSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~ 211 (453)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|. +.... ..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 445555555555553333445555555555555555554445555555556666665554 44442 4455556666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
+++|.+.+..+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 112 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------- 174 (285)
T 1ozn_A 112 LDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR---------------- 174 (285)
T ss_dssp CTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT----------------
T ss_pred CCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc----------------
Confidence 666665443232 234566777777777777666666678888899999999888733222232
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..
T Consensus 175 ----------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 175 ----------------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp ----------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred ----------------------------------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence 3456788899999888777888889999999999999998655567
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC---cccceeecccCCCC
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS---TQLQSFDASSFSGN 433 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~l~~L~~l~l~~n 433 (453)
+..+++|+.|++++|++...-+. ..-...++.+..+.+.+....|.. ..+..++..++.||
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 88999999999999988743221 111223455556777777666543 34566666666655
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-25 Score=204.55 Aligned_cols=248 Identities=19% Similarity=0.252 Sum_probs=156.0
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC-CCCCcccc-------ccccccEEEccCCcccccc-ccc--
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT-GNLPISLG-------SLISLQSLHLRKNNLCGTI-HSL-- 201 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~-~~~-- 201 (453)
.++|+++++++|.+ .+|..+... |++|++++|.+. ...|..+. .+++|++|++++|.+++.. ..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44555555655555 344433332 555555555553 22232222 3556666666666655322 222
Q ss_pred cccCCCCEEeCCCCcccccCchHHHhcc-----CcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCc--cccc
Q 048417 202 ENCTALMTLDVGENELVENIPTWIRERF-----SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV--PRCI 274 (453)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~ 274 (453)
..+++|++|++++|.+.+. +..+ ..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+ +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5566666666666666554 3332 233 67777777777777766677777788888888887765321 1111
Q ss_pred ccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc---CCccccCC
Q 048417 275 HNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK---IPLEVTNL 351 (453)
Q Consensus 275 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~ 351 (453)
.+..+++|++|++++|.+++. ....+..+
T Consensus 196 ------------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 196 ------------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp ------------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred ------------------------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 012356678888888877621 12234567
Q ss_pred CCCcEEEcCCccCCCCCC-ccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccC
Q 048417 352 KVLQSVNLSNNFFTGRIP-ESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSF 430 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l 430 (453)
++|+.|++++|.+.+..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |....+++|+.+++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSL 303 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEEC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEec
Confidence 888888888888876554 45566788888888888888 6666655 7888888888888865 55778888888888
Q ss_pred CCCCccCC
Q 048417 431 SGNDLCRA 438 (453)
Q Consensus 431 ~~n~l~~~ 438 (453)
++|++++.
T Consensus 304 ~~N~l~~~ 311 (312)
T 1wwl_A 304 KGNPFLDS 311 (312)
T ss_dssp TTCTTTCC
T ss_pred cCCCCCCC
Confidence 88887654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-23 Score=204.17 Aligned_cols=259 Identities=24% Similarity=0.245 Sum_probs=198.8
Q ss_pred CCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
+++.|++++|.+...+....++|++|++++|.+..... .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--------CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--------cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 58899999999886665566789999999988774221 3788999999998887 4554 6788889999
Q ss_pred ccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
++|.+.. +|. .+++|+.|++++|.++.++.. +++|++|++++|.+.+ ++. ..++|+.|++.+|.+...
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCCC
Confidence 9888884 443 457788888888888776543 3788888888887754 332 346788888888887653
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+ ..+++|+.|++++|.+. .+|..
T Consensus 177 -~---~~~~~L~~L~Ls~N~l~-~l~~~---------------------------------------------------- 199 (622)
T 3g06_A 177 -P---MLPSGLQELSVSDNQLA-SLPTL---------------------------------------------------- 199 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCS-CCCCC----------------------------------------------------
T ss_pred -c---ccCCCCcEEECCCCCCC-CCCCc----------------------------------------------------
Confidence 3 34577888888888776 33321
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+| ..+++|+.|++++|.+. .+|. .+++|+.|
T Consensus 200 -~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L 266 (622)
T 3g06_A 200 -PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL 266 (622)
T ss_dssp -CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred -cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence 345899999999988 4443 2488999999999998 466 45789999999999999 5565 67899999
Q ss_pred EccCCcccccCCCCcccceeecccCCCCCccCC
Q 048417 406 NLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 406 ~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~ 438 (453)
++++|+++..++.+..+++|+.+++++|++.+.
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 999999995544568899999999999997653
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=208.72 Aligned_cols=236 Identities=19% Similarity=0.114 Sum_probs=134.8
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
.+++|++|+|++|.+++..+.+|..+++|++|++++|.+++..+ +..+++|++|++++|.++..+. .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 34477777777777776666677777777777777777755554 3667777777777777665432 2667777
Q ss_pred EccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhh-cCCcccEEEcccCc
Q 048417 91 SLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM-NYQNLMILDLSNNK 169 (453)
Q Consensus 91 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 169 (453)
++++|.+.......+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 7777777665555556666666666666543222 223456666666666666654444443 45666666666666
Q ss_pred cCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccc-ccCch
Q 048417 170 FTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY-NLLPK 248 (453)
Q Consensus 170 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 248 (453)
+++. + .+..+++|+.|++++|.+++.++.+..+++|+.|++++|.+.+ +|..+ ..+++|+.+++++|++. +..+.
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l-~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKAL-RFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTC-CCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhh-ccCCCCCEEEcCCCCCcCcchHH
Confidence 5533 1 1234555666666666655555445555555555555555543 22221 23344444444444443 22333
Q ss_pred hhcCCCCccEEEc
Q 048417 249 ELCDLAFLQIVDL 261 (453)
Q Consensus 249 ~~~~~~~L~~L~l 261 (453)
.+..++.++.+++
T Consensus 257 ~~~~l~~L~~l~~ 269 (487)
T 3oja_A 257 FFSKNQRVQTVAK 269 (487)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhCCCCcEEec
Confidence 3344444444333
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-24 Score=199.01 Aligned_cols=255 Identities=20% Similarity=0.215 Sum_probs=163.5
Q ss_pred CCCCCcEEEccCCccccccccccccCcEEECcCCCCCC-chhhhhh---hhhcccCcccEEeccCCCCCCCCchhh--hc
Q 048417 83 NAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISG-SIFHFIC---YRANELNKWQILYLSGNFLQGELPDCW--MN 156 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~ 156 (453)
...+|+.|++++|.+ ..+......++.|++++|.+.. ..+.... ..+..+++|++|++++|.+++..|..+ ..
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred cCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 344677777777777 3332233446667777666632 1111111 111246677777777777665566544 56
Q ss_pred CCcccEEEcccCccCCCCCcccccc-----ccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccC
Q 048417 157 YQNLMILDLSNNKFTGNLPISLGSL-----ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFS 230 (453)
Q Consensus 157 l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 230 (453)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+.. ..+..+++|++|++++|.+.+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 190 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------- 190 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--------
Confidence 66777777777776644 5555554 66666666666666555 455566666666666655432110
Q ss_pred cceEEEecCCcccccCchh--hcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhh
Q 048417 231 RIVVLILRSNKFYNLLPKE--LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATL 308 (453)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 308 (453)
.+.. +..+++|++|++++|.+. .++...
T Consensus 191 ---------------~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---------------------------------- 220 (312)
T 1wwl_A 191 ---------------LISALCPLKFPTLQVLALRNAGME-TPSGVC---------------------------------- 220 (312)
T ss_dssp ---------------HHHHSCTTSCTTCCEEECTTSCCC-CHHHHH----------------------------------
T ss_pred ---------------HHHHHHhccCCCCCEEECCCCcCc-chHHHH----------------------------------
Confidence 1112 266778888888888776 211100
Q ss_pred hhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 309 LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
...+..+++|++|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|+
T Consensus 221 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 221 ------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp ------------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred ------------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 0111235678889999998886554 45566789999999999998 7777665 889999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccc
Q 048417 388 LSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 388 l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
+++. |. +..+++|++|++++|++++
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9855 65 8899999999999999885
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=180.58 Aligned_cols=213 Identities=20% Similarity=0.159 Sum_probs=140.1
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
+++++|++++|.+.+..+..|..+++|+.|++++|.+.+.. ..+..+++|++|++++|.+.+..+. .+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEE
Confidence 35666666666666544445666666666666666665554 3456666666666666666443322 223566666666
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCC-cccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHH
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE-VPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVV 315 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (453)
+.+|.+....+..+..+++|++|++++|.+.+. +|..+.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~---------------------------------------- 146 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---------------------------------------- 146 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG----------------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc----------------------------------------
Confidence 666666555555566777777777777777632 344333
Q ss_pred hcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCc----EEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC
Q 048417 316 MKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQ----SVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391 (453)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 391 (453)
.+++|++|++++|.+++..+..+..+++|+ .|++++|.+.+..+..+ ...+|++|++++|++.+.
T Consensus 147 ----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 147 ----------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSV 215 (276)
T ss_dssp ----------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCC
T ss_pred ----------cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeec
Confidence 345567777877777765556666556665 78888888884444434 445789999999988866
Q ss_pred CCccccCCCCCCEEEccCCcccccCCCCccc
Q 048417 392 IPQSMSSLKFLNHLNLSNNNLTGKIPSSTQL 422 (453)
Q Consensus 392 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l 422 (453)
.+..+..+++|++|++++|++.+..+.+..+
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred CHhHhcccccccEEEccCCcccccCCchHHH
Confidence 6667788899999999999988776665443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=177.35 Aligned_cols=207 Identities=22% Similarity=0.255 Sum_probs=157.5
Q ss_pred cccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
..++++++++.++ .+|..+. ++++.|++++|.+..+. ..+..+++|++|++++|.+.. ++...+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEEC
Confidence 5778999998888 4565443 57899999999888776 467888889999998888754 55555556788888888
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhc
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMK 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (453)
++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------ 130 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD------------------------------------------ 130 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT------------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC------------------------------------------
Confidence 88888776666777788888888888877643333332
Q ss_pred CCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 048417 318 GREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMS 397 (453)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 397 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+.
T Consensus 131 --------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 131 --------SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp --------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred --------cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 355678888888888766666678888888888888888855556678888888888888888866666788
Q ss_pred CCCCCCEEEccCCcccccCCCC
Q 048417 398 SLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+++|+.|++++|++....+..
T Consensus 203 ~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp TCTTCCEEECCSSCBCCSSSSS
T ss_pred cccCCCEEEecCCCeeCCCccH
Confidence 8888888888888887655543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=181.26 Aligned_cols=227 Identities=22% Similarity=0.216 Sum_probs=174.3
Q ss_pred EEcccCccCCCCCccccccccccEEEccCCccccccc-cccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCc
Q 048417 163 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNK 241 (453)
Q Consensus 163 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 241 (453)
++-.+..+. .+|..+. ++++.|++++|.+++... .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCc
Confidence 334444444 4555443 579999999999887774 78888999999999998865333 334567888899998888
Q ss_pred ccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcc
Q 048417 242 FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREA 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (453)
+....+..+..+++|++|++++|.+.+..+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------------- 120 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI----------------------------------------------- 120 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC-----------------------------------------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhc-----------------------------------------------
Confidence 887777778888888888888888774333232
Q ss_pred hhhhhcCcccEEecCCCcCCCc-CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCC----EEEcCCCcCCCCCCccc
Q 048417 322 KYERTLNLVRIIDFSKNNFSGK-IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLE----SIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 322 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l 396 (453)
..+++|++|++++|.+++. .|..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|++.+..+..+
T Consensus 121 ---~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 121 ---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp ---TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred ---ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 3356689999999999863 588999999999999999999966667777777777 89999999995555444
Q ss_pred cCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCCCCCCCcc
Q 048417 397 SSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEHVS 449 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~ 449 (453)
. ..+|++|++++|++++.++.. ..+++|+.+++++|+ +.|.|+.+..
T Consensus 198 ~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~-----~~c~c~~l~~ 245 (276)
T 2z62_A 198 K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP-----WDCSCPRIDY 245 (276)
T ss_dssp C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC-----BCCCTTTTHH
T ss_pred C-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc-----ccccCCchHH
Confidence 4 458999999999999776665 789999999999994 5567766543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=177.41 Aligned_cols=203 Identities=21% Similarity=0.201 Sum_probs=144.7
Q ss_pred hhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcc
Q 048417 154 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRI 232 (453)
Q Consensus 154 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 232 (453)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+.... ..+..+++|+.|++++|.+.+..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 566778888898888888 4555443 67888888888887765 5677888888888888877553222 356777
Q ss_pred eEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhH
Q 048417 233 VVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312 (453)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (453)
++|++++|.+.. +|..+..+++|++|++++|++++..+..+.
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~------------------------------------- 121 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR------------------------------------- 121 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT-------------------------------------
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHc-------------------------------------
Confidence 777777777753 455566677777777777777633333332
Q ss_pred HHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCC
Q 048417 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI 392 (453)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 392 (453)
.+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++. .+
T Consensus 122 -------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 122 -------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp -------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred -------------CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 3455677888888877666666777788888888888887444455677888888888888887 66
Q ss_pred CccccCCCCCCEEEccCCcccc
Q 048417 393 PQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 393 ~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
|..+..+++|+.|++++|++..
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCC
T ss_pred ChhhcccccCCeEEeCCCCccC
Confidence 7777777788888888887764
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-21 Score=172.08 Aligned_cols=203 Identities=20% Similarity=0.223 Sum_probs=158.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccc-cccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-SLENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 212 (453)
...++++++++.++ .+|..+. ..+++|++++|.+....+..|..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35778899888888 5665443 678899999998886666678888999999999998887764 4577889999999
Q ss_pred CCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchh
Q 048417 213 GENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQ 292 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~ 292 (453)
++|.+.. .+...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 93 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----------------- 154 (270)
T 2o6q_A 93 TDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----------------- 154 (270)
T ss_dssp CSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----------------
T ss_pred CCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc-----------------
Confidence 9988855 4444556788899999999988887777788889999999999888733322232
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccc
Q 048417 293 YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372 (453)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 372 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+
T Consensus 155 ---------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 155 ---------------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp ---------------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ---------------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 34567888888888886666678888899999999998885555667
Q ss_pred cCCCCCCEEEcCCCcCCC
Q 048417 373 GTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 373 ~~l~~L~~L~l~~n~l~~ 390 (453)
..+++|+.|++++|++..
T Consensus 202 ~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred ccccCCCEEEecCCCeeC
Confidence 888899999999998764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=190.71 Aligned_cols=256 Identities=18% Similarity=0.175 Sum_probs=160.9
Q ss_pred EEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCc----hhhhcCC-cccEEEcccCccCCCCCcccccc---
Q 048417 110 ELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELP----DCWMNYQ-NLMILDLSNNKFTGNLPISLGSL--- 181 (453)
Q Consensus 110 ~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l--- 181 (453)
+++++++.+++..+..+ ...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT----SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHH----TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHH----hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 35667777765443332 235558888888888875554 5566677 78888888888876666555554
Q ss_pred --ccccEEEccCCcccccc-c----ccccc-CCCCEEeCCCCcccccCchHHHhc----cCcceEEEecCCcccccCch-
Q 048417 182 --ISLQSLHLRKNNLCGTI-H----SLENC-TALMTLDVGENELVENIPTWIRER----FSRIVVLILRSNKFYNLLPK- 248 (453)
Q Consensus 182 --~~L~~L~l~~~~~~~~~-~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~- 248 (453)
++|++|++++|.++... . .+..+ ++|++|++++|.+.+..+..+... ..+|++|++++|.+.+....
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 77888888888776544 2 23344 677777777777765444433322 24677777777776543322
Q ss_pred ---hhcCCC-CccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhh
Q 048417 249 ---ELCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYE 324 (453)
Q Consensus 249 ---~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (453)
.+..++ +|++|++++|.+.+..+..+. ..+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----------------------------------------------~~l 191 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELA----------------------------------------------KFL 191 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHH----------------------------------------------HHH
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHH----------------------------------------------HHH
Confidence 233443 677777777766533332221 111
Q ss_pred hhc-CcccEEecCCCcCCCc----CCccccC-CCCCcEEEcCCccCCCCCC----ccccCCCCCCEEEcCCCcCCCCC--
Q 048417 325 RTL-NLVRIIDFSKNNFSGK----IPLEVTN-LKVLQSVNLSNNFFTGRIP----ESVGTMRSLESIDFSLNQLSGEI-- 392 (453)
Q Consensus 325 ~~~-~~L~~L~l~~~~l~~~----~~~~~~~-~~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~-- 392 (453)
..+ ++|++|++++|.+++. ++..+.. .++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus 192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 223 3688888888888753 2333433 4578888888888875433 33466788888888888754332
Q ss_pred -----CccccCCCCCCEEEccCCccccc
Q 048417 393 -----PQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 393 -----~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
++.+..+++|++|++++|++.+.
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 24566777888888888887754
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=190.54 Aligned_cols=254 Identities=17% Similarity=0.119 Sum_probs=135.8
Q ss_pred EEccCCcCCCCCCccccCCCcccEEEcCCCcccccchh---hHhhcCC-CeEEEEccCCcccCCC-cCccCC-----CCC
Q 048417 18 LGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPN---IFWSSAS-QIYVLDLSFNQIHGQI-PNLTNA-----AQL 87 (453)
Q Consensus 18 L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~ls~~~~~~~~-~~l~~~-----~~L 87 (453)
++++++.+++..+..+...++|++|++++|.+.+..+. ..+..++ +|++|++++|.++... ..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34555555444444444444466666666555333331 1124444 5666666665555421 122221 556
Q ss_pred cEEEccCCccccccccc-------c-ccCcEEECcCCCCCCchhhhhhhhhccc-CcccEEeccCCCCCCCCc----hhh
Q 048417 88 EVLSLGSNSFSIALPLI-------S-SYLIELDFSNNSISGSIFHFICYRANEL-NKWQILYLSGNFLQGELP----DCW 154 (453)
Q Consensus 88 ~~L~l~~~~~~~~~~~~-------~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~l 154 (453)
++|++++|.+....... + ++|++|++++|.+.......+...+..+ ++|++|++++|.+++... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666555433221 1 4566666666666555555555544442 466666666666653322 222
Q ss_pred hcCC-cccEEEcccCccCCCCCcccc----cc-ccccEEEccCCcccc-----ccccccc-cCCCCEEeCCCCcccccCc
Q 048417 155 MNYQ-NLMILDLSNNKFTGNLPISLG----SL-ISLQSLHLRKNNLCG-----TIHSLEN-CTALMTLDVGENELVENIP 222 (453)
Q Consensus 155 ~~l~-~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~~~~ 222 (453)
...+ +|++|++++|.+.+..+..+. .. ++|+.|++++|.+.. +...+.. .++|++|++++|.+.+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 666666666666644443322 23 367777777776655 2233333 3477777777777755433
Q ss_pred hH---HHhccCcceEEEecCCcccccC-------chhhcCCCCccEEEccCCcCCCCcc
Q 048417 223 TW---IRERFSRIVVLILRSNKFYNLL-------PKELCDLAFLQIVDLADNNLSGEVP 271 (453)
Q Consensus 223 ~~---~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~~ 271 (453)
.. .+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 22 2234567777777777643322 2345667788888888888775433
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=171.14 Aligned_cols=204 Identities=21% Similarity=0.167 Sum_probs=166.7
Q ss_pred hcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCE
Q 048417 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMT 209 (453)
Q Consensus 130 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 209 (453)
+..++++++++++++.++ .+|..+ .+.+++|++++|.+.+..+..|..+++|+.|++++|.++.+... ..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 346788888999888887 566544 36888999999988877677788889999999999988776543 67889999
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCc
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~ 289 (453)
|++++|.+.. ++..+ ..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..+.
T Consensus 82 L~Ls~N~l~~-l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------------- 145 (290)
T 1p9a_G 82 LDLSHNQLQS-LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-------------- 145 (290)
T ss_dssp EECCSSCCSS-CCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--------------
T ss_pred EECCCCcCCc-Cchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc--------------
Confidence 9999998853 44433 4688999999999999887778899999999999999999844333332
Q ss_pred chhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCC
Q 048417 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIP 369 (453)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 369 (453)
.+++|+.|++++|+++...+..+..+++|+.|++++|++. .+|
T Consensus 146 ------------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 146 ------------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp ------------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred ------------------------------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 3566899999999998666667788999999999999999 888
Q ss_pred ccccCCCCCCEEEcCCCcCCC
Q 048417 370 ESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 370 ~~l~~l~~L~~L~l~~n~l~~ 390 (453)
..+..+++|+.+++++|++..
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCC
T ss_pred hhhcccccCCeEEeCCCCccC
Confidence 888888999999999998863
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=176.08 Aligned_cols=223 Identities=18% Similarity=0.151 Sum_probs=145.9
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVG 213 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 213 (453)
.++..+++.++.+... ..+..+.+|+.|+++++.+.. . ..+..+++|+.|++++|.+.+. ..+..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECT
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECC
Confidence 3444445555554422 224556667777777776652 2 2356666777777777766543 355566667777777
Q ss_pred CCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhh
Q 048417 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQY 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~ 293 (453)
+|.+.+ .+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 94 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------ 154 (272)
T 3rfs_A 94 GNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD------------------ 154 (272)
T ss_dssp TSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------
T ss_pred CCccCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc------------------
Confidence 666644 3333334566677777777766665555667777777777777777633332222
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcccc
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 373 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 155 --------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 155 --------------------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp --------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred --------------------------------cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 345567788888888766666677788888888888888866666678
Q ss_pred CCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 374 TMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+++|++|++++|++... ++.|+.++++.|.++|.+|..
T Consensus 203 ~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 888888888888877633 556888888888888877754
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=193.70 Aligned_cols=242 Identities=18% Similarity=0.135 Sum_probs=150.1
Q ss_pred CCccccCCCcccEEEcCCCcccccchhhH---hhcCCCeEEEEccCCcccCC----CcC-------ccCCCCCcEEEccC
Q 048417 29 FPSWLYSQKHLNYLDLSYSGIIGTIPNIF---WSSASQIYVLDLSFNQIHGQ----IPN-------LTNAAQLEVLSLGS 94 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~ls~~~~~~~----~~~-------l~~~~~L~~L~l~~ 94 (453)
++.++..+++|++|++++|.+.+..+..+ +..+++|++|++++|.+... +.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44555666677777777776644433332 24566677777766544321 111 24566777777777
Q ss_pred Cccccc----cc---cccccCcEEECcCCCCCCchhhhhhhhhccc---------CcccEEeccCCCCC-CCCc---hhh
Q 048417 95 NSFSIA----LP---LISSYLIELDFSNNSISGSIFHFICYRANEL---------NKWQILYLSGNFLQ-GELP---DCW 154 (453)
Q Consensus 95 ~~~~~~----~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~l 154 (453)
|.+... .+ ..+++|++|++++|.+.......++..+..+ ++|++|++++|+++ ...+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 766652 11 1245677777777777655455555544444 77777777777776 2233 345
Q ss_pred hcCCcccEEEcccCccCC-----CCCccccccccccEEEccCCccc-----cccccccccCCCCEEeCCCCcccccCchH
Q 048417 155 MNYQNLMILDLSNNKFTG-----NLPISLGSLISLQSLHLRKNNLC-----GTIHSLENCTALMTLDVGENELVENIPTW 224 (453)
Q Consensus 155 ~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (453)
..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.+.....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 567777788887777652 22225667777888888888773 23355667778888888888775542222
Q ss_pred HHh-----ccCcceEEEecCCcccc----cCchhh-cCCCCccEEEccCCcCCCCc
Q 048417 225 IRE-----RFSRIVVLILRSNKFYN----LLPKEL-CDLAFLQIVDLADNNLSGEV 270 (453)
Q Consensus 225 ~~~-----~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 270 (453)
+.. .+++|+.|++++|.+.. .++..+ .++++|++|++++|.+.+..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 221 26778888888888766 355555 55788888888888887555
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-23 Score=195.59 Aligned_cols=92 Identities=13% Similarity=0.320 Sum_probs=65.4
Q ss_pred hhcCcccEEecCCCcCC----CcCCccccCCCCCcEEEcCCccCCCC----CCcccc--CCCCCCEEEcCCCcCCC----
Q 048417 325 RTLNLVRIIDFSKNNFS----GKIPLEVTNLKVLQSVNLSNNFFTGR----IPESVG--TMRSLESIDFSLNQLSG---- 390 (453)
Q Consensus 325 ~~~~~L~~L~l~~~~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~--~l~~L~~L~l~~n~l~~---- 390 (453)
..+++|+.|++++|.++ ..++..+..+++|+.|++++|.+.+. ++..+. .+++|++|++++|.+..
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 34566777888877774 34566677778888888888887654 344553 37888888888888875
Q ss_pred CCCccc-cCCCCCCEEEccCCcccccC
Q 048417 391 EIPQSM-SSLKFLNHLNLSNNNLTGKI 416 (453)
Q Consensus 391 ~~~~~l-~~l~~L~~L~l~~n~l~~~~ 416 (453)
.+|..+ ..+++|++|++++|++++..
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcch
Confidence 366655 55788888888888887654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=176.67 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=151.6
Q ss_pred CcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhh--hcCCcccEEEcccCccCCCCC----cccccc
Q 048417 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW--MNYQNLMILDLSNNKFTGNLP----ISLGSL 181 (453)
Q Consensus 108 L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~~l 181 (453)
++.+.+.++.+.......+...+ .+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 44555555555433332222211 34568888888888776666666 677788888888887775433 223456
Q ss_pred ccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 182 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
++|++|++++|.+.... ..+..+++|++|++++|.+.+... +. .+..+..+++|++|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~-------------------~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--LM-------------------AALCPHKFPAIQNLA 203 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--HH-------------------TTSCTTSSCCCCSCB
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--hh-------------------HHHhhhcCCCCCEEE
Confidence 67777777777776555 455666667777776666532100 00 112234567788888
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 340 (453)
+++|.++ .++.... ..+..+++|++|++++|.+
T Consensus 204 Ls~N~l~-~l~~~~~----------------------------------------------~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 204 LRNTGME-TPTGVCA----------------------------------------------ALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCSSCCC-CHHHHHH----------------------------------------------HHHHHTCCCSSEECTTSCC
T ss_pred CCCCCCC-chHHHHH----------------------------------------------HHHhcCCCCCEEECCCCCC
Confidence 8888775 2221100 0113456788888888888
Q ss_pred CCcCCccccCC---CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 341 SGKIPLEVTNL---KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 341 ~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 86666666655 68999999999998 7776664 7899999999999843 43 6788999999999998874
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=169.17 Aligned_cols=217 Identities=17% Similarity=0.192 Sum_probs=166.5
Q ss_pred cccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEec
Q 048417 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILR 238 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 238 (453)
.+..+++..+.+.+. ..+..+++|+.|++.+|.+... ..+..+++|+.|++++|.+.+ .+ .+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECC
Confidence 444455666655533 2355678889999988887644 457778889999998888765 22 23467888888888
Q ss_pred CCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcC
Q 048417 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (453)
+|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------------------------- 130 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD------------------------------------------- 130 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-------------------------------------------
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-------------------------------------------
Confidence 8888777766778888888888888888744333333
Q ss_pred CcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccC
Q 048417 319 REAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSS 398 (453)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 398 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+..
T Consensus 131 -------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (272)
T 3rfs_A 131 -------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203 (272)
T ss_dssp -------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC
Confidence 3556899999999998777777889999999999999999666677889999999999999999888888899
Q ss_pred CCCCCEEEccCCcccccCCCCcccceeecccCCCCCccC
Q 048417 399 LKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~ 437 (453)
+++|++|++++|++.+..| .|+.+++++|.++|
T Consensus 204 l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 204 LTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSG 236 (272)
T ss_dssp CTTCCEEECCSSCBCCCTT------TTHHHHHHHHHTGG
T ss_pred CcCCCEEEccCCCccccCc------HHHHHHHHHHhCCC
Confidence 9999999999999987655 45555666555444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=165.56 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=120.4
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------------------------------- 104 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD-------------------------------- 104 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--------------------------------
T ss_pred CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc--------------------------------
Confidence 445555555555555555555667777888888888877633333332
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 105 ------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 105 ------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp ------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 34567888898888886666678889999999999999996666678999999999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccccCCCCcccce------eecccCCCCCccCCCCCCCCCCC
Q 048417 388 LSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS------FDASSFSGNDLCRAPLSGNCSEH 447 (453)
Q Consensus 388 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~------L~~l~l~~n~l~~~~~~~~c~~~ 447 (453)
+.+..+..+..+++|++|++++|++.+....+..++. ....+..++.+++.|....|..-
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 9977777899999999999999999876444433222 23345556667778888888665
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-21 Score=179.66 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=99.3
Q ss_pred CcccEEeccCCCCCCCCchhhhcC--CcccEEEcccCccCCCCCccccccccccEEEccCCcccc--ccccccccCCCCE
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNY--QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG--TIHSLENCTALMT 209 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~ 209 (453)
..++.++++++.+. +..+..+ ..++.++++++.+.+..+. +..+++|+.|++++|.+.. ....+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34778888887765 4555665 7888888888888755544 4567888888888887754 3355677788888
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCC-ccccc-CchhhcCCCCccEEEccCC-cCCCC-ccccccccc-ccceec
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSN-KFYNL-LPKELCDLAFLQIVDLADN-NLSGE-VPRCIHNLR-AMVTMN 284 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~l~ 284 (453)
|++++|.+.+..+..+ ..+++|++|++++| .+.+. .+..+..+++|++|++++| .+++. ++..+..++ +|+.|+
T Consensus 123 L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888887655444444 34777778887777 45432 4445666777777777777 66532 344455555 555555
Q ss_pred cccC
Q 048417 285 SHAG 288 (453)
Q Consensus 285 i~~~ 288 (453)
++++
T Consensus 202 l~~~ 205 (336)
T 2ast_B 202 LSGY 205 (336)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 5554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=176.69 Aligned_cols=229 Identities=18% Similarity=0.204 Sum_probs=154.7
Q ss_pred CcccEEEcccCccCCCCCc---cccccccccEEEccCCcccccc-ccc--cccCCCCEEeCCCCcccccCch---HHHhc
Q 048417 158 QNLMILDLSNNKFTGNLPI---SLGSLISLQSLHLRKNNLCGTI-HSL--ENCTALMTLDVGENELVENIPT---WIRER 228 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~-~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 228 (453)
..++.+.+.++.+...... .+..+++|++|++++|.+.+.. ..+ ..+++|++|++++|.+.+..+. ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466667766655421000 0122455777777777776544 333 6677777777777777553331 11124
Q ss_pred cCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhh
Q 048417 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATL 308 (453)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 308 (453)
+++|++|++++|.+....+..+..+++|++|++++|.+.+.. ...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~----------- 188 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER------------------------GLM----------- 188 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH------------------------HHH-----------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch------------------------hhh-----------
Confidence 566666666666666655566666666666666666654210 000
Q ss_pred hhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCc----cccCCCCCcEEEcCCccCCCCCCccccCC---CCCCEE
Q 048417 309 LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPL----EVTNLKVLQSVNLSNNFFTGRIPESVGTM---RSLESI 381 (453)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L 381 (453)
.......+++|++|++++|+++. .+. .+..+++|++|++++|.+.+..|..+..+ ++|++|
T Consensus 189 -----------~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 189 -----------AALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp -----------TTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred -----------HHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence 00111346778999999999863 332 24678999999999999997778777666 799999
Q ss_pred EcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccC
Q 048417 382 DFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 382 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~ 437 (453)
++++|+++ .+|..+. ++|++|++++|++++. |....+++|+.+++++|++++
T Consensus 257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 99999999 6777664 8999999999999964 556789999999999998765
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-21 Score=181.21 Aligned_cols=231 Identities=18% Similarity=0.206 Sum_probs=157.9
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC-CCccccccccccEEEccCCcccccc-ccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN-LPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~ 211 (453)
++++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+.. ..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6777888888777755444 45678888888888877643 5556677788888888888776433 5566788888888
Q ss_pred CCCC-cccccCchHHHhccCcceEEEecCC-ccccc-CchhhcCCC-CccEEEccCCc--CC-CCcccccccccccceec
Q 048417 212 VGEN-ELVENIPTWIRERFSRIVVLILRSN-KFYNL-LPKELCDLA-FLQIVDLADNN--LS-GEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 212 l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~l~ 284 (453)
+++| .+.+......+..+++|++|++++| .+.+. .+..+..++ +|++|++++|. ++ +.++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~------------ 216 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST------------ 216 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH------------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH------------
Confidence 8888 4544323333456788888888888 77653 455677788 99999999884 33 11121
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc-CCCcCCccccCCCCCcEEEcCCcc
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN-FSGKIPLEVTNLKVLQSVNLSNNF 363 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n~ 363 (453)
.+..+++|++|++++|. +++..+..+..+++|+.|++++|.
T Consensus 217 --------------------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 217 --------------------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp --------------------------------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred --------------------------------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 12346678888888887 665666677888888889888885
Q ss_pred -CCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCC-CCCEEEccCCcccccCCCC
Q 048417 364 -FTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK-FLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 364 -~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~ 419 (453)
+.+.....+..+++|++|++++| +.. +.+..+. .++.|++++|++++..|..
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 32222235777888888888888 432 2333332 3566668888888776654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=165.12 Aligned_cols=198 Identities=17% Similarity=0.236 Sum_probs=124.5
Q ss_pred cccEEEccCCccccccc-cccccCCCCEEeCCCCc-ccccCchHHHhccCcceEEEecC-CcccccCchhhcCCCCccEE
Q 048417 183 SLQSLHLRKNNLCGTIH-SLENCTALMTLDVGENE-LVENIPTWIRERFSRIVVLILRS-NKFYNLLPKELCDLAFLQIV 259 (453)
Q Consensus 183 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 259 (453)
+++.|++++|.+++++. .+..+++|+.|++++|. +.. ++...+..+++|++|++++ |.+....+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 34444444444433332 33344444444444443 322 2222223455566666655 55555555567777888888
Q ss_pred EccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCC-
Q 048417 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKN- 338 (453)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 338 (453)
++++|.+. .+|. +..+++| ..|++|++++|
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L-----------------------------------------------~~L~~L~l~~N~ 141 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYST-----------------------------------------------DIFFILEITDNP 141 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBC-----------------------------------------------CSEEEEEEESCT
T ss_pred eCCCCCCc-cccc-ccccccc-----------------------------------------------ccccEEECCCCc
Confidence 88888776 3443 3333332 11348888888
Q ss_pred cCCCcCCccccCCCCCc-EEEcCCccCCCCCCc-cccCCCCCCEEEcCCCc-CCCCCCccccCC-CCCCEEEccCCcccc
Q 048417 339 NFSGKIPLEVTNLKVLQ-SVNLSNNFFTGRIPE-SVGTMRSLESIDFSLNQ-LSGEIPQSMSSL-KFLNHLNLSNNNLTG 414 (453)
Q Consensus 339 ~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~ 414 (453)
.+++..+..+..+++|+ .|++++|.+. .+|. .+.. ++|++|++++|+ +.+..+..|..+ ++|++|++++|++++
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 78766666788888888 8888888887 5543 4444 788899999885 776666778888 889999999888885
Q ss_pred cCCCCcccceeecccCCCCC
Q 048417 415 KIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 415 ~~~~~~~l~~L~~l~l~~n~ 434 (453)
+|.. .+++|+.+++++++
T Consensus 220 -l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 220 -LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp -CCCT-TCTTCSEEECTTC-
T ss_pred -CChh-HhccCceeeccCcc
Confidence 4443 67788888887764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=168.24 Aligned_cols=210 Identities=19% Similarity=0.272 Sum_probs=164.1
Q ss_pred EEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcc
Q 048417 138 ILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL 217 (453)
Q Consensus 138 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 217 (453)
.+.+..+.+++.. ....+++|++|+++++.+.. .+ .+..+++|+.|++++|.+..... +..+++|+.|++++|.+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 3345555555322 25668899999999998884 44 57888999999999999887766 88889999999999988
Q ss_pred cccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhh
Q 048417 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~ 297 (453)
.+ .+ .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+ ++. +
T Consensus 98 ~~-~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~-~~~-l----------------------- 147 (308)
T 1h6u_A 98 KN-VS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN-ISP-L----------------------- 147 (308)
T ss_dssp SC-CG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-G-----------------------
T ss_pred CC-ch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc-Ccc-c-----------------------
Confidence 65 33 2346788888888888886642 37788888888888888763 221 1
Q ss_pred hhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCC
Q 048417 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRS 377 (453)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 377 (453)
..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+ ++. +..+++
T Consensus 148 ---------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~ 196 (308)
T 1h6u_A 148 ---------------------------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-ISP-LASLPN 196 (308)
T ss_dssp ---------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GGGCTT
T ss_pred ---------------------------cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-Chh-hcCCCC
Confidence 346678999999999985433 8889999999999999984 443 888999
Q ss_pred CCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 378 LESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 378 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
|++|++++|++.+.. .+..+++|++|++++|++++.
T Consensus 197 L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 197 LIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred CCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 999999999998544 388999999999999999863
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=160.01 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=141.2
Q ss_pred CCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceecc
Q 048417 206 ALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNS 285 (453)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i 285 (453)
..+.++++++.+.. +|..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------- 80 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD---------- 80 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----------
T ss_pred CCeEEecCCCCccc-cCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc----------
Confidence 44556666665533 33322 24677777777777777777788889999999999988754444343
Q ss_pred ccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCC
Q 048417 286 HAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT 365 (453)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 365 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 81 ----------------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 81 ----------------------------------------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp ----------------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ----------------------------------------cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence 3556799999999999777778899999999999999999
Q ss_pred CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCCc
Q 048417 366 GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGNDL 435 (453)
Q Consensus 366 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~l 435 (453)
+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+. ...+++|+.+++++|++
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 66666788999999999999999977777899999999999999999976664 47899999999999964
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-19 Score=162.30 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=106.8
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 91 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~ 91 (453)
+++|++|++++|.++. .+ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.. +.+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh--HccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEE
Confidence 4555555555555533 22 35555555555555555533 222 25555555555555555543 2344455555555
Q ss_pred ccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC
Q 048417 92 LGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 92 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
+++|.+.... .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.
T Consensus 114 l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 114 LTSTQITDVT---------------------------PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CTTSCCCCCG---------------------------GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCCCCCch---------------------------hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence 5555444321 133466666666666666632 22 566666666666666666
Q ss_pred CCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccc
Q 048417 172 GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN 244 (453)
Q Consensus 172 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 244 (453)
+. +. +..+++|+.|++++|.+++... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++..
T Consensus 165 ~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DL-TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEEC
T ss_pred CC-hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeec
Confidence 32 22 5666666667766666655443 5566667777777776654332 3456677777777776644
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-19 Score=154.90 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=48.0
Q ss_pred Cccc-EEecCCCcCCCcCCccccCCCCCcEEEcCCcc-CCCCCCccccCC-CCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 048417 328 NLVR-IIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNF-FTGRIPESVGTM-RSLESIDFSLNQLSGEIPQSMSSLKFLNH 404 (453)
Q Consensus 328 ~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 404 (453)
++|+ +|++++|+++...+..+.. ++|+.|++++|+ +.+..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCce
Confidence 3455 6666666665222333333 667777777774 664445566667 77777777777776 33333 5667777
Q ss_pred EEccCC
Q 048417 405 LNLSNN 410 (453)
Q Consensus 405 L~l~~n 410 (453)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 777665
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=162.01 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=41.4
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCC-ccccccccccE-EEccCCcccccc-ccccccCCCCEE
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQS-LHLRKNNLCGTI-HSLENCTALMTL 210 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~-~~~~~~~~L~~L 210 (453)
+++++|++++|+++...+..|.++++|++|++++|.+.+.++ ..|..++++.. +.+.+|+++.+. ..+..+++|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345555555555553222345555555555555555433222 23445555443 333445554443 344555555555
Q ss_pred eCCCCccc
Q 048417 211 DVGENELV 218 (453)
Q Consensus 211 ~l~~~~~~ 218 (453)
++++|.+.
T Consensus 110 ~l~~n~l~ 117 (350)
T 4ay9_X 110 LISNTGIK 117 (350)
T ss_dssp EEEEECCS
T ss_pred cccccccc
Confidence 55555553
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=154.84 Aligned_cols=241 Identities=15% Similarity=0.153 Sum_probs=139.1
Q ss_pred cEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc--ccccccCCCCEEeCCC
Q 048417 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGE 214 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~ 214 (453)
++++.++++++ .+|..+ ..++++|++++|.++...+..|.++++|++|++++|.+.+.. ..+.++++++.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~---- 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI---- 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE----
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh----
Confidence 45566666666 455433 345666666666666443345666666666666666654322 234444444432
Q ss_pred CcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcc-hhh
Q 048417 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA-IQY 293 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~-~~~ 293 (453)
+.+.+|.+....+..|..+++|++|++++|++....+..+....++..+++..+.. ...
T Consensus 85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 22233333333344444444455555554444432223333333333333332111 000
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCC-ccCCCCCC-cc
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSN-NFFTGRIP-ES 371 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~-~~ 371 (453)
... .+......++.|++++|+++. ++......++|++|++.+ |.+. .+| ..
T Consensus 145 ~~~-------------------------~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~ 197 (350)
T 4ay9_X 145 ERN-------------------------SFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDV 197 (350)
T ss_dssp CTT-------------------------SSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTT
T ss_pred ccc-------------------------chhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHH
Confidence 000 000112458899999999984 444444567899999986 5555 666 57
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~ 434 (453)
|..+++|++||+++|+++...+.. +.+|+.|.+.++.-...+|.+..+++|+.+++.++.
T Consensus 198 f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred hccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 899999999999999999444334 556777777666544478888899999999997654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=159.82 Aligned_cols=184 Identities=21% Similarity=0.280 Sum_probs=137.8
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEcc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLG 93 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~ 93 (453)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.++..+. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 78899999998866 55544 378999999999884 677 346889999999998887655 444 89999999
Q ss_pred CCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC
Q 048417 94 SNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN 173 (453)
Q Consensus 94 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 173 (453)
+|.+++... .+++|++|++++|.++.... .+++|++|++++|.+++ +|. +. ++|++|++++|.++ .
T Consensus 129 ~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTMLPE-LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSCCCC-CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCCCCC-cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 998887555 67788888888888774221 36788888888888884 565 54 78888888888888 5
Q ss_pred CCccccccccc-------cEEEccCCccccccccccccCCCCEEeCCCCcccccCchHH
Q 048417 174 LPISLGSLISL-------QSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWI 225 (453)
Q Consensus 174 ~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (453)
+|. +.. +| +.|++++|.++.++..+..+++|+.|++++|.+.+..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 555 443 56 88888888888777666668888888888888776555544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=150.61 Aligned_cols=189 Identities=15% Similarity=0.240 Sum_probs=133.9
Q ss_pred ccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 184 LQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 184 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
+..+.+..+.+... .....+++|+.|++++|.+... +. +..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCC-TT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccc-cchhhcCcccEEEccCCCcccC-hh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 33444454444432 2345678899999999988653 32 3568999999999999877544 88899999999999
Q ss_pred CcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc
Q 048417 264 NNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343 (453)
Q Consensus 264 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 343 (453)
|.+.+ ++ .+..+++|+.|+++++.+.... .+..+++|+.|++++|.+++.
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~----------------------------~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDIN----------------------------GLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCCCG----------------------------GGGGCTTCCEEECCSSCCCCC
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCCCh----------------------------hhcCCCCCCEEEccCCcCCcc
Confidence 99873 43 3777788888887777644321 123467788888888877643
Q ss_pred CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 344 IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
..+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|+++.
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4566777888888888877743 33 7777788888888887773 33 37777788888888887764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=139.16 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=58.7
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.. .++.|++|+
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~ 171 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLS 171 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHH
Confidence 4446677777777765555556677777777777777775444556777777777777776553 345677777
Q ss_pred ccCCcccccCCCC
Q 048417 407 LSNNNLTGKIPSS 419 (453)
Q Consensus 407 l~~n~l~~~~~~~ 419 (453)
++.|++++.+|..
T Consensus 172 ~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 172 EWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHCTTTBBCT
T ss_pred HHHHhCCceeecc
Confidence 7777777766643
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=144.69 Aligned_cols=170 Identities=21% Similarity=0.222 Sum_probs=91.9
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 91 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~ 91 (453)
+++|++|++++|.++.. ..+..+++|++|++++|++++..+ +..+++|++|++++|.++.. +.+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC-hhhccCCCCCEEE
Confidence 44555555555555332 224555555555555555533222 24555555555555555442 2244445555555
Q ss_pred ccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC
Q 048417 92 LGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 92 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
+++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 119 L~~n~i~~~---------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 119 LEHNGISDI---------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CTTSCCCCC---------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCcCCCC---------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 555544422 1223466666666666666633 34566666666666666666
Q ss_pred CCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccc
Q 048417 172 GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE 219 (453)
Q Consensus 172 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (453)
+..+ +..+++|+.|++++|.++.+. .+..+++|+.|++++|.+..
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence 4322 566666666666666665543 35666667777776666543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=141.79 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=116.2
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
.+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .+ ..
T Consensus 42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~-~~---------------------------------- 83 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NY-NP---------------------------------- 83 (197)
T ss_dssp HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CC-GG----------------------------------
T ss_pred hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cc-hh----------------------------------
Confidence 45667777777777653 33 4666777777777777543 11 11
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.
T Consensus 84 ----------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 84 ----------------ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ----------------GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ----------------hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 2346678999999999887677888889999999999999987677888899999999999998
Q ss_pred -CCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccC
Q 048417 388 -LSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 388 -l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~ 437 (453)
+. .++ .+..+++|++|++++|++++ ++.+..+++|+.+++++|++.+
T Consensus 148 ~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 148 AIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC----
T ss_pred Ccc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcccCC
Confidence 55 555 68889999999999999985 5677889999999999997654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-17 Score=140.46 Aligned_cols=137 Identities=20% Similarity=0.181 Sum_probs=102.6
Q ss_pred cceEEEecCCcccccCc-hhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhh
Q 048417 231 RIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309 (453)
Q Consensus 231 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 309 (453)
.++.|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~---------------------------------- 78 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE---------------------------------- 78 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT----------------------------------
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC----------------------------------
Confidence 34556666665555432 3466677777777777777633332332
Q ss_pred hhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 310 EDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 79 ----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 79 ----------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp ----------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred ----------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 3455788888888888677777888899999999999998777888888999999999999998
Q ss_pred CCCCccccCCCCCCEEEccCCcccccCC
Q 048417 390 GEIPQSMSSLKFLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 390 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 417 (453)
+..|..+..+++|++|++++|++.+..+
T Consensus 143 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 143 TVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7778888999999999999999886543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=155.94 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=54.4
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCC-------CEEEcCCCcCCCCCCccccCCC
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSL-------ESIDFSLNQLSGEIPQSMSSLK 400 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~ 400 (453)
++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..++
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 446777777777764 444 44 77777777777777 5555 433 56 77888888777 5666666677
Q ss_pred CCCEEEccCCcccccCC
Q 048417 401 FLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 401 ~L~~L~l~~n~l~~~~~ 417 (453)
+|+.|++++|++++.+|
T Consensus 231 ~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIR 247 (571)
T ss_dssp TTEEEECCSSSCCHHHH
T ss_pred CCCEEEeeCCcCCCcCH
Confidence 88888888887776544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=138.71 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=115.9
Q ss_pred CEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceecccc
Q 048417 208 MTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHA 287 (453)
Q Consensus 208 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~ 287 (453)
+.++++++.+.. +|..+ .+.++.|++++|.+....+..+..+++|++|++++|.+.+..|..+..
T Consensus 14 ~~v~c~~~~l~~-iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~----------- 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG----------- 78 (220)
T ss_dssp TEEECTTSCCSS-CCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEcCCCCcCc-CCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----------
Confidence 567777776643 44432 257788888888887766667777888888888888777444444433
Q ss_pred CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCC
Q 048417 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGR 367 (453)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 367 (453)
+++|++|++++|.++...+..+..+++|+.|++++|.+.+.
T Consensus 79 ---------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 79 ---------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp ---------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ---------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence 45578888888888865566677888888888888888877
Q ss_pred CCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 368 IPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 368 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
.+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77788888888888888888887777778888888888888888874
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=137.67 Aligned_cols=163 Identities=23% Similarity=0.244 Sum_probs=107.3
Q ss_pred cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccc
Q 048417 105 SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184 (453)
Q Consensus 105 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 184 (453)
.+++++|++++|.+...... .+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 34444555555544432221 22346777777777777775444556677777777777777775555556777777
Q ss_pred cEEEccCCccccccc-cccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 185 QSLHLRKNNLCGTIH-SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 185 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
++|++++|.++.... .+..+++|+.|++++|.+.+ .+...+..+++|++|++++|++.. .++.|++|+++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHH
Confidence 777777777776653 35677777888887777754 343434567778888888776543 356778888888
Q ss_pred CcCCCCcccccccccc
Q 048417 264 NNLSGEVPRCIHNLRA 279 (453)
Q Consensus 264 ~~~~~~~~~~~~~~~~ 279 (453)
|.+.+.+|..+..++.
T Consensus 175 n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHCTTTBBCTTSSBCT
T ss_pred HhCCceeeccCccccC
Confidence 8888888877776654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=139.05 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=122.0
Q ss_pred CCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceecc
Q 048417 206 ALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNS 285 (453)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i 285 (453)
+.+.++.+++.+.. +|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+
T Consensus 20 s~~~v~c~~~~l~~-ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~----------- 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF----------- 84 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----------
T ss_pred eCCEeEccCCCcCc-cCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc-----------
Confidence 35667777776633 44432 3678888888888877777778888888888888888763222222
Q ss_pred ccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCC
Q 048417 286 HAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT 365 (453)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 365 (453)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 85 ---------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 85 ---------------------------------------DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------------------------------------ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 23566788999999988666677788999999999999998
Q ss_pred CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 366 GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 366 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+.+
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 78888888999999999999998666677888999999999999988665533
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=158.36 Aligned_cols=191 Identities=19% Similarity=0.248 Sum_probs=108.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVG 213 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 213 (453)
..+..+.+..+.+.+..+ +..+..|+.|++++|.+.. ++ .+..+++|+.|++++|.+.++.. +..+++|+.|+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 334445555555553322 4556677777777777663 22 35666666666666666655443 5555555555555
Q ss_pred CCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhh
Q 048417 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQY 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~ 293 (453)
+|.+.+ . ..+..+++|+.|++++|.+.+ ++ .+
T Consensus 96 ~N~l~~-------------------------l--~~l~~l~~L~~L~Ls~N~l~~-l~-~l------------------- 127 (605)
T 1m9s_A 96 ENKIKD-------------------------L--SSLKDLKKLKSLSLEHNGISD-IN-GL------------------- 127 (605)
T ss_dssp SSCCCC-------------------------C--TTSTTCTTCCEEECTTSCCCC-CG-GG-------------------
T ss_pred CCCCCC-------------------------C--hhhccCCCCCEEEecCCCCCC-Cc-cc-------------------
Confidence 555432 1 134555666666666666552 11 11
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcccc
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 373 (453)
..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..| +.
T Consensus 128 -------------------------------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 128 -------------------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp -------------------------------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred -------------------------------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence 2244456666666666533 345566666666666666664333 66
Q ss_pred CCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 374 TMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
.+++|++|+|++|++.+. ..+..+++|+.|++++|++.+
T Consensus 173 ~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 666666666666666632 346666666666666666664
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=136.33 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=78.5
Q ss_pred EEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCc
Q 048417 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNN 265 (453)
Q Consensus 186 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (453)
.++.+++.++.++..+. ++++.|++++|.+.. ++...+..+++|+.|++++|.+....+..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45555555554443332 455666666655543 222223345556666666665555555555555666666666665
Q ss_pred CCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCC
Q 048417 266 LSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP 345 (453)
Q Consensus 266 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 345 (453)
+....+..+. .+++|++|++++|.+++..+
T Consensus 92 l~~l~~~~f~--------------------------------------------------~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 92 ITELPKSLFE--------------------------------------------------GLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp CCCCCTTTTT--------------------------------------------------TCTTCCEEECCSSCCCCCCT
T ss_pred CCccCHhHcc--------------------------------------------------CCCCCCEEECCCCCCCEeCH
Confidence 5521111111 23345555555555555555
Q ss_pred ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 346 LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555566666666666655444444555566666666666554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-17 Score=151.94 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=37.2
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc---cCCCCCCEEE
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM---SSLKFLNHLN 406 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~ 406 (453)
|++|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|++....+..+ ..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 3444444444443333344444445555555554443334444444455555555554442222222 2344455555
Q ss_pred ccCCccc
Q 048417 407 LSNNNLT 413 (453)
Q Consensus 407 l~~n~l~ 413 (453)
+++|+++
T Consensus 170 L~~N~l~ 176 (361)
T 2xot_A 170 LSSNKLK 176 (361)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 5555444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=158.08 Aligned_cols=195 Identities=19% Similarity=0.337 Sum_probs=150.6
Q ss_pred cccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEcc
Q 048417 183 SLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLA 262 (453)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 262 (453)
.+..+.+..+.+.... .+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~-l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKS-VQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCC-CTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCC-ChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3444555555544332 24567788888888887754 332 3467888888888888766544 7778888888888
Q ss_pred CCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC
Q 048417 263 DNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342 (453)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 342 (453)
+|.+.+ ++ . +..+++|+.|++++|.+.+
T Consensus 96 ~N~l~~-l~-~--------------------------------------------------l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 96 ENKIKD-LS-S--------------------------------------------------LKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp SSCCCC-CT-T--------------------------------------------------STTCTTCCEEECTTSCCCC
T ss_pred CCCCCC-Ch-h--------------------------------------------------hccCCCCCEEEecCCCCCC
Confidence 887762 22 1 1346778999999999974
Q ss_pred cCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccc
Q 048417 343 KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQL 422 (453)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l 422 (453)
+ ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++ ++.+..+
T Consensus 124 -l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l 196 (605)
T 1m9s_A 124 -I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGL 196 (605)
T ss_dssp -C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTC
T ss_pred -C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccC
Confidence 3 4588899999999999999854 678999999999999999996655 8999999999999999996 5778899
Q ss_pred ceeecccCCCCCccCCCCCC
Q 048417 423 QSFDASSFSGNDLCRAPLSG 442 (453)
Q Consensus 423 ~~L~~l~l~~n~l~~~~~~~ 442 (453)
++|+.|++++|++++.|...
T Consensus 197 ~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 197 KNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp TTCSEEECCSEEEECCCCCC
T ss_pred CCCCEEEccCCcCcCCcccc
Confidence 99999999999988877654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=135.99 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=53.8
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
|++|++++|+++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|..+..+++|++|++++
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence 455555555554333344455555555555555555333344455555555555555555 4455555555555555555
Q ss_pred CcccccCCC-CcccceeecccCCCC
Q 048417 410 NNLTGKIPS-STQLQSFDASSFSGN 433 (453)
Q Consensus 410 n~l~~~~~~-~~~l~~L~~l~l~~n 433 (453)
|++++..+. ...+++|+.+++++|
T Consensus 145 N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 555543332 244555555555555
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=141.93 Aligned_cols=171 Identities=20% Similarity=0.181 Sum_probs=119.2
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
++.++..++++.+.+++.. .+.++++|++|++++|.+ +.++ .+ ..+++|++|++++|+++..++ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i-~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI-QSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCC-CCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCc-ccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence 3556777788888875532 577888899999998888 4555 33 778889999999988887666 7888888888
Q ss_pred EccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCcc
Q 048417 91 SLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170 (453)
Q Consensus 91 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 170 (453)
++++|.+........++|++|++++|.+... ..+..+++|++|++++|++++ .+ .+..+++|++|++++|.+
T Consensus 91 ~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPSACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ECCSSCCSCCTTCCCSSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred ECCCCccCCcCccccCcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence 8888888764433336677777777766642 124457777777777777763 33 466677777777777777
Q ss_pred CCCCCccccccccccEEEccCCccccc
Q 048417 171 TGNLPISLGSLISLQSLHLRKNNLCGT 197 (453)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~l~~~~~~~~ 197 (453)
.+. ..+..+++|+.|++++|.+...
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 644 4456666677777766666543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=132.00 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=104.5
Q ss_pred cEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCC
Q 048417 161 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240 (453)
Q Consensus 161 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (453)
++++++++.++ .+|..+. ..++.|++++|.+++. .+...+..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~-----------------------~~~~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVL-----------------------EATGIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEE-----------------------CCCCCGGGCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCcc-----------------------CchhhhccCCCCCEEECCCC
Confidence 45666666665 3443332 2345555555555443 22222334555556666666
Q ss_pred cccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCc
Q 048417 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGRE 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (453)
.+.+..+..|..+++|++|++++|.+.+..+..+.
T Consensus 68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------------------------- 102 (220)
T 2v70_A 68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK--------------------------------------------- 102 (220)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT---------------------------------------------
T ss_pred cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc---------------------------------------------
Confidence 55555556677788888888888888744443333
Q ss_pred chhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC
Q 048417 321 AKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391 (453)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 391 (453)
.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++...
T Consensus 103 -----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 103 -----GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp -----TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred -----CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 345578888888888877778888889999999999999877788888899999999999988743
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=146.92 Aligned_cols=219 Identities=12% Similarity=0.013 Sum_probs=117.9
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcc----cccc-ccccccCCC
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL----CGTI-HSLENCTAL 207 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~-~~~~~~~~L 207 (453)
+++|+.+++.+ .++...+..|..+.+|+.+++.++.+....+..|..+.++..+....... ..+. ..+..+..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 66655556688888888888888877766666777777676666554221 1111 234445555
Q ss_pred C-EEeCCCCcccccCchHHHhc---cCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccccccccee
Q 048417 208 M-TLDVGENELVENIPTWIRER---FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTM 283 (453)
Q Consensus 208 ~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 283 (453)
+ .+.+.... ..+..++.. ..++..+.+.+.-...........+++|+.+++.+|.+......+|
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF--------- 246 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF--------- 246 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT---------
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh---------
Confidence 5 34443221 122222211 2334444443331111111111125566666666655542111222
Q ss_pred ccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCc-EEEcCCc
Q 048417 284 NSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQ-SVNLSNN 362 (453)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~n 362 (453)
..+++|+++++.++ +..+...+|..+++|+ .+++.+
T Consensus 247 -----------------------------------------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 247 -----------------------------------------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp -----------------------------------------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred -----------------------------------------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 22344555666554 4444555666666666 666665
Q ss_pred cCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 363 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
.+....+.+|.+|++|+.+++++|.+....+..|.++++|+.|+.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 454334466666666666666666666555556666666666653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=145.81 Aligned_cols=176 Identities=24% Similarity=0.209 Sum_probs=104.3
Q ss_pred ccEEEcccCccCCCCCccccccccccEEEccCCccccccc-ccc-ccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-SLE-NCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
-++++.+++.+. .+|..+. ..++.|++++|.++++.. .+. .+++|+.|++++|.+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-------------------- 76 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-------------------- 76 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--------------------
Confidence 356777777666 4454332 346666666666655442 232 445555555554444
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhc
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMK 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (453)
....+..|..+++|++|++++|.+....+..+.
T Consensus 77 -----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------ 109 (361)
T 2xot_A 77 -----NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS------------------------------------------ 109 (361)
T ss_dssp -----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTT------------------------------------------
T ss_pred -----CccChhhccCCCCCCEEECCCCcCCcCCHHHhC------------------------------------------
Confidence 444444556666666666666666522222222
Q ss_pred CCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccc---cCCCCCCEEEcCCCcCCCCCCc
Q 048417 318 GREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV---GTMRSLESIDFSLNQLSGEIPQ 394 (453)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~ 394 (453)
.+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|++....+.
T Consensus 110 --------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 110 --------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp --------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred --------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 24456677777777765666677777777777777777773322333 4577788888888877755445
Q ss_pred cccCCCC--CCEEEccCCccc
Q 048417 395 SMSSLKF--LNHLNLSNNNLT 413 (453)
Q Consensus 395 ~l~~l~~--L~~L~l~~n~l~ 413 (453)
.+..++. ++.|++++|++.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEE
T ss_pred HhhhccHhhcceEEecCCCcc
Confidence 6666665 377788877775
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=136.09 Aligned_cols=169 Identities=18% Similarity=0.287 Sum_probs=102.7
Q ss_pred ccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEc
Q 048417 182 ISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDL 261 (453)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 261 (453)
.++..++++++.++++. .+..+++|+.|++++|.+.. ++ . +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34444445555444333 34445555555555555533 22 1 2345566666666666554333 666677777777
Q ss_pred cCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCC
Q 048417 262 ADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFS 341 (453)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 341 (453)
++|.+.+ ++... . ++|+.|++++|+++
T Consensus 93 ~~N~l~~-l~~~~---------------------------------------------------~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 93 NRNRLKN-LNGIP---------------------------------------------------S-ACLSRLFLDNNELR 119 (263)
T ss_dssp CSSCCSC-CTTCC---------------------------------------------------C-SSCCEEECCSSCCS
T ss_pred CCCccCC-cCccc---------------------------------------------------c-CcccEEEccCCccC
Confidence 7776652 22110 0 34677777777776
Q ss_pred CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 342 GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
+. ..+..+++|+.|++++|++.+ ++ .+..+++|++|++++|++.+. ..+..+++|+.|++++|++++.
T Consensus 120 ~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 120 DT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 42 246677788888888887774 33 577778888888888877744 5677778888888888877754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=130.12 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=34.0
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCc-cCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNK-FTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
+++|++|++++|.+++..+..+..+++|++|++++|. +. ..+ .+..+++|+.|++++|.++... .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence 4444444444444443333444444444444444444 33 222 2344444444444444443322 333344444444
Q ss_pred CCCCc
Q 048417 212 VGENE 216 (453)
Q Consensus 212 l~~~~ 216 (453)
+++|.
T Consensus 188 l~~N~ 192 (197)
T 4ezg_A 188 AFSQT 192 (197)
T ss_dssp ECBC-
T ss_pred eeCcc
Confidence 44443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-17 Score=160.58 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=43.1
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCC-CccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI-PQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 407 (453)
+|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .++.+++|+.|++++|++.+.. |..+..+++|+.|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 3455555555554 444445555555555555555542 33 4455555555555555555333 455555555555555
Q ss_pred cCCcccccCC
Q 048417 408 SNNNLTGKIP 417 (453)
Q Consensus 408 ~~n~l~~~~~ 417 (453)
++|++++.++
T Consensus 541 ~~N~l~~~~~ 550 (567)
T 1dce_A 541 QGNSLCQEEG 550 (567)
T ss_dssp TTSGGGGSSS
T ss_pred cCCcCCCCcc
Confidence 5555554433
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=125.02 Aligned_cols=105 Identities=26% Similarity=0.324 Sum_probs=64.4
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
+|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++....+..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3566666666665 445556666666666666666664444556666666666666666665555566666666666666
Q ss_pred CCcccccCCC-CcccceeecccCCCCC
Q 048417 409 NNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 409 ~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
+|.+++..+. ...+++|+.+++++|+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 6666644443 2556666666666664
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=126.41 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=90.7
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 45668999999999988888889999999999999999997777788999999999999999998888999999999999
Q ss_pred EccCCcccccCCCCcccceeecccCCCCC-ccCCCCC
Q 048417 406 NLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLS 441 (453)
Q Consensus 406 ~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~ 441 (453)
++++|++.+..+.......++...+.++. .|+.|..
T Consensus 132 ~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp ECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred EeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 99999998765432111223333443332 5555443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=122.61 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=60.0
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCC-CccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI-PQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 407 (453)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 345555555555433 44555566666666666665445555555666666666666665321 145555666666666
Q ss_pred cCCcccccCC----CCcccceeecccCCCCCccCCC
Q 048417 408 SNNNLTGKIP----SSTQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 408 ~~n~l~~~~~----~~~~l~~L~~l~l~~n~l~~~~ 439 (453)
++|++++..+ .+..+++|+.+++++|++...|
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 6666664433 2355566666666666554444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-16 Score=157.63 Aligned_cols=109 Identities=23% Similarity=0.368 Sum_probs=98.5
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
..|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++.+++|+.|++++|++++ +| .+..+++|++|++
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 358999999999985 565 889999999999999999 889999999999999999999995 66 8999999999999
Q ss_pred cCCccccc--CCCCcccceeecccCCCCCccCCCCC
Q 048417 408 SNNNLTGK--IPSSTQLQSFDASSFSGNDLCRAPLS 441 (453)
Q Consensus 408 ~~n~l~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~ 441 (453)
++|++++. ++.+..+++|+.+++++|++++.|..
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 99999987 45568999999999999999988754
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=120.81 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=57.5
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
+|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 35555555555554444445555556666666665553333444555566666666665554444445555566666666
Q ss_pred CCcccccCCCC-cccceeecccCCCCC
Q 048417 409 NNNLTGKIPSS-TQLQSFDASSFSGND 434 (453)
Q Consensus 409 ~n~l~~~~~~~-~~l~~L~~l~l~~n~ 434 (453)
+|++++.++.. ..+++|+.+++++|+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCC
Confidence 66555444333 445555566665553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=132.35 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=46.2
Q ss_pred cccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcce-EEEecCCcccccCchhhcCCCCccE
Q 048417 181 LISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIV-VLILRSNKFYNLLPKELCDLAFLQI 258 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~ 258 (453)
+++|+.+++.+|.++.+. ..|.+|.+|+.+++..+ + ..++...|..+.+|+ .+.+.. .+....+.+|..|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 344444444444444433 33444444444444443 2 223333444444554 555544 333334445555555555
Q ss_pred EEccCCcCCCCccccccccccccee
Q 048417 259 VDLADNNLSGEVPRCIHNLRAMVTM 283 (453)
Q Consensus 259 L~l~~~~~~~~~~~~~~~~~~L~~l 283 (453)
+++.++.+....+.+|..+++|+.+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEeCCCccCccchhhhcCCcchhhh
Confidence 5555555543333455555555444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=119.24 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=68.1
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC-CccccCCCCCCEEEcCCCcCCCCCC---ccccCCCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI-PESVGTMRSLESIDFSLNQLSGEIP---QSMSSLKFL 402 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L 402 (453)
+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|++.+..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 556788888888887656777767888888888888887432 2677888888888888888885544 477888888
Q ss_pred CEEEccCCccccc
Q 048417 403 NHLNLSNNNLTGK 415 (453)
Q Consensus 403 ~~L~l~~n~l~~~ 415 (453)
++|++++|.+...
T Consensus 150 ~~L~l~~n~~~~~ 162 (168)
T 2ell_A 150 TYLDGYDREDQEA 162 (168)
T ss_dssp CEETTEETTSCBC
T ss_pred cEecCCCCChhhc
Confidence 8888888887743
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=120.40 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=98.1
Q ss_pred cCcccEEecCCCcCCCcCCc-cccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPL-EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
..+|++|++++|.+++..+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34799999999999866554 48899999999999999998888999999999999999999998888889999999999
Q ss_pred EccCCcccccCCCC-cccceeecccCCCCCc
Q 048417 406 NLSNNNLTGKIPSS-TQLQSFDASSFSGNDL 435 (453)
Q Consensus 406 ~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l 435 (453)
++++|++++.+|.. ..+++|+.+++++|++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 99999999886654 7899999999999964
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-13 Score=127.76 Aligned_cols=317 Identities=11% Similarity=0.026 Sum_probs=159.3
Q ss_pred CCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccc
Q 048417 25 LGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLI 104 (453)
Q Consensus 25 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 104 (453)
++.+...+|.+|.+|+++.+.. .+ ..++...|.+|.+|+.+++.++--.-....+.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i-~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TV-REIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TC-CEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-Cc-cCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3445667888888888888864 35 455555568888888888876522223445667777776655433 11111111
Q ss_pred cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccc
Q 048417 105 SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184 (453)
Q Consensus 105 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 184 (453)
+. .+..++....... .......|..+.+|+.+.+.++... .....|..+.+|
T Consensus 136 F~-------------------------~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 FK-------------------------GCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKL 187 (394)
T ss_dssp TT-------------------------TCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred ee-------------------------cccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccCCCCc
Confidence 11 1111111111100 0011122344444444444332211 222334444444
Q ss_pred cEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 185 QSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 185 ~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
+.+.+..+ ++.+. ..+..+..|+.+.+..+... ..... .....|+.+.+.... .......+..+..++.+.+..
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~-~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFA-LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTT-TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECC
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhh-cccCCCceEEECCCc-eecccccccccccceeEEcCC
Confidence 44444333 21121 33344444444444332210 01111 123345555443321 122233455555566655554
Q ss_pred CcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc
Q 048417 264 NNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343 (453)
Q Consensus 264 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 343 (453)
+... .....+..+..++.+......+ ....+..+.+|+.+.+..+ ++.+
T Consensus 263 ~~~~-i~~~~F~~~~~l~~~~~~~~~i-----------------------------~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 263 NKLR-IGGSLFYNCSGLKKVIYGSVIV-----------------------------PEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp TTCE-ECSCTTTTCTTCCEEEECSSEE-----------------------------CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred Ccce-eeccccccccccceeccCceee-----------------------------ccccccccccccccccccc-ccee
Confidence 4322 2233344444444332221110 0112344667788887654 5445
Q ss_pred CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCC
Q 048417 344 IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 410 (453)
...+|..|++|+.++|..+ ++.....+|.+|++|+.+++..+ +......+|.++++|+.+++..+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5667888889999998754 55344577888999999998776 66566778889999999988654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=116.86 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=56.3
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l 407 (453)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+. .+..+..+++|++|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 345555555555433 4455566666666666666644555555566666666666666532 2255566666666666
Q ss_pred cCCcccccCC----CCcccceeecccCC
Q 048417 408 SNNNLTGKIP----SSTQLQSFDASSFS 431 (453)
Q Consensus 408 ~~n~l~~~~~----~~~~l~~L~~l~l~ 431 (453)
++|++++..+ ....+++|+.++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666664433 13555566666554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=115.29 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=92.1
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
.+.+++++++++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999988 5665553 7899999999999977788889999999999999999977777788999999999999
Q ss_pred CcccccCCC-CcccceeecccCCCCCccCCCCCCCCCCCcc
Q 048417 410 NNLTGKIPS-STQLQSFDASSFSGNDLCRAPLSGNCSEHVS 449 (453)
Q Consensus 410 n~l~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~ 449 (453)
|++++..+. ...+++|+.+++++| |+.|.|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-----~~~c~c~~l~~ 123 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN-----PWDCACSDILY 123 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-----CBCTTBGGGHH
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC-----CCCCCchhHHH
Confidence 999976665 478899999999998 55566665443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-14 Score=146.27 Aligned_cols=114 Identities=32% Similarity=0.395 Sum_probs=64.3
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..|..+++|++|++++|.+..++..+..+++|+.|+
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 3566666666666666 55555666666666666666666 455566666666666666666665555566666666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP 247 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 247 (453)
+++|.+.+..+..+.........+++.+|.+.+..|
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666666554444332211112234455555544433
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.4e-13 Score=112.83 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=77.9
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|++....+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 45578899999999877777899999999999999999977777899999999999999999966666789999999999
Q ss_pred ccCCccccc
Q 048417 407 LSNNNLTGK 415 (453)
Q Consensus 407 l~~n~l~~~ 415 (453)
+++|++...
T Consensus 133 L~~N~~~C~ 141 (193)
T 2wfh_A 133 IGANPLYCD 141 (193)
T ss_dssp CCSSCEECS
T ss_pred eCCCCeecC
Confidence 999998753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-14 Score=146.28 Aligned_cols=115 Identities=26% Similarity=0.351 Sum_probs=61.4
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
.++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|++++|.++.++..+..+++|+.|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 4555555555555555 44444445555555555555555 445555555555555555555554444444455555555
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCI 274 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 274 (453)
+++|.+ . .+|..|..+++|+.|++++|.+.+.+|..+
T Consensus 300 L~~N~l-------------------------~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 300 FFDNMV-------------------------T-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCSSCC-------------------------C-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCC-------------------------C-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 554444 3 234445555666666666666655444443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-13 Score=110.93 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=78.8
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45678888888888866666778899999999999999966666788999999999999999966666778899999999
Q ss_pred ccCCcccccCCCC
Q 048417 407 LSNNNLTGKIPSS 419 (453)
Q Consensus 407 l~~n~l~~~~~~~ 419 (453)
+++|++.+..+.+
T Consensus 131 l~~N~~~~~~~~l 143 (177)
T 2o6r_A 131 LHTNPWDCSCPRI 143 (177)
T ss_dssp CCSSCBCCCHHHH
T ss_pred ecCCCeeccCccH
Confidence 9999999776644
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=113.25 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=88.1
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 410 (453)
+.+++++++++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 78889988887 5665554 78999999999998777788888999999999999998666666788999999999999
Q ss_pred cccccCCC-CcccceeecccCCCCCccCCCCCCCCCCC
Q 048417 411 NLTGKIPS-STQLQSFDASSFSGNDLCRAPLSGNCSEH 447 (453)
Q Consensus 411 ~l~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~c~~~ 447 (453)
++++.++. ...+++|+.+++++| ++.|.|.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N-----~~~c~~~~~ 124 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN-----PWDCECRDI 124 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-----CBCTTBGGG
T ss_pred ccceeCHHHhccccCCCEEEeCCC-----CcccccccH
Confidence 99876665 577889999999888 445555543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=111.14 Aligned_cols=127 Identities=21% Similarity=0.191 Sum_probs=59.8
Q ss_pred cCcccEEeccCCCCC-CCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccc-ccccccccCCCCEE
Q 048417 133 LNKWQILYLSGNFLQ-GELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG-TIHSLENCTALMTL 210 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L 210 (453)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+ .+..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 455666666666655 34455555556666666666655533 344555555555555555554 22333334555555
Q ss_pred eCCCCcccccCchHHHhccCcceEEEecCCcccccCc---hhhcCCCCccEEEc
Q 048417 211 DVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP---KELCDLAFLQIVDL 261 (453)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 261 (453)
++++|.+.+......+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555544331111112234444444444444433322 23444444444443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-12 Score=121.26 Aligned_cols=263 Identities=8% Similarity=0.039 Sum_probs=183.4
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVL 90 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L 90 (453)
+..++.+.+.. .++.....+|.++ +|+.+.+..+ + ..++...|.++ +|+.+.+.+ .+.. ....+.++.+|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 46677777754 4666667778776 6888888765 5 44444444554 688888876 3433 34567788888888
Q ss_pred EccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccC
Q 048417 91 SLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNN 168 (453)
Q Consensus 91 ~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 168 (453)
++.+|.+....... ...|+.+.+..+ +.... ...|.++++|+.+++..+ ++......|.. .+|+.+.+.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-
Confidence 88887776544433 357888887644 33211 124456889999999864 44344455666 7899999954
Q ss_pred ccCCCCCccccccccccEEEccCCccc-----ccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 169 KFTGNLPISLGSLISLQSLHLRKNNLC-----GTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 169 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
.+.......|..+++|+.+.+.++.+. .+. ..|.+|++|+.+.+..+ + ..+....|..+.+|+.+.+..+ +
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I-RILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCCSCCEEEECTT-C
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-EEEhhhhhcCCCCccEEEECcc-c
Confidence 455466678899999999999887664 233 67889999999999853 4 4466667778899999999655 5
Q ss_pred cccCchhhcCCCCccEEEccCCcCCCCccccccccc-ccceeccccCcchh
Q 048417 243 YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR-AMVTMNSHAGKAIQ 292 (453)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~i~~~~~~~ 292 (453)
......+|..+ +|+.+.+.++.........+..++ .+..+.+..+....
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 56667789999 999999999987755556677664 56677666554333
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=114.31 Aligned_cols=103 Identities=21% Similarity=0.187 Sum_probs=57.8
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc--cccCCCCCCEEE
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ--SMSSLKFLNHLN 406 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~ 406 (453)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 456666666665533 34555666666666666665332233355666666666666664 3333 555666666666
Q ss_pred ccCCcccccCCC----CcccceeecccCCCCC
Q 048417 407 LSNNNLTGKIPS----STQLQSFDASSFSGND 434 (453)
Q Consensus 407 l~~n~l~~~~~~----~~~l~~L~~l~l~~n~ 434 (453)
+++|+++...+. +..+++|+.+++++|.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666533221 3556666666666554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-12 Score=119.37 Aligned_cols=87 Identities=2% Similarity=-0.037 Sum_probs=56.4
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCC-CC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK-FL 402 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L 402 (453)
+..+++|+.+++.. +++.+...+|..|++|+.+.|..+ +......+|.++ +|+.+++.+|.........|..++ .+
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 34566677777763 355455566777777777777544 443444667777 777777777777655556666664 67
Q ss_pred CEEEccCCccc
Q 048417 403 NHLNLSNNNLT 413 (453)
Q Consensus 403 ~~L~l~~n~l~ 413 (453)
+.|++..+.+.
T Consensus 373 ~~l~vp~~~~~ 383 (401)
T 4fdw_A 373 TVIRVPAESVE 383 (401)
T ss_dssp CEEEECGGGHH
T ss_pred cEEEeCHHHHH
Confidence 77777666543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=108.71 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=82.2
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45799999999999888888999999999999999999666677899999999999999999777778999999999999
Q ss_pred cCCcccccCCCC
Q 048417 408 SNNNLTGKIPSS 419 (453)
Q Consensus 408 ~~n~l~~~~~~~ 419 (453)
++|++....+.+
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999998766544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=106.57 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=82.1
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45899999999999888889999999999999999999655566789999999999999999666667999999999999
Q ss_pred cCCcccccCCCCccc
Q 048417 408 SNNNLTGKIPSSTQL 422 (453)
Q Consensus 408 ~~n~l~~~~~~~~~l 422 (453)
++|++....+.+..+
T Consensus 113 ~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 113 YNNPWDCECRDIMYL 127 (174)
T ss_dssp CSSCBCTTBGGGHHH
T ss_pred CCCCcccccccHHHH
Confidence 999999665544333
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-15 Score=127.15 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCC-ccccCCCCCCEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIP-QSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L 405 (453)
+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..+++|++|++++|++.+..+ ..+..+++|++|
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 455677777777776 455555556777777777777773 44 56677778888888887774222 356777788888
Q ss_pred EccCCcccccCCC-----------CcccceeecccCCCCCccCC
Q 048417 406 NLSNNNLTGKIPS-----------STQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 406 ~l~~n~l~~~~~~-----------~~~l~~L~~l~l~~n~l~~~ 438 (453)
++++|++.+.+|. +..+++|+.+| +|+++..
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 8888887766554 45566777665 6655543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.5e-14 Score=130.34 Aligned_cols=160 Identities=18% Similarity=0.093 Sum_probs=88.2
Q ss_pred CcccEEEcCCCcccccchhhHhh----cCCCeEEEEccCCcccCC-CcC-ccCCCCCcEEEccCCcccccccc-------
Q 048417 37 KHLNYLDLSYSGIIGTIPNIFWS----SASQIYVLDLSFNQIHGQ-IPN-LTNAAQLEVLSLGSNSFSIALPL------- 103 (453)
Q Consensus 37 ~~L~~L~l~~~~~~~~~~~~~~~----~l~~L~~L~ls~~~~~~~-~~~-l~~~~~L~~L~l~~~~~~~~~~~------- 103 (453)
++|++|++++|.++......+.. ..++|++|++++|.++.. ... ...+.+|+.|++++|.+......
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666653332222211 124566666666655421 111 12233566666666665432211
Q ss_pred -ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCC----CchhhhcCCcccEEEcccCccCCCCC---
Q 048417 104 -ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGNLP--- 175 (453)
Q Consensus 104 -~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~--- 175 (453)
..+.|++|++++|.++......++..+...++|++|++++|.+++. ++..+...++|++|++++|.+++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1245677777777766655556666666677777777777776532 13345556677777777777663222
Q ss_pred -ccccccccccEEEccCCcccc
Q 048417 176 -ISLGSLISLQSLHLRKNNLCG 196 (453)
Q Consensus 176 -~~l~~l~~L~~L~l~~~~~~~ 196 (453)
..+...++|++|++++|.++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 223345677777777777754
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=105.57 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=41.7
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCC-cccEEEcccCccCCCCCccccccccccEEEccCCccccccccc-cccCCCCE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQ-NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL-ENCTALMT 209 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 209 (453)
.+++|++|++++|.++ .++. +..+. +|++|++++|.+.+. ..+..+++|++|++++|.++.+++.+ ..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3555666666666655 2333 33332 566666666655532 34455555555555555555444222 44455555
Q ss_pred EeCCCCcc
Q 048417 210 LDVGENEL 217 (453)
Q Consensus 210 L~l~~~~~ 217 (453)
|++++|.+
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 55555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=116.23 Aligned_cols=331 Identities=10% Similarity=0.018 Sum_probs=208.4
Q ss_pred ccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhh
Q 048417 51 GTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYR 129 (453)
Q Consensus 51 ~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 129 (453)
..+....|.++.+|+.+.+..+ ++. ...++.++.+|+.+++.++ +..... ..
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-------------------------~a 112 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGR-------------------------CT 112 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-------------------------TT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccc-------------------------hh
Confidence 4466666699999999999865 443 4557888999999988654 221111 12
Q ss_pred hcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCC
Q 048417 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALM 208 (453)
Q Consensus 130 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~ 208 (453)
+.++..|+.+.+..+ +.......|..+..+........ .......|..+.+|+.+.+.++.. .+. ..+.++.+|+
T Consensus 113 F~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 113 FSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLK 188 (394)
T ss_dssp TTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCC
T ss_pred hcccccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCce
Confidence 234666666555433 22233344555544433333322 223345788999999999976543 333 6788899999
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
.+.+..+ + ..+....+..+..|+.+.+..+.... .........|+.+.+.... .......+..+..++.+.+..+
T Consensus 189 ~i~l~~~-~-~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 189 SIKLPRN-L-KIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp BCCCCTT-C-CEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT
T ss_pred EEEcCCC-c-eEeCchhhccccccceeecCCCceEe--ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCC
Confidence 9999765 2 33455566678888888776654321 2233445788888876543 2233456667777777665443
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
... .....+..+..++.+......+ ....+..+.+|+.+.+.++ +....
T Consensus 264 ~~~---------------------------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 264 KLR---------------------------IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp TCE---------------------------ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEEC
T ss_pred cce---------------------------eeccccccccccceeccCceee---ccccccccccccccccccc-cceec
Confidence 210 1122234466677777665533 2346778999999999865 55344
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCC-ccCCCCCCCCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGND-LCRAPLSGNCSE 446 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~-l~~~~~~~~c~~ 446 (453)
..+|.+|++|+.+++..+ +.......|.++.+|+.+++..+ ++..-+.. ...++|+.+++..+- ..+. .=..|.+
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~~~~-~F~~c~~ 389 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQYRY-DFEDTTK 389 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGGGGG-GBCTTCE
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEEhhh-eecCCCC
Confidence 578999999999999755 66566789999999999999876 55322222 667788888885432 1121 2236777
Q ss_pred CccCC
Q 048417 447 HVSIP 451 (453)
Q Consensus 447 ~~~~~ 451 (453)
++.|+
T Consensus 390 L~~IK 394 (394)
T 4fs7_A 390 FKWIK 394 (394)
T ss_dssp EEEEC
T ss_pred CcEEC
Confidence 76653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-10 Score=107.70 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
++|+.+.+.. .+......+|..|.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ ++......|.++++|+.+++
T Consensus 288 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 3344444432 232233344555555666655543 33222345555556666655433 33344445555666666665
Q ss_pred cCCc
Q 048417 408 SNNN 411 (453)
Q Consensus 408 ~~n~ 411 (453)
.++.
T Consensus 365 ~~~~ 368 (394)
T 4gt6_A 365 SGSR 368 (394)
T ss_dssp SSCH
T ss_pred CCce
Confidence 5554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-13 Score=115.48 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=79.3
Q ss_pred cCcccEEeccCCCCCCCCch------hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCC
Q 048417 133 LNKWQILYLSGNFLQGELPD------CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA 206 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 206 (453)
.+.++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.++..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 44444444444444433332 55556666666666666553 33 455556666666666666554444444556
Q ss_pred CCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCc-hhhcCCCCccEEEccCCcCCCCccc----------ccc
Q 048417 207 LMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADNNLSGEVPR----------CIH 275 (453)
Q Consensus 207 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~ 275 (453)
|+.|++++|.+.+ ++ . +..+++|+.|++++|.+..... ..+..+++|++|++++|.+.+..|. .+.
T Consensus 95 L~~L~L~~N~l~~-l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp CSEEEEEEEECCC-HH-H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 6666666665544 22 1 2345666666666666544322 3455666666666666666543332 255
Q ss_pred cccccceec
Q 048417 276 NLRAMVTMN 284 (453)
Q Consensus 276 ~~~~L~~l~ 284 (453)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 666666664
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-12 Score=122.12 Aligned_cols=165 Identities=18% Similarity=0.068 Sum_probs=125.0
Q ss_pred cCCCeEEEEccCCcccCC-----CcCcc-CCCCCcEEEccCCccccccc----cccccCcEEECcCCCCCCchhhhhhhh
Q 048417 60 SASQIYVLDLSFNQIHGQ-----IPNLT-NAAQLEVLSLGSNSFSIALP----LISSYLIELDFSNNSISGSIFHFICYR 129 (453)
Q Consensus 60 ~l~~L~~L~ls~~~~~~~-----~~~l~-~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~ 129 (453)
.++.|+.|++++|.++.. ...+. ...+|+.|++++|.+..... ..+++|++|++++|.++......++..
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899999999998742 11222 23699999999999875332 235689999999999998777777766
Q ss_pred hc-ccCcccEEeccCCCCCCC----CchhhhcCCcccEEEcccCccCCCC----CccccccccccEEEccCCcccccc--
Q 048417 130 AN-ELNKWQILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGNL----PISLGSLISLQSLHLRKNNLCGTI-- 198 (453)
Q Consensus 130 ~~-~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~-- 198 (453)
+. ..+.|++|++++|.++.. ++..+...++|++|++++|.+.+.. +..+...++|+.|++++|.++...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 63 578999999999998742 3344577899999999999887432 344566789999999999987532
Q ss_pred ---ccccccCCCCEEeCCCCcccccCchH
Q 048417 199 ---HSLENCTALMTLDVGENELVENIPTW 224 (453)
Q Consensus 199 ---~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (453)
..+...++|++|++++|.+.+.....
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 44556789999999999986644433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=111.68 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=66.1
Q ss_pred EEecCCC-cCCCcCCccccCCCCCcEEEcCC-ccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 332 IIDFSKN-NFSGKIPLEVTNLKVLQSVNLSN-NFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 332 ~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
.++++++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++.+..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566665 666 4555 66677777777775 777655556677777777777777777766666677777777777777
Q ss_pred CcccccCCCCcccceeecccCCCCC
Q 048417 410 NNLTGKIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 410 n~l~~~~~~~~~l~~L~~l~l~~n~ 434 (453)
|++++.++..-....|+.+++.+|+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 7777555544222237777777664
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-09 Score=98.84 Aligned_cols=268 Identities=8% Similarity=0.076 Sum_probs=135.1
Q ss_pred CCCcCCC-cccEEEccCCcCCCCCCccccCCCcccEEEcCCCc---ccccchhhHhhcCCCeEEEEccCCcccCCCcCcc
Q 048417 7 DNWIPPF-QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSG---IIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLT 82 (453)
Q Consensus 7 ~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~ 82 (453)
.+|.+++ .|+.+.+... ++.....+|.+|.+|+.+.+..+. + ..+....|..+..|+.+.+.++--.-....+.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCV-KKIGRQAFMFCSELTDIPILDSVTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCC-CEECTTTTTTCTTCCBCGGGTTCSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCee-eEechhhchhcccceeeccCCccceehhhhhh
Confidence 4577775 5899998654 677778889999999999887653 4 44555555777777777766553222344566
Q ss_pred CCCCCcEEEccCCccc--cccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 83 NAAQLEVLSLGSNSFS--IALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
.+.+|+.+.+..+... ......+..|+.+.+..+-.. ..... | ....|+.+.+..+-.. .....+..+..+
T Consensus 135 ~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~-I~~~a----F-~~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTA-IEERA----F-TGTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTT----T-TTCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhcccccccccceeeeecccceecccccccccccceeeE-ecccc----c-cccceeEEEECCcccc-cccchhhhcccc
Confidence 6677777777543211 111112334555544332110 00000 0 1223333333221110 111111222222
Q ss_pred c-------------------------------------EEEcccCccCCCCCccccccccccEEEccCCccccccccccc
Q 048417 161 M-------------------------------------ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLEN 203 (453)
Q Consensus 161 ~-------------------------------------~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 203 (453)
+ .+.+... +.......|..+..|+.+.+..+...--...+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~ 286 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMN 286 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccceecCccccc
Confidence 1 1221111 1112223455566666666654432212245566
Q ss_pred cCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccccccccee
Q 048417 204 CTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTM 283 (453)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 283 (453)
++.|+.+.+... + ..++...|..+.+|+.+.+..+ +......+|..|.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 287 c~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFSSR-I-TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECCTT-C-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred ccccccccCCCc-c-cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 666666666432 2 2344455556666666666543 33334456666666766666543 332334566666666666
Q ss_pred ccccC
Q 048417 284 NSHAG 288 (453)
Q Consensus 284 ~i~~~ 288 (453)
++.++
T Consensus 363 ~~~~~ 367 (394)
T 4gt6_A 363 EYSGS 367 (394)
T ss_dssp EESSC
T ss_pred EECCc
Confidence 66554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=100.60 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred cCcccEEecCC-CcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 327 LNLVRIIDFSK-NNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
+++|+.|++++ |.+++..+..|..+++|+.|+|++|.+.+..+..|..+++|++|+|++|++.+..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 44578888886 888866777888899999999999999877778888999999999999999866666666666 9999
Q ss_pred EccCCccccc
Q 048417 406 NLSNNNLTGK 415 (453)
Q Consensus 406 ~l~~n~l~~~ 415 (453)
++.+|.+...
T Consensus 109 ~l~~N~~~c~ 118 (347)
T 2ifg_A 109 VLSGNPLHCS 118 (347)
T ss_dssp ECCSSCCCCC
T ss_pred EeeCCCccCC
Confidence 9999988753
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.6e-08 Score=91.20 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=16.5
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
....++.+.+..+ +.......+..+..|+.+.+..
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK 249 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCC
Confidence 3444555554332 2222334455566666665544
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-07 Score=84.91 Aligned_cols=312 Identities=7% Similarity=-0.008 Sum_probs=170.1
Q ss_pred cCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCc
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLE 88 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~ 88 (453)
....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ + ..++...|.++ .|+.+.+..+ ++.. ...+.. .+|+
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v-~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-V-TSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-C-CEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-c-eEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 4456899999964 467778889999999999999654 5 45666656776 6777777654 3322 233433 4799
Q ss_pred EEEccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 89 VLSLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 89 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.+.+..+-.. ..... -..+..+.+..+.-. .. ...+..+..++.+.+........... .....
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~~l~~~~~~~~v~~-i~----~~~f~~~~~l~~~~~~~~~~~~~~~~-~~~~~-------- 181 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNSSVKRIVIPKSVTT-IK----DGIGYKAENLEKIEVSSNNKNYVAEN-YVLYN-------- 181 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTCCCCEEEECTTCCE-EC----SCTTTTCTTCCEEEECTTCSSEEEET-TEEEE--------
T ss_pred cccCCCcccc-ccccccccceeeeeeccceeec-cc----cchhcccccccccccccccceeeccc-ceecc--------
Confidence 9988765221 11111 123444433322100 00 01122355555555543322100000 00000
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
. .......+.....+..+.+...........+..+..++.+.+.... ..+....+..+..|+.+.+..+ +....
T Consensus 182 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 182 K---NKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp T---TSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred c---ccceeccccccccccccccccceeEEeecccccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeC
Confidence 0 0011112333344444444333222222445556667777665432 2233334446677777777654 44444
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhh
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT 326 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (453)
..++..+.+|+.+.+..+ +......+ +..
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~a--------------------------------------------------F~~ 284 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLL--------------------------------------------------CSG 284 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTT--------------------------------------------------TTT
T ss_pred ccccceeehhcccccccc-ceeccccc--------------------------------------------------ccc
Confidence 567777888888877543 22111112 234
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKF 401 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 401 (453)
+.+|+.+.+.++.++.+...+|..|.+|+.+.|..+ ++.....+|.+|++|+.+.+..+ ++......|.+++.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 556777777776666555667888888888888754 54334467888888888888655 55455566766643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-08 Score=94.28 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=6.8
Q ss_pred cCCCCEEeCCCCcc
Q 048417 204 CTALMTLDVGENEL 217 (453)
Q Consensus 204 ~~~L~~L~l~~~~~ 217 (453)
.++|++|++..+.+
T Consensus 192 ~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 192 RPNLKSLEIISGGL 205 (362)
T ss_dssp CTTCSEEEEECSBC
T ss_pred CCCCcEEEEecCCC
Confidence 34455555544443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-08 Score=93.66 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=111.8
Q ss_pred CCCCcCCCcccEEEccCCcCC---------CCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC
Q 048417 6 NDNWIPPFQLATLGLRHCHLG---------SRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG 76 (453)
Q Consensus 6 ~~~~~~~~~L~~L~L~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~ 76 (453)
.++...+++|+.|.+...... +.+...+..+|+|++|+++++.- -.++. + .+++|++|++..|.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~--~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K--PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C--BCTTCSEEEEECSBCCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c--cCCCCcEEEEecCCCCh
Confidence 445556788888888654321 12334456788999999987631 11222 2 26889999998887753
Q ss_pred -CCcCc--cCCCCCcEEEccCC--cccc---------ccc-cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEec
Q 048417 77 -QIPNL--TNAAQLEVLSLGSN--SFSI---------ALP-LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141 (453)
Q Consensus 77 -~~~~l--~~~~~L~~L~l~~~--~~~~---------~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l 141 (453)
....+ ..+++|+.|+|+.+ ...+ ... ..+++|++|++.+|.+.......+... ..+++|++|++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdL 286 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEEC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEEC
Confidence 11222 26788888888532 1111 111 236789999999888775444333321 35789999999
Q ss_pred cCCCCCCC----CchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCc
Q 048417 142 SGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193 (453)
Q Consensus 142 ~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 193 (453)
+.|.+.+. ++..+..+++|++|++++|.+.+.....+.... ...++++.+.
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 99888743 233345678999999999887643322232210 3567777665
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-08 Score=82.12 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=35.6
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEec--cCCCCCCC----CchhhhcCCcccEEEcccCccC
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYL--SGNFLQGE----LPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
+|++|++++|.+.......++..+...+.|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 45555555555555555555555555666666666 55655522 1223344456666666666553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=7e-08 Score=80.88 Aligned_cols=115 Identities=12% Similarity=0.005 Sum_probs=55.8
Q ss_pred cccCCCcccEEEcCCC-cccccchhhH---hhcCCCeEEEEccCCcccC-----CCcCccCCCCCcEEEccCCccccccc
Q 048417 32 WLYSQKHLNYLDLSYS-GIIGTIPNIF---WSSASQIYVLDLSFNQIHG-----QIPNLTNAAQLEVLSLGSNSFSIALP 102 (453)
Q Consensus 32 ~l~~~~~L~~L~l~~~-~~~~~~~~~~---~~~l~~L~~L~ls~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~ 102 (453)
.+...++|++|+|++| .+.......+ +...+.|++|+|++|.+.. ....+...++|++|++++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 5533222111 1334556666666655542 12223334455555555555543211
Q ss_pred -------cccccCcEEEC--cCCCCCCchhhhhhhhhcccCcccEEeccCCCC
Q 048417 103 -------LISSYLIELDF--SNNSISGSIFHFICYRANELNKWQILYLSGNFL 146 (453)
Q Consensus 103 -------~~~~~L~~L~l--~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 146 (453)
...++|++|++ ++|.+.......++..+...+.|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 11234555555 555555555555555555555555555555544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-08 Score=78.44 Aligned_cols=92 Identities=10% Similarity=0.064 Sum_probs=65.7
Q ss_pred ccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCc-ccccchhhHhhc----CCCeEEEEccCC-cccC-
Q 048417 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSG-IIGTIPNIFWSS----ASQIYVLDLSFN-QIHG- 76 (453)
Q Consensus 4 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----l~~L~~L~ls~~-~~~~- 76 (453)
.+|........|+.||+++|.++...-..+.++++|++|+|++|. +++..-..+ .. +++|++|++++| ++++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHH
Confidence 356555555678999999998877766778889999999998885 544444444 33 357888888887 4664
Q ss_pred CCcCccCCCCCcEEEccCCc
Q 048417 77 QIPNLTNAAQLEVLSLGSNS 96 (453)
Q Consensus 77 ~~~~l~~~~~L~~L~l~~~~ 96 (453)
....+..+++|+.|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 34456667788888887774
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-07 Score=77.87 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=67.6
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCcc-CCCCCCccccCC----CCCCEEEcCCCc-CCCCCCccccCCCC
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNF-FTGRIPESVGTM----RSLESIDFSLNQ-LSGEIPQSMSSLKF 401 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~ 401 (453)
..|++||++++.+++.....+..+++|++|+|++|. +++.....++.+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999887666677889999999999995 654433445553 479999999985 77655566778999
Q ss_pred CCEEEccCCc-cc
Q 048417 402 LNHLNLSNNN-LT 413 (453)
Q Consensus 402 L~~L~l~~n~-l~ 413 (453)
|++|++++|. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999985 44
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-06 Score=76.90 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=33.3
Q ss_pred hcCcccEEecCCCcCCC--cCCccccCCCCCcEEEcCCccCCCCCCccccCCC--CCCEEEcCCCcCCCCC
Q 048417 326 TLNLVRIIDFSKNNFSG--KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR--SLESIDFSLNQLSGEI 392 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~ 392 (453)
.+++|++|++++|.+++ .++..+..+++|+.|+|++|.+.+. +.+..+. +|++|++++|++.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 35556666666666654 2233444556666666666665532 1222222 5555555555555433
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-06 Score=76.57 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=60.9
Q ss_pred cCCCCCcEEEcCCccCCC--CCCccccCCCCCCEEEcCCCcCCCCCCccccCCC--CCCEEEccCCcccccCCC------
Q 048417 349 TNLKVLQSVNLSNNFFTG--RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK--FLNHLNLSNNNLTGKIPS------ 418 (453)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~------ 418 (453)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. +.+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999986 3446667899999999999999854 3344444 899999999999876653
Q ss_pred --CcccceeecccC
Q 048417 419 --STQLQSFDASSF 430 (453)
Q Consensus 419 --~~~l~~L~~l~l 430 (453)
+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 245677776653
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=7.4e-05 Score=62.14 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=49.3
Q ss_pred cCCCeEEEEccCC-cccC-----CCcCccCCCCCcEEEccCCccccccccc-------cccCcEEECcCCCCCCchhhhh
Q 048417 60 SASQIYVLDLSFN-QIHG-----QIPNLTNAAQLEVLSLGSNSFSIALPLI-------SSYLIELDFSNNSISGSIFHFI 126 (453)
Q Consensus 60 ~l~~L~~L~ls~~-~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~~~L~~L~l~~~~l~~~~~~~~ 126 (453)
.-+.|++|+|+++ .+.. ....+.....|+.|+|++|.+....... -++|++|++++|.+...+...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666653 4432 2233444456666666666665433222 1366777777777776666677
Q ss_pred hhhhcccCcccEEeccCC
Q 048417 127 CYRANELNKWQILYLSGN 144 (453)
Q Consensus 127 ~~~~~~~~~L~~L~l~~~ 144 (453)
+..+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 766666666777777654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=60.72 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=34.5
Q ss_pred cCcEEECcCC-CCCCchhhhhhhhhcccCcccEEeccCCCCCC----CCchhhhcCCcccEEEcccCccC
Q 048417 107 YLIELDFSNN-SISGSIFHFICYRANELNKWQILYLSGNFLQG----ELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 107 ~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
.|++|+++++ .+.......++..+..-+.|++|+|++|++.+ .+...+..-+.|++|+|++|.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4555555553 55555555555555555566666666666552 22233334455566666655554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.001 Score=51.58 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=44.5
Q ss_pred cEEEcCCccCC-CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 355 QSVNLSNNFFT-GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 355 ~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
..++.+++.++ ..+|..+ .++|++|+|++|+++...+..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36777777775 2455433 3469999999999997767788889999999999998863
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0039 Score=48.21 Aligned_cols=57 Identities=14% Similarity=0.277 Sum_probs=44.9
Q ss_pred cEEecCCCcCC-CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 331 RIIDFSKNNFS-GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 331 ~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
..++.++++++ ..+|..+. ++|+.|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57888888886 24554433 57999999999999555577888999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 453 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 73.2 bits (178), Expect = 6e-15
Identities = 65/336 (19%), Positives = 110/336 (32%), Gaps = 52/336 (15%)
Query: 112 DFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171
+ + + + +C + + L LSG L P
Sbjct: 28 LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP-------------------- 67
Query: 172 GNLPISLGSLISLQSLHLRKN-NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFS 230
+P SL +L L L++ NL G I + + V +
Sbjct: 68 --IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 231 RIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA 290
+V L N LP + L L + N +SG +P + + T + +
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350
+ + + L L + + + F
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF---------- 235
Query: 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410
VG ++L +D N++ G +PQ ++ LKFL+ LN+S N
Sbjct: 236 -----------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 411 NLTGKIPSSTQLQSFDASSFSGND-LCRAPLSGNCS 445
NL G+IP LQ FD S+++ N LC +PL C+
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 58.6 bits (140), Expect = 4e-10
Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 2/215 (0%)
Query: 1 MTLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSS 60
+ + QL L + H ++ P +L K L LD SY+ + GT+P S
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 61 ASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISG 120
+ + N+I G IP+ + S+ + + + ++ + + +S
Sbjct: 149 -PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 121 SIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS 180
++ +K +NL LDL NN+ G LP L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
L L SL++ NNLCG I N N
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 48.2 bits (113), Expect = 8e-07
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 22 HCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNL 81
+ + + K+LN LDL + I GT+P + ++ L++SFN + G+IP
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQG 287
Query: 82 TNAAQLEVLSLGSNSFSIALPL 103
N + +V + +N PL
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPL 309
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 66.6 bits (161), Expect = 1e-12
Identities = 51/220 (23%), Positives = 73/220 (33%), Gaps = 19/220 (8%)
Query: 22 HCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNL 81
S L +L L + + I P ++ + L L+ NQ+ I L
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKD-IGTL 237
Query: 82 TNAAQLEVLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILY 140
+ L L L +N S PL + L EL N IS L +
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297
Query: 141 LSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS 200
E N +NL L L N + + SL LQ L N + + S
Sbjct: 298 --------EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD-VSS 346
Query: 201 LENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240
L N T + L G N++ + P +RI L L
Sbjct: 347 LANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 65.4 bits (158), Expect = 4e-12
Identities = 62/397 (15%), Positives = 124/397 (31%), Gaps = 58/397 (14%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
Q+ TL + S + +L ++ S + + P
Sbjct: 45 QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP------------------- 83
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANEL 133
+ NLT + + + + L + + L + + + + EL
Sbjct: 84 ----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193
+ I +S L Q + L+N +N
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT--------------LERLDISSN 185
Query: 194 LCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
I L T L +L N++ + P I + + L L N+ + L L
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASL 240
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
L +DLA+N +S P + L + + + + S + L
Sbjct: 241 TNLTDLDLANNQISNLAP--LSGLTKLTELK------LGANQISNISPLAGLTALTNLEL 292
Query: 314 VVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373
+ + L + + NN S P+ +L LQ + +NN + S+
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLA 348
Query: 374 TMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410
+ ++ + NQ+S P +++L + L L++
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 39/184 (21%), Positives = 59/184 (32%), Gaps = 15/184 (8%)
Query: 9 WIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLD 68
L L L L L S +L LDL+ + I P S +++ L
Sbjct: 215 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELK 269
Query: 69 LSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICY 128
L NQI P A + + I+ L L N+IS
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----- 324
Query: 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188
+ L K Q L+ + N + N N+ L +N+ + L +L + L
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 379
Query: 189 LRKN 192
L
Sbjct: 380 LNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 63.1 bits (152), Expect = 2e-11
Identities = 62/401 (15%), Positives = 125/401 (31%), Gaps = 58/401 (14%)
Query: 42 LDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIAL 101
L + + T+ + Q+ L I I + L ++ +N +
Sbjct: 27 TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDIT 82
Query: 102 PLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160
PL + + L+++ +NN I+ L + + L+ + +
Sbjct: 83 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142
Query: 161 MILDLSNNKFTGNLPISLGSLISLQSLHL----------RKNNLCGTIHSLENCTALMTL 210
I D+S +L L +N I L T L +L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202
Query: 211 DVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV 270
N++ + P I + + L L N+ + L L L +DLA+N +S
Sbjct: 203 IATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257
Query: 271 PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330
P + L + + + + S + L + + L +
Sbjct: 258 P--LSGLTKLTELK------LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309
Query: 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390
+ NN S P+ +L LQ + +NN +
Sbjct: 310 TYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD------------------------ 343
Query: 391 EIPQSMSSLKFLNHLNLSNNNLTGKIPSS--TQLQSFDASS 429
S+++L +N L+ +N ++ P + T++ +
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 47/365 (12%), Positives = 110/365 (30%), Gaps = 42/365 (11%)
Query: 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSN 167
++ +++ ++ +L++ L ++ D NL ++ SN
Sbjct: 24 KMKTVLGKTNVTDTVSQ------TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75
Query: 168 NKFTGNLPISLGSLISLQSLHLRKNNLCGTI-------HSLENCTALMTLDVGENELVEN 220
N+ T L +L L + + N + + D+ + + N
Sbjct: 76 NQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAM 280
+ + + L L + +L + ++ +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 281 VTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340
+ + + + ++ L E + + ++ +L + +D + N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253
Query: 341 SGKIPLEVTNLKVLQSVNLSNNFFTGRIP--------------------ESVGTMRSLES 380
S PL L L + L N + P + +++L
Sbjct: 254 SNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 381 IDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPL 440
+ N +S P +SSL L L +NN ++ + S L + + S N +
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP 368
Query: 441 SGNCS 445
N +
Sbjct: 369 LANLT 373
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.3 bits (155), Expect = 4e-12
Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 10/234 (4%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSN 95
LDL + I F + ++ L L N+I P +LE L L N
Sbjct: 31 PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 96 SFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM 155
+ L EL N I+ + L + G +
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGE 214
+ L + +++ T I G SL LHL N + SL+ L L +
Sbjct: 148 GMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG 268
N + + + + +N +P L D ++Q+V L +NN+S
Sbjct: 205 NSISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.8 bits (146), Expect = 7e-11
Identities = 48/318 (15%), Positives = 99/318 (31%), Gaps = 60/318 (18%)
Query: 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
+L L N + + N +NL L L NNK + P + L+ L+ L+L KN L
Sbjct: 34 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93
Query: 197 TIHSLE-NCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAF 255
+ L + ++ +++ + + +V L K + +
Sbjct: 94 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQM--IVVELGTNPLKSSGIENGAFQGMKK 151
Query: 256 LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVV 315
L + +AD N++ +L
Sbjct: 152 LSYIRIADTNITTIPQGLPPSL-------------------------------------- 173
Query: 316 MKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTM 375
+ N + + L L + LS N + S+
Sbjct: 174 ---------------TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 218
Query: 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435
L + + N+L ++P ++ K++ + L NNN++ + ++ S + +
Sbjct: 219 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277
Query: 436 CRAPLSGNCSEHVSIPKD 453
L N ++ I
Sbjct: 278 ---SLFSNPVQYWEIQPS 292
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.4 bits (132), Expect = 4e-09
Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 12/255 (4%)
Query: 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQ 73
L TL L + + P L L LS + + +P + ++ V + +
Sbjct: 56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVHENEITK 114
Query: 74 IHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANEL 133
+ + N N + L S + +L + + + +
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLP 170
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193
L+L GN + NL L LS N + SL + L+ LHL N
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230
Query: 194 LCGTIHSLENCTALMTLDVGENELVE-----NIPTWIRERFSRIVVLILRSNK--FYNLL 246
L L + + + + N + P + + + L SN ++ +
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290
Query: 247 PKELCDLAFLQIVDL 261
P + V L
Sbjct: 291 PSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.9 bits (128), Expect = 1e-08
Identities = 37/287 (12%), Positives = 76/287 (26%), Gaps = 19/287 (6%)
Query: 104 ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMIL 163
+ LD NN I+ L L L N + P + L L
Sbjct: 29 LPPDTALLDLQNNKITEIKDGDFK----NLKNLHTLILINNKISKISPGAFAPLVKLERL 84
Query: 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPT 223
LS N+ +L L+ + ++ + N ++ L +
Sbjct: 85 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144
Query: 224 WIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTM 283
+ ++ + + + L L L N ++ + L + +
Sbjct: 145 AFQ-GMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKL 200
Query: 284 NSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG- 342
A+ L L + +V + + +++ NN S
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI---QVVYLHNNNISAI 257
Query: 343 -----KIPLEVTNLKVLQSVNLSNNFFTGR--IPESVGTMRSLESID 382
P T V+L +N P + + ++
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.2 bits (108), Expect = 4e-06
Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 6/196 (3%)
Query: 230 SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289
+L L++NK + + +L L + L +N +S P L + + +
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT 349
+ + + L E V +V + + SG
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409
+K L + +++ T IP+ G SL + N+++ S+ L L L LS
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 410 NNLTGKIPSSTQLQSF 425
N+++ S
Sbjct: 205 NSISAVDNGSLANTPH 220
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 6e-08
Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 3/206 (1%)
Query: 66 VLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFH 124
+ L N+I L +L L SN + + L L+ + S + +
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184
+ L + L+L LQ P + L L L +N + L +L
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 185 QSLHLRKNNLCGTIH-SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243
L L N + + +L L + +N + P R+ + + + N
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLS 214
Query: 244 NLLPKELCDLAFLQIVDLADNNLSGE 269
L + L L LQ + L DN +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCD 240
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 48/278 (17%), Positives = 92/278 (33%), Gaps = 31/278 (11%)
Query: 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGE-NEL 217
+ L N+ + S + +L L L N L + AL+ N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNL 277
+ ++ R+ L L L P LA LQ + L DN L +L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 278 RAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSK 337
+ + H + I+++ E AF R L+ + + +
Sbjct: 153 GNLTHLFLHGNR---------------ISSVPERAF-----------RGLHSLDRLLLHQ 186
Query: 338 NNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMS 397
N + P +L L ++ L N + E++ +R+L+ + + N + +
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARP 245
Query: 398 SLKFLNHLNLSNNNLTGKIPSS---TQLQSFDASSFSG 432
+L S++ + +P L+ A+ G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 5e-07
Identities = 40/304 (13%), Positives = 73/304 (24%), Gaps = 54/304 (17%)
Query: 87 LEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFL 146
+ + L N S L + Q+ L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 147 QGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA 206
+ P + L L L P L +LQ L+L+ N L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------- 143
Query: 207 LMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNL 266
+P + L L N+ ++ + L L + L N +
Sbjct: 144 --------------LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 267 SGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT 326
+ P +L ++T+ A A L
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL---------------------- 227
Query: 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386
+ + + N + LQ S++ +P+ + + + N
Sbjct: 228 ----QYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAAN 279
Query: 387 QLSG 390
L G
Sbjct: 280 DLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 9/246 (3%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
+ L + I F + + + S T A LE L L N+
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 97 FSIALPLIS----SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPD 152
++ + L L + A + L N LQ D
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY----LQDNALQALPDD 147
Query: 153 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDV 212
+ + NL L L N+ + + L SL L L +N + +
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 213 GENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPR 272
+ +PT + L L N + + A+LQ + + + +P+
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266
Query: 273 CIHNLR 278
+
Sbjct: 267 RLAGRD 272
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 5e-05
Identities = 36/207 (17%), Positives = 60/207 (28%), Gaps = 25/207 (12%)
Query: 22 HCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNL 81
+ L S P+ + L+ L L G+ + + + + L L N + +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 82 TNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141
L L N IS L+ L L
Sbjct: 149 FRDLG--------------------NLTHLFLHGNRISSVPERAFR----GLHSLDRLLL 184
Query: 142 SGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL 201
N + P + + LM L L N + +L L +LQ L L N +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
Query: 202 ENCTALMTLDVGENELVENIPTWIRER 228
L +E+ ++P + R
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGR 271
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 9/145 (6%)
Query: 6 NDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIY 65
+D + L L L + S L+ L L + + P+ F +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 66 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF--SIALPLISSYLIELDFSNNSISGSIF 123
+ + N L L+ L L N + + ++L + S++ + S+
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL- 264
Query: 124 HFICYRANELNKWQILYLSGNFLQG 148
L + L+ N LQG
Sbjct: 265 ------PQRLAGRDLKRLAANDLQG 283
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.2 bits (109), Expect = 6e-07
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 162 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENI 221
+L L++ T L L+ + L L N L +L L L +N L
Sbjct: 2 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 222 PTWIRERFSRIVVLILRSNKFYNL-LPKELCDLAFLQIVDLADNNLSGE 269
R L+L +N+ + L L +++L N+L E
Sbjct: 60 GVANLPRLQ---ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 9/122 (7%)
Query: 89 VLSLGSNSFSIALPLIS-SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ 147
VL L ++ L + LD S+N + + L +
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA-------ALRCLEVLQASDNA 54
Query: 148 GELPDCWMNYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA 206
E D N L L L NN+ L S L L+L+ N+LC E
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114
Query: 207 LM 208
++
Sbjct: 115 ML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 6e-04
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 24/116 (20%)
Query: 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIP--------------------- 369
R++ + + + + + L ++ ++LS+N P
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 370 ESVGTMRSLESIDFSLNQL-SGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS 424
+ V + L+ + N+L Q + S L LNL N+L + +L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 40/289 (13%), Positives = 86/289 (29%), Gaps = 28/289 (9%)
Query: 136 WQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLC 195
WQ L L+G L ++ ++ Q ++ + L S +Q + L + +
Sbjct: 2 WQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIE 59
Query: 196 GTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
+ L C+ L L + L + I + + L L
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-------------------SNLVRL 100
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
++ L + C ++ + + + S L
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160
Query: 314 VVMKGREAKYERTLNLVRIIDFSKN-NFSGKIPLEVTNLKVLQSVNLSN-NFFTGRIPES 371
+ K + R + +D S + E L LQ ++LS
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220
Query: 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSST 420
+G + +L+++ G + +L HL ++ ++ T +
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388
L + +D + N + + + V+ + +F + E + ++ +D S + +
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVI 58
Query: 389 SGE-IPQSMSSLKFLNHLNLSNNNLTGKIPSS 419
+ +S L +L+L L+ I ++
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 44/322 (13%), Positives = 84/322 (26%), Gaps = 14/322 (4%)
Query: 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISG--SIFHFICYRANELNKWQILYLSG 143
Q L L + S +LP + +L L S NS++ + + + N + L
Sbjct: 39 QAHELELNNLGLS-SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 97
Query: 144 NFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLEN 203
L+ + + + S K SL L L + L
Sbjct: 98 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157
Query: 204 CTALM--TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDL 261
L T +N ++ +P S + + L + +
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217
Query: 262 ADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREA 321
+L + + +
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277
Query: 322 KYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESI 381
+ ++ S N ++P L+ L S N +PE ++L+ +
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPEL---PQNLKQL 329
Query: 382 DFSLNQLSGEIPQSMSSLKFLN 403
N L E P S++ L
Sbjct: 330 HVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 7e-05
Identities = 48/317 (15%), Positives = 89/317 (28%), Gaps = 25/317 (7%)
Query: 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193
+ L L+ L LP+ +L L S N T LP SL SL +
Sbjct: 38 RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 194 LCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253
L LE ++ + E ++++ L + +L +
Sbjct: 93 LSDLPPLLEYLG--VSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150
Query: 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAF 313
++ +L + + ++L+ + + + +L L +
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210
Query: 314 VVMKGREAKYERTLNLVRIIDFSKNNFS-----------GKIPLEVTNLKVLQSVNLSNN 362
+ + +L + + L L N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270
Query: 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQL 422
+ I SLE ++ S N+L E+P L+ L S N+L L
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPELPQNL 326
Query: 423 QSFDASSFSGNDLCRAP 439
+ N L P
Sbjct: 327 KQLH---VEYNPLREFP 340
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 9/203 (4%)
Query: 37 KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 96
K L LS + + +++ L+L ++ + T + +
Sbjct: 31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 97 FSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMN 156
S+ L + + + + + S+ EL + + N L+ P
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG---NELKTLPPGLLTP 146
Query: 157 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENE 216
L L L+NN T L L +L +L L++N+L L + N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
Query: 217 L-----VENIPTWIRERFSRIVV 234
+ W+++ + V
Sbjct: 207 WLCNCEILYFRRWLQDNAENVYV 229
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 347 EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406
EV+ + VN T +P + + S N L ++ L LN
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 407 LSNNN 411
L
Sbjct: 62 LDRAE 66
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 10/190 (5%)
Query: 256 LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVV 315
I+ L++N L + + +N + + Q + D
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL-----DLSHN 87
Query: 316 MKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTM 375
+TL + ++D S N + + L LQ + L N P +
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435
LE + + N L+ ++ L+ L+ L L N+L + GN
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN-- 205
Query: 436 CRAPLSGNCS 445
P NC
Sbjct: 206 ---PWLCNCE 212
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 4e-05
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 326 TLNLVRIIDFSKNNFSGKIPLEV-TNLKVLQSVNLSNNFFTGR----IPESVGTMRSLES 380
+L++ + +D S E+ L+ Q V L + T I ++ +L
Sbjct: 1 SLDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 381 IDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414
++ N+L + + +L
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 6e-05
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 354 LQSVNLSNNFFT-GRIPESVGTMRSLESIDFSLNQLSGE----IPQSMSSLKFLNHLNLS 408
+QS+++ + R E + ++ + + L+ I ++ L LNL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 409 NNNLTGKIPSS 419
+N L
Sbjct: 64 SNELGDVGVHC 74
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 9e-05
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE----LPDCWMNYQNLMIL 163
+ LD +S + + + L + Q++ L L + L L
Sbjct: 4 IQSLDIQCEELSDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196
+L +N+ + + S ++K +L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 1e-04
Identities = 43/423 (10%), Positives = 99/423 (23%), Gaps = 22/423 (5%)
Query: 14 QLATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSGI----IGTIPNIFWSSASQIY 65
Q + L C L S L L L+L + + + + + + +I
Sbjct: 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87
Query: 66 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHF 125
L L + G + ++ + +L S L + + + +
Sbjct: 88 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 147
Query: 126 ICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185
+ Y + + L N + + P L +L
Sbjct: 148 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 207
Query: 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245
N + + L +
Sbjct: 208 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT--LWIWEC 265
Query: 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLI 305
+++ ++ + + + L+
Sbjct: 266 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 325
Query: 306 ATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT 365
A V+ E ++ R+ D + + L+VL L++ +
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL---WLADCDVS 382
Query: 366 GR----IPESVGTMRSLESIDFSLNQLSGEIPQSMSS-----LKFLNHLNLSNNNLTGKI 416
+ ++ SL +D S N L + L L L + + ++
Sbjct: 383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442
Query: 417 PSS 419
Sbjct: 443 EDR 445
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 5e-04
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 10/114 (8%)
Query: 124 HFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN----LPISLG 179
R + L ++ L +L L++ + + L +L
Sbjct: 335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 394
Query: 180 SLISLQSLHLRKNNLCGTIHSL------ENCTALMTLDVGENELVENIPTWIRE 227
+ SL+ L L N L + L L + + E + ++
Sbjct: 395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.002
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 159 NLMILDLSNNKFTGN-LPISLGSLISLQSLHLRKNNLCGTI-----HSLENCTALMTLDV 212
++ LD+ + + L L Q + L L +L AL L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 213 GENEL----VENIPTWIRERFSRIVVLILRSNKFYN 244
NEL V + ++ +I L L++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 124 HFICYRANELNKWQILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGNLPISLG 179
+ ++L+L+ + L + +L LDLSNN + L
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Query: 180 SLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL 217
+ L + L S E L L+ + L
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 123 FHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182
+ I + + YLS Q N L L +NK + L SL
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLP 195
Query: 183 SLQSLHLRKNNLCGTIHSLENCTALMTLDV 212
+L +HL+ N + + L N + L + +
Sbjct: 196 NLIEVHLKNNQISD-VSPLANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.5 bits (83), Expect = 0.003
Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 14/215 (6%)
Query: 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGEN 215
N + + + T ++ L + +L + TI ++ L+ L++ +N
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73
Query: 216 ELVENIPT------WIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE 269
++ + P E + + ++ +L + LA +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 270 VPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT---LLEDAFVVMKGREAKYERT 326
+ ++ + + + S +A L K + +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193
Query: 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSN 361
L + + N S PL N L V L+N
Sbjct: 194 LPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 37.9 bits (86), Expect = 0.001
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 9/164 (5%)
Query: 104 ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMIL 163
I + EL ++N + + R L K ++ ++ P+ + ++ L
Sbjct: 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE---PNAFEGASHIQEL 83
Query: 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-SLENCTALMTLDVGENELVENIP 222
L NK L L++L+L N + + S E+ +L +L++ N N
Sbjct: 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143
Query: 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNL 266
+ R L P ++ D +QI DL +
Sbjct: 144 LAWFAEWLR--KKSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.3 bits (87), Expect = 0.002
Identities = 32/305 (10%), Positives = 84/305 (27%), Gaps = 29/305 (9%)
Query: 149 ELPDCWMNYQNLMILDLSNNKFTGN----LPISLGSLISLQSLHLRKNN----------- 193
+ + ++ + LS N L ++ S L+
Sbjct: 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81
Query: 194 ---LCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250
L + + D + + + + L L +N ++
Sbjct: 82 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141
Query: 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLE 310
V+ N R K Q LL+ + E
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201
Query: 311 DAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE 370
++ A + L + + S + + + + L+ + L++ + R
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261
Query: 371 SVGTM------RSLESIDFSLNQLSGEIPQSMSS-----LKFLNHLNLSNNNLTGKIPSS 419
+V L+++ N++ + +++ + + L L L+ N + +
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321
Query: 420 TQLQS 424
+++
Sbjct: 322 DEIRE 326
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.9 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.89 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.79 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.64 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.6 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.58 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.56 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.53 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.5 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.48 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.48 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.42 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.37 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.36 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.34 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.08 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.08 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.05 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.03 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.01 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.87 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.82 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.47 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.47 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=2.2e-28 Score=224.09 Aligned_cols=255 Identities=30% Similarity=0.507 Sum_probs=210.2
Q ss_pred CcccEEeccCCCCCC--CCchhhhcCCcccEEEccc-CccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCE
Q 048417 134 NKWQILYLSGNFLQG--ELPDCWMNYQNLMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMT 209 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~ 209 (453)
.+++.|+++++.+++ .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.+.+.. ..+..+..|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 367888888887775 3677888888888888886 6777778888888888888888888887765 55677788888
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCc-cEEEccCCcCCCCcccccccccccceeccccC
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFL-QIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
++++.|.+....|..+ ..++.++.+++++|.+.+.+|..+..+..+ +.+++++|.+.+..+..+..+.
T Consensus 130 l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~---------- 198 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------- 198 (313)
T ss_dssp EECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred cccccccccccCchhh-ccCcccceeeccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 8888887776666654 367888888888888877777777776665 7788888887766555443322
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
...+++.++...+..|..+..+++++.+++++|.+.+.+
T Consensus 199 -----------------------------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 237 (313)
T d1ogqa_ 199 -----------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp -----------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred -----------------------------------------ccccccccccccccccccccccccccccccccccccccc
Confidence 356888888887788888889999999999999998554
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC-ccCCCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLS 441 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~ 441 (453)
+ .+..+++|+.|++++|++++.+|+.+..+++|++|++++|+++|.+|....+++|+.+++++|+ +||.|+.
T Consensus 238 ~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred c-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC
Confidence 4 6888999999999999999999999999999999999999999999999999999999999999 9999865
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=1.7e-25 Score=210.96 Aligned_cols=341 Identities=22% Similarity=0.215 Sum_probs=216.3
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
++.+|++|++++++++.. +.+..+++|++|++++|++++ ++. ++.+++|++|++++|.+.... ++.++++|+.|
T Consensus 42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~~--l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L 115 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADIT-PLANLTNLTGL 115 (384)
T ss_dssp HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Ccc--ccCCccccccccccccccccc-ccccccccccc
Confidence 467889999999988653 457888999999999998854 443 378899999999999887644 47888899999
Q ss_pred EccCCccccccccc-cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCc
Q 048417 91 SLGSNSFSIALPLI-SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNK 169 (453)
Q Consensus 91 ~l~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 169 (453)
+++++.+....... ...+.......+.+......... ............ .....+.............+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 186 (384)
T d2omza2 116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL----TSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNK 186 (384)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTC----TTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSC
T ss_pred cccccccccccccccccccccccccccccccccccccc----cccccccccccc-----chhhhhccccccccccccccc
Confidence 99888877644433 23444555444443322111100 011111111111 111223334444444444443
Q ss_pred cCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchh
Q 048417 170 FTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKE 249 (453)
Q Consensus 170 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 249 (453)
.. ....+..+++++.+++++|.+++..+ ...+++++.+++++|.+.. .+. +..+++++.+++.+|.+.+.. .
T Consensus 187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~--~ 258 (384)
T d2omza2 187 VS--DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IGT--LASLTNLTDLDLANNQISNLA--P 258 (384)
T ss_dssp CC--CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCCCG--G
T ss_pred cc--cccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC-cch--hhcccccchhccccCccCCCC--c
Confidence 33 22345667778888888887765543 4556778888888887754 221 346778888888888876543 3
Q ss_pred hcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCc
Q 048417 250 LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNL 329 (453)
Q Consensus 250 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (453)
+..+++|++++++++.+.+ ++. +. .++.
T Consensus 259 ~~~~~~L~~L~l~~~~l~~-~~~-~~--------------------------------------------------~~~~ 286 (384)
T d2omza2 259 LSGLTKLTELKLGANQISN-ISP-LA--------------------------------------------------GLTA 286 (384)
T ss_dssp GTTCTTCSEEECCSSCCCC-CGG-GT--------------------------------------------------TCTT
T ss_pred ccccccCCEeeccCcccCC-CCc-cc--------------------------------------------------cccc
Confidence 6778888888888887763 221 22 2344
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
++.++++.+.+++ ...+..+++++.|++++|++.+. + .+..+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus 287 l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~ 360 (384)
T d2omza2 287 LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGH 360 (384)
T ss_dssp CSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCS
T ss_pred ccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCC
Confidence 5667777776653 23355667777777777777643 2 36677777777777777763 33 467777777777777
Q ss_pred CcccccCCCCcccceeecccCCCC
Q 048417 410 NNLTGKIPSSTQLQSFDASSFSGN 433 (453)
Q Consensus 410 n~l~~~~~~~~~l~~L~~l~l~~n 433 (453)
|++++.+ .+..+++|+.+++++|
T Consensus 361 N~l~~l~-~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 361 NQISDLT-PLANLTRITQLGLNDQ 383 (384)
T ss_dssp SCCCBCG-GGTTCTTCSEEECCCE
T ss_pred CcCCCCh-hhccCCCCCEeeCCCC
Confidence 7777543 3667777777777766
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.4e-24 Score=204.56 Aligned_cols=337 Identities=20% Similarity=0.225 Sum_probs=194.2
Q ss_pred cCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccc-cccccCcEEE
Q 048417 34 YSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALP-LISSYLIELD 112 (453)
Q Consensus 34 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~ 112 (453)
.++.+|++|+++++.+++ +. .+ +.+++|++|++++|++++.+ .+.++++|++|++++|.+....+ ..+++|+.|+
T Consensus 41 ~~l~~l~~L~l~~~~I~~-l~-gl-~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~ 116 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKS-ID-GV-EYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 116 (384)
T ss_dssp HHHTTCCEEECCSSCCCC-CT-TG-GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HHhCCCCEEECCCCCCCC-cc-cc-ccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccccccccccccccc
Confidence 345667777777776633 32 22 55677777777777766543 36666677777777766654321 2234455555
Q ss_pred CcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCC
Q 048417 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192 (453)
Q Consensus 113 l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 192 (453)
++++.+....... ....+.......+.+..................... .....+.............+
T Consensus 117 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 185 (384)
T d2omza2 117 LFNNQITDIDPLK------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSN 185 (384)
T ss_dssp CCSSCCCCCGGGT------TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSS
T ss_pred ccccccccccccc------cccccccccccccccccccccccccccccccccccc-----chhhhhcccccccccccccc
Confidence 5444443221110 122333333333322211111111111111111000 00111222222222332222
Q ss_pred ccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccc
Q 048417 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPR 272 (453)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 272 (453)
... .......+++++.++++++.+.+..+. ...++|+++++++|.+... ..+..+++|+.+++++|.+.+..
T Consensus 186 ~~~-~~~~~~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~-- 257 (384)
T d2omza2 186 KVS-DISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA-- 257 (384)
T ss_dssp CCC-CCGGGGGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred ccc-cccccccccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--
Confidence 221 223344555666666666655443221 2345566666666655432 23455556666666665554211
Q ss_pred ccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCC
Q 048417 273 CIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLK 352 (453)
Q Consensus 273 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 352 (453)
.+..+++|++++++++.+.+.. .+..++
T Consensus 258 --------------------------------------------------~~~~~~~L~~L~l~~~~l~~~~--~~~~~~ 285 (384)
T d2omza2 258 --------------------------------------------------PLSGLTKLTELKLGANQISNIS--PLAGLT 285 (384)
T ss_dssp --------------------------------------------------GGTTCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred --------------------------------------------------cccccccCCEeeccCcccCCCC--cccccc
Confidence 1134667899999999987433 366789
Q ss_pred CCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCC
Q 048417 353 VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432 (453)
Q Consensus 353 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~ 432 (453)
.++.+.+++|.+.+ + ..+..++++++|++++|++.+. + .+..+++|++|++++|++++ ++.+..+++|+++++++
T Consensus 286 ~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~ 360 (384)
T d2omza2 286 ALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGH 360 (384)
T ss_dssp TCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCS
T ss_pred cccccccccccccc-c-cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCC
Confidence 99999999999874 3 4578899999999999999854 3 38889999999999999984 67788999999999999
Q ss_pred CCccCCCCCCCCCCCccC
Q 048417 433 NDLCRAPLSGNCSEHVSI 450 (453)
Q Consensus 433 n~l~~~~~~~~c~~~~~~ 450 (453)
|++++.+.-..|++++.+
T Consensus 361 N~l~~l~~l~~l~~L~~L 378 (384)
T d2omza2 361 NQISDLTPLANLTRITQL 378 (384)
T ss_dssp SCCCBCGGGTTCTTCSEE
T ss_pred CcCCCChhhccCCCCCEe
Confidence 999988755667776654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.92 E-value=7.1e-25 Score=200.47 Aligned_cols=254 Identities=25% Similarity=0.374 Sum_probs=207.0
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccC-CCCCCCCchhhhcCCcccEEEcccCccCCCCCcccccccccc
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSG-NFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 185 (453)
+++.|+++++.+.+.. .++..+.++++|++|++++ |.+++.+|..+.++++|++|++++|.+.+..+..+..+++|+
T Consensus 51 ~v~~L~L~~~~l~g~~--~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred EEEEEECCCCCCCCCC--CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence 4566667666665421 2334555799999999986 788888999999999999999999999988888888899999
Q ss_pred EEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCC
Q 048417 186 SLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADN 264 (453)
Q Consensus 186 ~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (453)
.+++++|.+.... ..+..++.++.+++++|.+.+.+|..+......++.+.+..|.+.+..+..+..+..+ .+++..+
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~ 207 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 9999999876554 6788999999999999999888887765433445889999999988888888776544 7999988
Q ss_pred cCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcC
Q 048417 265 NLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKI 344 (453)
Q Consensus 265 ~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 344 (453)
...+.+|..+.. +++++.+++.++.+.+..
T Consensus 208 ~~~~~~~~~~~~--------------------------------------------------~~~l~~l~~~~~~l~~~~ 237 (313)
T d1ogqa_ 208 MLEGDASVLFGS--------------------------------------------------DKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp EEEECCGGGCCT--------------------------------------------------TSCCSEEECCSSEECCBG
T ss_pred cccccccccccc--------------------------------------------------cccccccccccccccccc
Confidence 887777665544 344688888888887544
Q ss_pred CccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc-cccc
Q 048417 345 PLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN-LTGK 415 (453)
Q Consensus 345 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~ 415 (453)
..+..+++|+.|++++|++++.+|++++.+++|++|++++|++++.+|+ +..+.+|+.+++++|+ +.|.
T Consensus 238 -~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp -GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred -cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence 4677889999999999999999999999999999999999999988885 5778899999999997 4554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=3.4e-22 Score=181.78 Aligned_cols=244 Identities=22% Similarity=0.284 Sum_probs=148.6
Q ss_pred cccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCC
Q 048417 135 KWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGE 214 (453)
Q Consensus 135 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 214 (453)
.+++|++++|+++...+..|..+++|++|++++|.+....|..|..++.|+.|++++|+++.++... ...++.|.+..
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~ 109 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHE 109 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhccc
Confidence 4555555555555333334555555555555555555444445555555555555555555443221 23455555555
Q ss_pred CcccccCchHHHhccCcceEEEecCCcc--cccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchh
Q 048417 215 NELVENIPTWIRERFSRIVVLILRSNKF--YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQ 292 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~ 292 (453)
+.+.+ .+...+........+....+.. .......+..+++|+.+++++|.+. .++..
T Consensus 110 n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~------------------- 168 (305)
T d1xkua_ 110 NEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG------------------- 168 (305)
T ss_dssp SCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS-------------------
T ss_pred cchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc-------------------
Confidence 55533 3333334445555555555432 2223345666677777777777665 33321
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccc
Q 048417 293 YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372 (453)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 372 (453)
.+++|+.|++.+|......+..+..++.++.|++++|.+.+..+.++
T Consensus 169 ---------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~ 215 (305)
T d1xkua_ 169 ---------------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215 (305)
T ss_dssp ---------------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred ---------------------------------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc
Confidence 13457777887777776667777777888888888888876666777
Q ss_pred cCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCC-------CCcccceeecccCCCCCc
Q 048417 373 GTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP-------SSTQLQSFDASSFSGNDL 435 (453)
Q Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-------~~~~l~~L~~l~l~~n~l 435 (453)
.++++|++|++++|.++ .+|+.+..+++|++|++++|+|+.... ....+++|+.+++++||+
T Consensus 216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 77888888888888777 567777788888888888888774321 124567778888888874
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=2.4e-21 Score=176.15 Aligned_cols=247 Identities=18% Similarity=0.222 Sum_probs=180.9
Q ss_pred ccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCcccccccccc
Q 048417 106 SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 185 (453)
Q Consensus 106 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 185 (453)
+.+++|++++|.++..... .|.++++|++|+++++.+....|..|..++.|++|++++|.++ .+|.. ....++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~--~~~~l~ 103 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQ 103 (305)
T ss_dssp TTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS--CCTTCC
T ss_pred CCCCEEECcCCcCCCcChh----HhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccc--hhhhhh
Confidence 3444445555444422211 2345888899999988888666777888899999999999888 44443 235788
Q ss_pred EEEccCCcccccc-ccccccCCCCEEeCCCCcccc-cCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 186 SLHLRKNNLCGTI-HSLENCTALMTLDVGENELVE-NIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 186 ~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
.|++.+|.+.... ..+........++...+.... ......+..+++|+.+++.+|.+... +.. .++++++|++.+
T Consensus 104 ~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~ 180 (305)
T d1xkua_ 104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDG 180 (305)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTT
T ss_pred hhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-Ccc--cCCccCEEECCC
Confidence 8888888887765 445566777888887764322 12223345678899999999887653 322 257899999999
Q ss_pred CcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc
Q 048417 264 NNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343 (453)
Q Consensus 264 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 343 (453)
|......+..+.. ++.+++|++++|.+.+.
T Consensus 181 n~~~~~~~~~~~~--------------------------------------------------~~~l~~L~~s~n~l~~~ 210 (305)
T d1xkua_ 181 NKITKVDAASLKG--------------------------------------------------LNNLAKLGLSFNSISAV 210 (305)
T ss_dssp SCCCEECTGGGTT--------------------------------------------------CTTCCEEECCSSCCCEE
T ss_pred CcCCCCChhHhhc--------------------------------------------------ccccccccccccccccc
Confidence 8887555544433 44568888999988877
Q ss_pred CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCcc------ccCCCCCCEEEccCCccc
Q 048417 344 IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS------MSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------l~~l~~L~~L~l~~n~l~ 413 (453)
.+.++..+++|+.|++++|.++ .+|+++..+++|++|++++|+++...... ...+++|+.|++++|+++
T Consensus 211 ~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 7888889999999999999998 77888999999999999999998544333 345788999999999986
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.1e-22 Score=178.53 Aligned_cols=226 Identities=20% Similarity=0.163 Sum_probs=150.2
Q ss_pred EeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcc
Q 048417 139 LYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENEL 217 (453)
Q Consensus 139 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 217 (453)
+.+++.+++ .+|..+ ...+++|++++|.++...+..|..+++|+.|++++|.+..+. ..+..+..++.+....+..
T Consensus 16 v~c~~~~L~-~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 345555555 445433 245667777777766544455666677777777776666554 3445556666665544333
Q ss_pred cccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhh
Q 048417 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~ 297 (453)
...++...+..+++|++|++++|.+....+..+..+..|+.+++++|.+++..+..+.
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~---------------------- 150 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR---------------------- 150 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhc----------------------
Confidence 2334333445566677777777766555555666667777777777777633333332
Q ss_pred hhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCC
Q 048417 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRS 377 (453)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 377 (453)
.+++|+.|++++|+++...+.++..+++|+.+++++|.+.+..|.+|..+++
T Consensus 151 ----------------------------~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~ 202 (284)
T d1ozna_ 151 ----------------------------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (284)
T ss_dssp ----------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ----------------------------cccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence 2445677888888887666777788888888888888888777788888888
Q ss_pred CCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 048417 378 LESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 378 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 417 (453)
|++|++++|.+.+..+..+..+++|++|++++|++....+
T Consensus 203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~ 242 (284)
T d1ozna_ 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (284)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence 8888888888887777788888888888888888875443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.4e-21 Score=174.07 Aligned_cols=225 Identities=18% Similarity=0.218 Sum_probs=179.6
Q ss_pred EEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEec-C
Q 048417 162 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILR-S 239 (453)
Q Consensus 162 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~ 239 (453)
++..++..++ .+|..+. ..+++|++++|+++.++ ..+.++++|++++++++.+.. ++...+.....+..+... .
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccc-cccccccccccccccccccc
Confidence 4566666777 5565443 56899999999998877 568889999999999998865 333444566777777664 4
Q ss_pred CcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCC
Q 048417 240 NKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (453)
+.+....+..+..+++|++|++++|.+....+..+
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------------------------------- 125 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--------------------------------------------- 125 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT---------------------------------------------
T ss_pred cccccccchhhcccccCCEEecCCccccccccccc---------------------------------------------
Confidence 55666667778888999999999988763333333
Q ss_pred cchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCC
Q 048417 320 EAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSL 399 (453)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 399 (453)
..+.+|+.+++++|.++++.+..+..+++|++|++++|.+.+..+.++.++++|+++++++|++++..|..|..+
T Consensus 126 -----~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l 200 (284)
T d1ozna_ 126 -----RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (284)
T ss_dssp -----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred -----chhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh
Confidence 234568999999999987777888899999999999999997777889999999999999999998889999999
Q ss_pred CCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCCCCC
Q 048417 400 KFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
++|++|++++|.+.+..+.. ..+++|+.+++++|| +.|.|.
T Consensus 201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~-----l~C~C~ 242 (284)
T d1ozna_ 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP-----WVCDCR 242 (284)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC-----EECSGG
T ss_pred hhcccccccccccccccccccccccccCEEEecCCC-----CCCCcc
Confidence 99999999999999766544 788999999999995 445564
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.8e-20 Score=166.52 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=142.9
Q ss_pred cCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceE
Q 048417 156 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVV 234 (453)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 234 (453)
....+.+++.+++.++ .+|..+. +.++.|++++|.+++++ ..+..+++|++|++++|.+.. ++. +..+++|++
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~--~~~l~~L~~ 81 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLPVLGT 81 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCTTCCE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc--ccccccccc
Confidence 4456667788888888 5665553 56888999999888776 567788888888888887754 332 134667777
Q ss_pred EEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHH
Q 048417 235 LILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFV 314 (453)
Q Consensus 235 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (453)
|++++|.+... +..+..+++|++|+++++.+....+..+
T Consensus 82 L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------------------------------------- 120 (266)
T d1p9ag_ 82 LDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL---------------------------------------- 120 (266)
T ss_dssp EECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTT----------------------------------------
T ss_pred ccccccccccc-ccccccccccccccccccccceeecccc----------------------------------------
Confidence 77777776543 4456666777777777766653222222
Q ss_pred HhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc
Q 048417 315 VMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ 394 (453)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 394 (453)
..+.++++|++.+|.++...+..+..++.++.+++++|++++..++.+..+++|++|++++|+++ .+|+
T Consensus 121 ----------~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~ 189 (266)
T d1p9ag_ 121 ----------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (266)
T ss_dssp ----------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred ----------ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh
Confidence 23455677888888877666666777788888888888888666677778888888888888887 6777
Q ss_pred cccCCCCCCEEEccCCcccc
Q 048417 395 SMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 395 ~l~~l~~L~~L~l~~n~l~~ 414 (453)
.+..+++|+.|+|++|++..
T Consensus 190 ~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 190 GFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp TTTTTCCCSEEECCSCCBCC
T ss_pred hHCCCCCCCEEEecCCCCCC
Confidence 77778888888888887764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=7.7e-20 Score=162.33 Aligned_cols=201 Identities=20% Similarity=0.150 Sum_probs=160.8
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
....+.+++.+++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++.+. .++.+++|++|+
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 83 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLD 83 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cccccccccccc
Confidence 3455666788888887 5675543 57888899988888655567888888999999888887554 456788899999
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
+++|.+..... .+..+++|+.++++++.+....+..+..+.++++|++.+|.+....+..+.
T Consensus 84 Ls~N~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~---------------- 145 (266)
T d1p9ag_ 84 LSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT---------------- 145 (266)
T ss_dssp CCSSCCSSCCC--CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT----------------
T ss_pred ccccccccccc--ccccccccccccccccccceeeccccccccccccccccccccceecccccc----------------
Confidence 99888755322 234678899999999988887777888899999999999998743333322
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
.+++++.+++++|++++..+..+..+++|+.|+|++|+++ .+|+.
T Consensus 146 ----------------------------------~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~ 190 (266)
T d1p9ag_ 146 ----------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190 (266)
T ss_dssp ----------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred ----------------------------------ccccchhcccccccccccCccccccccccceeecccCCCc-ccChh
Confidence 3556899999999999777888999999999999999999 88888
Q ss_pred ccCCCCCCEEEcCCCcCC
Q 048417 372 VGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~ 389 (453)
+..+++|+.|++++|+..
T Consensus 191 ~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 191 FFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTTCCCSEEECCSCCBC
T ss_pred HCCCCCCCEEEecCCCCC
Confidence 889999999999999875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=4.5e-17 Score=150.57 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=52.6
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
....++..+.+.+ ....+++|++|++++|++. .+|. .+++|++|++++|+++ .+|+. +++|++|++++
T Consensus 266 ~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~ 333 (353)
T d1jl5a_ 266 LYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEY 333 (353)
T ss_dssp CCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred hcccccccCcccc----ccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcC
Confidence 3445555554432 2234578888888888887 5664 3577888888888887 45543 45788888888
Q ss_pred CcccccCCCC
Q 048417 410 NNLTGKIPSS 419 (453)
Q Consensus 410 n~l~~~~~~~ 419 (453)
|+++ .+|..
T Consensus 334 N~L~-~lp~~ 342 (353)
T d1jl5a_ 334 NPLR-EFPDI 342 (353)
T ss_dssp SCCS-SCCCC
T ss_pred CcCC-CCCcc
Confidence 8887 45654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.79 E-value=5.5e-17 Score=149.95 Aligned_cols=96 Identities=30% Similarity=0.318 Sum_probs=67.3
Q ss_pred cccEEecCCCcCCCcCCccccCC-CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNL-KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
.+...++..+.+.+ +..+ ......++..+.+. . ....+++|++|++++|++. .+|.. +++|+.|++
T Consensus 245 ~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~-~---~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L 311 (353)
T d1jl5a_ 245 SLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIR-S---LCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIA 311 (353)
T ss_dssp TCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCS-E---ECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred cccccccccccccc-----cccccchhcccccccCccc-c---ccccCCCCCEEECCCCccC-ccccc---cCCCCEEEC
Confidence 35555555544431 1111 34556667666665 2 2345789999999999998 56643 689999999
Q ss_pred cCCcccccCCCCcccceeecccCCCCCccCCCC
Q 048417 408 SNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPL 440 (453)
Q Consensus 408 ~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 440 (453)
++|+++ .+|.. +++|+.+++++|++...|.
T Consensus 312 ~~N~L~-~l~~~--~~~L~~L~L~~N~L~~lp~ 341 (353)
T d1jl5a_ 312 SFNHLA-EVPEL--PQNLKQLHVEYNPLREFPD 341 (353)
T ss_dssp CSSCCS-CCCCC--CTTCCEEECCSSCCSSCCC
T ss_pred CCCcCC-ccccc--cCCCCEEECcCCcCCCCCc
Confidence 999998 56653 5689999999999888764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.3e-20 Score=177.55 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=67.9
Q ss_pred CcccEEEccCCcCCCC-CCccccCCCcccEEEcCCCcccccc----hhhHhhcCCCeEEEEccCCcccC-----CCcCcc
Q 048417 13 FQLATLGLRHCHLGSR-FPSWLYSQKHLNYLDLSYSGIIGTI----PNIFWSSASQIYVLDLSFNQIHG-----QIPNLT 82 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~ls~~~~~~-----~~~~l~ 82 (453)
++|+.||++++.+++. +...+..+++++.|+|++|.++... ...+ ..+++|++||+++|.++. ....+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 3577888888877553 2334566778888888888774322 2222 567778888888877752 111222
Q ss_pred -CCCCCcEEEccCCccccccc-------cccccCcEEECcCCCCCCchhhhhhh
Q 048417 83 -NAAQLEVLSLGSNSFSIALP-------LISSYLIELDFSNNSISGSIFHFICY 128 (453)
Q Consensus 83 -~~~~L~~L~l~~~~~~~~~~-------~~~~~L~~L~l~~~~l~~~~~~~~~~ 128 (453)
...+|+.|++++|.++.... ...++|++|++++|.+.......+..
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~ 134 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 134 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhh
Confidence 22367777777777654321 12456777777777666544444433
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=5.2e-17 Score=140.26 Aligned_cols=202 Identities=18% Similarity=0.261 Sum_probs=103.0
Q ss_pred EeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCccc
Q 048417 139 LYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELV 218 (453)
Q Consensus 139 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 218 (453)
++++.+++++.. .+..+.+|++|++.+|.+.. + +.+..+++|++|++++|.+.++. .+..+++++.+++++|.+.
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~ 98 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLK 98 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCS
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc-ccccccccccccccccccc
Confidence 344445554322 24455666666666666653 2 23556666666666666655433 2455556666666555543
Q ss_pred ccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhh
Q 048417 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLY 298 (453)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~ 298 (453)
. ++. +..+++|+.+.++++..... ..+...+.++.+.++++.+....+
T Consensus 99 ~-i~~--l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--------------------------- 146 (227)
T d1h6ua2 99 N-VSA--IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--------------------------- 146 (227)
T ss_dssp C-CGG--GTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG---------------------------
T ss_pred c-ccc--cccccccccccccccccccc--chhccccchhhhhchhhhhchhhh---------------------------
Confidence 2 111 12344455555544443222 123334455555555544431110
Q ss_pred hccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCC
Q 048417 299 ASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSL 378 (453)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 378 (453)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++. .++ .++.+++|
T Consensus 147 -------------------------~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L 197 (227)
T d1h6ua2 147 -------------------------LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DIS-PLASLPNL 197 (227)
T ss_dssp -------------------------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTC
T ss_pred -------------------------hccccccccccccccccccc--hhhcccccceecccCCCccC-CCh-hhcCCCCC
Confidence 12234456666666655422 22555666666666666665 232 35566666
Q ss_pred CEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 379 ESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 379 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
++|++++|++++ ++ .+..+++|++|+++
T Consensus 198 ~~L~Ls~N~lt~-i~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 198 IEVHLKNNQISD-VS-PLANTSNLFIVTLT 225 (227)
T ss_dssp CEEECTTSCCCB-CG-GGTTCTTCCEEEEE
T ss_pred CEEECcCCcCCC-Cc-ccccCCCCCEEEee
Confidence 666666666653 22 25566666666665
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=9.7e-19 Score=167.93 Aligned_cols=360 Identities=17% Similarity=0.074 Sum_probs=227.3
Q ss_pred CcCCCcccEEEccCCcCCCC----CCccccCCCcccEEEcCCCcccccchhhHhh----cCCCeEEEEccCCcccCC---
Q 048417 9 WIPPFQLATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSGIIGTIPNIFWS----SASQIYVLDLSFNQIHGQ--- 77 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~l~~L~~L~ls~~~~~~~--- 77 (453)
+..++++++|+|++|+++.. ++.++..+++|++|+|++|.++......+.. ...+|++|++++|.++..
T Consensus 23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~ 102 (460)
T d1z7xw1 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102 (460)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence 34478899999999998643 3455789999999999999985433333322 335799999999998752
Q ss_pred --CcCccCCCCCcEEEccCCccccccccc--------cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC
Q 048417 78 --IPNLTNAAQLEVLSLGSNSFSIALPLI--------SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 78 --~~~l~~~~~L~~L~l~~~~~~~~~~~~--------~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 147 (453)
...+..+++|++|++++|.+....... .........................+...+.++.++++++...
T Consensus 103 ~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~ 182 (460)
T d1z7xw1 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182 (460)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccc
Confidence 235678889999999999876532211 1134455555555554445555555666788888888877654
Q ss_pred CCCc----hhh-hcCCcccEEEcccCccCCCCC----ccccccccccEEEccCCccccc------cccccccCCCCEEeC
Q 048417 148 GELP----DCW-MNYQNLMILDLSNNKFTGNLP----ISLGSLISLQSLHLRKNNLCGT------IHSLENCTALMTLDV 212 (453)
Q Consensus 148 ~~~~----~~l-~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l 212 (453)
.... ..+ ........+.+.++.+..... ..+...+.++.+++.++.+... .........++.+++
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l 262 (460)
T d1z7xw1 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 262 (460)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred cccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccc
Confidence 2111 111 123456667777765542111 1233456788888888765421 133345667888888
Q ss_pred CCCcccccCchHH---HhccCcceEEEecCCcccccCchhh-----cCCCCccEEEccCCcCCCCcccccccccccceec
Q 048417 213 GENELVENIPTWI---RERFSRIVVLILRSNKFYNLLPKEL-----CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 213 ~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 284 (453)
++|.+........ ....+.++.+++++|.+.......+ .....|+.++++++.+.......+.
T Consensus 263 ~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~--------- 333 (460)
T d1z7xw1 263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS--------- 333 (460)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---------
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc---------
Confidence 8887654322222 1245677888888887654322221 2235677888877776532221111
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc----CCcccc-CCCCCcEEEc
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK----IPLEVT-NLKVLQSVNL 359 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~-~~~~L~~L~l 359 (453)
......++|++|++++|.+++. ++..+. ..+.|++|++
T Consensus 334 -------------------------------------~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L 376 (460)
T d1z7xw1 334 -------------------------------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 376 (460)
T ss_dssp -------------------------------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred -------------------------------------cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence 1123456789999999887642 223333 4567999999
Q ss_pred CCccCCCC----CCccccCCCCCCEEEcCCCcCCCCCC----cccc-CCCCCCEEEccCCcccc
Q 048417 360 SNNFFTGR----IPESVGTMRSLESIDFSLNQLSGEIP----QSMS-SLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 360 ~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~-~l~~L~~L~l~~n~l~~ 414 (453)
++|.+++. +.+.+..+++|++|++++|+++.... +.+. ....|+.|++.+|.+.+
T Consensus 377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 99988742 34456678899999999998874322 2232 33479999999998874
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=3.7e-16 Score=134.79 Aligned_cols=187 Identities=19% Similarity=0.242 Sum_probs=85.6
Q ss_pred cCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCcccccc-ccccccCcEEE
Q 048417 34 YSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIAL-PLISSYLIELD 112 (453)
Q Consensus 34 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~ 112 (453)
.++.+|++|++.++.+++ ++ .+ +.+++|++|++++|.++... .+.++++++++++++|.++... ...++.|++++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~l-~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~ 113 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTT-IE-GV-QYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (227)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TG-GGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HHcCCcCEEECCCCCCCc-ch-hH-hcCCCCcEeecCCceeeccc-cccccccccccccccccccccccccccccccccc
Confidence 344444444444444422 21 12 34444444444444444322 2444444444444444443221 11234444444
Q ss_pred CcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCC
Q 048417 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192 (453)
Q Consensus 113 l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 192 (453)
++++...... .+...+.++.+.++.+.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|
T Consensus 114 l~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n 183 (227)
T d1h6ua2 114 LTSTQITDVT------PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN 183 (227)
T ss_dssp CTTSCCCCCG------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred cccccccccc------hhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCC
Confidence 4444433211 112345555555555554422 1244555566666655555422 22455556666666666
Q ss_pred ccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEec
Q 048417 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILR 238 (453)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 238 (453)
+++.+ ..++.+++|++|++++|.+++ ++. .+.+++|+.|+++
T Consensus 184 ~l~~l-~~l~~l~~L~~L~Ls~N~lt~-i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 184 KISDI-SPLASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLT 225 (227)
T ss_dssp CCCCC-GGGGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEE
T ss_pred ccCCC-hhhcCCCCCCEEECcCCcCCC-Ccc--cccCCCCCEEEee
Confidence 55443 234555566666666665543 221 2355666666554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.7e-16 Score=137.25 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=107.3
Q ss_pred cccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecC-CcccccCchhhcCCCCccEEE
Q 048417 183 SLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRS-NKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 183 ~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 260 (453)
++++|++++|.++.++ ..+.++++|++|++++|.+...++...+..++.++++.+.. +.+....+..+..+++|++++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 4455555555554443 23445555555555555544433333334455555555433 344444555677777788888
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 340 (453)
+.++.+.. .+. +..+.+ +..+..+...++.+
T Consensus 110 l~~~~l~~-~~~-~~~~~~-----------------------------------------------l~~l~~~~~~n~~l 140 (242)
T d1xwdc1 110 ISNTGIKH-LPD-VHKIHS-----------------------------------------------LQKVLLDIQDNINI 140 (242)
T ss_dssp EESCCCCS-CCC-CTTTCB-----------------------------------------------SSCEEEEEESCTTC
T ss_pred cchhhhcc-ccc-cccccc-----------------------------------------------cccccccccccccc
Confidence 87777652 221 111111 23344444455555
Q ss_pred CCcCCccccCCC-CCcEEEcCCccCCCCCCccccCCCCCCEE-EcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCC
Q 048417 341 SGKIPLEVTNLK-VLQSVNLSNNFFTGRIPESVGTMRSLESI-DFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS 418 (453)
Q Consensus 341 ~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 418 (453)
....+..+..++ .++.|++++|++. .++......++++++ ++.+|++++..+..|..+++|++|++++|+++...+.
T Consensus 141 ~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 219 (242)
T d1xwdc1 141 HTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 219 (242)
T ss_dssp CEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred ccccccccccccccceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence 544444554443 5777777777776 333333344444444 4566667644455677777777777777777744333
Q ss_pred C-cccceeecccCC
Q 048417 419 S-TQLQSFDASSFS 431 (453)
Q Consensus 419 ~-~~l~~L~~l~l~ 431 (453)
. ..+++|+.+++.
T Consensus 220 ~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 220 GLENLKKLRARSTY 233 (242)
T ss_dssp SCTTCCEEESSSEE
T ss_pred HHcCCcccccCcCC
Confidence 2 666666666663
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.1e-16 Score=134.49 Aligned_cols=219 Identities=14% Similarity=0.097 Sum_probs=125.7
Q ss_pred cEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc--ccccccCCCCEEeCCC
Q 048417 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGE 214 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~ 214 (453)
+.+++++..++ .+|..+ ..++++|++++|.++...+..|.++++|++|++++|.+.... ..+..++.++.+.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 45555555555 445433 235666666666666443445666666666666666654432 3455666666666543
Q ss_pred -CcccccCchHHHhccCcceEEEecCCcccccCch-hhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchh
Q 048417 215 -NELVENIPTWIRERFSRIVVLILRSNKFYNLLPK-ELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQ 292 (453)
Q Consensus 215 -~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~ 292 (453)
+.+.. .+...+..+++|+.+++.++.+....+. .+..+..+..+...++.+....+..+..
T Consensus 88 ~n~l~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~---------------- 150 (242)
T d1xwdc1 88 ANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG---------------- 150 (242)
T ss_dssp CTTCCE-ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT----------------
T ss_pred cccccc-cccccccccccccccccchhhhccccccccccccccccccccccccccccccccccc----------------
Confidence 23322 2333334567777777777766443221 2233444444444554444111111111
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEE-EcCCccCCCCCCcc
Q 048417 293 YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSV-NLSNNFFTGRIPES 371 (453)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~ 371 (453)
....++.+++++|+++...+.. ...++++++ .+++|.+++..+..
T Consensus 151 ---------------------------------~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~ 196 (242)
T d1xwdc1 151 ---------------------------------LSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDV 196 (242)
T ss_dssp ---------------------------------SBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTT
T ss_pred ---------------------------------ccccceeeeccccccccccccc-ccchhhhccccccccccccccHHH
Confidence 1234678888888887444433 345556555 45777787433456
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
|.++++|++|++++|++....+..|.+++.|+++++.+
T Consensus 197 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 88899999999999999855556677777777766643
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=4.2e-15 Score=126.22 Aligned_cols=165 Identities=22% Similarity=0.195 Sum_probs=97.9
Q ss_pred CCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccc-cccccCcEEEC
Q 048417 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALP-LISSYLIELDF 113 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l 113 (453)
++.+|++|+++++.+++. +. + ..+++|++|++++|++++.. .+..+++|++|++++|+++.... ..+++|+.|++
T Consensus 44 ~L~~L~~L~l~~~~i~~l-~~-l-~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l 119 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSV-QG-I-QYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (210)
T ss_dssp HHHTCCEEECTTSCCCCC-TT-G-GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred HhcCccEEECcCCCCCCc-hh-H-hhCCCCCEEeCCCccccCcc-ccccCcccccccccccccccccccccccccccccc
Confidence 344555555555555332 21 2 44555555555555555432 34455555666665555544321 22455666666
Q ss_pred cCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCc
Q 048417 114 SNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193 (453)
Q Consensus 114 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 193 (453)
+++.+... ..+..++.++.++++++.+++ +..+..+++|+++++++|.+.+. + .+..+++|+.|++++|.
T Consensus 120 ~~~~~~~~------~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~ 189 (210)
T d1h6ta2 120 EHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNH 189 (210)
T ss_dssp TTSCCCCC------GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred cccccccc------ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCC
Confidence 65554421 123357778888888777763 23466677888888888877743 2 36777888888888887
Q ss_pred cccccccccccCCCCEEeCCC
Q 048417 194 LCGTIHSLENCTALMTLDVGE 214 (453)
Q Consensus 194 ~~~~~~~~~~~~~L~~L~l~~ 214 (453)
++.+ +.+..+++|+.|++++
T Consensus 190 i~~l-~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 190 ISDL-RALAGLKNLDVLELFS 209 (210)
T ss_dssp CCBC-GGGTTCTTCSEEEEEE
T ss_pred CCCC-hhhcCCCCCCEEEccC
Confidence 7654 3577778888887753
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=2e-15 Score=128.21 Aligned_cols=166 Identities=19% Similarity=0.314 Sum_probs=112.4
Q ss_pred ccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccce
Q 048417 203 NCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 282 (453)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 282 (453)
.+.+++.|+++++.+..... .+.+++|++|++++|.+.+.. .+..+++|++|++++|.++ .++ .+..
T Consensus 44 ~L~~L~~L~l~~~~i~~l~~---l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~------ 110 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKD------ 110 (210)
T ss_dssp HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTT------
T ss_pred HhcCccEEECcCCCCCCchh---HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-cccc------
Confidence 45678888888887755322 246788888888888776643 3567788888888888776 333 2333
Q ss_pred eccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCc
Q 048417 283 MNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN 362 (453)
Q Consensus 283 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 362 (453)
+++|+.|++.++.+.. ...+..++.++.+++++|
T Consensus 111 --------------------------------------------l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n 144 (210)
T d1h6ta2 111 --------------------------------------------LKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNN 144 (210)
T ss_dssp --------------------------------------------CTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSS
T ss_pred --------------------------------------------cccccccccccccccc--cccccccccccccccccc
Confidence 4556777777776642 234666777788888777
Q ss_pred cCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCC
Q 048417 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432 (453)
Q Consensus 363 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~ 432 (453)
.+.+. ..+..+++|+++++++|++.+ ++ .+..+++|++|++++|+++ .++.+..+++|+.+++++
T Consensus 145 ~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 145 KITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 209 (210)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred ccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence 77632 345667778888888887763 32 3677778888888888777 356667777777777754
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=3.5e-15 Score=125.63 Aligned_cols=178 Identities=20% Similarity=0.325 Sum_probs=112.1
Q ss_pred EEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCc
Q 048417 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNN 265 (453)
Q Consensus 186 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (453)
...+..+.+++.. ....+.++++|+++++.+.. +.. .+.+++|++|++++|.+.+.. .+..+++|++|++++|.
T Consensus 22 ~~~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~-l~~--l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~ 95 (199)
T d2omxa2 22 KTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ 95 (199)
T ss_dssp HHHTTCSSTTSEE-CHHHHTTCCEEECTTSCCCC-CTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred HHHhCCCCCCCcc-CHHHhcCCCEEECCCCCCCC-ccc--cccCCCcCcCccccccccCcc--cccCCcccccccccccc
Confidence 3344444444322 22345677777777776644 221 235667777777777665532 26666677777777666
Q ss_pred CCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCC
Q 048417 266 LSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP 345 (453)
Q Consensus 266 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 345 (453)
+. .++. + ..++.|+.++++++.... .
T Consensus 96 ~~-~~~~-l--------------------------------------------------~~l~~L~~L~l~~~~~~~--~ 121 (199)
T d2omxa2 96 IA-DITP-L--------------------------------------------------ANLTNLTGLTLFNNQITD--I 121 (199)
T ss_dssp CC-CCGG-G--------------------------------------------------TTCTTCSEEECCSSCCCC--C
T ss_pred cc-cccc-c--------------------------------------------------cccccccccccccccccc--c
Confidence 54 2221 2 235567778887777653 2
Q ss_pred ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccee
Q 048417 346 LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSF 425 (453)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L 425 (453)
..+..+++|+.|++++|.+. .+ +.+..+++|+.|++.+|++++. +.+.++++|++|++++|++++ ++.+..+++|
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~~l~~L~~L 196 (199)
T d2omxa2 122 DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-ISVLAKLTNL 196 (199)
T ss_dssp GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTC
T ss_pred cccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC-CccccCCCCC
Confidence 34667788888888888776 33 3577788888888888887743 347788888888888888774 5556666666
Q ss_pred ecc
Q 048417 426 DAS 428 (453)
Q Consensus 426 ~~l 428 (453)
++|
T Consensus 197 ~~L 199 (199)
T d2omxa2 197 ESL 199 (199)
T ss_dssp SEE
T ss_pred CcC
Confidence 653
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=9.1e-16 Score=136.82 Aligned_cols=208 Identities=18% Similarity=0.134 Sum_probs=103.6
Q ss_pred cCCcccEEEcccCccCCC-CCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCC-cccccCchHHHhccCcc
Q 048417 156 NYQNLMILDLSNNKFTGN-LPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGEN-ELVENIPTWIRERFSRI 232 (453)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L 232 (453)
...+|++|+++++.+... ....+..+++|++|+++++.+.... ..+..+++|++|++++| .+++.....+...+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 345666666666655422 1223455666666666666554322 44455566666666664 23322222333445556
Q ss_pred eEEEecCCc-cccc-Cchhh-cCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhh
Q 048417 233 VVLILRSNK-FYNL-LPKEL-CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309 (453)
Q Consensus 233 ~~L~l~~~~-~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 309 (453)
++|++++|. +++. ....+ ..++.|+.|+++++... +....
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------i~~~~-------------- 166 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-----------------------LQKSD-------------- 166 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-----------------------SCHHH--------------
T ss_pred cccccccccccccccchhhhcccccccchhhhcccccc-----------------------ccccc--------------
Confidence 666665543 2111 11111 12345555555543210 00000
Q ss_pred hhHHHHhcCCcchhhhhcCcccEEecCCC-cCCCcCCccccCCCCCcEEEcCCc-cCCCCCCccccCCCCCCEEEcCCCc
Q 048417 310 EDAFVVMKGREAKYERTLNLVRIIDFSKN-NFSGKIPLEVTNLKVLQSVNLSNN-FFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
.......+++|++|++++| .+++.....+..+++|++|++++| .+++.....++.+++|+.|+++++
T Consensus 167 ----------l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~- 235 (284)
T d2astb2 167 ----------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 235 (284)
T ss_dssp ----------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred ----------ccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-
Confidence 0011133566777777765 355555556667777777777775 354444455667777777777776
Q ss_pred CCCC-CCccccCCCCCCEEEccCCcccc
Q 048417 388 LSGE-IPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 388 l~~~-~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
+.+. ++.....+|+|+ +..+++++
T Consensus 236 ~~d~~l~~l~~~lp~L~---i~~~~ls~ 260 (284)
T d2astb2 236 VPDGTLQLLKEALPHLQ---INCSHFTT 260 (284)
T ss_dssp SCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred CCHHHHHHHHHhCcccc---ccCccCCC
Confidence 3322 222223455554 34455553
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=1.4e-14 Score=121.94 Aligned_cols=162 Identities=22% Similarity=0.243 Sum_probs=104.7
Q ss_pred cCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCcccccc-ccccccCcEEE
Q 048417 34 YSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIAL-PLISSYLIELD 112 (453)
Q Consensus 34 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~ 112 (453)
.+++++++|+++++.+++ ++. + +.+++|++|++++|+++... ++.++++|++|++++|.+.... ...++.|++|+
T Consensus 37 ~~l~~l~~L~l~~~~i~~-l~~-l-~~l~nL~~L~Ls~N~l~~~~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~ 112 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKS-IDG-V-EYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 112 (199)
T ss_dssp HHHTTCCEEECTTSCCCC-CTT-G-GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred HHhcCCCEEECCCCCCCC-ccc-c-ccCCCcCcCccccccccCcc-cccCCccccccccccccccccccccccccccccc
Confidence 345666666666666633 321 2 55666666666666666543 3566666666666666655433 22355666777
Q ss_pred CcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCC
Q 048417 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192 (453)
Q Consensus 113 l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 192 (453)
++++...... .+..+++|+.+++++|++. ..+ .+..+++|+.|++.+|.+++. ..+.++++|+.|++++|
T Consensus 113 l~~~~~~~~~------~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N 182 (199)
T d2omxa2 113 LFNNQITDID------PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSN 182 (199)
T ss_dssp CCSSCCCCCG------GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred cccccccccc------ccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC--ccccCCCCCCEEECCCC
Confidence 7666654321 1335788888888888876 333 477788888888888888743 24778888888888888
Q ss_pred ccccccccccccCCCCEE
Q 048417 193 NLCGTIHSLENCTALMTL 210 (453)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L 210 (453)
+++++ +.++.+++|+.|
T Consensus 183 ~i~~i-~~l~~L~~L~~L 199 (199)
T d2omxa2 183 KVSDI-SVLAKLTNLESL 199 (199)
T ss_dssp CCCCC-GGGGGCTTCSEE
T ss_pred CCCCC-ccccCCCCCCcC
Confidence 87764 356677777765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.7e-16 Score=137.71 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=65.7
Q ss_pred cCcccEEecCCCc--CCCc-CCccccCCCCCcEEEcCCcc-CCCCCCccccCCCCCCEEEcCCC-cCCCCCCccccCCCC
Q 048417 327 LNLVRIIDFSKNN--FSGK-IPLEVTNLKVLQSVNLSNNF-FTGRIPESVGTMRSLESIDFSLN-QLSGEIPQSMSSLKF 401 (453)
Q Consensus 327 ~~~L~~L~l~~~~--l~~~-~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 401 (453)
+++|+.|+++++. +++. +......+++|++|++++|. +++.....+..+++|++|++++| .+++.....+.++|+
T Consensus 147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~ 226 (284)
T d2astb2 147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226 (284)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence 4679999999763 4322 22334568999999999975 66566677889999999999996 566666667888999
Q ss_pred CCEEEccCC
Q 048417 402 LNHLNLSNN 410 (453)
Q Consensus 402 L~~L~l~~n 410 (453)
|++|++++|
T Consensus 227 L~~L~l~~~ 235 (284)
T d2astb2 227 LKTLQVFGI 235 (284)
T ss_dssp CCEEECTTS
T ss_pred CCEEeeeCC
Confidence 999999988
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.56 E-value=5.9e-15 Score=123.43 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=70.9
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
.+++|+.|++++|.+....+..+..+++|+.|++++|++....+.+|.++++|++|+|++|++....+..|..+++|++|
T Consensus 52 ~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l 131 (192)
T d1w8aa_ 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence 35567888888888876777777788888888888888886666778888888888888888886677778888888888
Q ss_pred EccCCccccc
Q 048417 406 NLSNNNLTGK 415 (453)
Q Consensus 406 ~l~~n~l~~~ 415 (453)
++++|.+...
T Consensus 132 ~L~~N~~~~~ 141 (192)
T d1w8aa_ 132 NLASNPFNCN 141 (192)
T ss_dssp ECTTCCBCCS
T ss_pred cccccccccc
Confidence 8888887643
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.53 E-value=6.4e-15 Score=123.20 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=67.4
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
+++|++|++++|+++...+.+|..+++|++|+|++|+++...+.+|..+++|++|++++|.+...... ..-...++.+.
T Consensus 77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~ 155 (192)
T d1w8aa_ 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKS 155 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHC
T ss_pred ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhc
Confidence 34456677777777766666777788888888888888755667777888888888888877633211 11112345556
Q ss_pred ccCCcccccCCCCcccceeecccCCCCC
Q 048417 407 LSNNNLTGKIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 407 l~~n~l~~~~~~~~~l~~L~~l~l~~n~ 434 (453)
+..+.++...|. .+..++..+++.|.
T Consensus 156 l~~~~~~c~~p~--~l~~~~l~~L~~n~ 181 (192)
T d1w8aa_ 156 LNGGAARCGAPS--KVRDVQIKDLPHSE 181 (192)
T ss_dssp CSGGGCBBCSST--TTTTSBGGGSCTTT
T ss_pred ccCCCeEeCCCh--hhcCCEeeecCHhh
Confidence 666666654443 34556667777765
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.50 E-value=3.1e-15 Score=137.54 Aligned_cols=237 Identities=16% Similarity=0.113 Sum_probs=129.9
Q ss_pred ccccCCCcccEEEcCCCcccccchhhH---hhcCCCeEEEEccCCcccCC-----------CcCccCCCCCcEEEccCCc
Q 048417 31 SWLYSQKHLNYLDLSYSGIIGTIPNIF---WSSASQIYVLDLSFNQIHGQ-----------IPNLTNAAQLEVLSLGSNS 96 (453)
Q Consensus 31 ~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~ls~~~~~~~-----------~~~l~~~~~L~~L~l~~~~ 96 (453)
.++.+...+++|+|++|++.......+ +...++|+.++++++..... ...+..+++|+.|++++|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 334455556666666555533222222 13345555666555433211 1123344556666666665
Q ss_pred ccccccc-------ccccCcEEECcCCCCCCchhhhhhhhh---------cccCcccEEeccCCCCCCC----Cchhhhc
Q 048417 97 FSIALPL-------ISSYLIELDFSNNSISGSIFHFICYRA---------NELNKWQILYLSGNFLQGE----LPDCWMN 156 (453)
Q Consensus 97 ~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~---------~~~~~L~~L~l~~~~~~~~----~~~~l~~ 156 (453)
+...... ..++|+.|++++|.+.......++..+ ...+.|+.++++++.++.. +...+..
T Consensus 105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~ 184 (344)
T d2ca6a1 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184 (344)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence 5442211 134566666666655433222222211 2355677777777666522 1223445
Q ss_pred CCcccEEEcccCccCCC-----CCccccccccccEEEccCCccccc-----cccccccCCCCEEeCCCCcccccCchHHH
Q 048417 157 YQNLMILDLSNNKFTGN-----LPISLGSLISLQSLHLRKNNLCGT-----IHSLENCTALMTLDVGENELVENIPTWIR 226 (453)
Q Consensus 157 l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 226 (453)
...|+++++++|.+... ....+...++|+.|++++|.+... ...+..+++|++|++++|.+.+.....++
T Consensus 185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~ 264 (344)
T d2ca6a1 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264 (344)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence 56777777777766521 123345667778888887776432 24556777888888888877654333333
Q ss_pred h-----ccCcceEEEecCCcccccC----chhhc-CCCCccEEEccCCcCC
Q 048417 227 E-----RFSRIVVLILRSNKFYNLL----PKELC-DLAFLQIVDLADNNLS 267 (453)
Q Consensus 227 ~-----~~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~~~~~ 267 (453)
. ..+.|++|++++|.+.... ...+. .++.|+.|++++|.+.
T Consensus 265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 2 1256888888888775432 22332 4678999999999886
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=5.8e-14 Score=107.70 Aligned_cols=105 Identities=22% Similarity=0.387 Sum_probs=87.9
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 410 (453)
+.|++++|+++ ..+ .+..+++|++|++++|.++ .+|+.++.+++|+.|++++|.+.+ ++ .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 57899999998 444 4788999999999999998 778889999999999999999984 44 5889999999999999
Q ss_pred cccccC--CCCcccceeecccCCCCCccCCCC
Q 048417 411 NLTGKI--PSSTQLQSFDASSFSGNDLCRAPL 440 (453)
Q Consensus 411 ~l~~~~--~~~~~l~~L~~l~l~~n~l~~~~~ 440 (453)
++++.. ..+..+++|+.+++++|++++.+.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~ 107 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence 998532 234778899999999999887653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.48 E-value=3.4e-14 Score=130.49 Aligned_cols=236 Identities=21% Similarity=0.203 Sum_probs=128.8
Q ss_pred CcCCCcccEEEccCCcCCCC----CCccccCCCcccEEEcCCCcccc---cchhhH------hhcCCCeEEEEccCCccc
Q 048417 9 WIPPFQLATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSGIIG---TIPNIF------WSSASQIYVLDLSFNQIH 75 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~------~~~l~~L~~L~ls~~~~~ 75 (453)
+.+...|+.|+|++|.++.. +..++...++|+.++++++.... ..+..+ +..+++|++|++++|.++
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 106 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence 44456677777777766443 22335556677777776554311 111111 134566777777777665
Q ss_pred CC-----CcCccCCCCCcEEEccCCccccccc----------------cccccCcEEECcCCCCCCchhhhhhhhhcccC
Q 048417 76 GQ-----IPNLTNAAQLEVLSLGSNSFSIALP----------------LISSYLIELDFSNNSISGSIFHFICYRANELN 134 (453)
Q Consensus 76 ~~-----~~~l~~~~~L~~L~l~~~~~~~~~~----------------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 134 (453)
.. ...+...++|++|++++|.+..... ...+.|+.++++++.+.......++..+...+
T Consensus 107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~ 186 (344)
T d2ca6a1 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186 (344)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence 31 1223345567777777766532110 11235667777777666665566666666667
Q ss_pred cccEEeccCCCCCCC-----CchhhhcCCcccEEEcccCccCCC----CCccccccccccEEEccCCcccccc-----cc
Q 048417 135 KWQILYLSGNFLQGE-----LPDCWMNYQNLMILDLSNNKFTGN----LPISLGSLISLQSLHLRKNNLCGTI-----HS 200 (453)
Q Consensus 135 ~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-----~~ 200 (453)
.|++|++++|.+... +...+...++|++|++++|.+... +...+..+++|+.|++++|.+.... ..
T Consensus 187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 266 (344)
T d2ca6a1 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 266 (344)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence 777777777766521 112344566677777777665421 1233455666777777777665321 22
Q ss_pred ccc--cCCCCEEeCCCCcccccCchHHH----hccCcceEEEecCCcccc
Q 048417 201 LEN--CTALMTLDVGENELVENIPTWIR----ERFSRIVVLILRSNKFYN 244 (453)
Q Consensus 201 ~~~--~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~ 244 (453)
+.. ...+++|++++|.+.......+. ...+.|+.|++++|.+..
T Consensus 267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 222 24577777777766443222222 234567777777776643
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.2e-14 Score=112.72 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=95.3
Q ss_pred hhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 048417 325 RTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNH 404 (453)
Q Consensus 325 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 404 (453)
..+.++++|++++|+++ .++..+..+++|+.|++++|.+. .+ +.+..+++|++|++++|++.+..+..+..+++|++
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence 35667999999999998 45666677899999999999998 44 45889999999999999999655556678999999
Q ss_pred EEccCCccccc--CCCCcccceeecccCCCCCccCCCC
Q 048417 405 LNLSNNNLTGK--IPSSTQLQSFDASSFSGNDLCRAPL 440 (453)
Q Consensus 405 L~l~~n~l~~~--~~~~~~l~~L~~l~l~~n~l~~~~~ 440 (453)
|++++|+++.. +..+..+++|+.+++++|+++..|.
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~ 129 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred ceeccccccccccccccccccccchhhcCCCccccccc
Confidence 99999999843 3345788999999999999988774
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.6e-13 Score=106.60 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=60.9
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccccc-ccccCCCCEE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS-LENCTALMTL 210 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L 210 (453)
+..++++|++++|+++ .++..+..++.|++|++++|.+... +.+..+++|+.|++++|.++.+... +..+++|++|
T Consensus 16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence 4556667777777766 3444445566677777777766632 2356666666666666666655432 3445666666
Q ss_pred eCCCCcccccCchHHHhccCcceEEEecCCccc
Q 048417 211 DVGENELVENIPTWIRERFSRIVVLILRSNKFY 243 (453)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 243 (453)
++++|.+...........+++|+++++.+|++.
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred eeccccccccccccccccccccchhhcCCCccc
Confidence 666665543211112234455555555555543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=3.2e-12 Score=97.79 Aligned_cols=101 Identities=26% Similarity=0.322 Sum_probs=58.5
Q ss_pred cEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEE
Q 048417 109 IELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 188 (453)
Q Consensus 109 ~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 188 (453)
|.|++++|.++... .+..+++|++|++++|+++ .+|..+..+++|++|++++|.++. .+ .+..+++|+.|+
T Consensus 1 R~L~Ls~n~l~~l~------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~ 71 (124)
T d1dcea3 1 RVLHLAHKDLTVLC------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 71 (124)
T ss_dssp SEEECTTSCCSSCC------CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred CEEEcCCCCCCCCc------ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEE
Confidence 45666666665321 1234666666666666665 445556666666666666666663 22 355666666666
Q ss_pred ccCCcccccc--ccccccCCCCEEeCCCCccc
Q 048417 189 LRKNNLCGTI--HSLENCTALMTLDVGENELV 218 (453)
Q Consensus 189 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 218 (453)
+++|++..+. ..+..+++|+.+++++|.+.
T Consensus 72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 6666665443 34555566666666666553
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.6e-12 Score=103.98 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=80.5
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCcc-CCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNF-FTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
..+.++.+++++. ..|..+..+++|++|++++++ ++...+..|.++++|+.|++++|++....+..|..+++|++|+|
T Consensus 9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 3456777777776 456667778888888887664 66444467888888888888888888666777888888888888
Q ss_pred cCCcccccCCCCcccceeecccCCCCCccCCCCCCCC
Q 048417 408 SNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNC 444 (453)
Q Consensus 408 ~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~c 444 (453)
++|+++...++.-...+|+.+++++| |++|.|
T Consensus 88 s~N~l~~l~~~~~~~~~l~~L~L~~N-----p~~C~C 119 (156)
T d2ifga3 88 SFNALESLSWKTVQGLSLQELVLSGN-----PLHCSC 119 (156)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSS-----CCCCCG
T ss_pred cCCCCcccChhhhccccccccccCCC-----cccCCc
Confidence 88888865555544556888888888 445555
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.5e-10 Score=89.36 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=71.6
Q ss_pred cCcccEEecCCC-cCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 327 LNLVRIIDFSKN-NFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
+++|++|++.++ .++.+.+.+|..+++|+.|++++|+++...+.+|..+++|++|+|++|+++...+..+.. .+|+.|
T Consensus 30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L 108 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL 108 (156)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence 456788999766 477666778999999999999999999666788999999999999999999444445544 479999
Q ss_pred EccCCccc
Q 048417 406 NLSNNNLT 413 (453)
Q Consensus 406 ~l~~n~l~ 413 (453)
++++|++.
T Consensus 109 ~L~~Np~~ 116 (156)
T d2ifga3 109 VLSGNPLH 116 (156)
T ss_dssp ECCSSCCC
T ss_pred ccCCCccc
Confidence 99999986
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.08 E-value=3.1e-12 Score=106.74 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=37.6
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+. .++..+..+++|+.|++++|.++.+ +.+..+++|+.|+
T Consensus 46 ~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~ 121 (198)
T d1m9la_ 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHSSEEE
T ss_pred cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccccccccc
Confidence 35555555555555542 22 2445555555555555554 2232223334455555555544432 2233444444455
Q ss_pred CCCCcc
Q 048417 212 VGENEL 217 (453)
Q Consensus 212 l~~~~~ 217 (453)
+++|.+
T Consensus 122 L~~N~i 127 (198)
T d1m9la_ 122 MSNNKI 127 (198)
T ss_dssp ESEEEC
T ss_pred cccchh
Confidence 444444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.05 E-value=9.7e-12 Score=103.64 Aligned_cols=145 Identities=20% Similarity=0.225 Sum_probs=111.4
Q ss_pred CcccEEeccCC--CCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 134 NKWQILYLSGN--FLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
...+.+++.+. .++ .++..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++.+......+++|+.|+
T Consensus 23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~ 99 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEE
T ss_pred cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccccccccccccccccc
Confidence 34555666543 233 566789999999999999999984 43 58889999999999999987765556667899999
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCc-hhhcCCCCccEEEccCCcCCCCccc----------cccccccc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADNNLSGEVPR----------CIHNLRAM 280 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L 280 (453)
+++|.+.. ++. +..+++|+.|++++|.+..... ..+..+++|++|++++|++....+. .+..+++|
T Consensus 100 l~~N~i~~-l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L 176 (198)
T d1m9la_ 100 ISYNQIAS-LSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp CSEEECCC-HHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred cccccccc-ccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence 99999865 322 3468899999999999876432 4688899999999999987533222 25678888
Q ss_pred ceec
Q 048417 281 VTMN 284 (453)
Q Consensus 281 ~~l~ 284 (453)
+.||
T Consensus 177 ~~LD 180 (198)
T d1m9la_ 177 KKLD 180 (198)
T ss_dssp CEES
T ss_pred CEeC
Confidence 8886
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=4.4e-07 Score=72.10 Aligned_cols=82 Identities=18% Similarity=0.083 Sum_probs=56.7
Q ss_pred hhcCcccEEecCCCcCCCcC--CccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc-------c
Q 048417 325 RTLNLVRIIDFSKNNFSGKI--PLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ-------S 395 (453)
Q Consensus 325 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------~ 395 (453)
..++.|++|++++|+++... +..+..+++|+.|++++|.+.+..+-.......|+.|++++|++.....+ .
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 35778899999999887543 23456688888888888888743222333445688888888888755442 3
Q ss_pred ccCCCCCCEEE
Q 048417 396 MSSLKFLNHLN 406 (453)
Q Consensus 396 l~~l~~L~~L~ 406 (453)
+..+|+|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 55688888775
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.01 E-value=3.7e-06 Score=66.95 Aligned_cols=42 Identities=7% Similarity=-0.041 Sum_probs=27.2
Q ss_pred ccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC
Q 048417 106 SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 106 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 147 (453)
+.|++|++++|.++..+...++..+...+.|++|+++++.+.
T Consensus 72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence 356666666666666666666666666677777777766544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=1.1e-06 Score=69.70 Aligned_cols=104 Identities=21% Similarity=0.149 Sum_probs=53.0
Q ss_pred cccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc---ccccccCCCCEEe
Q 048417 135 KWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI---HSLENCTALMTLD 211 (453)
Q Consensus 135 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~ 211 (453)
..+.|++++.+.. + .+..+..+..++...+... ..+..+..++.|++|++++|+++.+. ..+..+++|+.|+
T Consensus 23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCC---c-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence 4555666654432 1 1233333333333333222 22223345677777777777776543 3345567777777
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYN 244 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 244 (453)
+++|.+.+...... -....|+++++.+|++..
T Consensus 98 Ls~N~i~~l~~l~~-l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 98 LSGNELKSERELDK-IKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp CTTSCCCCGGGHHH-HTTCCCSSCCCTTSTTSS
T ss_pred cccCccccchhhhh-hhccccceeecCCCCcCc
Confidence 77777654222222 233456666666666543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.82 E-value=8.5e-06 Score=64.75 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=33.5
Q ss_pred ccCcEEECcCC-CCCCchhhhhhhhhcccCcccEEeccCCCCCC----CCchhhhcCCcccEEEcccCccC
Q 048417 106 SYLIELDFSNN-SISGSIFHFICYRANELNKWQILYLSGNFLQG----ELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 106 ~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
++|++|+++++ .++......+...+...+.|++|++++|.+.. .+...+...+.|++|++++|.+.
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 34555555542 34444444555555555666666666665542 12223334455555555555554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.47 E-value=3.4e-05 Score=61.08 Aligned_cols=25 Identities=4% Similarity=-0.107 Sum_probs=10.5
Q ss_pred CCCchhhhhhhhhcccCcccEEecc
Q 048417 118 ISGSIFHFICYRANELNKWQILYLS 142 (453)
Q Consensus 118 l~~~~~~~~~~~~~~~~~L~~L~l~ 142 (453)
+.......++..+...+.|++|++.
T Consensus 116 i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 116 LGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 3333333444444444444444443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.47 E-value=3.5e-05 Score=60.99 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=58.2
Q ss_pred hcCCCeEEEEccC-CcccC-----CCcCccCCCCCcEEEccCCcccccccc-------ccccCcEEECcCCCCCCchhhh
Q 048417 59 SSASQIYVLDLSF-NQIHG-----QIPNLTNAAQLEVLSLGSNSFSIALPL-------ISSYLIELDFSNNSISGSIFHF 125 (453)
Q Consensus 59 ~~l~~L~~L~ls~-~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~ 125 (453)
.+.+.|++|++++ +.++. ....+...++|+.|++++|.+...... ..+.++.+++.++.+.......
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 3445555555554 23331 122234455566666666655432111 1245666677777776666666
Q ss_pred hhhhhcccCcccEEecc--CCCCCC----CCchhhhcCCcccEEEcccC
Q 048417 126 ICYRANELNKWQILYLS--GNFLQG----ELPDCWMNYQNLMILDLSNN 168 (453)
Q Consensus 126 ~~~~~~~~~~L~~L~l~--~~~~~~----~~~~~l~~l~~L~~L~l~~~ 168 (453)
+...+...+.|+.+++. ++.+.. .+...+...+.|++|++..+
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 66777677777765554 444432 12233445566666666544
|