Citrus Sinensis ID: 048429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Coil and Loop (DISEMBL)
MDATIDQDEFEALKQKIKNmlisptdksfqkLSLIDAVQrlgydgndvHTVALRFRLLRQQgyriscdifggfkddrgKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNrpirrglprLEAIYYIdlysqddsKDKAILLKFAKLDFSMLQVIHRKELSIIT
Flexible Loop (DISEMBL)
MDATIDQDEFEALKQKIKNMlisptdksfqKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIfggfkddrgKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT
Low Complexity Region (SEG)
MDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT
Disordered region (IsUnstruct)
*******************MLIS**DKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKEL****
Disordered Region (DISOPRED)
*****DQ*EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT
Disordered Region (DISEMBL)
MDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT
Disordered Region (DISPRO)
MDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q6Q3H3	557	(-)-germacrene D synthase	yes	no	0.942	0.324	0.534	4e-55
Q94JS8	560	(E)-beta-farnesene syntha	N/A	no	0.979	0.335	0.513	2e-53
O49853	554	(+)-delta-cadinene syntha	N/A	no	0.942	0.326	0.477	1e-50
Q39761	554	(+)-delta-cadinene syntha	N/A	no	0.942	0.326	0.472	5e-50
Q39760	554	(+)-delta-cadinene syntha	N/A	no	0.942	0.326	0.463	9e-50
Q6Q3H2	556	Valencene synthase OS=Vit	no	no	0.947	0.327	0.485	5e-48
P93665	554	(+)-delta-cadinene syntha	N/A	no	0.989	0.342	0.441	9e-48
Q43714	555	(+)-delta-cadinene syntha	N/A	no	0.953	0.329	0.473	3e-47
F6M8H7	562	Probable sesquiterpene sy	N/A	no	0.989	0.338	0.431	4e-46
E3W207	559	Sesquiterpene synthase OS	N/A	no	0.927	0.318	0.446	4e-45

>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1

 Score =  214 bits (544), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 145/204 (71%), Gaps = 23/204 (11%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------YDGN------DV 48
           + LK++++ ML++  D S QKL LIDA+QRLG                +DG+      DV
Sbjct: 55  QQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSAEEDV 114

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
           +T +LRFRLLRQQGY +SCD+F  FKD+ G FK SL +D+ GMLSLYEA H R+ GEDIL
Sbjct: 115 YTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDIL 174

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAI 168
           DEA+AFTT+HL+S     S  L+++++HAL +PIR+GLPRLEA +Y  +Y  DDS +KA 
Sbjct: 175 DEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKA- 233

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LLK AKLDF++LQ +H+KELS I+
Sbjct: 234 LLKLAKLDFNLLQKLHQKELSDIS 257

Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5

>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1

 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/216 (51%), Positives = 150/216 (69%), Gaps = 28/216 (12%)

Query: 4   TID---QDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY----------------- 43
           TID   Q++  ALKQ+++ M+ +  +K  QKL +IDAVQRLG                  
Sbjct: 44  TIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSH 103

Query: 44  --DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLR 101
             D +D++ V+LRFRL RQQG +ISCD+F  FKDD GKFK SLIND+ GMLSLYEAA+L 
Sbjct: 104 DLDSDDLYVVSLRFRLFRQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLA 163

Query: 102 IRGEDILDEAVAFTTSHLESMV-----TQVSPQLSDEILHALNRPIRRGLPRLEAIYYID 156
           IRGEDILDEA+ FTT+HL+S++     +  +  L+++I H+L  P+R+   RLEA Y++D
Sbjct: 164 IRGEDILDEAIVFTTTHLKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLD 223

Query: 157 LYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
           +YS+DD  D+  LLKFAKLDF++LQ  H+KE SI+T
Sbjct: 224 IYSRDDLHDET-LLKFAKLDFNILQAAHQKEASIMT 258

Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.

Citrus junos (taxid: 135197)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

EC: 7

>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 141/203 (69%), Gaps = 22/203 (10%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD---------------------GNDVH 49
           + LK++++ M+++P   S QKL+ ID+VQRLG                        ND++
Sbjct: 53  QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112

Query: 50  TVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILD 109
           T +LRFRLLR+ GY +SCD+F  FKD++G FK S+ +D+ G+L LY+A++LR+ GEDILD
Sbjct: 113 TTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVHGEDILD 172

Query: 110 EAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 169
           EA++FTT+HL   V+ +   LS+E+ HAL + IRRGLPR+EA +Y+ +Y   +S +KA L
Sbjct: 173 EAISFTTNHLSLAVSSLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231

Query: 170 LKFAKLDFSMLQVIHRKELSIIT 192
           L+FAK+DF+MLQ +HRKELS I 
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEIC 254

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1

 Score =  197 bits (500), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 139/203 (68%), Gaps = 22/203 (10%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD---------------------GNDVH 49
           + LK++++ M+++P   S QKL+ ID+VQRLG                        ND++
Sbjct: 53  QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112

Query: 50  TVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILD 109
           T ++RFRLLR+ GY +SCD+F  FKD++G FK S+ +D+ G+L LY+A++LR+ GEDILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172

Query: 110 EAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 169
           EA++FTT HL   V  +   LS+E+ HAL + IRRGLPR+EA +Y+ +Y   +S +KA L
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231

Query: 170 LKFAKLDFSMLQVIHRKELSIIT 192
           L+FAK+DF+MLQ +HRKELS I 
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEIC 254

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1

 Score =  196 bits (498), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 142/203 (69%), Gaps = 22/203 (10%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD---------------------GNDVH 49
           + LK++++ M+++P   S QKL+ ID+VQRLG                        ND++
Sbjct: 53  QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112

Query: 50  TVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILD 109
           T +LRFRLLR+ G+ +SCD+F  FKD++G FK S+ +D+ G+L LY+A++LR+ GEDILD
Sbjct: 113 TTSLRFRLLREHGFNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172

Query: 110 EAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 169
           EA++FTT+HL   V  +   LS+E+ HAL + IRRGLPR+EA +Y+ +Y   +S +K +L
Sbjct: 173 EAISFTTNHLSLAVASLDYPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNK-VL 231

Query: 170 LKFAKLDFSMLQVIHRKELSIIT 192
           L+FAK+DF+M+Q++HRKELS I+
Sbjct: 232 LEFAKIDFNMVQLLHRKELSEIS 254

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1

 Score =  190 bits (483), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/208 (48%), Positives = 141/208 (67%), Gaps = 26/208 (12%)

Query: 7   QDEFEALKQKIKNMLISPT-DKSFQKLSLIDAVQRLG--------------------YDG 45
           +++ E LK+++K  L +       Q L+ IDAVQRLG                    +D 
Sbjct: 48  EEQIEDLKKEVKRKLTAAAVANPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDC 107

Query: 46  NDV----HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLR 101
           ND+    + +AL FRLLRQQGY ISCDIF  F D+RG+FK +LI+D+ GML LYEAAHLR
Sbjct: 108 NDMDGDLYNIALGFRLLRQQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLR 167

Query: 102 IRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQD 161
           + GEDIL +A+AFTT+HL++MV  +   L++++ HALNRPIR+GL RLEA +YI +Y QD
Sbjct: 168 VHGEDILAKALAFTTTHLKAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVY-QD 226

Query: 162 DSKDKAILLKFAKLDFSMLQVIHRKELS 189
           ++     LL+ AKLDF+++Q +H++ELS
Sbjct: 227 EAFHDKTLLELAKLDFNLVQSLHKEELS 254

Involved in the biosynthesis of valencene, a major volatile emitted from flowers of grapevine. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (+)-valencene and (-)-7-epi-alpha-selinene along with five minor products.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 8

EC: 6

>sp|P93665|DCS1_GOSHI (+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1

 Score =  189 bits (480), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 144/215 (66%), Gaps = 25/215 (11%)

Query: 2   DATID---QDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD-------------- 44
           D  ID   Q   + LK++++ M+++P   S  KL+ ID+VQ LG                
Sbjct: 41  DKNIDAETQKRHQQLKEEVRKMIVAPMANSTLKLAFIDSVQGLGVSYHFTKEIEDELENI 100

Query: 45  -------GNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEA 97
                   ND++T +LRFRLLR+ G+ +SCD+F  FKD++G FK S+ +D+ G+L LY+A
Sbjct: 101 YHNNNDAENDLYTTSLRFRLLREHGFHVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQA 160

Query: 98  AHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDL 157
           ++LR+ GEDILDEA++FT++HL   V  +   LS+E+ HAL + IRRGLPR+EA +Y+ +
Sbjct: 161 SYLRVHGEDILDEAISFTSNHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSV 220

Query: 158 YSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
           Y   +S +K +LL+FAK+DF+M+Q++HRKELS I+
Sbjct: 221 YQDIESHNK-VLLEFAKIDFNMVQLLHRKELSEIS 254

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium hirsutum (taxid: 3635)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1

 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 138/207 (66%), Gaps = 24/207 (11%)

Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY-----------------DGN----- 46
           ++E LK +++ M++ P D S QKL  IDAVQRLG                  D N     
Sbjct: 50  QYEELKAQVRKMIMEPVDDSNQKLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNNNDAD 109

Query: 47  -DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGE 105
            D++T ALRFRLLR+ G+ ISCD F  FKD+ G FK SL +D+ G+L LYEA+++R+ GE
Sbjct: 110 TDLYTTALRFRLLREHGFDISCDAFNKFKDEAGNFKASLTSDVQGLLELYEASYMRVHGE 169

Query: 106 DILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKD 165
           DILDEA++FTT+ L   +  +   LS+++ HAL + IRRGLPR+EA  +I +Y   +S +
Sbjct: 170 DILDEAISFTTAQLTLALPTLHHPLSEQVGHALKQSIRRGLPRVEARNFISIYQDLESHN 229

Query: 166 KAILLKFAKLDFSMLQVIHRKELSIIT 192
           K+ LL+FAK+DF++LQ++HRKELS I 
Sbjct: 230 KS-LLQFAKIDFNLLQLLHRKELSEIC 255

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1

 Score =  184 bits (466), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 141/218 (64%), Gaps = 28/218 (12%)

Query: 2   DATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG------------------- 42
           D T  + + E LK++++  L +  DK  Q+L++IDA QRLG                   
Sbjct: 46  DQTQKERQVEELKEQVRRELAATVDKPLQQLNIIDATQRLGIAYLFENEIEESLKHIYLH 105

Query: 43  -------YDG-NDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSL 94
                  ++G +D+++VAL FRLLRQ GY++SCD+F  F+D+ G FK +L+ D  G+L L
Sbjct: 106 TYVENNCFEGSDDLYSVALWFRLLRQNGYKVSCDVFNKFRDNEGNFKNNLMEDAKGLLEL 165

Query: 95  YEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYY 154
           YEA H+ I GE++LD+A+ FT + LES+V+ ++  L++++ HAL +P+ RGLPRLEA+Y+
Sbjct: 166 YEATHVSIHGEEMLDDALEFTKTRLESVVSHLNYPLAEQVRHALYQPLHRGLPRLEAVYF 225

Query: 155 IDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
             +Y    S +KA LLK AKLDF++LQ  H+KELS I 
Sbjct: 226 FRIYEAHASHNKA-LLKLAKLDFNLLQSFHKKELSDIA 262

Sesquiterpene synthase.

Santalum murrayanum (taxid: 453085)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1

 Score =  180 bits (457), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 133/206 (64%), Gaps = 28/206 (13%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG--------------------------YD 44
           E LK++++  L +  DK  Q+L++IDA QRLG                          + 
Sbjct: 52  EELKEQVRRELAATVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVKNNCFQ 111

Query: 45  G-NDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIR 103
           G +D+++VAL FRLLRQ GY++SCD+F  F+D  G FK SL+ D  G+L LYEA HL + 
Sbjct: 112 GSHDLYSVALWFRLLRQDGYKVSCDVFDNFRDYEGNFKNSLMEDAKGLLELYEATHLSVH 171

Query: 104 GEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDS 163
           GE++LD+A+ F  + LES+V  ++  L++++ HAL RP+R+GLPRLEA+Y+  +Y    S
Sbjct: 172 GEEMLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYHS 231

Query: 164 KDKAILLKFAKLDFSMLQVIHRKELS 189
            +KA LLK AKLDF++LQ +HRKEL 
Sbjct: 232 HNKA-LLKLAKLDFNLLQSLHRKELG 256

Catalyzes alpha-humulene and delta-cadinene, as well as beta-elemene, the thermal rearrangement product of germacrene A and several other bicyclic sesquiterpenes when incubated with (2E,6E)-farnesyl diphosphate.

Santalum austrocaledonicum (taxid: 293154)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
255563621	558	(+)-delta-cadinene synthase isozyme A, p	0.989	0.340	0.530	1e-54
359493937	557	PREDICTED: (-)-germacrene D synthase [Vi	0.942	0.324	0.534	2e-53
9864189	555	terpene synthase [Citrus junos]	0.989	0.342	0.513	2e-53
75223414	557	RecName: Full=(-)-germacrene D synthase	0.942	0.324	0.534	2e-53
147856860	557	hypothetical protein VITISV_030783 [Viti	0.942	0.324	0.534	2e-53
147828675	557	hypothetical protein VITISV_013313 [Viti	0.942	0.324	0.534	3e-53
225461172	557	PREDICTED: (-)-germacrene D synthase [Vi	0.942	0.324	0.534	7e-53
302143187	725	unnamed protein product [Vitis vinifera]	0.942	0.249	0.534	7e-53
300079902	560	(E)-beta-farnesene synthase [Citrus reti	0.979	0.335	0.518	3e-52
433288601	553	germacrene-D synthase [Malus x domestica	0.994	0.345	0.5	3e-52

>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 151/213 (70%), Gaps = 23/213 (10%)

Query: 1   MDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY----------------- 43
           +D +I+Q +FE LKQK++ M+I   ++  +KL LIDAVQRLG                  
Sbjct: 47  IDGSIEQ-QFEGLKQKVRKMIIDLNNEPCKKLGLIDAVQRLGVGYHFKSEIEDVLQKVYH 105

Query: 44  ----DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAH 99
               D +D++TVALRFRLLRQ G ++SC IF  FKD  G FK SLIND  GMLSLYEA H
Sbjct: 106 DYSDDEDDLNTVALRFRLLRQHGIKVSCAIFEKFKDSEGNFKTSLINDALGMLSLYEATH 165

Query: 100 LRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYS 159
           L IRGED+LDEA+AFTT++L+S++ Q++  L+ +I  ALNRPIR+ LPRLEA  YID+Y+
Sbjct: 166 LSIRGEDVLDEALAFTTTNLQSVLPQLNTHLAAQISRALNRPIRKYLPRLEARNYIDIYA 225

Query: 160 QDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
            ++S +   LL FAKLDF+MLQ +H+KEL+++T
Sbjct: 226 TEESYN-TTLLNFAKLDFNMLQELHQKELNVVT 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 145/204 (71%), Gaps = 23/204 (11%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------YDGN------DV 48
           + LK++++ ML++  D S QKL LIDA+QRLG                +DG+      DV
Sbjct: 55  QQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSAEEDV 114

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
           +T +LRFRLLRQQGY +SCD+F  FKD+ G FK SL +D+ GMLSLYEA H R+ GEDIL
Sbjct: 115 YTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDIL 174

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAI 168
           DEA+AFTT+HL+S     S  L+++++HAL +PIR+GLPRLEA +Y  +Y  DDS +KA 
Sbjct: 175 DEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKA- 233

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LLK AKLDF++LQ +H+KELS I+
Sbjct: 234 LLKLAKLDFNLLQKLHQKELSDIS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/216 (51%), Positives = 151/216 (69%), Gaps = 26/216 (12%)

Query: 2   DATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGN--------------- 46
           D T  Q+E+EALKQ++++M+ +  D   QKL L+DAVQRLG   +               
Sbjct: 42  DDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDAMEKIYHD 101

Query: 47  --------DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAA 98
                   D++TV+LRFRLLRQQG+++ CD+F  FKDD GKFK SL+ D+ G+LSLYEA 
Sbjct: 102 DFDNNDDVDLYTVSLRFRLLRQQGFKVPCDVFAKFKDDEGKFKASLVRDVHGILSLYEAG 161

Query: 99  HLRIRGEDILDEAVAFTTSHLESMVTQ-VSP-QLSDEILHALNRPIRRGLPRLEAIYYID 156
           HL IRGE ILDEA+AFT +HL+SMV+Q V P  L+++I H L+ P+RR LPR+E  +++ 
Sbjct: 162 HLAIRGEGILDEAIAFTRTHLQSMVSQDVCPNNLAEQINHTLDCPLRRALPRVETRFFLS 221

Query: 157 LYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
           +Y +DD  DK  LLKF+KLDF+++Q IH+KELS IT
Sbjct: 222 VYPRDDKHDKT-LLKFSKLDFNLVQRIHQKELSAIT 256

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 145/204 (71%), Gaps = 23/204 (11%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------YDGN------DV 48
           + LK++++ ML++  D S QKL LIDA+QRLG                +DG+      DV
Sbjct: 55  QQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSAEEDV 114

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
           +T +LRFRLLRQQGY +SCD+F  FKD+ G FK SL +D+ GMLSLYEA H R+ GEDIL
Sbjct: 115 YTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDIL 174

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAI 168
           DEA+AFTT+HL+S     S  L+++++HAL +PIR+GLPRLEA +Y  +Y  DDS +KA 
Sbjct: 175 DEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKA- 233

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LLK AKLDF++LQ +H+KELS I+
Sbjct: 234 LLKLAKLDFNLLQKLHQKELSDIS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 145/204 (71%), Gaps = 23/204 (11%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------YDGN------DV 48
           + LK++++ ML++  D S QKL LIDA+QRLG                +DG+      DV
Sbjct: 55  QQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSAEEDV 114

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
           +T +LRFRLLRQQGY +SCD+F  FKD+ G FK SL +D+ GMLSLYEA H R+ GEDIL
Sbjct: 115 YTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDIL 174

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAI 168
           DEA+AFTT+HL+S     S  L+++++HAL +PIR+GLPRLEA +Y  +Y  DDS +KA 
Sbjct: 175 DEALAFTTTHLQSATKYSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKA- 233

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LLK AKLDF++LQ +H+KELS I+
Sbjct: 234 LLKLAKLDFNLLQKLHQKELSDIS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 145/204 (71%), Gaps = 23/204 (11%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------YDGN------DV 48
           + LK++++ ML++  D S QKL LIDA+QRLG                +DG+      DV
Sbjct: 55  QQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSAEEDV 114

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
           +T +LRFRLLRQQGY +SCD+F  FKD+ G FK SL +D+ GMLSLYEA H R+ GEDIL
Sbjct: 115 YTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDIL 174

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAI 168
           DEA+AFTT+HL+S     S  L+++++HAL +PIR+GLPRLEA +Y  +Y  DDS +KA 
Sbjct: 175 DEALAFTTTHLQSATKYSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKA- 233

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LLK AKLDF++LQ +H+KELS I+
Sbjct: 234 LLKLAKLDFNLLQKLHQKELSDIS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 144/204 (70%), Gaps = 23/204 (11%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------YDGN------DV 48
           + LK++++ ML++  D S QKL LIDA+QRLG                +DG+      DV
Sbjct: 55  QQLKEEVRKMLMAADDDSVQKLLLIDAIQRLGVAYHFESEIDEALKHMFDGSVASAEEDV 114

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
           +T +LRFRLLRQQGY +SCD+F  FKD+ G FK SL +D+ GMLSLYEA HLR+ GEDIL
Sbjct: 115 YTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHLRVHGEDIL 174

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAI 168
           DEA+AFTT+HL+S        L+++++HAL +PIR+GLPRLEA +Y  +Y  DDS  KA 
Sbjct: 175 DEALAFTTTHLQSAAKYSLNPLAEQVVHALKQPIRKGLPRLEARHYFSIYQADDSHHKA- 233

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LLK AKLDF++LQ +H+KELS I+
Sbjct: 234 LLKLAKLDFNLLQKLHQKELSDIS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143187|emb|CBI20482.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 144/204 (70%), Gaps = 23/204 (11%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------YDGN------DV 48
           + LK++++ ML++  D S QKL LIDA+QRLG                +DG+      DV
Sbjct: 55  QQLKEEVRKMLMAADDDSVQKLLLIDAIQRLGVAYHFESEIDEALKHMFDGSVASAEEDV 114

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
           +T +LRFRLLRQQGY +SCD+F  FKD+ G FK SL +D+ GMLSLYEA HLR+ GEDIL
Sbjct: 115 YTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHLRVHGEDIL 174

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAI 168
           DEA+AFTT+HL+S        L+++++HAL +PIR+GLPRLEA +Y  +Y  DDS  KA 
Sbjct: 175 DEALAFTTTHLQSAAKYSLNPLAEQVVHALKQPIRKGLPRLEARHYFSIYQADDSHHKA- 233

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LLK AKLDF++LQ +H+KELS I+
Sbjct: 234 LLKLAKLDFNLLQKLHQKELSDIS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/216 (51%), Positives = 151/216 (69%), Gaps = 28/216 (12%)

Query: 4   TID---QDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY----------------- 43
           TID   Q++  ALKQ+++ M+ +  +K  QKL +IDAVQRLG                  
Sbjct: 44  TIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSH 103

Query: 44  --DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLR 101
             D +D++ V+LRFRL RQQG +ISCD+F  FKDD GKFK SLIND+ GMLSLYEAA+L 
Sbjct: 104 DLDSDDLYVVSLRFRLFRQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLA 163

Query: 102 IRGEDILDEAVAFTTSHLESMV-----TQVSPQLSDEILHALNRPIRRGLPRLEAIYYID 156
           IRGEDILDEA+ FTT+HL+S++     + V+  L+++I H+L  P+R+   RLEA Y++D
Sbjct: 164 IRGEDILDEAIVFTTTHLKSVISISDHSHVNSNLAEQIRHSLQIPLRKAAARLEARYFLD 223

Query: 157 LYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
           +YS+DD  D+  LLKFAKLDF++LQ  H+KE SI+T
Sbjct: 224 IYSRDDLHDET-LLKFAKLDFNILQAAHQKEASIMT 258

Source: Citrus reticulata

Species: Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|433288601|gb|AGB14625.1| germacrene-D synthase [Malus x domestica]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/212 (50%), Positives = 147/212 (69%), Gaps = 21/212 (9%)

Query: 1   MDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG------------------ 42
           +DA ++Q   + LK+++++ML++  +   QKL+LID +QRLG                  
Sbjct: 43  VDAELEQ-HVQELKEEVRSMLMTSPENVSQKLNLIDDIQRLGVSYHFGNEIEEILQKIHQ 101

Query: 43  --YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHL 100
             YD +D++TVALRFRLLRQQGY +SCD+F   KD  GKFK SL++D+ G+LSLYEA HL
Sbjct: 102 SSYDLDDLYTVALRFRLLRQQGYNVSCDLFNKLKDGDGKFKESLVDDVVGLLSLYEATHL 161

Query: 101 RIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQ 160
           RI GE+ILDEA+ FTT++LES   ++SP L+  + HALN+P+R+GLPR+EA YY+ +Y +
Sbjct: 162 RIHGEEILDEALTFTTTNLESATFRLSPPLAKAVTHALNQPLRKGLPRVEARYYLSVYQE 221

Query: 161 DDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
                   LL FAKLDF+ LQ +H+KELS IT
Sbjct: 222 LRESPNETLLTFAKLDFNRLQRVHQKELSEIT 253

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
UNIPROTKB|B5A435	559	B5A435 "Sesquiterpene synthase	0.848	0.291	0.484	4.1e-45
UNIPROTKB|B2KSJ5	571	B2KSJ5 "(+)-gamma-cadinene syn	0.765	0.257	0.516	2e-43
UNIPROTKB|J7LJN5	555	J7LJN5 "Beta-caryophyllene syn	0.864	0.299	0.470	1.9e-40
UNIPROTKB|E2E2N7	555	TPS4 "Bicyclogermacrene syntha	0.776	0.268	0.503	4.9e-40
UNIPROTKB|B3TPQ6	550	B3TPQ6 "Beta-cubebene synthase	0.770	0.269	0.483	5.8e-37
UNIPROTKB|J7LP58	564	J7LP58 "Alpha-copaene/delta-ca	0.770	0.262	0.506	1.2e-36
TAIR|locus:2178657	547	TPS21 "terpene synthase 21" [A	0.875	0.307	0.453	5.7e-36
UNIPROTKB|J7LMP2	565	J7LMP2 "Bicyclogermacrene synt	0.755	0.256	0.476	8.6e-36
UNIPROTKB|Q8LSC2	558	Q8LSC2 "Germacrene A synthase	0.833	0.286	0.410	2.7e-34
UNIPROTKB|Q8GUE4	603	GerS "Geraniol synthase, chlor	0.755	0.240	0.438	2.1e-33

UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)]

 Score = 411 (149.7 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 80/165 (48%), Positives = 119/165 (72%)

Query:    26 DKSFQKLSLIDAVQRLGYDGN-DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSL 84
             ++S + + L   V+   + G+ D+++VAL FRLLRQ GY++SCD+F  F+D    FK SL
Sbjct:    93 EESLEHIYLHTYVENNCFQGSHDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSL 152

Query:    85 INDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRR 144
             + D  G+L LYEA HL + GE++LD+A+ F  + LES+V  ++  L++++ HAL RP+R+
Sbjct:   153 MEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRK 212

Query:   145 GLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELS 189
             GLPRLEA+Y+  +Y   DS +KA LLK AKLDF++LQ +H+KELS
Sbjct:   213 GLPRLEAVYFFRIYEAYDSHNKA-LLKLAKLDFNLLQSLHKKELS 256

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)]

 Score = 399 (145.5 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 78/151 (51%), Positives = 112/151 (74%)

Query:    44 DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIR 103
             +G D+H  AL FRLLRQQGYRISCDIF  F DD GKFK SL+ D  G+LSLYEA+H+   
Sbjct:   120 NGEDLHITALLFRLLRQQGYRISCDIFLKFMDDNGKFKESLVEDERGLLSLYEASHMMGH 179

Query:   104 GEDILDEAVAFTTSHLESMV---TQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQ 160
             GE +L+EA+ FTT+HL++ +   + ++P  + E+ +AL  PIR+ +PR++A  Y+++Y Q
Sbjct:   180 GEALLEEALEFTTTHLQTYIHRYSNINPSFASEVSNALKLPIRKSVPRIKAREYLEIYQQ 239

Query:   161 DDSKDKAILLKFAKLDFSMLQVIHRKELSII 191
               S ++  LL+F+KLDF++LQ +H+KELS I
Sbjct:   240 HPSHNET-LLEFSKLDFNILQKLHQKELSEI 269

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)]

 Score = 361 (132.1 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
 Identities = 81/172 (47%), Positives = 115/172 (66%)

Query:    26 DKSFQKLSLIDAVQRLGYDGN--DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVS 83
             +KS Q + L     +  YD N  D+HTVALRFRLLRQQGY IS + F  F D  GKF+ S
Sbjct:    90 EKSLQDIYLRCCNDKDDYDHNQTDLHTVALRFRLLRQQGYNISSETFNKFTDRNGKFEES 149

Query:    84 LINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ---VSPQLSDEILHALNR 140
             L +D+ GMLSLYEAAH  ++GE ILDEA+ F++S+L+S++ +    +  L+  I  A + 
Sbjct:   150 LADDVRGMLSLYEAAHCGVQGEKILDEALVFSSSNLKSILAKNHMSNSGLTARIEEAFDT 209

Query:   141 PIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
             PIR+ L    A  ++ +Y +D+S  +A LLKFA+LDF+  Q +H+KE+S +T
Sbjct:   210 PIRKCLTNFGARKFMSMYEEDESHSEA-LLKFARLDFNFSQKLHQKEISDLT 260

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901937 "beta-caryophyllene biosynthetic process" evidence=IDA

UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)]

 Score = 380 (138.8 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
 Identities = 77/153 (50%), Positives = 109/153 (71%)

Query:    43 YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRI 102
             ++ ++V T ALRFRLLRQQGYR+ CD+F  F D  G F  +L ND+ G+L LYEA+HL  
Sbjct:   107 HNDDEVRTTALRFRLLRQQGYRVPCDVFRKFTDGEGNFATALTNDVEGLLELYEASHLAT 166

Query:   103 RGEDILDEAVAFTTSHLESMVTQV---SPQLSDEILHALNRPIRRGLPRLEAIYYIDLYS 159
             RGE+ILD A+ F++SHL++++ Q    S  LS  +  AL  PIR+ L RL A  +I LY 
Sbjct:   167 RGEEILDRAMEFSSSHLQALLNQHLVGSVSLSKRVDEALKMPIRKTLTRLGARKFISLYQ 226

Query:   160 QDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
             +D+S+++ +LL FAKLDF+M+Q +H++ELS  T
Sbjct:   227 EDESRNE-LLLNFAKLDFNMVQKMHQRELSDAT 258

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)]

 Score = 351 (128.6 bits), Expect = 5.8e-37, Sum P(2) = 5.8e-37
 Identities = 72/149 (48%), Positives = 100/149 (67%)

Query:    44 DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIR 103
             DG D+ T+AL+FRLLRQQGY +S  +F  FKDD G F   L  D  G+LSLYEAA L   
Sbjct:   103 DGFDLQTLALQFRLLRQQGYNVSSGVFAKFKDDEGNFSSILSKDTHGLLSLYEAAFLGTH 162

Query:   104 GEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDS 163
             G+DILDEA+ FTT HL+S +  VS  L+  +  AL  P+ R + RL+  +YI +Y +D  
Sbjct:   163 GDDILDEAITFTTVHLKSTLPHVSAPLTKLVELALEIPLHRRMERLQTRFYISIYEEDRE 222

Query:   164 KDKAILLKFAKLDFSMLQVIHRKELSIIT 192
             ++  +LL+F+KL+F  LQ +H++EL  I+
Sbjct:   223 RND-VLLEFSKLEFLRLQSLHQRELRDIS 250

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)]

 Score = 361 (132.1 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 76/150 (50%), Positives = 105/150 (70%)

Query:    44 DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIR 103
             D  D++  +L FRLLRQ GYRISC+IF  FKD  G FK+  I  + GML  YEA HLR+R
Sbjct:   116 DSQDMYANSLSFRLLRQHGYRISCEIFEKFKDANGGFKIPNIEGVMGMLEFYEATHLRVR 175

Query:   104 GEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPI-RRGLPRLEAIYYIDLYSQDD 162
             GEDILD    F+ ++L+S++  +S  L+ ++  ALN+   RRGLPRLEA +++ +Y Q  
Sbjct:   176 GEDILDHGFVFSRNYLKSVLPSLSNPLAAQVDRALNQNSNRRGLPRLEARHFMSVYEQYA 235

Query:   163 SKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
             S D+A LLK AKL+F++LQ +H+ ELS I+
Sbjct:   236 SHDQA-LLKLAKLNFNILQSLHKVELSEIS 264

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901928 "cadinene biosynthetic process" evidence=IDA

GO:1901931 "alpha-copaene biosynthetic process" evidence=IDA

TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 78/172 (45%), Positives = 116/172 (67%)

Query:    21 LISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKF 80
             ++   DKSF  L   D  Q +  +G D++TV + F++ RQ G+++S D+F  FKD+ GKF
Sbjct:    79 IVEQLDKSFDCL---DFPQMVRQEGCDLYTVGIIFQVFRQFGFKLSADVFEKFKDENGKF 135

Query:    81 KVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNR 140
             K  L+ D  GMLSLYEAA     GEDI+DEA+AF+ SHLE + ++ SP L+  I +AL  
Sbjct:   136 KGHLVTDAYGMLSLYEAAQWGTHGEDIIDEALAFSRSHLEEISSRSSPHLAIRIKNALKH 195

Query:   141 PIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
             P  +G+ R+E   YI  Y +++S D   LL+FAK+DF++LQ++HR+EL+ +T
Sbjct:   196 PYHKGISRIETRQYISYYEEEESCDPT-LLEFAKIDFNLLQILHREELACVT 246

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0080016 "(-)-E-beta-caryophyllene synthase activity" evidence=IDA

GO:0080017 "alpha-humulene synthase activity" evidence=IDA

GO:0016106 "sesquiterpenoid biosynthetic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)]

 Score = 345 (126.5 bits), Expect = 8.6e-36, Sum P(2) = 8.6e-36
 Identities = 70/147 (47%), Positives = 103/147 (70%)

Query:    44 DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIR 103
             D +D++  +L FRLLRQQGYR+SC+IF  FKD +G F +    ++ G+L  YEA HLR+ 
Sbjct:   116 DNHDLYANSLSFRLLRQQGYRVSCEIFEKFKDVKGNFMLPNNGEVMGVLEFYEATHLRVH 175

Query:   104 GEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPI-RRGLPRLEAIYYIDLYSQDD 162
             GED+LD     +  +LES++  ++  L++++ HAL++   RRGL RLEA +Y+ +Y Q  
Sbjct:   176 GEDLLDHDFVLSREYLESVLPSLTNPLAEQVDHALHQHSNRRGLSRLEARHYMPVYEQYA 235

Query:   163 SKDKAILLKFAKLDFSMLQVIHRKELS 189
             S D+  LLK AKLDF+MLQ +H++ELS
Sbjct:   236 SHDQ-YLLKLAKLDFNMLQSLHKEELS 261

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901934 "bicyclogermacrene biosynthetic process" evidence=IDA

UNIPROTKB|Q8LSC2 Q8LSC2 "Germacrene A synthase short form" [Cichorium intybus (taxid:13427)]

 Score = 329 (120.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 69/168 (41%), Positives = 108/168 (64%)

Query:    26 DKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDR-GKFKVSL 84
             DK F++ +L D      YD  D++T ++ F++ R  G+++ CD+F  FKD   G FK S+
Sbjct:    98 DKLFKEFNLQD------YDEFDLYTTSINFQVFRHLGHKLPCDVFNKFKDSSSGTFKESI 151

Query:    85 INDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRR 144
              ND+ GML LYE+A LR+RGE ILDEA AFT + L+S+V  +   L+ +++ +L RP  +
Sbjct:   152 TNDVKGMLGLYESAQLRLRGEPILDEASAFTETQLKSVVNTLEGNLAKQVMQSLRRPFHQ 211

Query:   145 GLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
             G+P +EA  Y   Y ++ S  ++ L K AKL F+ LQ+  ++EL I++
Sbjct:   212 GMPMVEARMYFSNYDEECSTHES-LPKLAKLHFNYLQLQQKEELRIVS 258

GO:0034005 "germacrene-A synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)]

 Score = 331 (121.6 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
 Identities = 64/146 (43%), Positives = 99/146 (67%)

Query:    47 DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGED 106
             D+H V+ RFRLLRQ GY++S D+F  FKD++G FK SL  D+ GMLSLYEA+HL  +GE 
Sbjct:   141 DLHAVSTRFRLLRQHGYKVSTDVFNDFKDEKGCFKPSLSMDIKGMLSLYEASHLAFQGET 200

Query:   107 ILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDK 166
             +LDEA AF ++HL  +   + P L  ++ HAL+ P+   L +LEA +Y+D+Y +++  + 
Sbjct:   201 VLDEARAFVSTHLMDIKENIDPILHKKVEHALDMPLHWRLEKLEARWYMDIYMREEGMNS 260

Query:   167 AILLKFAKLDFSMLQVIHRKELSIIT 192
             + LL+ A L F+++Q   +  L  ++
Sbjct:   261 S-LLELAMLHFNIVQTTFQTNLKSLS 285

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027449001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	9e-79
pfam01397	177	pfam01397, Terpene_synth, Terpene synthase, N-term	2e-58
PLN02592	800	PLN02592, PLN02592, ent-copalyl diphosphate syntha	1e-16
PLN02279	784	PLN02279, PLN02279, ent-kaur-16-ene synthase	2e-12
pfam03936	270	pfam03936, Terpene_synth_C, Terpene synthase famil	2e-04

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score =  244 bits (624), Expect = 9e-79
 Identities = 96/216 (44%), Positives = 133/216 (61%), Gaps = 31/216 (14%)

Query: 7   QDEFEALKQKIKNMLISP--TDKSFQKLSLIDAVQRLG---------------------- 42
           ++E E LK++++ ML         F++L LID +QRLG                      
Sbjct: 30  EEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTE 89

Query: 43  ---YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAH 99
               + +D++T AL FRLLRQ GY +S D+F  FKD+ GKFK SL  D+ GMLSLYEA+H
Sbjct: 90  RGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASH 149

Query: 100 LRIRGEDILDEAVAFTTSHLESMVTQ---VSPQLSDEILHALNRPIRRGLPRLEAIYYID 156
           L   GEDILDEA++FTT HLE  +     + P LS EI +AL  P+   LPRLEA +YI+
Sbjct: 150 LSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIE 209

Query: 157 LYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
            Y Q+D  ++  LL+ AKLDF++LQ +H++EL I++
Sbjct: 210 FYEQEDDHNE-TLLELAKLDFNILQALHQEELKILS 244

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain

 Score =  180 bits (460), Expect = 2e-58
 Identities = 71/154 (46%), Positives = 96/154 (62%), Gaps = 26/154 (16%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG------------------------YDGN 46
           E+LK++++ ML S      ++L LIDA+QRLG                         + +
Sbjct: 24  ESLKEEVRKMLPSSYPDLLEQLELIDALQRLGISYHFEKEIKEILDQIYRNWDDNDEEED 83

Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGED 106
           D++T AL FRLLRQ GY +S D+F  FKD+ GKFK SL ND+ G+LSLYEA+HLR  GED
Sbjct: 84  DLYTTALAFRLLRQHGYDVSSDVFNKFKDEDGKFKESLTNDVKGLLSLYEASHLRTHGED 143

Query: 107 ILDEAVAFTTSHLESMVT--QVSPQLSDEILHAL 138
           ILDEA++FTT HLES+++       L+ E+ HAL
Sbjct: 144 ILDEALSFTTKHLESLLSSLSSPDNLAKEVEHAL 177

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase

 Score = 76.8 bits (189), Expect = 1e-16
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 26/169 (15%)

Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFK--DDRGKFKVSLINDLTGMLSLYEAAHLRIRG 104
           D+   A+ FRLLR  G+++S D+F  F+   +   F       +TGM +LY A+ +   G
Sbjct: 359 DIDDTAMGFRLLRLHGHQVSADVFKHFEKGGEFFCFAGQSTQAVTGMFNLYRASQVLFPG 418

Query: 105 EDILDEAVAFTTSHLESMVTQVSPQLSD----------EILHALNRPIRRGLPRLEAIYY 154
           E IL+ A  F++  L     Q + +L D          E+  AL  P    LPR+E  +Y
Sbjct: 419 EKILENAKEFSSKFLRE--KQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFY 476

Query: 155 IDLYSQDDSK------------DKAILLKFAKLDFSMLQVIHRKELSII 191
           I+ Y  +D              +    L+ AKLD++  Q +H+ E    
Sbjct: 477 IEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNF 525

Length = 800

>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 47/223 (21%)

Query: 12  ALKQKIKNML--ISPTDKSFQKLSLIDAVQRLGYD--------------------GN--- 46
           +L QK  N +  + P D+ + +LS++D ++RLG D                    G    
Sbjct: 253 SLLQKFGNAVPTVYPLDQ-YARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEI 311

Query: 47  --DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKV-SLINDLTGMLSLYEAAHLRIR 103
             D+ T AL FR+LR  GY +S D    F +D     +   + D   +L L+ A+ +   
Sbjct: 312 FLDLATCALAFRILRLNGYDVSSDPLKQFAEDHFSDSLGGYLKDTGAVLELFRASQISYP 371

Query: 104 GEDILDEAVAFTTSHLESMVTQVS-------PQLSDEILHALNRPIRRGLPRLEAIYYID 156
            E +L++  ++T+  LE  ++  S         +  E+  ALN P    L RL     I+
Sbjct: 372 DESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSIE 431

Query: 157 LYSQDDSK-----------DKAILLKFAKLDFSMLQVIHRKEL 188
            Y+ DD++                LK A  DF+  Q IHR+EL
Sbjct: 432 NYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREEL 474

Length = 784

>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 20/24 (83%)

Query: 169 LLKFAKLDFSMLQVIHRKELSIIT 192
           LL+ AKLDF++LQ +H++EL  +T
Sbjct: 1   LLELAKLDFNLLQALHQQELKELT 24

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	100.0
PLN02279	784	ent-kaur-16-ene synthase	100.0
PLN02592	800	ent-copalyl diphosphate synthase	100.0
PF01397	183	Terpene_synth: Terpene synthase, N-terminal domain	100.0

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=100.00  E-value=9e-68  Score=495.76  Aligned_cols=187  Identities=51%  Similarity=0.846  Sum_probs=178.9

Q ss_pred             hhHHHHHHHHHHHHHHhhCC--CcChhhhHHHHHHHHHhC----C--------------C-------CCChhhHHHHHHH
Q 048429            5 IDQDEFEALKQKIKNMLISP--TDKSFQKLSLIDAVQRLG----Y--------------D-------GNDVHTVALRFRL   57 (192)
Q Consensus         5 ~~~~~~e~Lk~evr~~l~~~--~~d~~~~L~lID~lqRLG----f--------------~-------~~dL~~~AL~FRL   57 (192)
                      .+.+++++||++||+|+...  +.|++++|++||+|||||    |              |       ..||++|||+|||
T Consensus        28 ~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRl  107 (542)
T cd00684          28 ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRL  107 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHH
Confidence            47889999999999999865  679999999999999999    3              3       2599999999999


Q ss_pred             HhhcCcccccccccccccccCcccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc---cCCchHHHH
Q 048429           58 LRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ---VSPQLSDEI  134 (192)
Q Consensus        58 LRqhGy~VS~DvF~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~---~~~~l~~~V  134 (192)
                      ||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||+|+.||++||++.++.   ++++|+++|
T Consensus       108 LR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V  187 (542)
T cd00684         108 LRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEI  187 (542)
T ss_pred             HHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999986   789999999


Q ss_pred             HHhcCCCccCCchhHHHhhhhhhcccCCCCChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          135 LHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       135 ~~aL~~P~~~~l~Rlear~yI~~y~~~~~~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      ++||++|||+++||+|||+||++|++++++|++ ||||||+|||+||++||+||++++
T Consensus       188 ~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~-lLelAkldfn~~Q~~hq~El~~~~  244 (542)
T cd00684         188 EYALEIPLHASLPRLEARWYIEFYEQEDDHNET-LLELAKLDFNILQALHQEELKILS  244 (542)
T ss_pred             HHHccCchhcCCchHHHHHHHHHhCCCccccHH-HHHHHHHHHHHHhHhHHHHHHHHh
Confidence            999999999999999999999999999999999 999999999999999999999875

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>PLN02279 ent-kaur-16-ene synthase

Probab=100.00  E-value=8.7e-56  Score=429.07  Aligned_cols=165  Identities=33%  Similarity=0.536  Sum_probs=154.5

Q ss_pred             CcChhhhHHHHHHHHHhC----C--------------C-------CCChhhHHHHHHHHhhcCcccccccccccccccCc
Q 048429           25 TDKSFQKLSLIDAVQRLG----Y--------------D-------GNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGK   79 (192)
Q Consensus        25 ~~d~~~~L~lID~lqRLG----f--------------~-------~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~   79 (192)
                      |.++++++|+||+|||||    |              |       ..|+++|||+|||||||||+||||||++|+|+ + 
T Consensus       267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~-  344 (784)
T PLN02279        267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H-  344 (784)
T ss_pred             cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-
Confidence            678999999999999999    3              2       15999999999999999999999999999965 4 


Q ss_pred             ccccc---hhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc-------cCCchHHHHHHhcCCCccCCchhH
Q 048429           80 FKVSL---INDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ-------VSPQLSDEILHALNRPIRRGLPRL  149 (192)
Q Consensus        80 F~~~l---~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~l~Rl  149 (192)
                      |++++   .+||+|||+||||||+++|||+|||+|+.||++||++.+++       ++++|+++|++||++|||+++||+
T Consensus       345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~Rl  424 (784)
T PLN02279        345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERL  424 (784)
T ss_pred             ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHH
Confidence            99888   59999999999999999999999999999999999998874       578899999999999999999999


Q ss_pred             HHhhhhhhcccCCC------------CChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          150 EAIYYIDLYSQDDS------------KDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       150 ear~yI~~y~~~~~------------~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      |||+||++|+.++.            +|+. ||||||+|||+||++||+||++|+
T Consensus       425 EaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~-lLeLAklDFN~~Qs~hq~EL~~l~  478 (784)
T PLN02279        425 ANRRSIENYAVDDTRILKTSYRCSNICNQD-FLKLAVEDFNFCQSIHREELKQLE  478 (784)
T ss_pred             HHHHHHHHhccccchhccccccccccccHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999998885            7999 999999999999999999999985

>PLN02592 ent-copalyl diphosphate synthase

Probab=100.00  E-value=5.3e-54  Score=416.38  Aligned_cols=166  Identities=33%  Similarity=0.588  Sum_probs=153.5

Q ss_pred             CcChhhhHHHHHHHHHhC----C--------------C---C---------CChhhHHHHHHHHhhcCcccccccccccc
Q 048429           25 TDKSFQKLSLIDAVQRLG----Y--------------D---G---------NDVHTVALRFRLLRQQGYRISCDIFGGFK   74 (192)
Q Consensus        25 ~~d~~~~L~lID~lqRLG----f--------------~---~---------~dL~~~AL~FRLLRqhGy~VS~DvF~~F~   74 (192)
                      |.+++++|++||+|||||    |              |   +         .|+++|||+|||||||||+||||||++|+
T Consensus       307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~  386 (800)
T PLN02592        307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE  386 (800)
T ss_pred             CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence            579999999999999999    2              2   1         58999999999999999999999999999


Q ss_pred             cccCcccccc---hhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhh--c------cCCchHHHHHHhcCCCcc
Q 048429           75 DDRGKFKVSL---INDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVT--Q------VSPQLSDEILHALNRPIR  143 (192)
Q Consensus        75 d~~G~F~~~l---~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~  143 (192)
                      + +|.|++.+   .+|++|||+||||||+++|||.|||+|+.||+++|++.++  +      ++++|+++|+|||++|||
T Consensus       387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~  465 (800)
T PLN02592        387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWY  465 (800)
T ss_pred             C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhh
Confidence            7 79998655   8999999999999999999999999999999999999753  1      467899999999999999


Q ss_pred             CCchhHHHhhhhhhcccCCCC-------------ChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          144 RGLPRLEAIYYIDLYSQDDSK-------------DKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       144 ~~l~Rlear~yI~~y~~~~~~-------------n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      ++|||+||||||+.|++++++             |+. ||||||+|||+||++||+||++++
T Consensus       466 ~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~-lLeLAklDFn~~Qs~hq~EL~~ls  526 (800)
T PLN02592        466 ASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNE-YLELAKLDYNNCQALHQLEWDNFQ  526 (800)
T ss_pred             cCcchHHHHHHHHHhcCCcccchhhhhccccccCCHH-HHHHHHHHHHHHHHHhHHHHHHHh
Confidence            999999999999999987764             999 999999999999999999999885

>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family

Probab=100.00  E-value=1.5e-49  Score=328.94  Aligned_cols=135  Identities=53%  Similarity=0.836  Sum_probs=118.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----C--------------C------CCChhhHHHHHHHHh
Q 048429            4 TIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----Y--------------D------GNDVHTVALRFRLLR   59 (192)
Q Consensus         4 ~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----f--------------~------~~dL~~~AL~FRLLR   59 (192)
                      +.+.+++++||++||.||.....|++++|+|||+|||||    |              |      ..||++|||+|||||
T Consensus        22 ~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLR  101 (183)
T PF01397_consen   22 EKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLR  101 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHH
Confidence            567889999999999999875458999999999999999    3              2      149999999999999


Q ss_pred             hcCcccccccccccccccCcccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhccCC---chHHHHHH
Q 048429           60 QQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSP---QLSDEILH  136 (192)
Q Consensus        60 qhGy~VS~DvF~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~---~l~~~V~~  136 (192)
                      ||||+||||||++|+|++|+|+.++++||+|||+||||||++++||+|||+|+.||++||++.+++..+   +|+++|+|
T Consensus       102 qhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~  181 (183)
T PF01397_consen  102 QHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSNLSIPDPHLAKEVKH  181 (183)
T ss_dssp             HTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHH
T ss_pred             HcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999985543   49999999


Q ss_pred             hc
Q 048429          137 AL  138 (192)
Q Consensus       137 aL  138 (192)
                      ||
T Consensus       182 AL  183 (183)
T PF01397_consen  182 AL  183 (183)
T ss_dssp             HH
T ss_pred             hC
Confidence            97

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		4e-51
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		8e-42
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		9e-42
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		9e-42
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		9e-42
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		9e-42
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		9e-42
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		1e-41
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		5e-41
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		5e-41
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		1e-28
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		2e-21
3sae_A	817	Structure Of A Three-Domain Sesquiterpene Synthase:		5e-20
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		9e-18
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		1e-17
3p5p_A	764	Crystal Structure Of Taxadiene Synthase From Pacifi		3e-17
3s9v_A	785	Abietadiene Synthase From Abies Grandis Length = 78		3e-16
3pya_A	727	Crystal Structure Of Ent-Copalyl Diphosphate Syntha		3e-13

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 139/203 (68%), Gaps = 22/203 (10%)
Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD---------------------GNDVH 49
           + LK++++ M+++P   S QKL+ ID+VQRLG                        ND++
Sbjct: 53  QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112
Query: 50  TVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILD 109
           T ++RFRLLR+ GY +SCD+F  FKD++G FK S+ +D+ G+L LY+A++LR+ GEDILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 110 EAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 169
           EA++FTT HL   V  +   LS+E+ HAL + IRRGLPR+EA +Y+ +Y   +S +KA L
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231
Query: 170 LKFAKLDFSMLQVIHRKELSIIT 192
           L+FAK+DF+MLQ +HRKELS I 
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEIC 254

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ +NML++   K    L+LID ++RLG                     + ND+
Sbjct: 45  EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ +NML++   K    L+LID ++RLG                     + ND+
Sbjct: 45  EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ +NML++   K    L+LID ++RLG                     + ND+
Sbjct: 45  EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ +NML++   K    L+LID ++RLG                     + ND+
Sbjct: 45  EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ +NML++   K    L+LID ++RLG                     + ND+
Sbjct: 47  EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 106
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 107 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 166
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 167 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 225
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 226 VLLRFAKLDFNLLQMLHKQELAQVS 250

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ +NML++   K    L+LID ++RLG                     + ND+
Sbjct: 47  EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 106
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 107 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 166
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 167 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 225
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 226 VLLRFAKLDFNLLQMLHKQELAQVS 250

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ +NML++   K    L+LID ++RLG                     + ND+
Sbjct: 32  EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 91
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 92  CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 151
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 152 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 210
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 211 VLLRFAKLDFNLLQMLHKQELAQVS 235

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ ++ML++   K    L+LID ++RLG                     + ND+
Sbjct: 45  EIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDL 104
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
           E EALK++ ++ML++   K    L+LID ++RLG                     + ND+
Sbjct: 45  EIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDL 104
Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ SK+  
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 26/182 (14%)
Query: 32  LSLIDAVQRLG---------------------YDG---NDVHTVALRFRLLRQQGYRISC 67
           L LID VQRLG                     +DG     +H  AL FRLLRQ G+ +S 
Sbjct: 68  LELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127
Query: 68  DIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ-V 126
           + F GFKD  G F  +L  D   +LSLYEA+ L + GE+ILDEA  F  SHL+ +  + +
Sbjct: 128 EAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKI 187
Query: 127 SPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRK 186
             +L++++ HAL  P+ R   RLEA++ I+ Y + +  ++ +LL+ A LD++M+Q ++++
Sbjct: 188 GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQ-VLLELAILDYNMIQSVYQR 246
Query: 187 EL 188
           +L
Sbjct: 247 DL 248

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 91/147 (61%), Gaps = 6/147 (4%)
Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFKDDRG-KFKVSLINDLTGMLSLYEAAHLRIRGE 105
           D++  AL FRLLRQ G+ IS D+F  FK+++G  FK SL  D  GML LYEA+ L  +GE
Sbjct: 100 DLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGE 159
Query: 106 DILDEAVAFTTSHLESMVTQVSPQLSDEIL----HALNRPIRRGLPRLEAIYYIDLYSQD 161
           D L+ A  F T  L+  + +   ++ + +L    H+L+ P+   +  +EA ++ID Y++ 
Sbjct: 160 DTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR 219
Query: 162 DSKDKAILLKFAKLDFSMLQVIHRKEL 188
              +  ++ + AKL+F+++Q  H++EL
Sbjct: 220 PDMN-PLIFELAKLNFNIIQATHQQEL 245

>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVS---LINDLTGMLSLYEAAHLRIR 103
           D+ T AL FRLLR   Y +S  IF  FKD  GKF  S      D+  ML+LY A+ L   
Sbjct: 347 DLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFP 406
Query: 104 GEDILDEAVAFTTSHLE--------SMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYI 155
           GE+ILDEA +F T +L         S        LS EI +AL       +PR+EA  Y 
Sbjct: 407 GENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYC 466
Query: 156 DLYSQDDSK-----------DKAILLKFAKLDFSMLQVIHRKELSIIT 192
            +Y  D ++           +    L+  KLDF+++Q IH++E+  +T
Sbjct: 467 QVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVT 514

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 85/144 (59%), Gaps = 3/144 (2%)
Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGED 106
           D+++ +L FRLLR+ G++++ ++F  FK++ G+FK SL +D  G+L LYEA+ L   GE 
Sbjct: 97  DLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGET 156
Query: 107 ILDEAVAFTTSHLESMVTQ--VSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSK 164
            L+ A  F T  LE  V +  V   L   I ++L+ P+   + R  A  +I+ Y +    
Sbjct: 157 TLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDM 216
Query: 165 DKAILLKFAKLDFSMLQVIHRKEL 188
           +  ++L+ A LD +++Q   ++EL
Sbjct: 217 N-PVVLELAILDLNIVQAQFQEEL 239

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 16  KIKNMLISPTDKSFQKLSLIDAVQRLG-----------------YDGN-----DVHTVAL 53
           ++K ML    D S ++L LID ++RLG                 Y  N     D+++ AL
Sbjct: 72  QVKMMLQEEVD-SIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTAL 130
Query: 54  RFRLLRQQGYRISCDIFGGFKDDRGK-FKVSLINDLTGMLSLYEAAHLRIRGEDILDEAV 112
           RFRLLRQ  + +S ++F  FK+ +G  FK SL++D  G+L LYEA+ L  +GE+ L  A 
Sbjct: 131 RFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLAR 190
Query: 113 AFTTSHLESMV-TQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLK 171
            F T  L+  V       L   I  AL  P    +    A  +ID Y +    +  + L+
Sbjct: 191 DFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTV-LE 249
Query: 172 FAKLDFSMLQVIHRKEL 188
            AKLDF+M+Q   ++EL
Sbjct: 250 LAKLDFNMVQAQFQQEL 266

>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 17/163 (10%)
Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLIN---DLTGMLSLYEAAHLRIR 103
           D++T AL  R LR  GY +S D+   FKD+ G+F  S      +L  +++L+ A+ L   
Sbjct: 295 DLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFP 354
Query: 104 GEDILDEAVAFTTSHL-ESMVTQVS--PQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQ 160
            E  +D+A  F   +L E++ T++S   +L  EI + +  P    +PRLEA  YID Y  
Sbjct: 355 DERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDD 414
Query: 161 D-----------DSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
           +            S   +  L+ AKLDF+++Q +H++EL ++T
Sbjct: 415 NYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLT 457

>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 56/214 (26%)
Query: 29  FQKLSLIDAVQRLGYDGN------------------------------DVHTVALRFRLL 58
           F++L  +D V+RLG D +                              D+   A+  R+L
Sbjct: 271 FERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRIL 330
Query: 59  RQQGYRISCDIFGGFKDDRGKFKVSLIN---DLTGMLSLYEAAHLRIRGEDILDEAVAFT 115
           R  GY +S D+   F+D+ G+F   L      +T ML++   +H+   GE I++EA   T
Sbjct: 331 RLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCT 390
Query: 116 TSHLESMVTQV--------SPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDD----- 162
             +L + +  V           +  E+ +AL  P  + +PRLEA  YI+ Y  DD     
Sbjct: 391 ERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGK 450
Query: 163 --------SKDKAILLKFAKLDFSMLQVIHRKEL 188
                   S +K   L+ AKLDF+ +Q IH+ EL
Sbjct: 451 TVYMMPYISNEK--YLELAKLDFNKVQSIHQTEL 482

>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 24/168 (14%)
Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLIND---LTGMLSLYEAAHLRIR 103
           D+   A+ FRLLRQ GY++S D+F  F+ + G+F   +      +TGM +LY A+ L   
Sbjct: 294 DIDDTAMAFRLLRQHGYQVSADVFKNFEKE-GEFFCFVGQSNQAVTGMFNLYRASQLAFP 352
Query: 104 GEDILDEAVAFTTSHL------ESMVTQ--VSPQLSDEILHALNRPIRRGLPRLEAIYYI 155
            E+IL  A  F+ ++L      E ++ +  +   L  EI  AL  P    LPR+E  +YI
Sbjct: 353 REEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYI 412
Query: 156 DLYSQDDS------------KDKAILLKFAKLDFSMLQVIHRKELSII 191
           D Y  ++              +    L+ AK D++  Q  H+ E  I 
Sbjct: 413 DQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIF 460

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	2e-54
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	2e-53
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	8e-51
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	2e-49
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	2e-49
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	3e-45
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	2e-39
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	5e-39
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	2e-37
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	6e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score =  180 bits (458), Expect = 2e-54
 Identities = 94/204 (46%), Positives = 138/204 (67%), Gaps = 22/204 (10%)

Query: 7   QDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG---------------------YDG 45
           +   + LK++++ M+++P   S QKL+ ID+VQRLG                        
Sbjct: 49  EKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE 108

Query: 46  NDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGE 105
           ND++T ++RFRLLR+ GY +SCD+F  FKD++G FK S+ +D+ G+L LY+A++LR+ GE
Sbjct: 109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGE 168

Query: 106 DILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKD 165
           DILDEA++FTT HL   V  +   LS+E+ HAL + IRRGLPR+EA +Y+ +Y   +S +
Sbjct: 169 DILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHN 228

Query: 166 KAILLKFAKLDFSMLQVIHRKELS 189
           K  LL+FAK+DF+MLQ +HRKELS
Sbjct: 229 K-ALLEFAKIDFNMLQFLHRKELS 251

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score =  177 bits (450), Expect = 2e-53
 Identities = 82/205 (40%), Positives = 130/205 (63%), Gaps = 20/205 (9%)

Query: 7   QDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG--------------------YDGN 46
             E EALK++ +NML++   K    L+LID ++RLG                     + N
Sbjct: 45  AKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN 104

Query: 47  DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGED 106
           D+ T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +D
Sbjct: 105 DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADD 164

Query: 107 ILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDK 166
           IL++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I      +    
Sbjct: 165 ILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKN 224

Query: 167 AILLKFAKLDFSMLQVIHRKELSII 191
            +LL+FAKLDF++LQ++H++EL+ +
Sbjct: 225 NVLLRFAKLDFNLLQMLHKQELAQV 249

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score =  170 bits (432), Expect = 8e-51
 Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 26/208 (12%)

Query: 7   QDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG------------------------ 42
           +D+ + L+ +++  + +   +    L LID VQRLG                        
Sbjct: 43  KDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDG 102

Query: 43  YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRI 102
                +H  AL FRLLRQ G+ +S + F GFKD  G F  +L  D   +LSLYEA+ L +
Sbjct: 103 VTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLAL 162

Query: 103 RGEDILDEAVAFTTSHLESMVTQ-VSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQD 161
            GE+ILDEA  F  SHL+ +  + +  +L++++ HAL  P+ R   RLEA++ I+ Y + 
Sbjct: 163 EGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK 222

Query: 162 DSKDKAILLKFAKLDFSMLQVIHRKELS 189
           +  ++ +LL+ A LD++M+Q +++++L 
Sbjct: 223 EDANQ-VLLELAILDYNMIQSVYQRDLR 249

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score =  166 bits (422), Expect = 2e-49
 Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 32/215 (14%)

Query: 8   DEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG------------------------- 42
                L   +K  L   TD   ++L LID +QR+G                         
Sbjct: 31  IRASELVTLVKMELEKETD-QIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKN 89

Query: 43  ---YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAH 99
               +  D+++ +L FRLLR+ G++++ ++F  FK++ G+FK SL +D  G+L LYEA+ 
Sbjct: 90  PFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASF 149

Query: 100 LRIRGEDILDEAVAFTTSHLESMVTQ--VSPQLSDEILHALNRPIRRGLPRLEAIYYIDL 157
           L   GE  L+ A  F T  LE  V +  V   L   I ++L+ P+   + R  A  +I+ 
Sbjct: 150 LLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEW 209

Query: 158 YSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
           Y +    +  ++L+ A LD +++Q   ++EL    
Sbjct: 210 YRKRPDMNP-VVLELAILDLNIVQAQFQEELKESF 243

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score =  167 bits (423), Expect = 2e-49
 Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 26/206 (12%)

Query: 8   DEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------------YDG 45
                +  ++K ML    D S ++L LID ++RLG                       D 
Sbjct: 64  MRAAGMIDQVKMMLQEEVD-SIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDE 122

Query: 46  NDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGK-FKVSLINDLTGMLSLYEAAHLRIRG 104
            D+++ ALRFRLLRQ  + +S ++F  FK+ +G  FK SL++D  G+L LYEA+ L  +G
Sbjct: 123 RDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQG 182

Query: 105 EDILDEAVAFTTSHLESMV-TQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDS 163
           E+ L  A  F T  L+  V       L   I  AL  P    +    A  +ID Y +   
Sbjct: 183 EETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPD 242

Query: 164 KDKAILLKFAKLDFSMLQVIHRKELS 189
            +   +L+ AKLDF+M+Q   ++EL 
Sbjct: 243 MNP-TVLELAKLDFNMVQAQFQQELK 267

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score =  156 bits (394), Expect = 3e-45
 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 34/215 (15%)

Query: 7   QDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG------------------------ 42
            D    L  +++ +L    +   Q+L LI  ++ LG                        
Sbjct: 34  LDRKAELIVQVRILLKEKME-PVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFH 92

Query: 43  ---YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRG-KFKVSLINDLTGMLSLYEAA 98
               +  D++  AL FRLLRQ G+ IS D+F  FK+++G  FK SL  D  GML LYEA+
Sbjct: 93  NNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEAS 152

Query: 99  HLRIRGEDILDEAVAFTTSHLESMV----TQVSPQLSDEILHALNRPIRRGLPRLEAIYY 154
            L  +GED L+ A  F T  L+  +     ++   L   I H+L+ P+   +  +EA ++
Sbjct: 153 FLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWF 212

Query: 155 IDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELS 189
           ID Y++    +  ++ + AKL+F+++Q  H++EL 
Sbjct: 213 IDAYARRPDMNP-LIFELAKLNFNIIQATHQQELK 246

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score =  141 bits (357), Expect = 2e-39
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 52/234 (22%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD-------------------------- 44
             LK+   ++        F++L  +D V+RLG D                          
Sbjct: 253 FVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWA 312

Query: 45  ----GNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSL---INDLTGMLSLYEA 97
                 D+   A+  R+LR  GY +S D+   F+D+ G+F   L      +T ML++   
Sbjct: 313 RENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRC 372

Query: 98  AHLRIRGEDILDEAVAFTTSHLESMVTQ--------VSPQLSDEILHALNRPIRRGLPRL 149
           +H+   GE I++EA   T  +L + +              +  E+ +AL  P  + +PRL
Sbjct: 373 SHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRL 432

Query: 150 EAIYYIDLYSQDDSKDK-----------AILLKFAKLDFSMLQVIHRKELSIIT 192
           EA  YI+ Y  DD                  L+ AKLDF+ +Q IH+ EL  + 
Sbjct: 433 EARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLR 486

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score =  140 bits (353), Expect = 5e-39
 Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 56/242 (23%)

Query: 6   DQDEFEALKQKIKNMLI----SPTDKSFQKLSLIDAVQRLGYD----------------- 44
           D +  E L+  +K              F+ + ++D +QRLG                   
Sbjct: 219 DSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRY 278

Query: 45  -------------GNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRG--KFKVSLINDLT 89
                          D+   A+ FRLLRQ GY++S D+F  F+ +     F       +T
Sbjct: 279 WTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVT 338

Query: 90  GMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ--------VSPQLSDEILHALNRP 141
           GM +LY A+ L    E+IL  A  F+ ++L     +        +   L  EI  AL  P
Sbjct: 339 GMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIP 398

Query: 142 IRRGLPRLEAIYYIDLYSQDDSKDKA------------ILLKFAKLDFSMLQVIHRKELS 189
               LPR+E  +YID Y  ++                   L+ AK D++  Q  H+ E  
Sbjct: 399 WYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458

Query: 190 II 191
           I 
Sbjct: 459 IF 460

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score =  136 bits (342), Expect = 2e-37
 Identities = 65/234 (27%), Positives = 97/234 (41%), Gaps = 52/234 (22%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD-------------------------- 44
             + +    +         ++L ++D + RLG                            
Sbjct: 281 SVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWG 340

Query: 45  ----GNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVS---LINDLTGMLSLYEA 97
                 D+ T AL FRLLR   Y +S  IF  FKD  GKF  S      D+  ML+LY A
Sbjct: 341 RLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRA 400

Query: 98  AHLRIRGEDILDEAVAFTTSHLESMVTQ--------VSPQLSDEILHALNRPIRRGLPRL 149
           + L   GE+ILDEA +F T +L   + +            LS EI +AL       +PR+
Sbjct: 401 SQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRV 460

Query: 150 EAIYYIDLYSQDDSKDKA-----------ILLKFAKLDFSMLQVIHRKELSIIT 192
           EA  Y  +Y  D ++                L+  KLDF+++Q IH++E+  +T
Sbjct: 461 EAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVT 514

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score =  131 bits (330), Expect = 6e-36
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 50/234 (21%)

Query: 7   QDEFEALKQKIKNML--ISPTDKSFQKLSLIDAVQRLGYD-------------------- 44
                 L  K    +  +   D   ++LSL+D ++ LG                      
Sbjct: 224 FTFLNNLLDKFGGCVPCMYSID-LLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSE 282

Query: 45  ----------GNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLIN---DLTGM 91
                       D++T AL  R LR  GY +S D+   FKD+ G+F  S      +L  +
Sbjct: 283 RGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSV 342

Query: 92  LSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ---VSPQLSDEILHALNRPIRRGLPR 148
           ++L+ A+ L    E  +D+A  F   +L   +      + +L  EI + +  P    +PR
Sbjct: 343 VNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402

Query: 149 LEAIYYIDLYSQDDSKDKAI-----------LLKFAKLDFSMLQVIHRKELSII 191
           LEA  YID Y  +    +              L+ AKLDF+++Q +H++EL ++
Sbjct: 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLL 456

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 39/205 (19%), Positives = 64/205 (31%), Gaps = 54/205 (26%)

Query: 4   TIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYDGNDV---HTV-------AL 53
            + +  ++ L   IK     P   S      I+   RL Y+ N V   + V        L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKL 140

Query: 54  RFRL--LRQQGYRISCDIFG--GFKDDRGKFKVSLINDLTGMLSLYEAAHLRI------- 102
           R  L  LR     +   I G  G     G  K  +  D+     +      +I       
Sbjct: 141 RQALLELRPAKNVL---IDGVLGS----G--KTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 103 --RGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRP-----IRRGLPRL--EAIY 153
               E +L+         L+ ++ Q+ P  +    H+ N       I+  L RL     Y
Sbjct: 192 CNSPETVLE--------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 154 YIDLYSQDDSKDKAILLKFAKLDFS 178
              L    + ++      F   + S
Sbjct: 244 ENCLLVLLNVQNAKAWNAF---NLS 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	100.0
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	100.0
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	100.0
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	100.0
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	100.0
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	100.0

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=100.00  E-value=8.6e-68  Score=495.14  Aligned_cols=187  Identities=31%  Similarity=0.510  Sum_probs=177.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----C--------------C----------CCChhhHHHHH
Q 048429            4 TIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----Y--------------D----------GNDVHTVALRF   55 (192)
Q Consensus         4 ~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----f--------------~----------~~dL~~~AL~F   55 (192)
                      +.+++++++||++||+|+.+ ..|++++|+|||+|||||    |              |          ..|||+|||+|
T Consensus        27 ~~~~~~~~~Lk~~V~~~~~~-~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~F  105 (543)
T 2ong_A           27 DKHVIRASELVTLVKMELEK-ETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAF  105 (543)
T ss_dssp             THHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHH
Confidence            56899999999999999986 458999999999999999    3              2          14999999999


Q ss_pred             HHHhhcCcccccccccccccccCcccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc-c-CCchHHH
Q 048429           56 RLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ-V-SPQLSDE  133 (192)
Q Consensus        56 RLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-~-~~~l~~~  133 (192)
                      ||||||||+||||||++|+|++|+|++++++||+|||+|||||||++|||+|||+|+.||++||++.+++ + +++|+++
T Consensus       106 RlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~  185 (543)
T 2ong_A          106 RLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTR  185 (543)
T ss_dssp             HHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSHHHHH
T ss_pred             HHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCcHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999886 5 7899999


Q ss_pred             HHHhcCCCccCCchhHHHhhhhhhcccCCCCChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          134 ILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       134 V~~aL~~P~~~~l~Rlear~yI~~y~~~~~~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      |++||++|||+++||+|||+||+.|++++++|+. ||||||+|||+||++||+||++++
T Consensus       186 V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~-lLelAkldFn~~Q~~hq~El~~l~  243 (543)
T 2ong_A          186 IAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPV-VLELAILDLNIVQAQFQEELKESF  243 (543)
T ss_dssp             HHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHhccchHHHHHHHHHHhccCccccHH-HHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999999999874

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=2.2e-67  Score=493.65  Aligned_cols=189  Identities=51%  Similarity=0.889  Sum_probs=179.5

Q ss_pred             chhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----C---------------C--CCChhhHHHHHHHHhhc
Q 048429            3 ATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----Y---------------D--GNDVHTVALRFRLLRQQ   61 (192)
Q Consensus         3 ~~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----f---------------~--~~dL~~~AL~FRLLRqh   61 (192)
                      .+.+.+|+++||++||+||.....|++++|+|||+|||||    |               +  ..|||+|||+|||||||
T Consensus        45 ~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~h  124 (554)
T 3g4d_A           45 DAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREH  124 (554)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence            4678999999999999999754579999999999999999    4               0  15999999999999999


Q ss_pred             CcccccccccccccccCcccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhccCCchHHHHHHhcCCC
Q 048429           62 GYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRP  141 (192)
Q Consensus        62 Gy~VS~DvF~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~l~~~V~~aL~~P  141 (192)
                      ||+||||||++|+|++|+|++++.+|++|||+||||||+++|||+|||+|+.||++||++.++.++++|+++|.|||++|
T Consensus       125 Gy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P  204 (554)
T 3g4d_A          125 GYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQS  204 (554)
T ss_dssp             TCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCC
T ss_pred             CCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998878889999999999999


Q ss_pred             ccCCchhHHHhhhhhhcccCCCCChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          142 IRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       142 ~~~~l~Rlear~yI~~y~~~~~~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      ||+++||+||||||+.|++++++|+. ||+|||+|||+||++||+||+++|
T Consensus       205 ~~~~l~rlear~yI~~Y~~~~~~n~~-lLelAkldFn~~Q~~hq~El~~l~  254 (554)
T 3g4d_A          205 IRRGLPRVEARHYLSVYQDIESHNKA-LLEFAKIDFNMLQFLHRKELSEIC  254 (554)
T ss_dssp             TTTSCHHHHHHHHHHHHHSSTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHhCcCccccHH-HHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999 999999999999999999999874

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=1.2e-67  Score=495.46  Aligned_cols=188  Identities=37%  Similarity=0.672  Sum_probs=177.8

Q ss_pred             chhhHHHHHHHHHHHHHHhhCCCc-ChhhhHHHHHHHHHhC----C-------------C-------CCChhhHHHHHHH
Q 048429            3 ATIDQDEFEALKQKIKNMLISPTD-KSFQKLSLIDAVQRLG----Y-------------D-------GNDVHTVALRFRL   57 (192)
Q Consensus         3 ~~~~~~~~e~Lk~evr~~l~~~~~-d~~~~L~lID~lqRLG----f-------------~-------~~dL~~~AL~FRL   57 (192)
                      .+.+++|+++||++||+||.. .. +++++|+|||+|||||    |             .       ..||++|||+|||
T Consensus        39 ~~~~~~~~e~Lk~eVr~~l~~-~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~FRL  117 (555)
T 3n0f_A           39 IEVYKDKAKKLEAEVRREINN-EKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRL  117 (555)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHHHHH
Confidence            467899999999999999975 55 8999999999999999    4             0       2599999999999


Q ss_pred             HhhcCcccccccccccccccCcccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhh-ccCCchHHHHHH
Q 048429           58 LRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVT-QVSPQLSDEILH  136 (192)
Q Consensus        58 LRqhGy~VS~DvF~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~-~~~~~l~~~V~~  136 (192)
                      ||||||+||||||++|+|++|+|++++.+||+|||+||||||+++|||+|||+|+.||++||++.+. .++++|+++|++
T Consensus       118 LR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~  197 (555)
T 3n0f_A          118 LRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNH  197 (555)
T ss_dssp             HHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHH
T ss_pred             HHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999765 568899999999


Q ss_pred             hcCCCccCCchhHHHhhhhhhcccCCCCChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          137 ALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       137 aL~~P~~~~l~Rlear~yI~~y~~~~~~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      ||++|||+++||+|||+||+.|++++++|+. ||||||+|||+||++||+||++||
T Consensus       198 aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~-lLelAKlDFN~~Q~~hq~EL~~ls  252 (555)
T 3n0f_A          198 ALELPLHRRTQRLEAVWSIEAYRKKEDANQV-LLELAILDYNMIQSVYQRDLRETS  252 (555)
T ss_dssp             HHHSCTTTSCHHHHHHHHHHHHTTCTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcccCchHHHHHHHHHHhcccccccHH-HHHHHHHhHHHHHHHhHHHHHHHH
Confidence            9999999999999999999999999999999 999999999999999999999874

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=2.4e-67  Score=492.98  Aligned_cols=189  Identities=46%  Similarity=0.820  Sum_probs=179.5

Q ss_pred             chhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----C--------------C--CCChhhHHHHHHHHhhcC
Q 048429            3 ATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----Y--------------D--GNDVHTVALRFRLLRQQG   62 (192)
Q Consensus         3 ~~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----f--------------~--~~dL~~~AL~FRLLRqhG   62 (192)
                      .+.+.+|+++||++||+||.....+++++|+|||+|||||    |              |  ..||++|||+||||||||
T Consensus        41 ~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~dl~~~al~FRLLR~hG  120 (550)
T 3m00_A           41 AEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHG  120 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC
Confidence            3568899999999999999743569999999999999999    4              3  369999999999999999


Q ss_pred             cccccccccccccccCcccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhccCCchHHHHHHhcCCCc
Q 048429           63 YRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPI  142 (192)
Q Consensus        63 y~VS~DvF~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~l~~~V~~aL~~P~  142 (192)
                      |+||||||++|+|++|+|++++.+|++|||+||||||+++|||+|||+|+.||++||++.+++++++|+++|.|||++||
T Consensus       121 y~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~  200 (550)
T 3m00_A          121 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCL  200 (550)
T ss_dssp             CCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCS
T ss_pred             CCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999988788899999999999999


Q ss_pred             cCCchhHHHhhhhh-hcccCCCCChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          143 RRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       143 ~~~l~Rlear~yI~-~y~~~~~~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      |+++||+||||||+ .|++++++|+. ||+|||+|||+||++||+||+++|
T Consensus       201 ~~~l~rlear~yI~~~Y~~~~~~n~~-lLelAkldFn~~Q~~hq~EL~~l~  250 (550)
T 3m00_A          201 HKGVPRVETRFFISSIYDKEQSKNNV-LLRFAKLDFNLLQMLHKQELAQVS  250 (550)
T ss_dssp             TTSCHHHHHHHHHHHTGGGCTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHhcccccccHH-HHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999 99999999999 999999999999999999999874

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=100.00  E-value=1.6e-67  Score=495.87  Aligned_cols=187  Identities=35%  Similarity=0.536  Sum_probs=174.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----------------C-C-----CCChhhHHHHHHHHhhc
Q 048429            4 TIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----------------Y-D-----GNDVHTVALRFRLLRQQ   61 (192)
Q Consensus         4 ~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----------------f-~-----~~dL~~~AL~FRLLRqh   61 (192)
                      +.+++++++||++||+|+.+ ..|++++|+|||+|||||                | .     ..||++|||+|||||||
T Consensus        60 ~~~~~~~~~Lk~~Vr~~~~~-~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~Dl~~~al~FRlLR~h  138 (569)
T 2j5c_A           60 EKHLMRAAGMIDQVKMMLQE-EVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQY  138 (569)
T ss_dssp             --CHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCcccCChhhhhHHhHHHHhc
Confidence            46889999999999999986 458999999999999999                3 1     24999999999999999


Q ss_pred             CcccccccccccccccC-cccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhcc-CCchHHHHHHhcC
Q 048429           62 GYRISCDIFGGFKDDRG-KFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQV-SPQLSDEILHALN  139 (192)
Q Consensus        62 Gy~VS~DvF~~F~d~~G-~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~-~~~l~~~V~~aL~  139 (192)
                      ||+||||||++|+|++| +|++++++||+|||+|||||||++|||+|||+|+.||++||++.++++ +++|+++|++||+
T Consensus       139 Gy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~  218 (569)
T 2j5c_A          139 DFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALE  218 (569)
T ss_dssp             TCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHH
T ss_pred             CCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhc
Confidence            99999999999999999 999999999999999999999999999999999999999999988766 8899999999999


Q ss_pred             CCccCCchhHHHhhhhhhcccCCCCChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          140 RPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       140 ~P~~~~l~Rlear~yI~~y~~~~~~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      +|||+++||+|||+||+.|++++++|+. ||||||+|||+||++||+||++|+
T Consensus       219 ~P~~~~l~rlear~yI~~Y~~~~~~n~~-lLelAkldFn~~Q~~hq~EL~~l~  270 (569)
T 2j5c_A          219 LPTHWRVQMPNARSFIDAYKRRPDMNPT-VLELAKLDFNMVQAQFQQELKEAS  270 (569)
T ss_dssp             SCGGGCCSHHHHHHHHHHHTTCTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCcHHHHHHHHHHHhccCccccHH-HHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 999999999999999999999874

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=100.00  E-value=3.9e-67  Score=491.46  Aligned_cols=187  Identities=35%  Similarity=0.570  Sum_probs=176.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----C--------------C-----C----CChhhHHHHHH
Q 048429            4 TIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----Y--------------D-----G----NDVHTVALRFR   56 (192)
Q Consensus         4 ~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----f--------------~-----~----~dL~~~AL~FR   56 (192)
                      +.+++++++||++||+|+.+ ..|++++|+|||+|||||    |              |     .    .|||+|||+||
T Consensus        31 ~~~~~~~~~Lk~~V~~~~~~-~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FR  109 (549)
T 1n1b_A           31 ERHLDRKAELIVQVRILLKE-KMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFR  109 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhc-ccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhh
Confidence            46889999999999999986 459999999999999999    3              2     1    59999999999


Q ss_pred             HHhhcCcccccccccccccccC-cccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc---c-CCchH
Q 048429           57 LLRQQGYRISCDIFGGFKDDRG-KFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ---V-SPQLS  131 (192)
Q Consensus        57 LLRqhGy~VS~DvF~~F~d~~G-~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~---~-~~~l~  131 (192)
                      |||||||+||||||++|+|++| +|++++++||+|||+||||||+++|||+|||+|+.||++||++.+++   + +++|+
T Consensus       110 lLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~  189 (549)
T 1n1b_A          110 LLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLL  189 (549)
T ss_dssp             HHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHH
T ss_pred             HHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHH
Confidence            9999999999999999999999 99999999999999999999999999999999999999999999875   5 78899


Q ss_pred             HHHHHhcCCCccCCchhHHHhhhhhhcccCCCCChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          132 DEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       132 ~~V~~aL~~P~~~~l~Rlear~yI~~y~~~~~~n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      ++|++||++|||+++||+|||+||+.|++++++|+. ||||||+|||+||++||+||++++
T Consensus       190 ~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~-lLelAkldFn~~Q~~hq~El~~l~  249 (549)
T 1n1b_A          190 LWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPL-IFELAKLNFNIIQATHQQELKDLS  249 (549)
T ss_dssp             HHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCchhcCchHHHHHHHHHHhcccccccHH-HHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 999999999999999999999874

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=100.00  E-value=5.7e-58  Score=442.75  Aligned_cols=167  Identities=34%  Similarity=0.579  Sum_probs=156.0

Q ss_pred             CcChhhhHHHHHHHHHhC----C--------------C-C-----------CChhhHHHHHHHHhhcCcccccccccccc
Q 048429           25 TDKSFQKLSLIDAVQRLG----Y--------------D-G-----------NDVHTVALRFRLLRQQGYRISCDIFGGFK   74 (192)
Q Consensus        25 ~~d~~~~L~lID~lqRLG----f--------------~-~-----------~dL~~~AL~FRLLRqhGy~VS~DvF~~F~   74 (192)
                      |.+++++|++||+|||||    |              | .           .||++|||+|||||||||+||||||++|+
T Consensus       243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~  322 (764)
T 3p5p_A          243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK  322 (764)
T ss_dssp             CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred             CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence            679999999999999999    2              2 1           38999999999999999999999999999


Q ss_pred             cccCccccc---chhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc---cCCchHHHHHHhcCCCccCCchh
Q 048429           75 DDRGKFKVS---LINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ---VSPQLSDEILHALNRPIRRGLPR  148 (192)
Q Consensus        75 d~~G~F~~~---l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~l~R  148 (192)
                      |++|+|+++   +.+|++|||+||||||+++|||+|||+|+.||++||++.+++   ++++|+++|++||++|||+++||
T Consensus       323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R  402 (764)
T 3p5p_A          323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR  402 (764)
T ss_dssp             CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred             cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence            999999974   689999999999999999999999999999999999998762   57889999999999999999999


Q ss_pred             HHHhhhhhhcccCCCC------------ChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          149 LEAIYYIDLYSQDDSK------------DKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       149 lear~yI~~y~~~~~~------------n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      +|||+||+.|++++.|            |+. ||||||+|||+||++||+||++|+
T Consensus       403 lear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~-lLelAKlDFN~~Q~~hq~EL~~l~  457 (764)
T 3p5p_A          403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSK-CLELAKLDFNIVQSLHQEELKLLT  457 (764)
T ss_dssp             HHHHHHHHHCCTTCCEESSSEECCTTTSCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchhhhcccccccccccHH-HHHHHHHHHHHHHHHhHHHhhhhc
Confidence            9999999999988763            899 999999999999999999999874

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=100.00  E-value=1.1e-57  Score=441.69  Aligned_cols=167  Identities=34%  Similarity=0.578  Sum_probs=155.7

Q ss_pred             CcChhhhHHHHHHHHHhC----C--------------C-C-----------CChhhHHHHHHHHhhcCcccccccccccc
Q 048429           25 TDKSFQKLSLIDAVQRLG----Y--------------D-G-----------NDVHTVALRFRLLRQQGYRISCDIFGGFK   74 (192)
Q Consensus        25 ~~d~~~~L~lID~lqRLG----f--------------~-~-----------~dL~~~AL~FRLLRqhGy~VS~DvF~~F~   74 (192)
                      |.+++++|++||+|||||    |              | .           .||++|||+|||||||||+||||||++|+
T Consensus       267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~  346 (785)
T 3s9v_A          267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR  346 (785)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred             CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            678999999999999999    2              2 1           38999999999999999999999999999


Q ss_pred             cccCcccccc---hhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc--------cCCchHHHHHHhcCCCcc
Q 048429           75 DDRGKFKVSL---INDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ--------VSPQLSDEILHALNRPIR  143 (192)
Q Consensus        75 d~~G~F~~~l---~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~  143 (192)
                      |++|+|++++   .+|++|||+||||||+++|||+|||+|+.||++||++.+..        ++++|+++|+|||++|||
T Consensus       347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~  426 (785)
T 3s9v_A          347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH  426 (785)
T ss_dssp             CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred             hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence            9999999865   69999999999999999999999999999999999998652        568899999999999999


Q ss_pred             CCchhHHHhhhhhhcccCCCC------------ChHHHHHHHHhhhHHHHHHhHHHhhhcC
Q 048429          144 RGLPRLEAIYYIDLYSQDDSK------------DKAILLKFAKLDFSMLQVIHRKELSIIT  192 (192)
Q Consensus       144 ~~l~Rlear~yI~~y~~~~~~------------n~~~lLeLAklDFn~~Qs~hq~EL~~ls  192 (192)
                      +++||+|||+||+.|++++.|            |+. ||||||+|||+||++||+||++|+
T Consensus       427 ~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~-lLelAKlDFN~~Q~~hq~EL~~ls  486 (785)
T 3s9v_A          427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEK-YLELAKLDFNKVQSIHQTELQDLR  486 (785)
T ss_dssp             GCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHhcccchhhhcccccccccccHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988764            999 999999999999999999999874

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=100.00  E-value=1.2e-57  Score=443.05  Aligned_cols=181  Identities=37%  Similarity=0.590  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHhhC-----CCcChhhhHHHHHHHHHhC----C--------------C-C-----------CChhhHHHH
Q 048429           10 FEALKQKIKNMLIS-----PTDKSFQKLSLIDAVQRLG----Y--------------D-G-----------NDVHTVALR   54 (192)
Q Consensus        10 ~e~Lk~evr~~l~~-----~~~d~~~~L~lID~lqRLG----f--------------~-~-----------~dL~~~AL~   54 (192)
                      .+-|..-|++ +.+     .|.+++++|++||+|||||    |              | .           .||++|||+
T Consensus       276 ~~YL~~~~~~-~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~  354 (817)
T 3sdr_A          276 LEFLNSVMIK-FGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALG  354 (817)
T ss_dssp             HHHHHHHHHH-HSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHH
T ss_pred             HHHHHHHHHh-cCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHH
Confidence            3445555554 332     2679999999999999999    2              2 1           389999999


Q ss_pred             HHHHhhcCcccccccccccccccCcccccc---hhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc------
Q 048429           55 FRLLRQQGYRISCDIFGGFKDDRGKFKVSL---INDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ------  125 (192)
Q Consensus        55 FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l---~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~------  125 (192)
                      |||||||||+||||||++|+|++|+|++++   .+|++|||+||||||+++|||+|||+|+.||++||++.+..      
T Consensus       355 FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~  434 (817)
T 3sdr_A          355 FRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSA  434 (817)
T ss_dssp             HHHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSH
T ss_pred             HHHHHHcCCCccHhHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccc
Confidence            999999999999999999999999999855   79999999999999999999999999999999999998752      


Q ss_pred             --cCCchHHHHHHhcCCCccCCchhHHHhhhhhhcccCCCC------------ChHHHHHHHHhhhHHHHHHhHHHhhhc
Q 048429          126 --VSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSK------------DKAILLKFAKLDFSMLQVIHRKELSII  191 (192)
Q Consensus       126 --~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~y~~~~~~------------n~~~lLeLAklDFn~~Qs~hq~EL~~l  191 (192)
                        ++++|+++|+|||++|||+++||+|||+||++|++++.|            |+. ||||||+|||+||++||+||++|
T Consensus       435 ~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~-lLelAKlDFN~~Q~~hq~EL~~l  513 (817)
T 3sdr_A          435 WNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEK-FLELGKLDFNIIQSIHQEEMKNV  513 (817)
T ss_dssp             HHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHH-HHHHHHHHHHHHHHHhhhhhhhh
Confidence              247899999999999999999999999999999988763            899 99999999999999999999987


Q ss_pred             C
Q 048429          192 T  192 (192)
Q Consensus       192 s  192 (192)
                      +
T Consensus       514 s  514 (817)
T 3sdr_A          514 T  514 (817)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=100.00  E-value=1.9e-56  Score=429.82  Aligned_cols=186  Identities=33%  Similarity=0.538  Sum_probs=167.0

Q ss_pred             hhHHHHHHHHHHHHHHhhCC----CcChhhhHHHHHHHHHhC----C--------------C------------CCChhh
Q 048429            5 IDQDEFEALKQKIKNMLISP----TDKSFQKLSLIDAVQRLG----Y--------------D------------GNDVHT   50 (192)
Q Consensus         5 ~~~~~~e~Lk~evr~~l~~~----~~d~~~~L~lID~lqRLG----f--------------~------------~~dL~~   50 (192)
                      ...+..+.|+..|++...+.    |.+++++|++||+|||||    |              |            ..||++
T Consensus       218 ~d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~  297 (727)
T 3pya_A          218 RDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDD  297 (727)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHH
Confidence            34667789999999876433    579999999999999999    2              2            138999


Q ss_pred             HHHHHHHHhhcCcccccccccccccccCccccc---chhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhc--
Q 048429           51 VALRFRLLRQQGYRISCDIFGGFKDDRGKFKVS---LINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ--  125 (192)
Q Consensus        51 ~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~---l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~--  125 (192)
                      |||+|||||||||+||||||++|+ ++|+|++.   ..+|++|||+||||||+++|||+|||+|+.||++||++.+..  
T Consensus       298 tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~  376 (727)
T 3pya_A          298 TAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREE  376 (727)
T ss_dssp             HHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999 88999843   368999999999999999999999999999999999997642  


Q ss_pred             ------cCCchHHHHHHhcCCCccCCchhHHHhhhhhhcccCCC-------------CChHHHHHHHHhhhHHHHHHhHH
Q 048429          126 ------VSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDS-------------KDKAILLKFAKLDFSMLQVIHRK  186 (192)
Q Consensus       126 ------~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~y~~~~~-------------~n~~~lLeLAklDFn~~Qs~hq~  186 (192)
                            ++++|+++|+|||++|||+++||+|||+||+.|+++++             +|+. ||||||+|||+||++||+
T Consensus       377 ~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~-lLelAKlDFN~~Q~~hq~  455 (727)
T 3pya_A          377 LIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNG-YLELAKQDYNNCQAQHQL  455 (727)
T ss_dssp             CCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHH-HHHHHHHhHHHHHHHhHH
Confidence                  25789999999999999999999999999999997654             5999 999999999999999999


Q ss_pred             HhhhcC
Q 048429          187 ELSIIT  192 (192)
Q Consensus       187 EL~~ls  192 (192)
                      ||++||
T Consensus       456 EL~~ls  461 (727)
T 3pya_A          456 EWDIFQ  461 (727)
T ss_dssp             HHHHHH
T ss_pred             HHhhhh
Confidence            999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d5easa1	197	a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase	7e-56
d1n1ba1	207	a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha	5e-51
d5easa2	328	a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase	2e-06
d1n1ba2	328	a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth	3e-06

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  173 bits (439), Expect = 7e-56
 Identities = 70/176 (39%), Positives = 111/176 (63%), Gaps = 21/176 (11%)

Query: 9   EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG--------------------YDGNDV 48
           E EALK++ ++ML++   K    L+LID ++RLG                     + ND+
Sbjct: 22  EIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDL 81

Query: 49  HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
            T AL+FRLLRQ G+ IS +IF  F+D+ GKFK SL +D+ G+L+LYEA+H+R   +DIL
Sbjct: 82  CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 141

Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDS 163
           ++A+AF+T HLES    +   L +++ HAL + + +G+PR+E  ++I  +Y ++ S
Sbjct: 142 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS 197

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  161 bits (409), Expect = 5e-51
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 33/184 (17%)

Query: 11  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLG---------------------------Y 43
             L  +++ +L    +   Q+L LI  ++ LG                            
Sbjct: 24  AELIVQVRILLKEKME-PVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEV 82

Query: 44  DGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRG-KFKVSLINDLTGMLSLYEAAHLRI 102
           +  D++  AL FRLLRQ G+ IS D+F  FK+++G  FK SL  D  GML LYEA+ L  
Sbjct: 83  EKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLR 142

Query: 103 RGEDILDEAVAFTTSHLESMV----TQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLY 158
           +GED L+ A  F T  L+  +     ++   L   I H+L+ P+   +  +EA ++ID Y
Sbjct: 143 KGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAY 202

Query: 159 SQDD 162
           ++  
Sbjct: 203 ARRP 206

>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 13/25 (52%), Positives = 24/25 (96%)

Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           +LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 4   VLLRFAKLDFNLLQMLHKQELAQVS 28

>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 8/25 (32%), Positives = 19/25 (76%)

Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
           ++ + AKL+F+++Q  H++EL  ++
Sbjct: 4   LIFELAKLNFNIIQATHQQELKDLS 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d5easa1	197	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0
d1n1ba1	207	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.5e-61  Score=401.45  Aligned_cols=161  Identities=44%  Similarity=0.791  Sum_probs=152.2

Q ss_pred             chhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----C--------------C--CCChhhHHHHHHHHhhcC
Q 048429            3 ATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----Y--------------D--GNDVHTVALRFRLLRQQG   62 (192)
Q Consensus         3 ~~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----f--------------~--~~dL~~~AL~FRLLRqhG   62 (192)
                      .+.|++++++||++||+||.++..++.++|+|||+|||||    |              |  ..||++|||+||||||||
T Consensus        16 ~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~dl~~~AL~FRLLRqhG   95 (197)
T d5easa1          16 AEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHG   95 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence            3578999999999999999875678999999999999999    3              2  479999999999999999


Q ss_pred             cccccccccccccccCcccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhhccCCchHHHHHHhcCCCc
Q 048429           63 YRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQVSPQLSDEILHALNRPI  142 (192)
Q Consensus        63 y~VS~DvF~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~l~~~V~~aL~~P~  142 (192)
                      |+||||||++|+|++|+|++++++||+|||+||||||++++||+|||+|+.||+.||++.+++++++|+.+|.|||++|+
T Consensus        96 y~Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~l~~~V~~aL~~P~  175 (197)
T d5easa1          96 FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCL  175 (197)
T ss_dssp             CCCCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCS
T ss_pred             cccCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHhhhh-hhcccCCC
Q 048429          143 RRGLPRLEAIYYI-DLYSQDDS  163 (192)
Q Consensus       143 ~~~l~Rlear~yI-~~y~~~~~  163 (192)
                      |||+||+|||||| ++|+++++
T Consensus       176 h~~l~rleaR~yI~~~Ye~e~s  197 (197)
T d5easa1         176 HKGVPRVETRFFISSIYDKEQS  197 (197)
T ss_dssp             TTSCHHHHHHHHHHHTGGGCTT
T ss_pred             cCCCcHHHHHHHHHHHhcccCC
Confidence            9999999999999 57988753

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=9.9e-62  Score=405.11  Aligned_cols=161  Identities=35%  Similarity=0.556  Sum_probs=149.3

Q ss_pred             CchhhHHHHHHHHHHHHHHhhCCCcChhhhHHHHHHHHHhC----C----------------C-------CCChhhHHHH
Q 048429            2 DATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLG----Y----------------D-------GNDVHTVALR   54 (192)
Q Consensus         2 ~~~~~~~~~e~Lk~evr~~l~~~~~d~~~~L~lID~lqRLG----f----------------~-------~~dL~~~AL~   54 (192)
                      ..+.|.+|+++||++||+|+.+ +.|+.++|+|||+|||||    |                |       ..|||+|||+
T Consensus        15 ~~e~~~~r~e~Lkeevr~ml~~-~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~~~~~~~~DL~~~AL~   93 (207)
T d1n1ba1          15 TEERHLDRKAELIVQVRILLKE-KMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALG   93 (207)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhccccccccccHHHHHHH
Confidence            3478899999999999999986 578999999999999999    3                1       2599999999


Q ss_pred             HHHHhhcCcccccccccccccccC-cccccchhhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHhhh----ccCCc
Q 048429           55 FRLLRQQGYRISCDIFGGFKDDRG-KFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVT----QVSPQ  129 (192)
Q Consensus        55 FRLLRqhGy~VS~DvF~~F~d~~G-~F~~~l~~dv~glL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~----~~~~~  129 (192)
                      |||||||||+||||||++|+|++| +|++++.+||+|||+||||||+++|||+|||+|+.||++||++.++    .++++
T Consensus        94 FRLLRqhGy~VS~dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~l~~~~~~~~~~  173 (207)
T d1n1ba1          94 FRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDEN  173 (207)
T ss_dssp             HHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHH
T ss_pred             HHHHHHcCCCCCHHHHHHhccCCCCchhhhHHHhHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            999999999999999999999999 8999999999999999999999999999999999999999999875    35789


Q ss_pred             hHHHHHHhcCCCccCCchhHHHhhhhhhcccCCC
Q 048429          130 LSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDS  163 (192)
Q Consensus       130 l~~~V~~aL~~P~~~~l~Rlear~yI~~y~~~~~  163 (192)
                      |+.+|.|||+.||||+|||+||||||+.|+++++
T Consensus       174 l~~~V~~AL~~P~~~~l~rleaR~yI~~Ye~~~d  207 (207)
T d1n1ba1         174 LLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD  207 (207)
T ss_dssp             HHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCccCCCcHHHHHHhHHHhCCCCC
Confidence            9999999999999999999999999999998763