Citrus Sinensis ID: 048431

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL
cHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEccccccccEEEEEcEEEEccccccccccccEEEEEEEEEEEEEEccEEEcccccccccccccccccccccEEEEEEEEccEEEEcEEEEccccEEEEEEEEEcEEEEEEEEEccccccccccccccccccEEEEEEEEEccccEEEEccccccEEEEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEccccccEEEEEEEEEEcccccccccc
cHHHHHHHHHHHHHHHHHHccccccccccEEEEHccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEccccccEcccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccEEccccccccccccccccc
MDKFFSTLLYAFLLVLGTnnllhssatSTIYNVLRcgakgngitdSTQAFAKAWAAACAsnesatiyvpkgryLLGSVAfrseckspsitflingtlvaptdyrvlgQANNWLSFEGVSHVSIIGGaldakgtsLWACktaagsncpngattlsitksnnirINGLLSLNSQMYHIVINRCQDVLVEGAKiiaagdspntdgihvqqSRNViiksssiktgddcisigpgtnnlwiervtcgpghgisigslakdldeegvqNVTVFKTVFTgttnglrikswarpsngfvrGIRFIDALMQNvqhpiiidqnycphnlncpgqisgvkisdviyqdirgtsatpiaikfdcstkypckgirlhnVHLRHLKQEAKSSCNNVIGEAlglvqpnscl
MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAagdspntdgihVQQSRNVIIKsssiktgddcisIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVftgttnglrikswarpsnGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEalglvqpnscl
MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDstqafakawaaacasnesaTIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQnvtvfktvftgttngLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL
***FFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGL*******
***FFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL
MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL
MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.974 0.982 0.580 1e-130
O22818405 Probable polygalacturonas no no 0.919 0.898 0.521 1e-104
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.901 0.813 0.425 5e-76
O23147431 Polygalacturonase ADPG1 O no no 0.941 0.865 0.418 7e-75
P35336467 Polygalacturonase OS=Acti N/A no 0.931 0.790 0.419 3e-72
Q39786407 Polygalacturonase OS=Goss N/A no 0.964 0.938 0.394 9e-71
Q39766407 Polygalacturonase OS=Goss N/A no 0.964 0.938 0.392 1e-70
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.893 0.938 0.398 2e-70
P48978460 Polygalacturonase OS=Malu N/A no 0.929 0.8 0.410 3e-70
P35339410 Exopolygalacturonase OS=Z N/A no 0.979 0.946 0.368 8e-70
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/393 (58%), Positives = 284/393 (72%), Gaps = 7/393 (1%)

Query: 4   FFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNES 63
           F  +L++ F++    N+ + S  T   YNV   GAK +G TDST+AF  AWA ACAS   
Sbjct: 8   FSLSLIFVFMI----NSAIASPLT---YNVASLGAKADGKTDSTKAFLSAWAKACASMNP 60

Query: 64  ATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSI 123
             IYVP G + L  V F   CK+ +ITF I GTLVAP+DYRV+G A NW+ F  V+ V+I
Sbjct: 61  GVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTI 120

Query: 124 IGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQD 183
            GG LD +GT+LWACK   G +CP+GATTL  + SNNI ++GL SLNSQM+HIVIN  Q+
Sbjct: 121 SGGILDGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQN 180

Query: 184 VLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGP 243
           V ++G ++  +G+SPNTDGIHVQ S  V I +S I TGDDC+SIGPGT+NLWIE V CGP
Sbjct: 181 VQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGP 240

Query: 244 GHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQN 303
           GHGISIGSL K+ +E GVQNVTV    F+GT NGLRIKSW RPS GF R I F  A M N
Sbjct: 241 GHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVN 300

Query: 304 VQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRL 363
           V++PI+IDQ+YCP N  CPGQ+SGV+ISDV Y+DI GTSAT +A+KFDCS K+PC+ I+L
Sbjct: 301 VENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKL 360

Query: 364 HNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL 396
            +V L +  Q A+SSC++  G   G+VQP SCL
Sbjct: 361 EDVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
224109162397 predicted protein [Populus trichocarpa] 0.977 0.974 0.714 1e-157
255566763387 Polygalacturonase precursor, putative [R 0.977 1.0 0.688 1e-154
255576398392 Polygalacturonase precursor, putative [R 0.972 0.982 0.614 1e-135
356577135399 PREDICTED: LOW QUALITY PROTEIN: polygala 0.982 0.974 0.605 1e-135
296083401390 unnamed protein product [Vitis vinifera] 0.926 0.941 0.662 1e-134
147858963376 hypothetical protein VITISV_033513 [Viti 0.931 0.981 0.641 1e-134
255576396393 Polygalacturonase precursor, putative [R 0.967 0.974 0.615 1e-133
356519796398 PREDICTED: polygalacturonase-like [Glyci 0.949 0.944 0.609 1e-132
255576394393 Polygalacturonase precursor, putative [R 0.982 0.989 0.593 1e-132
51507375398 polygalacturonase [Pyrus communis] 0.969 0.964 0.594 1e-132
>gi|224109162|ref|XP_002315106.1| predicted protein [Populus trichocarpa] gi|222864146|gb|EEF01277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 280/392 (71%), Positives = 319/392 (81%), Gaps = 5/392 (1%)

Query: 6   STLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESAT 65
           S L + FL+ L  NN+  SSA  TIYNV   GAK NG TDSTQAF  AWAAAC S +   
Sbjct: 10  SILFFIFLVSL--NNINISSA-ETIYNVQTYGAKPNGKTDSTQAFLDAWAAACGSTDPTI 66

Query: 66  IYVPKGRYLLGSVAFRS-ECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124
           IY+P+GRYLLGSVAF    CKSP IT  I+GTL+AP DYR+LG A+NWLSFE VS VSI+
Sbjct: 67  IYIPEGRYLLGSVAFTGGNCKSPDITVRIDGTLIAPEDYRILGLASNWLSFESVSGVSIV 126

Query: 125 GGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDV 184
           GGALDAKG+ LW CK+  GSNCP GATTLS   SNNI+INGLLSLNSQM+HIVIN CQ+V
Sbjct: 127 GGALDAKGSPLWDCKSK-GSNCPAGATTLSFVNSNNIKINGLLSLNSQMFHIVINGCQNV 185

Query: 185 LVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG 244
            V+G ++IAAGDSPNTDGIHVQ S +V+I +SSIKTGDDCISIGPGT NLWIERV CGPG
Sbjct: 186 QVQGVRVIAAGDSPNTDGIHVQLSTDVVIMNSSIKTGDDCISIGPGTKNLWIERVRCGPG 245

Query: 245 HGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304
           HGISIGSLAK +DE GVQNVTV  T+FTGTTNG RIKSWAR S GF + IRFI A M NV
Sbjct: 246 HGISIGSLAKTMDEAGVQNVTVKSTIFTGTTNGFRIKSWARHSTGFAQAIRFIGATMINV 305

Query: 305 QHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLH 364
           Q+PIIIDQNYCPHNLNCP ++SG++ISDVIYQ IRGTSATP+AIKFDCS KYPCKGI L 
Sbjct: 306 QNPIIIDQNYCPHNLNCPNEVSGIQISDVIYQGIRGTSATPVAIKFDCSFKYPCKGITLQ 365

Query: 365 NVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL 396
           NV+L +L +EA+S+C N IG+  G VQP++CL
Sbjct: 366 NVNLTYLNKEAQSTCTNAIGKISGQVQPDNCL 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566763|ref|XP_002524365.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223536326|gb|EEF37976.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255576398|ref|XP_002529091.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531442|gb|EEF33275.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356577135|ref|XP_003556683.1| PREDICTED: LOW QUALITY PROTEIN: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|296083401|emb|CBI23356.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858963|emb|CAN78679.1| hypothetical protein VITISV_033513 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576396|ref|XP_002529090.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531441|gb|EEF33274.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356519796|ref|XP_003528555.1| PREDICTED: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|255576394|ref|XP_002529089.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531440|gb|EEF33273.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|51507375|emb|CAH18935.1| polygalacturonase [Pyrus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.926 0.924 0.543 6.3e-108
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.972 0.992 0.520 8.1e-108
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.964 0.994 0.527 2.8e-105
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.974 0.984 0.473 1.6e-95
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.979 0.984 0.451 1e-93
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.936 0.941 0.454 8.1e-92
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.944 0.949 0.438 2.5e-88
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.982 0.960 0.455 1.8e-87
TAIR|locus:2077407439 QRT2 "QUARTET 2" [Arabidopsis 0.901 0.813 0.377 6.9e-63
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.901 0.828 0.396 3.8e-62
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 201/370 (54%), Positives = 256/370 (69%)

Query:    29 TIYNVLRCGAKGNGITDXXXXXXXXXXXXXXXXXXXTIYVPKGRYLL-GSVAFRSE-CKS 86
             T  NVL  GA  NGI +                    IYVPKGRYL+ G V F  E CKS
Sbjct:    29 TSLNVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVIYVPKGRYLVSGEVRFEGESCKS 88

Query:    87 PSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNC 146
               IT  I+GTL+ P DY +LG+  NW SF GV +V+++GG+ DAKG++LW+CK A G NC
Sbjct:    89 REITLRIDGTLIGPQDYSLLGKKENWFSFSGVHNVTVLGGSFDAKGSTLWSCK-ANGYNC 147

Query:   147 PNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQ 206
             P GATTL    SNN++I G+LSLNSQ++HI INRC+++ +E  +IIA  +SPNTDGIH+Q
Sbjct:   148 PEGATTLRFMDSNNVKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQ 207

Query:   207 QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQXXXX 266
              S ++ ++++SIKTGDDCISIGPGT NL ++ +TCGPGHGISIGSLAK ++E+GV+    
Sbjct:   208 LSTDIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLAKSIEEQGVENVTV 267

Query:   267 XXXXXXXXXXXLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQIS 326
                        LRIKSW R SNGFV  +RF+ A+M NV +PI+IDQNYCP + +CP Q S
Sbjct:   268 KNAVFVRTDNGLRIKSWPRHSNGFVERVRFLGAIMVNVSYPILIDQNYCPGDSSCPSQES 327

Query:   327 GVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEA 386
             G+KI+DVIY  I GTSAT IAIK DCS K PC GIR+  ++L    + AK+SC NV G+ 
Sbjct:   328 GIKINDVIYSGIMGTSATEIAIKMDCSEKVPCTGIRMQAINLTSYGEAAKTSCTNVSGKQ 387

Query:   387 LGLVQPNSCL 396
             LGLV P+ CL
Sbjct:   388 LGLVTPSGCL 397
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.58010.97470.9821N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X1589
hypothetical protein (397 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-139
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-102
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 3e-95
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 8e-91
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-83
PLN03010409 PLN03010, PLN03010, polygalacturonase 4e-79
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-73
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-25
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 3e-06
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  402 bits (1035), Expect = e-139
 Identities = 193/374 (51%), Positives = 263/374 (70%), Gaps = 3/374 (0%)

Query: 24  SSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSE 83
           SS+ S ++NV+  GAK +G+TDST AF KAW  AC S  SAT+ VP G +LL  + F   
Sbjct: 21  SSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGP 80

Query: 84  CKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAG 143
           CKS  ITF + GT+VAP DYR  G +  W+ F  V+  S++GG  DA+    W+C+ + G
Sbjct: 81  CKS-KITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKS-G 138

Query: 144 SNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGI 203
            NCP G  ++S   + ++ I+G+ S+NSQ+ H+ +N C +V+V   K++A G+SPNTDG 
Sbjct: 139 QNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF 198

Query: 204 HVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQN 263
           HVQ S  V    S+++TGDDC++IGPGT N  I ++ CGPGHG+SIGSLAK+L+E+GV+N
Sbjct: 199 HVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVEN 258

Query: 264 VTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPG 323
           VTV  +VFTG+ NG+RIKSWARPS GFVR + F D +M+NV++PIIIDQNYCP +  CP 
Sbjct: 259 VTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPN 318

Query: 324 QISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLK-QEAKSSCNNV 382
           + SGVKIS V Y++I+GTSAT  A+K  CS   PC GI L ++ L + K   A S C N 
Sbjct: 319 EYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNA 378

Query: 383 IGEALGLVQPNSCL 396
           +G++LG++QP SCL
Sbjct: 379 VGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.94
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.87
PLN02793443 Probable polygalacturonase 99.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.85
PLN02218431 polygalacturonase ADPG 99.83
PLN03003456 Probable polygalacturonase At3g15720 99.83
PLN03010409 polygalacturonase 99.83
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.82
PLN02155394 polygalacturonase 99.82
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.82
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.71
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.37
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.29
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.05
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.84
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.81
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.65
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.61
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.57
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.56
PLN02480343 Probable pectinesterase 98.52
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.52
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.5
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.49
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.43
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.41
smart00656190 Amb_all Amb_all domain. 98.41
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.41
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.34
PLN02176340 putative pectinesterase 98.32
PLN02665366 pectinesterase family protein 98.14
PLN02634359 probable pectinesterase 98.12
PLN02682369 pectinesterase family protein 98.11
PLN02773317 pectinesterase 98.1
PRK10531422 acyl-CoA thioesterase; Provisional 98.04
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.02
PLN02497331 probable pectinesterase 98.02
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.93
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.93
smart00656190 Amb_all Amb_all domain. 97.89
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.86
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.85
PLN02916502 pectinesterase family protein 97.79
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.79
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.77
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.73
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.73
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.67
PLN02304379 probable pectinesterase 97.66
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.65
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.61
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.6
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.59
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.57
PLN02432293 putative pectinesterase 97.56
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.56
PLN02671359 pectinesterase 97.55
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.53
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.52
PLN02301548 pectinesterase/pectinesterase inhibitor 97.52
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.5
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.47
PLN02197588 pectinesterase 97.41
PLN02314586 pectinesterase 97.4
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.06
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.91
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.76
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.6
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.62
PLN02773317 pectinesterase 95.47
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 94.3
PLN02480343 Probable pectinesterase 94.24
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 94.19
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.73
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.59
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.62
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 92.62
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.54
PLN02665366 pectinesterase family protein 92.46
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.21
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 91.89
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 91.5
PLN02201520 probable pectinesterase/pectinesterase inhibitor 91.46
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.07
PLN02301548 pectinesterase/pectinesterase inhibitor 91.02
PRK10531422 acyl-CoA thioesterase; Provisional 90.85
PLN02176340 putative pectinesterase 90.81
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 90.77
PLN02304379 probable pectinesterase 90.54
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 90.44
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 90.29
PLN02314586 pectinesterase 90.28
PLN02634359 probable pectinesterase 90.26
PLN02671359 pectinesterase 90.09
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 90.08
PLN02497331 probable pectinesterase 89.97
PLN02197588 pectinesterase 89.36
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 86.74
PLN02916502 pectinesterase family protein 85.41
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 84.45
PLN02506537 putative pectinesterase/pectinesterase inhibitor 84.22
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 83.83
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 83.37
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 82.65
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 82.27
PLN02682369 pectinesterase family protein 81.99
PLN02416541 probable pectinesterase/pectinesterase inhibitor 81.98
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 81.06
PLN02488509 probable pectinesterase/pectinesterase inhibitor 80.49
PLN02484587 probable pectinesterase/pectinesterase inhibitor 80.35
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=4.4e-78  Score=585.27  Aligned_cols=372  Identities=52%  Similarity=0.968  Sum_probs=339.9

Q ss_pred             cccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCC
Q 048431           23 HSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTD  102 (396)
Q Consensus        23 ~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~  102 (396)
                      ++...+++++|++|||++||.+|+|+|||+|+++||++.+|++|+||+|+|++++|.|+++||+ +++|+++|+|+++.+
T Consensus        20 ~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d   98 (394)
T PLN02155         20 VSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPED   98 (394)
T ss_pred             ccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECccc
Confidence            3445568999999999999999999999999987899889999999999999999999999999 999999999999888


Q ss_pred             ccccCCCcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeee
Q 048431          103 YRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQ  182 (396)
Q Consensus       103 ~~~~~~~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~  182 (396)
                      +..|.....|+.+.+.+|+.|.||+|||+|+.||.....+ .+.+.+|++++|.+|+|++|++++++|+|.|++++..|+
T Consensus        99 ~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~-~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~  177 (394)
T PLN02155         99 YRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSG-QNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCT  177 (394)
T ss_pred             cccccccceeEEEECcCCCEEEccEEecCceeEEEcccCC-CCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECee
Confidence            8877655679999999999999999999999999864332 344557889999999999999999999999999999999


Q ss_pred             cEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCEE
Q 048431          183 DVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQ  262 (396)
Q Consensus       183 nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~  262 (396)
                      |++|++++|.++.+++|+||||+.+|+||+|+||+|+++||||+++++++||+|+||.|..+||++|||+|++...++++
T Consensus       178 nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~  257 (394)
T PLN02155        178 NVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVE  257 (394)
T ss_pred             eEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEE
Confidence            99999999999988899999999999999999999999999999999999999999999999999999998876578899


Q ss_pred             EEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEee
Q 048431          263 NVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTS  342 (396)
Q Consensus       263 ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~  342 (396)
                      ||+|+||+|.++.+|++||+|.+.++|.++||+|+||+|+++++||.|++.|+.....|+.+.+.+.|+||+|+||+++.
T Consensus       258 nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~  337 (394)
T PLN02155        258 NVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTS  337 (394)
T ss_pred             EEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEe
Confidence            99999999999999999999865478999999999999999999999999997654456555566899999999999998


Q ss_pred             CCCeeEEEeeCCCCceecEEEEeEEEEecCC-cccceeeeceecccceecCCCCC
Q 048431          343 ATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQ-EAKSSCNNVIGEALGLVQPNSCL  396 (396)
Q Consensus       343 ~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~~-~~~~~c~~~~~~~~~~~~~~~~~  396 (396)
                      ....++.+.|++..||+||+|+||++...++ +.+++|.||+|...+++.|.+|+
T Consensus       338 ~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        338 ATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             cCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence            8666899999999999999999999998864 45899999999999988999996

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 8e-14
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 3e-11
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 6e-08
1nhc_A336 Structural Insights Into The Processivity Of Endopo 1e-07
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-07
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 5e-07
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 6e-07
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 5e-06
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 3e-04
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 20/222 (9%)
Query: 153 LSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVI 212
           + I KS N  +  +  +NS  +H+V +           I     + NTDGI    S+N+ 
Sbjct: 154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNIT 213
Query: 213 IKSSSIKTGDDCISIG-----PGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQXXXXX 267
           I  S+I TGDD ++I        T N+ I     G GHG+SIGS     +  GV      
Sbjct: 214 IAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVD 268
Query: 268 XXXXXXXXXXLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNY-CPHNLNCPGQIS 326
                     LRIKS  + + G V G+R+ + +M+NV  PI+ID  Y      N P    
Sbjct: 269 DLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW-- 325
Query: 327 GVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHL 368
               SD+ ++D+   +   + +  + + K P + + + NV L
Sbjct: 326 ----SDITFKDVTSETKGVVVLNGE-NAKKPIE-VTMKNVKL 361
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-114
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-106
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-103
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 8e-94
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-93
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-92
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 5e-90
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-87
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-84
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 5e-32
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-31
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 9e-28
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-22
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 1e-16
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-12
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 3e-10
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 6e-08
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 2e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  339 bits (871), Expect = e-114
 Identities = 76/381 (19%), Positives = 138/381 (36%), Gaps = 31/381 (8%)

Query: 22  LHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGS-VAF 80
             +   +   N+L  GA  +  TD   A   AWAA C S     +Y+P G Y L + V  
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAWAA-CKSG--GLVYIPSGNYALNTWVTL 68

Query: 81  RSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIG-GALDAKGTSLWACK 139
                       ++G +         G              S    GA+   G       
Sbjct: 69  TGGSA---TAIQLDGIIYRTGTAS--GNMIAVTDTTDFELFSSTSKGAVQGFGYVYH--- 120

Query: 140 TAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPN 199
               +    GA  L +T   +  ++ ++ +++  +H  ++ C D  V    I   G+   
Sbjct: 121 ----AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGG 175

Query: 200 TDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEE 259
            DGI V  S N+ +    +   D+C+++    NN+ +E + C    G ++GSL  D    
Sbjct: 176 LDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---T 231

Query: 260 GVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNL 319
            V ++         +     IKS     +G V  +   + +     + + ID  +     
Sbjct: 232 DVTDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTA 289

Query: 320 NCPGQISGVKISDVIYQDIRGTS---ATPIAIKFDCSTKYPCKGIRLHNVHLRHL-KQEA 375
                  GV+++++  ++ +GT    AT   I+  CS   PC  + L ++ +        
Sbjct: 290 VAG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSE 346

Query: 376 KSSCNNVIGEALGLVQPNSCL 396
              C +  G    L   +S  
Sbjct: 347 LYLCRSAYGSGYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.9
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.88
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.83
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.83
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.78
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.77
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.61
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.5
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.49
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.43
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.38
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.35
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.35
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.29
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.17
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.88
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.84
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.67
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.66
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.63
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.61
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.57
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.52
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.51
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.5
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.41
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.35
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.34
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.32
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.31
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.29
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.28
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.11
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.01
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.97
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.83
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.75
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.59
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.58
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.55
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.55
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.51
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.43
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.08
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.53
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.49
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.39
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.25
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.13
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.86
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.56
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.47
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.19
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.8
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.64
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 91.34
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 86.89
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=6.2e-64  Score=497.69  Aligned_cols=338  Identities=23%  Similarity=0.384  Sum_probs=297.9

Q ss_pred             cccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCC
Q 048431           23 HSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTD  102 (396)
Q Consensus        23 ~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~  102 (396)
                      .+..++..++|++|||++||.+|||+|||+||+ +|++.++++|+||+|+|++++|.|++     +++|+++|+|+++.+
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G~yl~~~l~l~s-----~v~l~l~gtL~~s~d   93 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEGVFLTGPIHLKS-----NIELHVKGTIKFIPD   93 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSSEEEESCEECCT-----TEEEEESSEEEECCC
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCCcEEEeeeEeCC-----CcEEEEEEEEEecCC
Confidence            334467899999999999999999999999996 56767899999999999999999986     999999999999999


Q ss_pred             cccc-CCC------------cceEEEeceeeEEEEc-eEEeCCC--CCcccccccC------------------------
Q 048431          103 YRVL-GQA------------NNWLSFEGVSHVSIIG-GALDAKG--TSLWACKTAA------------------------  142 (396)
Q Consensus       103 ~~~~-~~~------------~~~i~~~~~~nv~I~G-g~idg~g--~~~w~~~~~~------------------------  142 (396)
                      .++| +..            .+||.+.+++||+|.| |+|||+|  +.||+.....                        
T Consensus        94 ~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (448)
T 3jur_A           94 PERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAER  173 (448)
T ss_dssp             GGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcc
Confidence            9988 321            3589999999999999 9999999  8899743210                        


Q ss_pred             ---------CCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEE
Q 048431          143 ---------GSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVII  213 (396)
Q Consensus       143 ---------~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I  213 (396)
                               +.....||++|.|.+|+|++|++++++|+|.|++++..|+|++|+|++|.++  ++|+|||++.+|+||+|
T Consensus       174 ~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I  251 (448)
T 3jur_A          174 GTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLI  251 (448)
T ss_dssp             TCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEE
T ss_pred             cCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEE
Confidence                     0123578999999999999999999999999999999999999999999986  58999999999999999


Q ss_pred             EecEEecCCceEEeCCC-----------CccEEEEeeeE--eCCc-eEEEeeccccCCCCCEEEEEEEeeEEeCCccEEE
Q 048431          214 KSSSIKTGDDCISIGPG-----------TNNLWIERVTC--GPGH-GISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLR  279 (396)
Q Consensus       214 ~n~~i~~~dD~i~i~~~-----------~~ni~i~n~~~--~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~  279 (396)
                      +||+|+++||||+++++           ++||+|+||+|  ..+| |++|||+    ..++++||+|+||+|.++.+|++
T Consensus       252 ~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t~~Gir  327 (448)
T 3jur_A          252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNVERALR  327 (448)
T ss_dssp             ESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESCSEEEE
T ss_pred             EeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecccceEE
Confidence            99999999999999997           79999999999  6677 7999998    35789999999999999999999


Q ss_pred             EEeecCCCCceEEcEEEEeeEeecCCccE-EEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeeCCCeeEEEeeCCCCce
Q 048431          280 IKSWARPSNGFVRGIRFIDALMQNVQHPI-IIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPC  358 (396)
Q Consensus       280 i~~~~~~~~g~v~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~  358 (396)
                      ||++.+ ++|.++||+|+|++|+++.+++ .|++.|....     ....+.++||+|+||+++. ...++.+.|.+..||
T Consensus       328 IKt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~  400 (448)
T 3jur_A          328 LKTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYV  400 (448)
T ss_dssp             EECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCE
T ss_pred             EEEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCE
Confidence            999977 7799999999999999999988 8999887531     1234689999999999998 446999999999999


Q ss_pred             ecEEEEeEEEEecCCcccceeee
Q 048431          359 KGIRLHNVHLRHLKQEAKSSCNN  381 (396)
Q Consensus       359 ~ni~~~ni~v~~~~~~~~~~c~~  381 (396)
                      +||+|+||++....  ....|.+
T Consensus       401 ~~I~~~nv~i~~~~--~~~~~~~  421 (448)
T 3jur_A          401 KDILISDTIIEGAK--ISVLLEF  421 (448)
T ss_dssp             EEEEEEEEEEESCS--EEEEEEE
T ss_pred             eeEEEEEEEEEccc--cceeEec
Confidence            99999999998543  2345555
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 8e-79
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-76
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-71
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-63
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-57
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-57
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-55
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-51
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  246 bits (630), Expect = 8e-79
 Identities = 75/381 (19%), Positives = 142/381 (37%), Gaps = 37/381 (9%)

Query: 24  SSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGS-VAFRS 82
           +   +   N+L  GA  +  TD   A   AW AAC S     +Y+P G Y L + V    
Sbjct: 14  TKGATKTCNILSYGAVADNSTDVGPAITSAW-AACKS--GGLVYIPSGNYALNTWVTLTG 70

Query: 83  ECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII----GGALDAKGTSLWAC 138
                     ++G +           + N ++    +   +      GA+   G      
Sbjct: 71  GSA---TAIQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYH-- 120

Query: 139 KTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSP 198
                +    GA  L +T   +  ++ ++ +++  +H  ++ C D  V    I   G+  
Sbjct: 121 -----AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIR-GGNEG 174

Query: 199 NTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258
             DGI V  S N+ +    +   D+C+++    NN+ +E + C    G ++GSL  D   
Sbjct: 175 GLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD--- 230

Query: 259 EGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHN 318
             V ++         +     IKS     +G V  +   + +     + + ID  +    
Sbjct: 231 TDVTDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMT 288

Query: 319 LNCPGQISGVKISDVIYQDIRGTS---ATPIAIKFDCSTKYPCKGIRLHNVHLRHLK-QE 374
                   GV+++++  ++ +GT    AT   I+  CS   PC  + L ++ +       
Sbjct: 289 AVAG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSS 345

Query: 375 AKSSCNNVIGEALGLVQPNSC 395
               C +  G    L   +S 
Sbjct: 346 ELYLCRSAYGSGYCLKDSSSH 366
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.84
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.84
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.83
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.81
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.79
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.74
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.68
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.61
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.59
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.68
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.62
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.46
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.37
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.93
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.91
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.79
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.76
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.75
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.61
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.56
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.37
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.25
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.23
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.05
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.01
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.8
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.55
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.04
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.51
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 93.15
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 81.98
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=3.2e-60  Score=466.97  Aligned_cols=339  Identities=21%  Similarity=0.361  Sum_probs=290.8

Q ss_pred             ccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEe-ceeecccCCCCcEEEEEeeEEEeeCC
Q 048431           24 SSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLG-SVAFRSECKSPSITFLINGTLVAPTD  102 (396)
Q Consensus        24 ~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~-~l~l~~~~~~~n~~l~~~G~l~~~~~  102 (396)
                      ..++.+++||+||||++||++|||+|||+||+ ||+  +|++|+||+|+|++. ++.|+++  + ++.|+++|+|++..+
T Consensus        14 ~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~-~~~l~~~G~i~~~~~   87 (422)
T d1rmga_          14 TKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--S-ATAIQLDGIIYRTGT   87 (422)
T ss_dssp             HHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--E-EEEEEECSEEEECCC
T ss_pred             ccCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--C-ceEEEEeEEEEeccC
Confidence            34457899999999999999999999999995 674  588999999999765 5888764  2 788999999988765


Q ss_pred             ccccCCCcceEEEeceeeEEEEc-eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeee
Q 048431          103 YRVLGQANNWLSFEGVSHVSIIG-GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRC  181 (396)
Q Consensus       103 ~~~~~~~~~~i~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~  181 (396)
                      ...+.  ..+....+.+.+.+.| |+|||+|+.||...       ..+|.+++|.+|+|++|++++++|++.|++.+..|
T Consensus        88 ~~~~~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~-------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c  158 (422)
T d1rmga_          88 ASGNM--IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG-------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTC  158 (422)
T ss_dssp             CSSEE--EEEEEEEEEEEECSSSCCEEECCTHHHHTTT-------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEE
T ss_pred             CccCE--EEeccCccEEEEEeecceEEecCcceecCCC-------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEecc
Confidence            54332  1233334455566677 99999999999543       35799999999999999999999999999999999


Q ss_pred             ecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCE
Q 048431          182 QDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGV  261 (396)
Q Consensus       182 ~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~  261 (396)
                      ++++|+|++|.++. .+|+|||++.+ +||+|+||+|.++|||++++++++||+|+|++|..+||++|||++.+   ..+
T Consensus       159 ~~v~i~nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~~---~~V  233 (422)
T d1rmga_         159 SDGEVYNMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDV  233 (422)
T ss_dssp             EEEEEEEEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECTT---EEE
T ss_pred             ccEEEEeeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccCC---CCE
Confidence            99999999999864 57999999976 58999999999999999999999999999999999999999998643   469


Q ss_pred             EEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEe
Q 048431          262 QNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGT  341 (396)
Q Consensus       262 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~  341 (396)
                      +||+|+||++.++.+++++|++.  +.|.|+||+|+|++|+++.+|+.|++.|+....   .....+.|+||+|+||+++
T Consensus       234 ~nV~v~n~~~~~s~~g~~ik~~~--g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~---~~~~~v~isnIt~~Ni~GT  308 (422)
T d1rmga_         234 TDIVYRNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTA---VAGDGVQLNNITVKNWKGT  308 (422)
T ss_dssp             EEEEEEEEEEESSSCSEEEEEBB--CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCC---BSSSCCEEEEEEEEEEEEE
T ss_pred             EEEEEEeEEEeCCCceEEEEEcC--CCceecceEEEEEEEecccccEEEecccCCCCC---CCCCCeEEEEEEEEeEEEE
Confidence            99999999999999999999874  568999999999999999999999999886433   2234568999999999998


Q ss_pred             eC---CCeeEEEeeCCCCceecEEEEeEEEEecCC-cccceeeeceeccc
Q 048431          342 SA---TPIAIKFDCSTKYPCKGIRLHNVHLRHLKQ-EAKSSCNNVIGEAL  387 (396)
Q Consensus       342 ~~---~~~~~~i~~~~~~~~~ni~~~ni~v~~~~~-~~~~~c~~~~~~~~  387 (396)
                      ..   .+.++.+.|++..||+||+|+||+|..+++ .+.++|.||+|...
T Consensus       309 ~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~  358 (422)
T d1rmga_         309 EANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY  358 (422)
T ss_dssp             ESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEEST
T ss_pred             ecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEE
Confidence            64   356899999999999999999999998874 56689999999764
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure