Citrus Sinensis ID: 048443
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.851 | 0.488 | 0.325 | 1e-56 | |
| Q9M0G7 | 1013 | Leucine-rich repeat recep | no | no | 0.833 | 0.399 | 0.312 | 2e-36 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.860 | 0.428 | 0.291 | 8e-34 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.823 | 0.352 | 0.292 | 2e-33 | |
| Q9SHI3 | 729 | Receptor-like protein 2 O | no | no | 0.759 | 0.506 | 0.308 | 4e-33 | |
| Q9C7S5 | 1095 | Tyrosine-sulfated glycope | no | no | 0.777 | 0.345 | 0.282 | 5e-32 | |
| Q9FII5 | 1041 | Leucine-rich repeat recep | no | no | 0.722 | 0.337 | 0.308 | 1e-31 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.732 | 0.284 | 0.319 | 2e-31 | |
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.890 | 0.358 | 0.294 | 1e-29 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.711 | 0.294 | 0.296 | 1e-29 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 161/494 (32%), Positives = 230/494 (46%), Gaps = 80/494 (16%)
Query: 38 GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPK--WLLN 95
G IP S+ L L+ LD++ NNF +P +I L +L LD + G +P W LN
Sbjct: 365 GPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLD-LSKNNLEGEVPACLWRLN 423
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLY 155
+ LS N F F+ + I ++ N+ G IP IC LSSL
Sbjct: 424 TMV-------LSHNSFSSFENT------SQEEALIEELDLNSNSFQGPIPYMICKLSSLG 470
Query: 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215
LDLS+N SG + C+ NFSG + L+L NF GT PD F ++L +D+SHN L+G
Sbjct: 471 FLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEG 530
Query: 216 KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL-----------------IQ 258
K PKSL NC LE+ ++ +N+I D FP WL SL L++L L Q
Sbjct: 531 KFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQ 590
Query: 259 QLPC-------FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYS 311
L F G LP YF W M +YM +F+RY +
Sbjct: 591 SLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMT---------EFWRYADSYYHE 641
Query: 312 ITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSC 371
+ M N+G M+ ++I + I S N+ +G +P S+ LK L+VL L+ N IP
Sbjct: 642 MEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRF 701
Query: 372 LGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFN 420
L +LT LE+LD+S+N+ L+FL + N +HN L GP+P+ QF SSF
Sbjct: 702 LANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFL 761
Query: 421 GNSRLCG--------------KPLPKECAS------DWKIVLTGYTGRIVVGLVFGFNFS 460
N L G LP++ + +W Y ++ GLV G ++
Sbjct: 762 DNPGLYGLEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHFYT 821
Query: 461 TGIVRWFPKKLGMQ 474
+ WF +K G +
Sbjct: 822 SHNHEWFTEKFGRK 835
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/438 (31%), Positives = 205/438 (46%), Gaps = 33/438 (7%)
Query: 35 DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLL 94
+F G IPP GN+N L++LDLA E+P+ +G L SLE L + G IP+ +
Sbjct: 223 EFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYEN-NFTGTIPREI- 280
Query: 95 NPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSL 154
S+ L+ S N + P + T ++ + +N L+G IP I +L+ L
Sbjct: 281 -GSITTLKVLDFSDNALT--GEIPMEI---TKLKNLQLLNLMRNKLSGSIPPAISSLAQL 334
Query: 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
VL+L +N LSGEL LG S L L + +F G P T N +L + L +N
Sbjct: 335 QVLELWNNTLSGELPSDLGKNS-PLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFT 393
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQC 274
G+IP +L+ C L ++NN +N + PI G L +L L L G +P
Sbjct: 394 GQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNR--LSGGIPGDISDS 451
Query: 275 WNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGII 334
++ F + S+ + + S+ S + F D I+ G++ + L +
Sbjct: 452 V-SLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFIS----GEVPDQFQDCPSLSNLD 506
Query: 335 LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT----- 389
LSSN G +P+SIA+ + L L L +NNL G IP + +++ L LDLS N LT
Sbjct: 507 LSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPE 566
Query: 390 ------FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECASDWKIVLT 443
LE N ++N LTGP+P T GNS LCG LP S ++ +
Sbjct: 567 SIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPP--CSKFQRATS 624
Query: 444 GYTG----RIVVGLVFGF 457
++ RIV G + G
Sbjct: 625 SHSSLHGKRIVAGWLIGI 642
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Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 145/497 (29%), Positives = 209/497 (42%), Gaps = 79/497 (15%)
Query: 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPK 91
R + SGQIP +G+ + LQ LDL+FN ++P SI L LE+L ++ G IP
Sbjct: 100 RGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQL-ILKNNQLIGPIPS 158
Query: 92 WLLNPSMKNFSYLNLSKNYF----PRFDQHPTVLPWTTLS---------------TKIRH 132
L + N L+L++N PR VL + L T + +
Sbjct: 159 TL--SQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWY 216
Query: 133 YLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192
+ + N+LTG IP I N ++ VLDLS N L+GE+ +G ++ LSLQG G
Sbjct: 217 FDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQ--VATLSLQGNQLSGK 274
Query: 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSL---- 248
P L ++DLS NLL G IP L N E L +N++ + P LG++
Sbjct: 275 IPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLH 334
Query: 249 -LELNILVLIQQLPCFMGKL-----------------PSKYFQCWN-------AMKFANS 283
LELN L +P +GKL P C N KF+ +
Sbjct: 335 YLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGT 394
Query: 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGII--------- 334
+ + L S + + + +S G + T D + + GII
Sbjct: 395 IPRAFQK--LESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEH 452
Query: 335 -----LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
LS N G +P NL+ + + L++N++ G IP L L N+ L L N LT
Sbjct: 453 LLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLT 512
Query: 390 ----------FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECASDWK 439
L N +HNNL G IP+ N F F SF GN LCG L C +
Sbjct: 513 GNVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGSWLNSPCHDSRR 572
Query: 440 IVLTGYTGRIVVGLVFG 456
V + ++G+ G
Sbjct: 573 TVRVSISRAAILGIAIG 589
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Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 146/499 (29%), Positives = 214/499 (42%), Gaps = 99/499 (19%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN 95
FSG+IPP +GNL +L+ L LA N+ E+P I SL+ LD F + G IP++L
Sbjct: 344 FSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLD-FEGNSLKGQIPEFL-- 400
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLY 155
MK L+L +N F +G +PS + NL L
Sbjct: 401 GYMKALKVLSLGRNSF-----------------------------SGYVPSSMVNLQQLE 431
Query: 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215
L+L +NNL+G L + LS L L G F G P + N S+L ++LS N G
Sbjct: 432 RLNLGENNLNGSFPVELMALTS-LSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSG 490
Query: 216 KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCW 275
+IP S+ N L DL ++ P+ L L + ++ L Q F G +P
Sbjct: 491 EIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIAL--QGNNFSGVVPEG----- 543
Query: 276 NAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDI-----L 330
F++ LRY+ N S+ FS + + F +++S ++ P+I L
Sbjct: 544 ----FSSLVSLRYV-NLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSAL 598
Query: 331 KGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP--------------------- 369
+ + L SNR G +P ++ L L+VL L NNL G IP
Sbjct: 599 EVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSG 658
Query: 370 ---SCLGSLTNLESLDLSKNRLTF------------LEFFNATHNNLTGPIPQANQFPTF 414
L+NL +DLS N LT L +FN + NNL G IP +
Sbjct: 659 VIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN 718
Query: 415 GYSSFNGNSRLCGKPLPKECASDWK-----------IVLTGYTGRIVVGLVFGFNFSTGI 463
S F+GN+ LCGKPL + C S +++ G ++ L F T +
Sbjct: 719 NTSEFSGNTELCGKPLNRRCESSTAEGKKKKRKMILMIVMAAIGAFLLSLFCCFYVYT-L 777
Query: 464 VRWFPKKLGMQLKTRKRIR 482
++W KKL Q T ++ R
Sbjct: 778 LKWR-KKLKQQSTTGEKKR 795
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 203/444 (45%), Gaps = 75/444 (16%)
Query: 27 LDRLQRLSDFS-------GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79
+ RL++L+ + G+IP +GNL+ L+ L L NN +P S+ + + L +L+
Sbjct: 289 ITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLN- 347
Query: 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTK-IRHYLISKN 138
++ G + + + +++ L+L N F LP S K + + N
Sbjct: 348 LRVNQLGGGLTELEFS-QLQSLKVLDLGNNSFT------GALPDKIFSCKSLTAIRFAGN 400
Query: 139 NLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLS--------LQGKNFF 190
LTGEI + L SL + LSDN L+ N +G LS+L + KNF+
Sbjct: 401 KLTGEISPQVLELESLSFMGLSDNKLT--------NITGALSILQGCRKLSTLILAKNFY 452
Query: 191 GTT---------PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241
T PD F LR+ + L+G+IP L N +E+ DL N+ +
Sbjct: 453 DETVPSKEDFLSPDGF---PKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSI 509
Query: 242 PIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDF 301
P WLG+L +L L L L G+LP + FQ M SQ + EN +Y
Sbjct: 510 PGWLGTLPDLFYLDLSDNL--LTGELPKELFQLRALM-----SQ-KITEN---NYLELPI 558
Query: 302 YRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLAS 361
+ N ++T + + ++K+ I + N G +P + LK L +L L
Sbjct: 559 FL----NPNNVTTNQQ-----YNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLG 609
Query: 362 NNLQGHIPSCLGSLTNLESLDLSKNRLT-----------FLEFFNATHNNLTGPIPQANQ 410
NNL G IP L +LTNLE LDLS N L+ FL +FN +N+L GPIP Q
Sbjct: 610 NNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQ 669
Query: 411 FPTFGYSSFNGNSRLCGKPLPKEC 434
F TF ++F GN LCG L C
Sbjct: 670 FDTFPKANFEGNPLLCGGVLLTSC 693
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 205/457 (44%), Gaps = 79/457 (17%)
Query: 7 SELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPA 66
+ LT+LT+L Y + G+IP +G L++L L L NN + +P
Sbjct: 292 TRLTKLTLLELYS--------------NHIEGEIPKDIGKLSKLSSLQLHVNNLMGSIPV 337
Query: 67 SIGSLSSLERLDTFPPMKIH--GNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT 124
S+ + + L +L+ ++++ G + ++ S L+L N F + P+ +
Sbjct: 338 SLANCTKLVKLN----LRVNQLGGTLSAIDFSRFQSLSILDLGNNSFT--GEFPSTVYSC 391
Query: 125 TLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLS- 183
+ T +R + N LTG+I + L SL SDN ++ N +G LS+L
Sbjct: 392 KMMTAMR---FAGNKLTGQISPQVLELESLSFFTFSDNKMT--------NLTGALSILQG 440
Query: 184 -------LQGKNFFGTTPDT---FMNGS---DLRMVDLSHNLLQGKIPKSLANCAVLEIS 230
+ KNF+ T + F+ L++ + L G+IP L +E+
Sbjct: 441 CKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGACRLTGEIPAWLIKLQRVEVM 500
Query: 231 DLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAM--KFANSSQLRY 288
DL N+ T P WLG+L +L L L G+LP + FQ M K ++++ Y
Sbjct: 501 DLSMNRFVGTIPGWLGTLPDLFYLDLSDNF--LTGELPKELFQLRALMSQKAYDATERNY 558
Query: 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSI 348
+E L + N ++T + + ++++ + I + N G +P +
Sbjct: 559 LE--LPVFV----------NPNNVTTNQQ-----YNQLSSLPPTIYIKRNNLTGTIPVEV 601
Query: 349 ANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT-----------FLEFFNAT 397
LK L +L L NN G IP L +LTNLE LDLS N L+ FL +FN
Sbjct: 602 GQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVA 661
Query: 398 HNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKEC 434
+N L+GPIP QF TF ++F GN LCG L C
Sbjct: 662 NNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSC 698
|
Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 197/422 (46%), Gaps = 71/422 (16%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN 95
SG +P LGNL+ L+ L L N F E+P S +L SL+ LD F ++ G+IP
Sbjct: 261 LSGSLPQELGNLSNLETLFLFQNGFTGEIPESYSNLKSLKLLD-FSSNQLSGSIPSGF-- 317
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLY 155
++KN ++L+L N NL+GE+P I L L
Sbjct: 318 STLKNLTWLSLISN-----------------------------NLSGEVPEGIGELPELT 348
Query: 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215
L L +NN +G L LG+ +G L + + +F GT P + +G+ L + L N+ +G
Sbjct: 349 TLFLWNNNFTGVLPHKLGS-NGKLETMDVSNNSFTGTIPSSLCHGNKLYKLILFSNMFEG 407
Query: 216 KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCW 275
++PKSL C L +NN++N T PI GSL L + L F ++P+
Sbjct: 408 ELPKSLTRCESLWRFRSQNNRLNGTIPIGFGSLRNLTFVDLSNNR--FTDQIPA------ 459
Query: 276 NAMKFANSSQLRYMENFLSSYFSFDFYRYFPQN--------DYSITMSN-EGQMMTHDKI 326
FA + L+Y+ LS+ F F+R P+N +S + SN G++ +
Sbjct: 460 ---DFATAPVLQYLN--LSTNF---FHRKLPENIWKAPNLQIFSASFSNLIGEIPNYVGC 511
Query: 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386
+ I L N +G +P I + + L L L+ N+L G IP + +L ++ +DLS N
Sbjct: 512 KSFYR-IELQGNSLNGTIPWDIGHCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDLSHN 570
Query: 387 RLT-----------FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECA 435
LT + FN ++N L GPIP + F S F+ N LCG + K C
Sbjct: 571 LLTGTIPSDFGSSKTITTFNVSYNQLIGPIPSGS-FAHLNPSFFSSNEGLCGDLVGKPCN 629
Query: 436 SD 437
SD
Sbjct: 630 SD 631
|
Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 190/422 (45%), Gaps = 66/422 (15%)
Query: 27 LDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKI 85
L RL R ++ G IP SLGN +Q+ +DLA N +P+S G L++LE + +
Sbjct: 483 LTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNN-SL 541
Query: 86 HGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP 145
GN+P L+N +KN + +N S N F G I
Sbjct: 542 QGNLPDSLIN--LKNLTRINFSSNKF-----------------------------NGSI- 569
Query: 146 SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205
S +C SS D+++N G++ LG S L L L F G P TF S+L +
Sbjct: 570 SPLCGSSSYLSFDVTENGFEGDIPLELGK-STNLDRLRLGKNQFTGRIPRTFGKISELSL 628
Query: 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMG 265
+D+S N L G IP L C L DL NN ++ P WLG L L L L F+G
Sbjct: 629 LDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSN--KFVG 686
Query: 266 KLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQM----- 320
LP++ F N + L N L+ + N ++ E Q+
Sbjct: 687 SLPTEIFSLTNILT------LFLDGNSLNGSIPQEIGNLQALNALNL---EENQLSGPLP 737
Query: 321 MTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQ-VLGLASNNLQGHIPSCLGSLTNLE 379
T K+ + + + LS N GE+P I L+ LQ L L+ NN G IPS + +L LE
Sbjct: 738 STIGKLSKLFE-LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLE 796
Query: 380 SLDLSKNRLT-----------FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGK 428
SLDLS N+L L + N ++NNL G + + QF + +F GN+ LCG
Sbjct: 797 SLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGS 854
Query: 429 PL 430
PL
Sbjct: 855 PL 856
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 160/544 (29%), Positives = 221/544 (40%), Gaps = 111/544 (20%)
Query: 32 RLSDFSGQIPPSLGNL-NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIP 90
R +DF G P L +L + LDL++NNF +P S+G SSLE +D G +P
Sbjct: 311 RGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVD-ISYNNFSGKLP 369
Query: 91 KWLLNPSMKNFSYLNLSKNYFPRF--DQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWI 148
L+ + N + LS N F D +L TL +S NNLTG IPS I
Sbjct: 370 VDTLS-KLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLD-------MSSNNLTGVIPSGI 421
Query: 149 C--------------------------NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182
C N S L LDLS N L+G + LG+ S L L
Sbjct: 422 CKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSK-LKDL 480
Query: 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP 242
L G P M L + L N L G IP SL+NC L L NNQ++ P
Sbjct: 481 ILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIP 540
Query: 243 IWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAM------KFANSS----QLRYMENF 292
LG L L IL L G +P++ C + + F N S + N
Sbjct: 541 ASLGRLSNLAILKLGNN--SISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNI 598
Query: 293 LSSYFSFDFYRYFPQNDYSITMSNEGQMMTH--------DKIPD--------ILKGII-- 334
+ + Y Y +ND S G ++ D+I + +GI
Sbjct: 599 AVALLTGKRYVYI-KNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQP 657
Query: 335 ------------LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382
LS N+ +G +P + + L +L L N+L G IP LG L N+ LD
Sbjct: 658 TFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILD 717
Query: 383 LSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLP 431
LS NR LT L + ++NNL+G IP++ F TF F NS LCG PLP
Sbjct: 718 LSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNS-LCGYPLP 776
Query: 432 KECASDWKIVLTGY----------TGRIVVGLVFGFNFSTGIVRWFPKKLGMQLKTRKRI 481
C+S K + G + +GL+F G++ + ++T+KR
Sbjct: 777 IPCSSGPKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFGLII-------VAIETKKRR 829
Query: 482 RRHR 485
R+
Sbjct: 830 RKKE 833
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 181/402 (45%), Gaps = 56/402 (13%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN 95
G + P++ NL LQ LDL N+F ++PA IG L+ L +L + G+IP +
Sbjct: 84 LEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNY-FSGSIPSGIW- 141
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLY 155
+KN YL+L N D + ++L Y NNLTG+IP + +L L
Sbjct: 142 -ELKNIFYLDLRNNLLSG-DVPEEICKTSSLVLIGFDY----NNLTGKIPECLGDLVHLQ 195
Query: 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215
+ + N+L+G + +G + L+ L L G G P F N +L+ + L+ NLL+G
Sbjct: 196 MFVAAGNHLTGSIPVSIGTLA-NLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEG 254
Query: 216 KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCW 275
IP + NC+ L +L +NQ+ P LG+L++L L + + +PS F
Sbjct: 255 DIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKN--KLTSSIPSSLF--- 309
Query: 276 NAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIIL 335
+ + L EN L S + + L+ + L
Sbjct: 310 ---RLTQLTHLGLSENHLVGPISEEI-----------------------GFLESLEVLTL 343
Query: 336 SSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL------- 388
SN F GE P SI NL+ L VL + NN+ G +P+ LG LTNL +L N L
Sbjct: 344 HSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSS 403
Query: 389 ----TFLEFFNATHNNLTGPIPQAN-----QFPTFGYSSFNG 421
T L+ + +HN +TG IP+ F + G + F G
Sbjct: 404 ISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTG 445
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| 147794486 | 1924 | hypothetical protein VITISV_000631 [Viti | 0.874 | 0.220 | 0.409 | 3e-91 | |
| 147782974 | 1719 | hypothetical protein VITISV_036826 [Viti | 0.812 | 0.229 | 0.411 | 5e-89 | |
| 359490156 | 886 | PREDICTED: receptor-like protein 12-like | 0.948 | 0.520 | 0.394 | 5e-89 | |
| 359485824 | 973 | PREDICTED: receptor-like protein 12-like | 0.868 | 0.433 | 0.412 | 3e-88 | |
| 225447578 | 1946 | PREDICTED: uncharacterized protein LOC10 | 0.882 | 0.220 | 0.406 | 4e-88 | |
| 147766212 | 925 | hypothetical protein VITISV_018438 [Viti | 0.765 | 0.402 | 0.434 | 6e-86 | |
| 224140511 | 894 | predicted protein [Populus trichocarpa] | 0.853 | 0.464 | 0.407 | 2e-83 | |
| 224140517 | 979 | predicted protein [Populus trichocarpa] | 0.872 | 0.433 | 0.400 | 3e-83 | |
| 224140509 | 961 | predicted protein [Populus trichocarpa] | 0.886 | 0.448 | 0.385 | 2e-81 | |
| 255548700 | 932 | serine-threonine protein kinase, plant-t | 0.878 | 0.458 | 0.389 | 1e-80 |
| >gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 206/503 (40%), Positives = 271/503 (53%), Gaps = 78/503 (15%)
Query: 45 GNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYL 104
G+L +L+ L LA N L E P + + L+ L T KIHG IPKW+ N + +
Sbjct: 1419 GSLPRLRLLGLASCN-LSEFPHFLRNQDELKFL-TLSDNKIHGQIPKWMWNMGKETLWVM 1476
Query: 105 NLSKNYFPRFDQHPTVLPWTTLST-----------------KIRHYLISKNNLTGEIPSW 147
+LS N F+Q P VLPW TL I Y + N L G+ PS
Sbjct: 1477 DLSNNLLTXFEQAPVVLPWITLRVLELSYNQLQGSLPVPPXSISDYFVHNNRLNGKXPSL 1536
Query: 148 ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207
IC+L L++LDLS+NNLSG + QCL + S LSVL+L+G NF G+ P TF + L+M+D
Sbjct: 1537 ICSLHHLHILDLSNNNLSGMIPQCLXDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMID 1596
Query: 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ--------- 258
S+N L+G+IP+SL NC EI +L NNQINDTFP WLGSL EL +L+L
Sbjct: 1597 FSYNQLEGQIPRSLXNCKEXEILNLGNNQINDTFPFWLGSLPELQLLILRHNRFHGAIES 1656
Query: 259 -----QLPC----------FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYR 303
+ P F G LP+ YF W AM + YM++ ++ + YR
Sbjct: 1657 PRANFEFPTLCIIDLSYNXFAGNLPAGYFLTWVAMSRVDEEHFSYMQS-MTGFVLIRTYR 1715
Query: 304 YFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363
+ +YS+TM+N+G + KIP K I LSSN+F GE+P SI L+GL +L ++SN+
Sbjct: 1716 LYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNS 1775
Query: 364 LQGHIPSCLGSLTNLESLDLSKNRL-----------TFLEFFNATHNNLTGPIPQANQFP 412
L GHIPS LG+L LE+LDLS+N L TFLEFFN +HN+L GPIPQ QF
Sbjct: 1776 LTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFN 1835
Query: 413 TFGYSSFNGNSRLCGKPLPKECAS-----------------------DWKIVLTGYTGRI 449
TF S+ GN LCG PL KEC + + IVL GY +
Sbjct: 1836 TFQNDSYEGNPGLCGNPLSKECGNSKSTASSPPTYKHGGDLESGRKVELMIVLMGYGSGL 1895
Query: 450 VVGLVFGFNFSTGIVRWFPKKLG 472
VVG+ G+ +T WF K G
Sbjct: 1896 VVGMAIGYTLTTRKHEWFVKTFG 1918
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 194/472 (41%), Positives = 257/472 (54%), Gaps = 77/472 (16%)
Query: 84 KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL----------------- 126
KIHG IPKW+ N + S ++L+ N+ F+Q LPW +L
Sbjct: 1249 KIHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQPXVXLPWXSLIYLELSSNMLQGSLPVP 1308
Query: 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG 186
+ I Y + N TG+IP CNLS L++LDLS+N LSG + +CL N LSVL+L G
Sbjct: 1309 PSSISTYFVENNRFTGKIPPLXCNLSLLHMLDLSNNTLSGMIPECLSNLXNSLSVLNLXG 1368
Query: 187 KNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLG 246
NF G P F GS L+M+DLS NLL+G +P+SL NC VLE +L NNQI+DTFP WLG
Sbjct: 1369 NNFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPRSLTNCTVLESLNLGNNQISDTFPFWLG 1428
Query: 247 SLLELNILVLIQ--------------QLP----------CFMGKLPSKYFQCWNAMKFAN 282
+L EL +L+L + P F G LPS YF W AMK +
Sbjct: 1429 ALPELQVLILRSNRFHGAIGKPRTNFEFPKLRIIDLSYNSFSGNLPSVYFLDWIAMKSID 1488
Query: 283 SSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342
+ YM+ SS FS Y+ + YS+TM+N+G ++KIP I + I SSN+F G
Sbjct: 1489 ADNFTYMQ--ASSGFSTQTYKLYDNYTYSMTMTNKGMERVYEKIPGIFRAIDFSSNKFKG 1546
Query: 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL-----------TFL 391
E+PTSI LKGL +L + N+L G IP+ L +LT LE+LDLS+N L TFL
Sbjct: 1547 EIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTELEALDLSQNNLLGEIPQQLTEMTFL 1606
Query: 392 EFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECAS--------------- 436
FFN +HNNLTGPIPQ QF TF S+ GN LCG PL ++C +
Sbjct: 1607 GFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLCGNPLIRKCGNPKQASPQPSTSEQGQ 1666
Query: 437 --------DWKIVLTGYTGRIVVGLVFGFNFSTGIVRWFPKKLGMQLKTRKR 480
D K+VL GY +V G++ G+ F+T WF K G + + ++R
Sbjct: 1667 DLEPASXFDRKVVLMGYXSXLVFGVIIGYIFTTRKHEWFVKTFGRRQQQQER 1718
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 231/585 (39%), Positives = 296/585 (50%), Gaps = 124/585 (21%)
Query: 7 SELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNF------ 60
+ LTRLT FLD L++ G IP SL L LQ+L +A N+
Sbjct: 317 ANLTRLT------------FLDL--SLNNLEGGIPTSLFELVNLQYLSVADNSLNGTVEL 362
Query: 61 ---------------------------LRELPASIGSLSSLERLDTFPPMKIHGNIPKWL 93
L E P + + LE L KIHG IPKW+
Sbjct: 363 NRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDFLQNQDELEVL-FLSDNKIHGPIPKWM 421
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS------------------TKIRHYLI 135
N S +N L+LS N F+QHP VLPW+ LS + I +Y +
Sbjct: 422 WNISQENLESLDLSGNLLTGFNQHPVVLPWSKLSILELDSNMLQGPLPIPPPSTIEYYSV 481
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
S+N L GEI ICN+SSL +LDLS NNLSG + QCL N S L +L L N G P
Sbjct: 482 SRNKLIGEISPLICNMSSLILLDLSSNNLSGRIPQCLANLSKSLFILDLGSNNLDGPIPQ 541
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILV 255
T ++LR++DL N QG+IP+S ANC +LE L NNQI+D FP WLG+L +L +L+
Sbjct: 542 TCTVPNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLI 601
Query: 256 LIQ--------------QLP----------CFMGKLPSKYFQCWNAMKFAN-SSQLRYME 290
L + P F+G LPS+YFQ W+AMK + ++ LRYM+
Sbjct: 602 LRSNRFHGAIGSWHSNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQ 661
Query: 291 NFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIAN 350
F Y + YS+TM+N G ++KIPD+ I S N F G++PTSI N
Sbjct: 662 --ARPKFQIPGYGWTAHYMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPTSIGN 719
Query: 351 LKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN-----------RLTFLEFFNATHN 399
L G +L L SNNL GHIPS LG LT LESLDLS+N R+TFL FFN +HN
Sbjct: 720 LNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHN 779
Query: 400 NLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECAS-------------------DWKI 440
+LTGPIPQ NQF TF +SF+GN LCG PL + C S DWK
Sbjct: 780 HLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSEASPPTSSSSKQGSTSEFDWKF 839
Query: 441 VLTGYTGRIVVGLVFGFNFSTGIVRWFPKKLG-MQLKTRKRIRRH 484
VL GY +V+G+ G+ ++ WF K G Q K ++ RRH
Sbjct: 840 VLMGYGSGLVIGVSIGYYLTSWKHEWFVKTFGKRQRKWTRKERRH 884
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 206/499 (41%), Positives = 269/499 (53%), Gaps = 77/499 (15%)
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTV 120
L E P + + LE + T KIHG IPKW+ N S + L LS+N+ FDQ P V
Sbjct: 477 LTEFPDFLQNQHELEII-TLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQRPFV 535
Query: 121 LPWTTLST-----------------KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNN 163
LPW+ L T YL+S N LTGEI ICN++SL +LDLS NN
Sbjct: 536 LPWSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELLDLSSNN 595
Query: 164 LSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLAN 223
LSG + QCL NFS L VL L + G P+ +L ++DL N QG+IP+SL N
Sbjct: 596 LSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQFQGQIPRSLVN 655
Query: 224 CAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ--------------QLPC------- 262
C +LE L NN+IND FP WLG+L +L +L+L + P
Sbjct: 656 CTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLRIIDLS 715
Query: 263 ---FMGKLPSKYFQCWNAMKFAN-SSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEG 318
F+G LPS+YFQ W+AMK + +S LRYM+ +S YS+TM+N+G
Sbjct: 716 DNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQ--ISPMIDLKNNVMITGYMYSMTMTNKG 773
Query: 319 QMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNL 378
+++I D I S N F G++PTSI +LKG+ +L L N+L GHIPS LG+LT L
Sbjct: 774 MQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQL 833
Query: 379 ESLDLSKN-----------RLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCG 427
ESLDLS+N RLTFLEFFN +HN+LTG IPQ QF TF +SF+GN LCG
Sbjct: 834 ESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFATFENASFDGNLGLCG 893
Query: 428 KPLPKECAS-------------------DWKIVLTGYTGRIVVGLVFGFNFSTGIVRWFP 468
PL +EC S DWKIVL GY +++G+ G+ ++ WF
Sbjct: 894 SPLSRECGSSEALPPTSSSSKQGSTTKFDWKIVLMGYGSGLLIGVSIGYCLTSWKHEWFV 953
Query: 469 KKLGMQLK--TRKRIRRHR 485
K +G + + TRK R R
Sbjct: 954 KTIGKRQRKWTRKEGRGQR 972
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 206/507 (40%), Positives = 274/507 (54%), Gaps = 78/507 (15%)
Query: 45 GNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYL 104
G+L +L+ L LA N L E P + + L+ L T KIHG IPKW+ N + +
Sbjct: 1441 GSLPRLRLLGLASCN-LSEFPHFLRNQDELKFL-TLSDNKIHGQIPKWMWNMGKETLWVM 1498
Query: 105 NLSKNYFPRFDQHPTVLPWTTLS-----------------TKIRHYLISKNNLTGEIPSW 147
+LS N F+Q P VLPW TL + I Y + N L G+ PS
Sbjct: 1499 DLSNNLLTCFEQAPVVLPWITLRVLELSYNQLQGSLPVPPSSISDYFVHNNRLNGKFPSL 1558
Query: 148 ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207
IC+L L++LDLS+NNLSG + QCL + S LSVL+L+G NF G+ P TF + L+M+D
Sbjct: 1559 ICSLHHLHILDLSNNNLSGMIPQCLSDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMID 1618
Query: 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ--------- 258
S+N L+G+IP+SL NC LEI +L NNQINDTFP WLGS EL +L+L
Sbjct: 1619 FSYNQLEGQIPRSLGNCKELEILNLGNNQINDTFPFWLGSFPELQLLILRHNRFHGAIEN 1678
Query: 259 -----QLPC----------FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYR 303
+ P F G LP+ YF W AM + YM++ ++ + YR
Sbjct: 1679 PRANFEFPTLCIIDLSYNNFAGNLPAGYFLTWVAMSRVDEENFSYMQS-MTGFVLIRTYR 1737
Query: 304 YFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363
+ +YS+TM+N+G + KIP K I LSSN+F GE+P SI L+GL +L ++SN+
Sbjct: 1738 LYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNS 1797
Query: 364 LQGHIPSCLGSLTNLESLDLSKNRL-----------TFLEFFNATHNNLTGPIPQANQFP 412
L GHIPS LG+L LE+LDLS+N L TFLEFFN +HN+L GPIPQ QF
Sbjct: 1798 LTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFN 1857
Query: 413 TFGYSSFNGNSRLCGKPLPKECAS-----------------------DWKIVLTGYTGRI 449
TF S+ GN LCG PL KEC + + IVL GY +
Sbjct: 1858 TFQNDSYEGNPGLCGNPLSKECENSKSTAPPPPTDKHGGDLESGRKVELMIVLMGYGSGL 1917
Query: 450 VVGLVFGFNFSTGIVRWFPKKLGMQLK 476
VVG+ G+ +T WF K G + +
Sbjct: 1918 VVGMAIGYTLTTRKHEWFVKTFGKRQR 1944
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 194/446 (43%), Positives = 245/446 (54%), Gaps = 74/446 (16%)
Query: 84 KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS---------------- 127
KIHG IPKW+ N S +N L+LS N FD HP VLPW+ LS
Sbjct: 478 KIHGLIPKWIWNISQENLGTLDLSXNLLTXFDXHPVVLPWSRLSILMLDSNMLQGPLPIP 537
Query: 128 --TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185
+ +Y +S+N L GEI ICN+SSL +LDLS NNLSG + QCL N S LSVL L
Sbjct: 538 PPSTXEYYSVSRNKLIGEISPLICNMSSLMILDLSSNNLSGRIPQCLANLSKSLSVLDLG 597
Query: 186 GKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWL 245
+ G P T ++LR++DL N QG+IP+S ANC +LE L NNQIBD FP WL
Sbjct: 598 SNSLDGPIPQTCTVTNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIBDIFPFWL 657
Query: 246 GSLLELNILVL----------------------IQQLP--CFMGKLPSKYFQCWNAMKFA 281
G+L +L +L+L I L F+G LPS+YFQ W+AMK
Sbjct: 658 GALPQLQVLILRSNXFHGAIGSWHXNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLT 717
Query: 282 N-SSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRF 340
+ ++ LRYM+ F Y + YS+TM N+G ++KIPDI I S N F
Sbjct: 718 DIANDLRYMQA--RXEFXBLGYTWTGHYLYSLTMXNKGMQRFYEKIPDIFIAIDFSGNNF 775
Query: 341 DGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN-----------RLT 389
G++P S NLKGL +L L NNL GHIPS LG+L LESLDLS+N R+T
Sbjct: 776 KGQIPISTGNLKGLHLLNLGDNNLTGHIPSSLGNLPRLESLDLSQNQLSGEIPLQLTRIT 835
Query: 390 FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECAS------------- 436
FL FFN +HN+LTG IPQ NQF TF +SF+GN LCG L + C S
Sbjct: 836 FLAFFNVSHNHLTGTIPQGNQFTTFPNASFDGNPGLCGSTLSRACGSFEASPPSSSSKQG 895
Query: 437 -----DWKIVLTGYTGRIVVGLVFGF 457
DWK VL GY +V+G+ G+
Sbjct: 896 STSEFDWKFVLMGYGSGLVIGVSIGY 921
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 204/501 (40%), Positives = 267/501 (53%), Gaps = 86/501 (17%)
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTV 120
L ELP+ + + LE L+ K+ G+IPKW +N S L+L+ N F+Q V
Sbjct: 397 LGELPSFLRDQNQLEILE-IGDNKLEGHIPKWFMNVSTITLEALSLAGNLLTGFEQSFDV 455
Query: 121 LPWTTLST-----------------KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNN 163
LPW L + I Y +S N L GEIP ICNL+SL VLDLS+NN
Sbjct: 456 LPWNNLRSLSLNSNKFQGSLPIPPPAIYEYQVSNNKLNGEIPEVICNLTSLSVLDLSNNN 515
Query: 164 LSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLAN 223
LSG+L CLGN S SVL+L+ +F G P+TF +G LR+VDLS N L+GKIPKSLAN
Sbjct: 516 LSGKLPPCLGNKSSTASVLNLRNNSFSGDIPETFTSGCSLRVVDLSQNKLEGKIPKSLAN 575
Query: 224 CAVLEISDLRNNQINDTFPIWLGSLLELNILVL----------------------IQQLP 261
CA LEI +L N IND FP WLG L +L +L+ I L
Sbjct: 576 CAELEILNLEQNNINDVFPSWLGMLPDLKVLIFRSNGLHGVIGKPETNVDFPRLQIVDLS 635
Query: 262 --CFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQN--DYSITMSNE 317
F GKLP +YF+ W AMK ++ L YM+ + S D R N YS+TM+N+
Sbjct: 636 NNSFKGKLPLEYFRNWTAMKNVHNEPLIYMQ----ADTSIDISRASVTNPYPYSMTMTNK 691
Query: 318 GQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377
G M ++KI D L I LSSN F+G +P + +LK L +L L++N L G IP L +L
Sbjct: 692 GVMTLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGRIPPSLSNLKE 751
Query: 378 LESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLC 426
LE+LDLS N+ LTFLE FN +HN L+GPIP+ NQF F +SF+ NS LC
Sbjct: 752 LEALDLSHNKLSGEIPVQLAQLTFLEIFNVSHNFLSGPIPRGNQFGAFDSTSFDANSGLC 811
Query: 427 GKPLPKECASD--------------------WKIVLTGYTGRIVVGLVFGFNFSTGIVRW 466
G+PL K+C +D WK+V+ GY +++G++ G +T W
Sbjct: 812 GEPLSKKCGNDVDPLPAPEEDGGSGYPLEFGWKVVVIGYATGLLIGVILGCVMNTRKYEW 871
Query: 467 FPKKL-------GMQLKTRKR 480
K G LK R R
Sbjct: 872 VVKNYFARWQNKGQHLKNRLR 892
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 206/514 (40%), Positives = 272/514 (52%), Gaps = 90/514 (17%)
Query: 47 LNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNL 106
L +LQ L L N + ELP + + LE L+ K+ G+IPKW +N S L+L
Sbjct: 480 LPKLQLLSLEGCN-IGELPGFLRDQNQLEILE-IGDNKLEGHIPKWFMNMSTITLEALSL 537
Query: 107 SKNYFPRFDQHPTVLPWTTLST-----------------KIRHYLISKNNLTGEIPSWIC 149
+ N F+Q VLPW L + I Y +S N L GEIP IC
Sbjct: 538 AGNLLTGFEQSFDVLPWNNLRSLSLNSNKFQGSLPIPPPAIFEYKVSNNKLNGEIPEVIC 597
Query: 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209
NL+SL+VLDLS NNLSG+L QCLGN S SVL+L +F G P+TF +G LR+VD S
Sbjct: 598 NLTSLFVLDLSINNLSGKLPQCLGNKSSTASVLNLHNNSFSGDIPETFTSGCSLRVVDFS 657
Query: 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ----------- 258
N L+GKIPKSLANC LEI +L N IND FP WLG L +L +++L
Sbjct: 658 QNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGVLPDLRVMILRSNGLHGVIGKPE 717
Query: 259 ---QLP----------CFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFY 302
+ P F GKLP +YF+ W AMK + L YM+ +FL+S+ + +
Sbjct: 718 TNVEFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNEDLIYMQANTSFLTSHNTME-- 775
Query: 303 RYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN 362
Q +YS+TM+N+G M ++KI D L I LSSN F+G +P + +LK L +L L++N
Sbjct: 776 ---KQYEYSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNN 832
Query: 363 NLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQF 411
L G IP L +L LE+LDLS N+ LTFL FN +HN L+G IP+ NQF
Sbjct: 833 FLSGGIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQF 892
Query: 412 PTFGYSSFNGNSRLCGKPLPKECA--------------------SDWKIVLTGYTGRIVV 451
TF +SF+ N LCG+PL KEC S WK+V+ GY +V+
Sbjct: 893 ETFDNTSFDANPGLCGEPLSKECGNGEDSLPAAKEDEGSGSPPESRWKVVVIGYASGLVI 952
Query: 452 GLVFGFNFSTGIVRWFPKKLGMQLKTRKRIRRHR 485
G++ G +T W L RRHR
Sbjct: 953 GVILGCAMNTRKYEW--------LVENYFARRHR 978
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/513 (38%), Positives = 268/513 (52%), Gaps = 82/513 (15%)
Query: 47 LNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNL 106
L ++Q L L N E P+ + + LE ++ KI G+IP W +N + +L+L
Sbjct: 451 LPKIQILGLGGCNLSGEFPSFLHGQNHLEFVE-LGGNKIEGHIPTWFMNLGTETLWHLDL 509
Query: 107 SKNYFPRFDQHPTVLPWTTLS-----------------TKIRHYLISKNNLTGEIPSWIC 149
N F+Q +LPW L I Y++S N+L GEIP IC
Sbjct: 510 IGNLLTGFEQSVDILPWNNLRYLRLSFNKLDGALPIPPHSIIIYIVSDNHLNGEIPPAIC 569
Query: 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209
NL+SL +L LS+NNLSG+L QCLGN S SVL L+ F G P+ F +G LR +D S
Sbjct: 570 NLTSLVILQLSNNNLSGKLPQCLGNISNTASVLDLRNNTFSGDIPEAFSSGCTLRAIDFS 629
Query: 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL------------- 256
N L+GKIPKSLANC LEI ++ N+I D FP WLG L +L +L+L
Sbjct: 630 QNQLEGKIPKSLANCTKLEILNIEQNKITDVFPSWLGILPKLRVLILRSNRLHGVIGKPK 689
Query: 257 ----IQQLP-------CFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYF 305
Q+L CF+G LP +YF+ W+AMK + YM+ + S F Y
Sbjct: 690 ANFEFQRLQIVDLSGNCFLGNLPLEYFRNWSAMKTIYKERPLYMQ--VVSSFQLPRYGMT 747
Query: 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365
DYS+TM+N+G M ++KI + L I LSSNRF+G +P ++ +LK L +L L++N L
Sbjct: 748 YHFDYSMTMTNKGVMTLYEKIQEFLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLT 807
Query: 366 GHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTF 414
G IP L +L LE+LDLS+N+ LTFL FN +HN L+GPIP+ NQF TF
Sbjct: 808 GRIPPSLSNLKGLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETF 867
Query: 415 GYSSFNGNSRLCGKPLPKECAS--------------------DWKIVLTGYTGRIVVGLV 454
+SF+ +S LCGKPL K+C S W +V+ GY +V G +
Sbjct: 868 DSTSFDADSGLCGKPLSKKCGSGEDSLPAPKEDEGSGSPLEFGWTVVVIGYASGLVTGAI 927
Query: 455 FGFNFSTGIVRWFPKKL-------GMQLKTRKR 480
G +T W K G LKTR R
Sbjct: 928 LGCVMNTRKYEWQVKNYFVSWQHKGQYLKTRLR 960
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548700|ref|XP_002515406.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223545350|gb|EEF46855.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 197/506 (38%), Positives = 264/506 (52%), Gaps = 79/506 (15%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100
P S L++L+ L L+ N LRE PA + + LE LD K+ G IP W+LN ++N
Sbjct: 422 PNSNATLSKLRVLGLSSCN-LREFPAFLRWQNELEFLD-LSRNKLEGLIPNWILNWGIEN 479
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTK-----------------IRHYLISKNNLTGE 143
++LNL+ N+ F+Q +LPWT L I Y +SKN GE
Sbjct: 480 LTFLNLAYNFLTGFEQPLNLLPWTNLHVFNLTSNEFQGTLPVPPPFITIYSVSKNKFNGE 539
Query: 144 IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203
I CNL+S+ +DLS NNL+GEL CLGN +SVL L+ +F G PD + G L
Sbjct: 540 ISPLFCNLTSVLAVDLSSNNLTGELPPCLGNLGNFVSVLDLRNNSFSGKIPDEYTIGCKL 599
Query: 204 RMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL------- 256
RM+DLS N ++GK+P+SLANC +LEI + NQIND FP WLG L EL IL L
Sbjct: 600 RMIDLSQNKIEGKVPRSLANCTMLEILNFGKNQINDIFPSWLGILPELRILTLRSNKLHG 659
Query: 257 ----------IQQLPCF-------MGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSF 299
+L GKLP +Y + W AMK + L YM+ ++ F
Sbjct: 660 AIGEPLTSSEFSRLQIIDLSDNNCTGKLPVEYIRNWAAMKIVDKDHLLYMQ--ANTSFQI 717
Query: 300 DFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGL 359
+ + + YSITM+N+G + KI + I LS+NRF+G +P I +LK LQ+L L
Sbjct: 718 RDFLWHGDHIYSITMTNKGTETVYQKILEFFVAIDLSNNRFEGGIPEVIGSLKELQLLNL 777
Query: 360 ASNNLQGHIPSCLGSLTNLESLDLSKN-----------RLTFLEFFNATHNNLTGPIPQA 408
+ N L G IPS LG+L LE+LD S N RLTFL FFNA+HN+LTGPIP+
Sbjct: 778 SKNILTGSIPSSLGNLKQLEALDFSTNKLSGEIPMQLARLTFLSFFNASHNHLTGPIPRG 837
Query: 409 NQFPTFGYSSFNGNSRLCGKPLPKECASD-----------------------WKIVLTGY 445
NQF TF +SF N LCG PL ++C WK+ L GY
Sbjct: 838 NQFDTFQNNSFEANLGLCGYPLSEKCGDKNGTSSLAPPEDEDEDSESSFEFSWKVALIGY 897
Query: 446 TGRIVVGLVFGFNFSTGIVRWFPKKL 471
+++G++ G + W K L
Sbjct: 898 ASGLLIGVIIGGTMNIRKYEWLIKNL 923
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| TAIR|locus:2090754 | 711 | RLP43 "receptor like protein 4 | 0.705 | 0.482 | 0.385 | 2.7e-52 | |
| TAIR|locus:2085537 | 894 | RLP34 "AT3G11010" [Arabidopsis | 0.679 | 0.369 | 0.394 | 1e-51 | |
| TAIR|locus:2078112 | 868 | RLP32 "receptor like protein 3 | 0.740 | 0.414 | 0.357 | 1.8e-51 | |
| TAIR|locus:2074633 | 943 | RLP35 "AT3G11080" [Arabidopsis | 0.695 | 0.358 | 0.368 | 1.2e-49 | |
| TAIR|locus:2144392 | 957 | RLP53 "receptor like protein 5 | 0.726 | 0.368 | 0.369 | 2.1e-49 | |
| TAIR|locus:2055772 | 983 | RLP19 "receptor like protein 1 | 0.853 | 0.422 | 0.329 | 3.1e-46 | |
| TAIR|locus:2825389 | 784 | RLP11 "AT1G71390" [Arabidopsis | 0.792 | 0.491 | 0.334 | 6.7e-46 | |
| TAIR|locus:2094563 | 595 | RLP36 "receptor like protein 3 | 0.709 | 0.579 | 0.341 | 2.1e-45 | |
| TAIR|locus:2180587 | 811 | RLP52 "receptor like protein 5 | 0.798 | 0.478 | 0.338 | 2.3e-45 | |
| TAIR|locus:2078102 | 875 | RLP33 "receptor like protein 3 | 0.656 | 0.364 | 0.353 | 4.1e-45 |
| TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 142/368 (38%), Positives = 199/368 (54%)
Query: 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKW 92
+++F GQIP S+GNL+ L L L NNF ++P+ IG+LS L RLD G IP W
Sbjct: 226 VNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLD-LSSNNFFGEIPGW 284
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLS 152
L ++ N Y+NLS N F F Q P P ++ H L S NN TG+IPS+IC L
Sbjct: 285 LW--TLPNLFYVNLSYNTFIGF-QRPNK-PEPSMG----HLLGSNNNFTGKIPSFICELR 336
Query: 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL 212
SL LDLSDNN SG + +C+GN LS L+L+ N G P LR +D+ HN
Sbjct: 337 SLETLDLSDNNFSGLIPRCMGNLKSNLSHLNLRQNNLSGGLPKHIFE--ILRSLDVGHNQ 394
Query: 213 LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYF 272
L GK+P+SL + LE+ ++ +N+INDTFP WL SL +L +LVL F G + F
Sbjct: 395 LVGKLPRSLRFFSTLEVLNVESNRINDTFPFWLTSLPKLQVLVLRSN--AFHGPIHEASF 452
Query: 273 QCWNAMKFANSSQLRYMENXXXXXXXXXXXXXXPQN----DY--------SITMSNEGQM 320
+ +++ + + ++ +Y S+ + N+G
Sbjct: 453 LKLRIIDISHNHFNGTLPSDYFVKWSAMSSLGTDEDRSNANYMGSVYYQDSMVLMNKGVE 512
Query: 321 MTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLES 380
+I I + S N+F+GE+P SI LK L VL L++N GHIPS +G LT LES
Sbjct: 513 SELIRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALES 572
Query: 381 LDLSKNRL 388
LD+S+N+L
Sbjct: 573 LDVSQNKL 580
|
|
| TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 1.0e-51, P = 1.0e-51
Identities = 151/383 (39%), Positives = 202/383 (52%)
Query: 84 KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLI-SKNNLTG 142
KI G +P WL ++ N YLNLS N F F Q PT P +++ YL+ S NN TG
Sbjct: 459 KIKGQVPGWLW--TLPNLFYLNLSNNTFIGF-QRPTK-PEPSMA-----YLLGSNNNFTG 509
Query: 143 EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202
+IPS+IC L SLY LDLSDNN SG + +C+ N LS L+L+ N G P+
Sbjct: 510 KIPSFICELRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHIFES-- 567
Query: 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL------ 256
LR +D+ HN L GK+P+SL + LE+ ++ +N+IND FP WL SL +L +LVL
Sbjct: 568 LRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFH 627
Query: 257 --IQQ--LPC----------FMGKLPSKYFQCWNAMKFANSSQLRYMENXXXXXXXXXXX 302
I Q P F G LP++YF W+ M S L E+
Sbjct: 628 GPINQALFPKLRIIDISHNHFNGSLPTEYFVEWSRM-----SSLGTYEDGSNVNYLGSGY 682
Query: 303 XXXPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN 362
D S+ + N+G +I I + S N+F+GE+P SI LK L VL L++N
Sbjct: 683 Y----QD-SMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNN 737
Query: 363 NLQGHIPSCLGSLTNLESLDLSKNRL-----------TFLEFFNATHNNLTGPIPQANQF 411
GHIPS +G+LT LESLD+S+N+L + L + N +HN LTG +P QF
Sbjct: 738 AFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQF 797
Query: 412 PTFGYSSFNGNSRLCGKPLPKEC 434
T SSF GN L G L + C
Sbjct: 798 LTQRCSSFEGNLGLFGSSLEEVC 820
|
|
| TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 1.8e-51, P = 1.8e-51
Identities = 145/406 (35%), Positives = 204/406 (50%)
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTV 120
+ E P + S + LD KI G +P WL ++ +++LS N F F++ T
Sbjct: 402 ITEFPELLRSQHKMTNLD-ISNNKIKGQVPGWLW--TLPKLIFVDLSNNIFTGFERS-TE 457
Query: 121 LPWTTLSTKIRHYLI-SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179
+ ++ YL+ S NN TG+IPS+IC L SL LDLSDNNL+G + C+GN L
Sbjct: 458 HGLSLITKPSMQYLVGSNNNFTGKIPSFICALRSLITLDLSDNNLNGSIPPCMGNLKSTL 517
Query: 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239
S L+L+ G P + LR +D+ HN L GK+P+S + LE+ ++ NN+IND
Sbjct: 518 SFLNLRQNRLGGGLPRSIFKS--LRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRIND 575
Query: 240 TFPIWLGSLLELNILVLIQQL---PC-----------------FMGKLPSKYFQCWNAMK 279
TFP WL SL +L +LVL P F G LP+ YF WNAM
Sbjct: 576 TFPFWLSSLKKLQVLVLRSNAFHGPIHHASFHTLRIINLSHNQFSGTLPANYFVNWNAMS 635
Query: 280 FANSSQLRYMENXXXXXXXXXXXXXXPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNR 339
+++ R E +D S+ + N+G M +I I + S N+
Sbjct: 636 SLMATEDRSQEKYMGDSFRYY-------HD-SVVLMNKGLEMELVRILKIYTALDFSENK 687
Query: 340 FDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT---------- 389
+GE+P SI LK L VL L+SN GHIPS +G+L LESLD+S+N+L+
Sbjct: 688 LEGEIPRSIGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNL 747
Query: 390 -FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKEC 434
+L + N +HN L G +P QF SSF N L G L + C
Sbjct: 748 SYLAYMNFSHNQLGGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVC 793
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| TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 141/383 (36%), Positives = 197/383 (51%)
Query: 84 KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG 142
KI G +P WL ++ N YLNLS N F F+ +++ + H S NN TG
Sbjct: 502 KIKGQVPGWLW--TLPNLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTG 559
Query: 143 EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202
+IPS+IC L SL LDLS+NN +G + +C+ L VL+L+ N G P
Sbjct: 560 KIPSFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFES-- 617
Query: 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL------ 256
LR +D+ HNLL GK+P+SL + LE+ ++ +N+INDTFP WL SL +L +LVL
Sbjct: 618 LRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFH 677
Query: 257 --IQQ--LP----------CFMGKLPSKYFQCWNAMKFANSSQLRYMENXXXXXXXXXXX 302
I + P F G LP++YF W+AM ++ + E
Sbjct: 678 GPIHEATFPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYY--- 734
Query: 303 XXXPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN 362
D S+ + N+G M +I I + S N+F+GE+P SI LK L VL L++N
Sbjct: 735 -----QD-SMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNN 788
Query: 363 NLQGHIPSCLGSLTNLESLDLSKNRLT-----------FLEFFNATHNNLTGPIPQANQF 411
GHIPS +G+LT LESLD+S+N+LT FL + N +HN L G +P QF
Sbjct: 789 AFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQF 848
Query: 412 PTFGYSSFNGNSRLCGKPLPKEC 434
S+F N L G L + C
Sbjct: 849 RRQNCSAFENNLGLFGPSLDEVC 871
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| TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.1e-49, P = 2.1e-49
Identities = 150/406 (36%), Positives = 208/406 (51%)
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTV 120
+ E P + + L LD KI G +P WL + Y+NLS N F Q P+
Sbjct: 499 ITEFPEFVRTQHELGFLD-ISNNKIKGQVPDWLWR--LPILYYVNLSNNTLIGF-QRPSK 554
Query: 121 LPWTTLSTKIRHYLI-SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179
P +L YL+ S NN G+IPS+IC L SL LDLSDNN +G + +C+G+ L
Sbjct: 555 -PEPSLL-----YLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTL 608
Query: 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239
SVL+L+ + G P LR +D+ HN L GK+P+SL+ + LE+ ++ +N+IND
Sbjct: 609 SVLNLRQNHLSGGLPKQIFE--ILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRIND 666
Query: 240 TFPIWLGSLLELNILVL--------IQQ--LP----------CFMGKLPSKYFQCWNAMK 279
TFP WL SL +L +LVL I + P F G LP++YF W+AM
Sbjct: 667 TFPFWLSSLPKLQVLVLRSNAFHGPIHEATFPELRIIDISHNRFNGTLPTEYFVKWSAMS 726
Query: 280 FANSSQLRYMENXXXXXXXXXXXXXXPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNR 339
++ + E D S+ + N+G M +I I + S NR
Sbjct: 727 SLGKNEDQSNEKYMGSGLYY--------QD-SMVLMNKGVAMELVRILTIYTAVDFSGNR 777
Query: 340 FDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT---------- 389
F+GE+P SI LK L VL L++N GH+PS +G+LT LESLD+SKN+LT
Sbjct: 778 FEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDL 837
Query: 390 -FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKEC 434
FL + N +HN L G +P QF T S+F N L G L + C
Sbjct: 838 SFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVC 883
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| TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.1e-46, P = 3.1e-46
Identities = 154/467 (32%), Positives = 220/467 (47%)
Query: 7 SELTRLTILLFYLMTSDSPFLDRLQRL-SDFSGQIPPSLGNLNQLQWLDLAFNNF-LREL 64
S L T + Y + S LD L S S SL N + + L + + E
Sbjct: 458 SHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGITEF 517
Query: 65 PASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTV-LPW 123
P + S + LD KI G +P WL + N Y+NLS N F F++ + L
Sbjct: 518 PKFLRSQELMLTLD-ISNNKIKGQVPGWLWMLPVLN--YVNLSNNTFIGFERSTKLGLTS 574
Query: 124 TTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNF-SGGLSVL 182
+R S NN TG IPS+IC L L LD S+N +G + C+GN S L L
Sbjct: 575 IQEPPAMRQLFCSNNNFTGNIPSFICELPYLSTLDFSNNKFNGSIPTCMGNIQSPYLQAL 634
Query: 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP 242
+L+ G P+ L +D+ HN L GK+P+SL++ + L + ++ +N+I+DTFP
Sbjct: 635 NLRHNRLSGLLPENIFES--LISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFP 692
Query: 243 IWLGSLLELNILVL--------IQQLPC------------FMGKLPSKYFQCWNAMKFAN 282
+WL SL EL +LVL I++ F G LP+ +F W AM F+
Sbjct: 693 LWLSSLQELQVLVLRSNAFYGPIEKTQFSKLRIIDISGNQFNGTLPANFFVNWTAM-FS- 750
Query: 283 SSQLRYMENXXXXXXXXXXXXXXPQNDY----SITMSNEGQMMTHDKIPDILKGIILSSN 338
++ DY S+ + N+G M +++ + I S N
Sbjct: 751 ------LDENEDQSNGETMSNMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGN 804
Query: 339 RFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL---------- 388
+F+GE+P SI LK L VL L++N L GHI S +G+L LESLD+S+N+L
Sbjct: 805 KFEGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGK 864
Query: 389 -TFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKEC 434
T+L + N +HN L G +P QF T SSF N L G L K C
Sbjct: 865 LTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKIC 911
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| TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 6.7e-46, Sum P(2) = 6.7e-46
Identities = 145/433 (33%), Positives = 206/433 (47%)
Query: 17 FYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLER 76
F ++S S + + + G IP S+ L LD+A NN +P S+ L SL R
Sbjct: 287 FANISSSSKLQNLILTRNKLDGSIPESISKFLNLVLLDVAHNNISGPVPRSMSKLVSL-R 345
Query: 77 LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLIS 136
+ F K+ G +P WL S LS N F F++ + T I+ +S
Sbjct: 346 IFGFSNNKLEGEVPSWLWR-----LSSTMLSHNSFSSFEKI------YSKETMIQVLDLS 394
Query: 137 KNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDT 196
N+ G P WIC L L+ LDLS+N +G + CL NF+ L+ L L F GT PD
Sbjct: 395 FNSFRGTFPVWICKLKGLHFLDLSNNLFNGSIPLCLRNFN--LTGLILGNNKFSGTLPDI 452
Query: 197 FMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
F N ++L+ +D+S N L+GK PKSL NC L ++ +N+I DTFP WLGSL L +L+L
Sbjct: 453 FANNTNLQSLDVSGNQLEGKFPKSLINCKGLHFVNVESNKIKDTFPSWLGSLPSLQVLIL 512
Query: 257 IQQLPCFMGKL--PSKY--FQCWNAMKFANS-----------SQLRYMENXXXXXXXXXX 301
F G L PS FQ + +++ S R M
Sbjct: 513 RSN--DFYGPLYHPSMSIGFQGLRIIDISHNGFSGVLPPNFFSSWREMITLVHGSYEYIE 570
Query: 302 XXXXPQNDY-SITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLA 360
Y S+ M N+G M+ ++I + I S NR GE+P SI L+ L++L L+
Sbjct: 571 DIQNYSLIYRSMEMVNKGVEMSFERIRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLS 630
Query: 361 SNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQ-ANQFPTFGYSSF 419
N IP +LT LE+LDLS+N+L+ G IPQ + Y +F
Sbjct: 631 GNAFTSDIPRVWENLTKLETLDLSRNKLS-------------GQIPQDLGKLSFLSYMNF 677
Query: 420 NGNSRLCGKPLPK 432
+ N RL G P+P+
Sbjct: 678 SHN-RLQG-PVPR 688
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| TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 128/375 (34%), Positives = 193/375 (51%)
Query: 34 SDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWL 93
++ G IP S+ L L++LD++ NNF ++P SI + +L +D K+ G +P ++
Sbjct: 126 NNLDGLIPESISKLVNLEYLDVSHNNFGGQVPRSISKVVNLTSVD-LSYNKLEGQVPDFV 184
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSS 153
S Y++LS N F F + V+ +L T + + N++ G P WIC +
Sbjct: 185 WRSS--KLDYVDLSYNSFNCFAKSVEVIDGASL-TMLN---LGSNSVDGPFPKWICKVKD 238
Query: 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLL 213
LY LDLS+N+ +G + QCL +S L+L+ + G P+ F+ S LR +D+S N L
Sbjct: 239 LYALDLSNNHFNGSIPQCL-KYSTYFHTLNLRNNSLSGVLPNLFIKDSQLRSLDVSSNNL 297
Query: 214 QGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKL--PSKY 271
GK+PKSL NC +E +++ N+I DTFP WLGSL L +L+L F G + PS Y
Sbjct: 298 VGKLPKSLINCERIEFLNVKGNKIMDTFPFWLGSLPYLKVLMLGSN--AFYGPVYNPSAY 355
Query: 272 --FQCWNAMKFANSSQLR-----YMENXXXXXXXXXXXXXXPQNDY----------SITM 314
F + +N++ + Y N PQ Y SI +
Sbjct: 356 LGFPSIRIIDISNNNFVGSLPQDYFANWLEMSLVWSGSDI-PQFKYMGNVNFSTYDSIDL 414
Query: 315 SNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGS 374
+G D+I + I S NRF G +P SI L L++L L+ N G+IP L +
Sbjct: 415 VYKGVETDFDRIFEGFNAIDFSGNRFSGHIPGSIGLLSELRLLNLSGNAFTGNIPPSLAN 474
Query: 375 LTNLESLDLSKNRLT 389
+TNLESLDLS+N L+
Sbjct: 475 ITNLESLDLSRNNLS 489
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| TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 2.3e-45, P = 2.3e-45
Identities = 150/443 (33%), Positives = 221/443 (49%)
Query: 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPM---KIHGNI 89
+++ +G+IP ++G L +L+ L L N E+PA IG +S LER + K+ N+
Sbjct: 315 VNELTGEIPRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLERFEVSENQLTGKLPENL 374
Query: 90 PKWLLNPSMKNFSYLNLSKNYFPRFDQHPT---VLPWT---TLSTKIRHYLISKNNLTGE 143
S+ +S NL+ T VL + S I + S NN TG+
Sbjct: 375 CHGGKLQSVIVYSN-NLTGEIPESLGDCETLSSVLLQNNGFSGSVTISNNTRSNNNFTGK 433
Query: 144 IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF-GTTPDTFMNGSD 202
IPS+IC L SL +LDLS N +G + +C+ N S L VL+L GKN G+ P+ +
Sbjct: 434 IPSFICELHSLILLDLSTNKFNGSIPRCIANLST-LEVLNL-GKNHLSGSIPENI--STS 489
Query: 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL------ 256
++ +D+ HN L GK+P+SL + LE+ ++ +N+INDTFP WL S+ +L +LVL
Sbjct: 490 VKSIDIGHNQLAGKLPRSLVRISSLEVLNVESNKINDTFPFWLDSMQQLQVLVLRSNAFH 549
Query: 257 --IQQ-----LPC-------FMGKLPSKYFQCWNAMKFANSSQLRYMENXXXXXXXXXXX 302
I Q L F G LP +F W AM + +YM
Sbjct: 550 GSINQNGFSKLRIIDISGNHFNGTLPLDFFVNWTAMFSLGKIEDQYMGTNYMRTNYY--- 606
Query: 303 XXXPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN 362
+D SI + +G + +I + I S N+F+GE+P S+ LK L VL L++N
Sbjct: 607 -----SD-SIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSVGLLKELHVLNLSNN 660
Query: 363 NLQGHIPSCLGSLTNLESLDLSKNRLT-----------FLEFFNATHNNLTGPIPQANQF 411
GHIPS +G+L LESLD+S+N+L+ +L + N + N G +P QF
Sbjct: 661 GFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQFVGLVPGGTQF 720
Query: 412 PTFGYSSFNGNSRLCGKPLPKEC 434
T SSF N RL G L + C
Sbjct: 721 QTQPCSSFADNPRLFGLSLERVC 743
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| TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 4.1e-45, P = 4.1e-45
Identities = 121/342 (35%), Positives = 186/342 (54%)
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTV 120
+ E P + + + LD KI G +P WLL Y+++S N F F++ T
Sbjct: 417 ITEFPDILRTQRQMRTLD-ISNNKIKGQVPSWLL----LQLEYMHISNNNFIGFERS-TK 470
Query: 121 LPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179
L T + ++H+ S NN +G+IPS+IC+L SL +LDLS+NN SG + C+G F L
Sbjct: 471 LEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTL 530
Query: 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239
S L+L+ G+ P T + LR +D+SHN L+GK+P+SL + + LE+ ++ +N+IND
Sbjct: 531 SDLNLRRNRLSGSLPKTIIKS--LRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRIND 588
Query: 240 TFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANS---SQLR---YMENXX 293
TFP WL SL +L +LVL F G++ F + + + L ++E
Sbjct: 589 TFPFWLSSLKKLQVLVLRSN--AFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTG 646
Query: 294 XXXXXXXXXXXXPQ---NDY---SITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTS 347
+ + Y S+ + N+G M +I I + S N+F+GE+P S
Sbjct: 647 MHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRS 706
Query: 348 IANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
I LK L +L L+SN GHIPS +G+L LESLD+S+N+L+
Sbjct: 707 IGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLS 748
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00029112001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (1311 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 486 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-31 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-25 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-20 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-20 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-31
Identities = 120/429 (27%), Positives = 175/429 (40%), Gaps = 76/429 (17%)
Query: 34 SDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWL 93
++ SG+IP +G L L LDL +NN +P+S+G+L +L+ L + K+ G IP +
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSI 280
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSS 153
S++ L+LS N + P ++ + +I H NN TG+IP + +L
Sbjct: 281 F--SLQKLISLDLSDNSLS--GEIPELVIQLQ-NLEILHLF--SNNFTGKIPVALTSLPR 333
Query: 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLL 213
L VL L N SGE+ + LG L+VL L N G P+ + +L + L N L
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392
Query: 214 QGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQ 273
+G+IPKSL C L L++N + +LP KLP YF
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSG-------------------ELPSEFTKLPLVYFL 433
Query: 274 CWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGI 333
+ R + S ++F S L+ +
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-------------LENL 480
Query: 334 ILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT---- 389
LS N+F G +P + +L L L L+ N L G IP L S L SLDLS N+L+
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540
Query: 390 --FLEF-----------------------------FNATHNNLTGPIPQANQFPTFGYSS 418
F E N +HN+L G +P F S+
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600
Query: 419 FNGNSRLCG 427
GN LCG
Sbjct: 601 VAGNIDLCG 609
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Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 95/279 (34%), Positives = 135/279 (48%), Gaps = 38/279 (13%)
Query: 125 TLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSL 184
T S+ +R+ +S NN TG IP ++ +L LDLS+N LSGE+ +G+FS L VL L
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSS-LKVLDL 171
Query: 185 QGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW 244
G G P++ N + L + L+ N L G+IP+ L L+ L N ++ P
Sbjct: 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231
Query: 245 LGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLS-----SY 296
+G L LN L L+ G +PS N L+Y+ +N LS S
Sbjct: 232 IGGLTSLNHLDLVYN--NLTGPIPSS---------LGNLKNLQYLFLYQNKLSGPIPPSI 280
Query: 297 FSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDI------LKGIILSSNRFDGEMPTSIAN 350
FS Q S+ +S+ +IP++ L+ + L SN F G++P ++ +
Sbjct: 281 FSL-------QKLISLDLSDN---SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330
Query: 351 LKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
L LQVL L SN G IP LG NL LDLS N LT
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 2e-20
Identities = 86/321 (26%), Positives = 133/321 (41%), Gaps = 72/321 (22%)
Query: 102 SYLNLSKNYFPRFDQHPTVLPWT----TLSTKIRHYLISKNNLTGEIPSWICNLSSLYVL 157
S +N Y ++ V W S+++ +S N++G+I S I L + +
Sbjct: 39 SSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTI 98
Query: 158 DLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI 217
+LS+N LSG + + S L L+L NF G+ P + +L +DLS+N+L G+I
Sbjct: 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEI 156
Query: 218 PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNA 277
P + + + L++ DL N + P L +L L L L +G++P +
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--LVGQIPREL------ 208
Query: 278 MKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSS 337
GQM + LK I L
Sbjct: 209 ----------------------------------------GQMKS-------LKWIYLGY 221
Query: 338 NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT-------- 389
N GE+P I L L L L NNL G IPS LG+L NL+ L L +N+L+
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281
Query: 390 ---FLEFFNATHNNLTGPIPQ 407
L + + N+L+G IP+
Sbjct: 282 SLQKLISLDLSDNSLSGEIPE 302
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 5e-20
Identities = 77/222 (34%), Positives = 106/222 (47%), Gaps = 18/222 (8%)
Query: 27 LDRLQRL----SDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
L RLQ L + FSG+IP +LG N L LDL+ NN E+P + S +L +L F
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390
Query: 83 MKIHGNIPKWLLNPSMKNFSYLNLSKNYFP-RFDQHPTVLPWTTLSTKIRHYL-ISKNNL 140
+ G IPK L + ++ + L N F T LP + ++L IS NNL
Sbjct: 391 -SLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLP-------LVYFLDISNNNL 440
Query: 141 TGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNG 200
G I S ++ SL +L L+ N G L G S L L L F G P +
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSL 498
Query: 201 SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP 242
S+L + LS N L G+IP L++C L DL +NQ++ P
Sbjct: 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 329 ILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR- 387
+ G+ L + G +P I+ L+ LQ + L+ N+++G+IP LGS+T+LE LDLS N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 388 ----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYS-SFNGNSRLCGKPLPKECA 435
LT L N N+L+G +P A S +F N+ LCG P + C
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538
Query: 436 S 436
Sbjct: 539 P 539
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 34/141 (24%)
Query: 118 PTVLPWTTLS----TKIRHYLISK---NN--LTGEIPSWICNLSSLYVLDLSDNNLSGEL 168
P PW+ + + I +N L G IP+ I L L ++LS N++ G +
Sbjct: 399 PQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI 458
Query: 169 LQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLE 228
LG+ + L ++DLS+N G IP+SL L
Sbjct: 459 PPSLGSITS-------------------------LEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 229 ISDLRNNQINDTFPIWLGSLL 249
I +L N ++ P LG L
Sbjct: 494 ILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 22 SDSPFLDRLQ--RLSDFS--GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERL 77
+D L LQ LS S G IPPSLG++ L+ LDL++N+F +P S+G L+SL L
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 27/75 (36%), Positives = 37/75 (49%)
Query: 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241
L L + G P+ L+ ++LS N ++G IP SL + LE+ DL N N +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 242 PIWLGSLLELNILVL 256
P LG L L IL L
Sbjct: 483 PESLGQLTSLRILNL 497
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 56/136 (41%)
Query: 38 GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPS 97
G IP + L LQ ++L+ N+ +P S+GS++SLE LD
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD------------------- 472
Query: 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVL 157
LS N F G IP + L+SL +L
Sbjct: 473 --------LSYNSF-----------------------------NGSIPESLGQLTSLRIL 495
Query: 158 DLSDNNLSGELLQCLG 173
+L+ N+LSG + LG
Sbjct: 496 NLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL 388
LK + LS+NR + L L+VL L+ NNL P L +L SLDLS N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 15/60 (25%), Positives = 23/60 (38%)
Query: 178 GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237
L L L F +L+++DLS N L P++ + L DL N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFN 395
L+ L L++N + +P L +L NLE+LDLS N++T L +
Sbjct: 1 TNLETLDLSNNQITD-LPP-LSNLPNLETLDLSGNKITDLSPLS 42
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.94 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.83 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.73 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.53 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.42 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.38 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.31 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.27 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.23 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.19 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.18 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.14 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.12 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.11 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.06 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.01 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.94 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.91 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.88 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.88 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.81 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.79 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.56 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.5 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.47 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.12 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.11 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.11 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.07 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.02 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.0 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.99 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.98 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.97 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.95 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.81 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.59 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.59 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.51 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.46 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.27 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.25 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.92 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.79 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.4 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 95.29 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.15 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.85 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 93.06 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 92.96 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.19 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.19 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 91.59 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 90.39 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.33 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 90.04 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.01 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.01 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 89.87 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.1 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.71 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 83.25 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 80.08 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=416.27 Aligned_cols=414 Identities=30% Similarity=0.433 Sum_probs=298.4
Q ss_pred cccccCcccceeeeehhccCCC------hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 3 RCLCSELTRLTILLFYLMTSDS------PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~~~~------~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
++.+.+|++++++++.+....+ +.|+.|+ ++|.+.+.+|..++++++|++|+|++|++.+.+|..|+.+++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 4567788888888877554433 3344444 67888888888888888888888888888888888888888888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL 154 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 154 (486)
+|+++ +|.+++.+|..+.+ +++|++|++++|.+... +|..+. +++|++|++++|.+++.+|..+.++++|
T Consensus 240 ~L~L~-~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 240 HLDLV-YNNLTGPIPSSLGN--LKNLQYLFLYQNKLSGP------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred EEECc-CceeccccChhHhC--CCCCCEEECcCCeeecc------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 88888 88888888888888 88888888888887643 444444 6667777777777666666666666677
Q ss_pred CEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccC
Q 048443 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 234 (486)
+.|++++|.+.+..|..+..+++ |+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.++..+++|+.|++++
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCC-CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 77777766666666666666665 66666666666666666666666666666666666666666665566666666666
Q ss_pred CccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccc----------ccccccc---
Q 048443 235 NQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLS----------SYFSFDF--- 301 (486)
Q Consensus 235 N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~----------~~~~~~~--- 301 (486)
|.+.+..|.++..+++|+.|++++|. +.+.+|.. |..++.|+.+++++|........ ..+..+.
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~--l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNS--FSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCE--eeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 66655556555566666666665543 33344433 44555555555554432111100 0000000
Q ss_pred ---cccCCCCcceEEeecCCCccccCc---ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCC
Q 048443 302 ---YRYFPQNDYSITMSNEGQMMTHDK---IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSL 375 (486)
Q Consensus 302 ---~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 375 (486)
...-...+..++++++.+....+. .++.|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 001124577888888887655443 36789999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCC
Q 048443 376 TNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 376 ~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~ 429 (486)
++|+.|||++|+ +++|+.+++++|+++|.+|...++.++...++.|||.+|+.+
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999 457999999999999999999999999999999999999864
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=386.99 Aligned_cols=413 Identities=26% Similarity=0.371 Sum_probs=354.7
Q ss_pred ccccCcccceeeeehhccCCC------hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCe
Q 048443 4 CLCSELTRLTILLFYLMTSDS------PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLER 76 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~~~------~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 76 (486)
+...+|++++++.+.+....+ +.|+.|+ ++|.+.+.+|..++++++|++|+|++|++.+.+|..++.+++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 346788999999887654433 3455555 789999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC
Q 048443 77 LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY 155 (486)
Q Consensus 77 L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 155 (486)
|+++ +|.+.+.+|..+.. +++|++|++++|.++.. +|..+. +++|++|++++|.+++.+|..+.++++|+
T Consensus 217 L~L~-~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 217 IYLG-YNNLSGEIPYEIGG--LTSLNHLDLVYNNLTGP------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred EECc-CCccCCcCChhHhc--CCCCCEEECcCceeccc------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 9999 99999999999999 99999999999998865 566676 89999999999999999999999999999
Q ss_pred EEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCC
Q 048443 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNN 235 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 235 (486)
+|++++|.+.+..|..+..++. |+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred EEECcCCeeccCCChhHcCCCC-CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 9999999999999999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccccc----------ccccccc--
Q 048443 236 QINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSY----------FSFDFYR-- 303 (486)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~----------~~~~~~~-- 303 (486)
.+.+..|.++..+++|+.|++++|. ..+.+|.. +..+++|+.+++++|.........+ ++.+...
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~--l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNS--LEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCE--ecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 9999999999999999999999975 56677765 7889999999999885432221111 1111111
Q ss_pred -----cCCCCcceEEeecCCCccccCcc--cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCC
Q 048443 304 -----YFPQNDYSITMSNEGQMMTHDKI--PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLT 376 (486)
Q Consensus 304 -----~~~~~~~~l~~~~~~~~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 376 (486)
.-.+.+..++++++.+....+.. .++|+.|++++|++++..|..+..+++|++|+|++|++.+.+|..+..++
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 11245677777777765444332 46799999999999999999999999999999999999999999999999
Q ss_pred CCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCCcCCCCCC
Q 048443 377 NLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 377 ~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~np~~c~~~ 429 (486)
+|++|++++|. +++|+.|++++|++++.+|.. ..+..+..+++.+|++.+..|
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999998 568999999999999999976 456678888899999876444
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=310.20 Aligned_cols=387 Identities=22% Similarity=0.191 Sum_probs=316.0
Q ss_pred CCcccccCcccceeeeeh-hcc--------CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccC
Q 048443 1 EKRCLCSELTRLTILLFY-LMT--------SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGS 70 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~-~~~--------~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~ 70 (486)
|+.|.|. +.+-.|+.. +.. -.|+..+.|+ ++|.++..-+..|.++++|+.+.+.+|.+ ..+|.....
T Consensus 47 pa~c~c~--~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~ 123 (873)
T KOG4194|consen 47 PATCPCN--TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHE 123 (873)
T ss_pred CCcCCCC--ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccccccc
Confidence 5566665 344444433 222 2356677788 77777777778899999999999999994 567766666
Q ss_pred CCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcccc
Q 048443 71 LSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWIC 149 (486)
Q Consensus 71 l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~ 149 (486)
..+|+.|+|. +|.|+.+-.+.+.. ++.|+.||||.|.|+++|. ..|. -.++++|+|++|.|+....+.|.
T Consensus 124 sghl~~L~L~-~N~I~sv~se~L~~--l~alrslDLSrN~is~i~~------~sfp~~~ni~~L~La~N~It~l~~~~F~ 194 (873)
T KOG4194|consen 124 SGHLEKLDLR-HNLISSVTSEELSA--LPALRSLDLSRNLISEIPK------PSFPAKVNIKKLNLASNRITTLETGHFD 194 (873)
T ss_pred ccceeEEeee-ccccccccHHHHHh--HhhhhhhhhhhchhhcccC------CCCCCCCCceEEeecccccccccccccc
Confidence 6779999999 99999988888888 9999999999999998763 2233 57899999999999988888999
Q ss_pred CCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCE
Q 048443 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEI 229 (486)
Q Consensus 150 ~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 229 (486)
++.+|.+|.|+.|+|+...+..|.+++. |+.|+|..|+|.-.---.|.++++|+.|.|..|.+...-..+|..+.++++
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~-L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPK-LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcch-hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 9999999999999999666667777998 999999999997665667999999999999999999777889999999999
Q ss_pred EEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCc
Q 048443 230 SDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQND 309 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (486)
|+|..|++......|+.+++.|+.|++++| .+..|....++.+.+|+.+++++|....--++.
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N---aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s-------------- 336 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYN---AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS-------------- 336 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchh---hhheeecchhhhcccceeEeccccccccCChhH--------------
Confidence 999999999989999999999999999999 677777677888889998888888432211111
Q ss_pred ceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch---hccCCCCCCEEeCCCC
Q 048443 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS---CLGSLTNLESLDLSKN 386 (486)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N 386 (486)
...+..|++|.|++|+++..--..|..+++|++|||++|.|+..+.+ .|.++++|+.|++.+|
T Consensus 337 --------------f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 337 --------------FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred --------------HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 11246699999999999877777899999999999999998865544 5788999999999999
Q ss_pred C-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCCCC
Q 048443 387 R-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLP 431 (486)
Q Consensus 387 ~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~~~ 431 (486)
+ +..|++||+.+|.+..+-|....-..+..+-+..-.++|||.+.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 9 66889999999999877776533335666777788899988653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=279.38 Aligned_cols=340 Identities=21% Similarity=0.144 Sum_probs=284.2
Q ss_pred cccceeeeehhccCCC------hhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCC
Q 048443 9 LTRLTILLFYLMTSDS------PFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82 (486)
Q Consensus 9 l~~l~~~~~~~~~~~~------~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~ 82 (486)
...|+++.+.+-.-++ |.|+.+.-.+|....||.......+|+.|+|.+|.|..+-.+.+..++.|++|||+ .
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS-r 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS-R 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh-h
Confidence 3457777776544433 44444446677777899666667789999999999999888999999999999999 9
Q ss_pred CcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcC
Q 048443 83 MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSD 161 (486)
Q Consensus 83 n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 161 (486)
|.|+.+....|.. -.++++|+|++|.|+.+. ...|. +.+|.+|.|+.|+++...+..|..+++|+.|+|..
T Consensus 159 N~is~i~~~sfp~--~~ni~~L~La~N~It~l~------~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 159 NLISEIPKPSFPA--KVNIKKLNLASNRITTLE------TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred chhhcccCCCCCC--CCCceEEeeccccccccc------cccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 9999776677766 689999999999999763 23444 78999999999999977777889999999999999
Q ss_pred CcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCC
Q 048443 162 NNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241 (486)
Q Consensus 162 N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 241 (486)
|+|....-..|.++++ |+.|.+..|.|.......|..+.++++|+|+.|+++..-..++.++++|+.|++++|.|..+-
T Consensus 231 N~irive~ltFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred cceeeehhhhhcCchh-hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 9998555677888887 999999999999998999999999999999999999877889999999999999999999888
Q ss_pred CccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcc
Q 048443 242 PIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMM 321 (486)
Q Consensus 242 ~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 321 (486)
+......++|+.|++++| .+..+++..|..+..|+.+.++.|....-.+..+.
T Consensus 310 ~d~WsftqkL~~LdLs~N---~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~------------------------ 362 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSN---RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV------------------------ 362 (873)
T ss_pred cchhhhcccceeEecccc---ccccCChhHHHHHHHhhhhcccccchHHHHhhHHH------------------------
Confidence 888899999999999999 78889999999999999999999854322222221
Q ss_pred ccCcccCcccEEEcccccccccC---ccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 322 THDKIPDILKGIILSSNRFDGEM---PTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 322 ~~~~~~~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
.+.+|++|||++|.++..+ ...|.++++|+.|.|.+|+|..+...+|.++++|++|||.+|.+.
T Consensus 363 ----~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 363 ----GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ----HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 2467999999999987644 345788999999999999999666668999999999999999843
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-32 Score=248.70 Aligned_cols=364 Identities=25% Similarity=0.338 Sum_probs=229.0
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
++|++++.+.+++.++.++|.+ ...|++++.+-.|+.++.. +|+++ ..|++++. +.+|..|++.+|+++..|
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~~~-~N~i~-slp~~~~~--~~~l~~l~~~~n~l~~l~--- 176 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLDAT-NNQIS-SLPEDMVN--LSKLSKLDLEGNKLKALP--- 176 (565)
T ss_pred hccHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhhcc-ccccc-cCchHHHH--HHHHHHhhccccchhhCC---
Confidence 3555566666666666666663 3344555566666666665 56655 34555555 566666666666666542
Q ss_pred CCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 119 ~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
|+.+.++.|++||...|-++ .+|..++.+.+|+.|+|..|+|. .+| .|+.... |++|+++.|.|.....+...
T Consensus 177 ---~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~-L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 177 ---ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSL-LKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred ---HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHH-HHHHHhcccHHHhhHHHHhc
Confidence 22222677788888777777 67777888888888888888887 566 6677666 88888888877644444445
Q ss_pred CCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhc----
Q 048443 199 NGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQC---- 274 (486)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~---- 274 (486)
.++++..||+..|+++ ..|+.+.-+.+|++||+++|.|+ ..|..++++ .|+.|.+.+|- ...|-.++.++
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP---lrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP---LRTIRREIISKGTQE 323 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc---hHHHHHHHHcccHHH
Confidence 7888888888888887 67887878888888888888887 567778888 78888877752 11111111110
Q ss_pred -cccccc----cccccchhccccccc------------------cccccccccCC---------CCcceEEeecCCCccc
Q 048443 275 -WNAMKF----ANSSQLRYMENFLSS------------------YFSFDFYRYFP---------QNDYSITMSNEGQMMT 322 (486)
Q Consensus 275 -l~~L~~----l~~~~~~~~~~~~~~------------------~~~~~~~~~~~---------~~~~~l~~~~~~~~~~ 322 (486)
++.|+. -.+++.+........ .......+.+| .-+..++++.+.+...
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh
Confidence 000100 000110000000000 00000111111 1234455555555443
Q ss_pred cCcc---cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC------------
Q 048443 323 HDKI---PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR------------ 387 (486)
Q Consensus 323 ~~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~------------ 387 (486)
+... -..++.++++.|.++ -+|..+..+++|..|+|++|.+. .+|..++.+..|+.||+|+|+
T Consensus 404 Pk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq 481 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQ 481 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHH
Confidence 3221 122344556666665 67788888899999999988888 788888888889999999988
Q ss_pred ----------------------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCC
Q 048443 388 ----------------------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425 (486)
Q Consensus 388 ----------------------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~ 425 (486)
+..|..||+.+|.+....|..+...++..+.+.||||-
T Consensus 482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 45788899999999865555578888888899999987
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-31 Score=254.62 Aligned_cols=358 Identities=23% Similarity=0.327 Sum_probs=199.5
Q ss_pred Chhhhhhc-cCCccc-ccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCC
Q 048443 24 SPFLDRLQ-RLSDFS-GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101 (486)
Q Consensus 24 ~~~l~~L~-~~n~~~-~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L 101 (486)
.|+++..+ ++|.++ +..|.++..+++++.|.|...+ ...+|+.++.+.+|+.|.++ +|++... -..+.. ++.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~-HN~L~~v-hGELs~--Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMA-HNQLISV-HGELSD--LPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhh-hhhhHhh-hhhhcc--chhh
Confidence 34444444 445555 3444455555555555554444 23444555555555555555 4444422 222333 4444
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccch-hhhcCCCC
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQC-LGNFSGGL 179 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-l~~~~~~L 179 (486)
+.+++.+|++..-. +|..+. +..|..||||+|+++ ..|..+..-.++-.|+||+|+|. .+|.. |.++.. |
T Consensus 81 Rsv~~R~N~LKnsG-----iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtD-L 152 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSG-----IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTD-L 152 (1255)
T ss_pred HHHhhhccccccCC-----CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHh-H
Confidence 55555555443111 222222 444555555555554 44444444444455555555554 23322 233333 4
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc-cCCCccccCCCCCCEEEcCc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN-DTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 258 (486)
-.||||+|++. .+|..+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.
T Consensus 153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 44555555443 22333444444555555555443211122233444444444443322 23444444555555555554
Q ss_pred cCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCc--ccCcccEEEcc
Q 048443 259 QLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK--IPDILKGIILS 336 (486)
Q Consensus 259 n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~L~~L~Ls 336 (486)
| ....+|.. +-.+.+|..++ ++++.++..-.. ...+|++|++|
T Consensus 232 N---~Lp~vPec-ly~l~~LrrLN-------------------------------LS~N~iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 232 N---NLPIVPEC-LYKLRNLRRLN-------------------------------LSGNKITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred c---CCCcchHH-Hhhhhhhheec-------------------------------cCcCceeeeeccHHHHhhhhhhccc
Confidence 4 33334433 22334444444 444444332211 24679999999
Q ss_pred cccccccCccchhccCCCCeeeCCCcccC-ccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCC
Q 048443 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQ-GHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPI 405 (486)
Q Consensus 337 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~ 405 (486)
.|+++ .+|..+..+++|+.|++.+|+++ +-+|+.++.+.+|+++..++|. +..|+.|.+++|++. +.
T Consensus 277 rNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 277 RNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred cchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-ec
Confidence 99999 89999999999999999999987 3688999999999999999998 568999999999998 56
Q ss_pred CCC-CCCCCCCCccccCCcCCCCCCCCC
Q 048443 406 PQA-NQFPTFGYSSFNGNSRLCGKPLPK 432 (486)
Q Consensus 406 p~~-~~~~~~~~~~~~~np~~c~~~~~~ 432 (486)
|.+ ..+..+..+++..||.+.-+|-+.
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 766 456678888999999998776553
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-29 Score=231.60 Aligned_cols=369 Identities=19% Similarity=0.180 Sum_probs=269.0
Q ss_pred CCcccccCcc-cceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCC
Q 048443 1 EKRCLCSELT-RLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSL 74 (486)
Q Consensus 1 ~~~c~c~~l~-~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 74 (486)
|+.|+|+... -.+.|...+. +..|+....++ ..|.|+...|.+|+.+++|++||||+|+|..+-|++|.++.+|
T Consensus 38 P~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l 117 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASL 117 (498)
T ss_pred CCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhh
Confidence 7899998743 2344544433 44556666666 8899999999999999999999999999999999999999999
Q ss_pred CeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCC
Q 048443 75 ERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSS 153 (486)
Q Consensus 75 ~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 153 (486)
.+|.+.++|+|+......|.+ +..|+.|.+.-|++.-+ ..+.+. ++++..|.+.+|.+.......|.++..
T Consensus 118 ~~Lvlyg~NkI~~l~k~~F~g--L~slqrLllNan~i~Ci------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 118 LSLVLYGNNKITDLPKGAFGG--LSSLQRLLLNANHINCI------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA 189 (498)
T ss_pred hHHHhhcCCchhhhhhhHhhh--HHHHHHHhcChhhhcch------hHHHHHHhhhcchhcccchhhhhhccccccchhc
Confidence 998887459999877788888 99999999999998865 334555 788888888888888444447888888
Q ss_pred CCEEECcCCcCc-------------------------------------------------------------cccc-ch
Q 048443 154 LYVLDLSDNNLS-------------------------------------------------------------GELL-QC 171 (486)
Q Consensus 154 L~~L~Ls~N~i~-------------------------------------------------------------~~~~-~~ 171 (486)
++++++..|.+- +..| .+
T Consensus 190 i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c 269 (498)
T KOG4237|consen 190 IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC 269 (498)
T ss_pred cchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH
Confidence 888888777411 0112 34
Q ss_pred hhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCC
Q 048443 172 LGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLEL 251 (486)
Q Consensus 172 l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 251 (486)
|..++. |+.|++++|+++.+.+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|.+|..+.+|
T Consensus 270 f~~L~~-L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPN-LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred Hhhccc-ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 666776 9999999999999999999999999999999999987777789999999999999999998899999999999
Q ss_pred CEEEcCccCCC----------------ccccCChhhhhccccccccccccch---hccccccccccccccccCCC----C
Q 048443 252 NILVLIQQLPC----------------FMGKLPSKYFQCWNAMKFANSSQLR---YMENFLSSYFSFDFYRYFPQ----N 308 (486)
Q Consensus 252 ~~L~l~~n~~~----------------~~~~ip~~~~~~l~~L~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~----~ 308 (486)
..|++-.|--+ ..+..|-. .=..++.+++++.. ...... +..+-.....-|+ .
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq---~p~~~~~~~~~dv~~~~~~c~~~-ee~~~~~s~~cP~~c~c~ 424 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ---SPGFVRQIPISDVAFGDFRCGGP-EELGCLTSSPCPPPCTCL 424 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCCCCCCCCCC---CCchhccccchhccccccccCCc-cccCCCCCCCCCCCcchh
Confidence 99998775311 01111100 00112222222221 111100 0000000111111 1
Q ss_pred cceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 309 DYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
.+...++++.+...+..+|...+++++.+|.++ .+|.. .+++| .+|+++|++...--..|.++++|.+|-|++|
T Consensus 425 ~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 425 DTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 233456677777777778888999999999998 77776 67778 8999999998555557888888888888876
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-30 Score=246.65 Aligned_cols=353 Identities=21% Similarity=0.223 Sum_probs=218.2
Q ss_pred cCcccceeeeehhccCCCh-------hhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTSDSP-------FLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~~~~-------~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
.-.+-.|.+++.+-...+| .++.|.-+..=...+|+.++.+.+|++|.+++|++..+ -..++.++.|+.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 3344556666654444433 22333333333456788888888888888888886543 356778888888888
Q ss_pred CCCCccc-ccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEE
Q 048443 80 FPPMKIH-GNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVL 157 (486)
Q Consensus 80 ~~~n~i~-~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 157 (486)
. +|++. .-+|..++. +..|+.||||+|++.+.|. ... .+++-.|+||+|+|..+....|.+++.|-.|
T Consensus 86 R-~N~LKnsGiP~diF~--l~dLt~lDLShNqL~EvP~-------~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 86 R-DNNLKNSGIPTDIFR--LKDLTILDLSHNQLREVPT-------NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred h-ccccccCCCCchhcc--cccceeeecchhhhhhcch-------hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 8 77765 346777777 8888888888888888543 333 5777788888888884444456778888888
Q ss_pred ECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccc-cccCccCcCCCCCCEEEccCCc
Q 048443 158 DLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ-GKIPKSLANCAVLEISDLRNNQ 236 (486)
Q Consensus 158 ~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~ 236 (486)
|||+|++. .+|..+..+.. |++|.|++|.+....-..+..+++|+.|.+++.+=+ ..+|.++..+.+|..+|++.|.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSM-LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHhh-hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 88888887 67777777777 888888888775443344445555666666555422 2455566666666666666666
Q ss_pred cccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeec
Q 048443 237 INDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSN 316 (486)
Q Consensus 237 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (486)
+. ..|..+..+++|+.|++++| .+.++... ...+.+++.++++.|.... ..... +.+ +.+..+...+
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N---~iteL~~~-~~~W~~lEtLNlSrNQLt~-LP~av------cKL-~kL~kLy~n~ 300 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGN---KITELNMT-EGEWENLETLNLSRNQLTV-LPDAV------CKL-TKLTKLYANN 300 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcC---ceeeeecc-HHHHhhhhhhccccchhcc-chHHH------hhh-HHHHHHHhcc
Confidence 64 45666666666666666665 33333222 2334555555555552210 00000 000 0000111111
Q ss_pred CCCc-cccCc---ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 317 EGQM-MTHDK---IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 317 ~~~~-~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+.+. ..+++ .+..|+++..++|.+. .+|+.+..+..|+.|.|+.|++. .+|+++.-++.|+.||+..|+
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 1111 11111 1455777777777776 77888888888888888888877 777888778888888888877
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-29 Score=248.26 Aligned_cols=377 Identities=25% Similarity=0.326 Sum_probs=220.1
Q ss_pred hhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEc
Q 048443 27 LDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNL 106 (486)
Q Consensus 27 l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~L 106 (486)
|++|+-.|+..+..|..+..+.+|+.|.++.|.| ...|.+...+.+|+++.|. +|.+. ..|..+.. +++|++||+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~~~~l~~lnL~-~n~l~-~lP~~~~~--lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI-RSVPSSCSNMRNLQYLNLK-NNRLQ-SLPASISE--LKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhH-hhCchhhhhhhcchhheec-cchhh-cCchhHHh--hhccccccc
Confidence 4555555666666676777777777777777764 3455666677777777776 66555 56777776 777777777
Q ss_pred cCCCCCCCCC-CCCC-----CC-------cccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhh
Q 048443 107 SKNYFPRFDQ-HPTV-----LP-------WTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLG 173 (486)
Q Consensus 107 s~N~l~~~~~-l~~l-----~p-------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~ 173 (486)
|+|.+..+|. +..+ .. ..++-..++.+++..|.+.+.++..+..+.+ .|||++|.+.......+.
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhcc
Confidence 7777776554 1111 00 0011122555555555555555555555444 456666555411111110
Q ss_pred h-----------------cCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCc
Q 048443 174 N-----------------FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQ 236 (486)
Q Consensus 174 ~-----------------~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 236 (486)
. .+ +++.|+.++|.++...+. ....+|+++++++|+++ .+|+++..+.+|+.++..+|+
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~-~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGP-SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred chhhhhhhhcccceEEecCc-chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 0 01 244444444444422211 11245666666666666 445666666666666666666
Q ss_pred ccc----------------------CCCccccCCCCCCEEEcCccCCCccccCChhhhhcccc-ccccccccchhccccc
Q 048443 237 IND----------------------TFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNA-MKFANSSQLRYMENFL 293 (486)
Q Consensus 237 l~~----------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~-L~~l~~~~~~~~~~~~ 293 (486)
++. .+|.....++.|+.|++..| ..+.+|...+..... +..++.+.+..-. ..
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N---~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp 351 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN---NLPSLPDNFLAVLNASLNTLNVSSNKLST-LP 351 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc---cccccchHHHhhhhHHHHHHhhhhccccc-cc
Confidence 531 34555555666677777666 556666655554443 4444444332100 00
Q ss_pred cccccccccccCCCCcceEEeecCCCccccCc---ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch
Q 048443 294 SSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK---IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS 370 (486)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 370 (486)
. ........+..+.+.+|.+...... ...+|+.|+|++|++.......+.++..|++|+||+|+++ .+|+
T Consensus 352 -~-----~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 352 -S-----YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred -c-----ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 0 0000112233444555555444322 3577888888888887444445777888888888888888 7777
Q ss_pred hccCCCCCCEEeCCCCC---------CCCCCEEeccCCccc-cCCCCCCCCCCCCCccccCCcCC
Q 048443 371 CLGSLTNLESLDLSKNR---------LTFLEFFNATHNNLT-GPIPQANQFPTFGYSSFNGNSRL 425 (486)
Q Consensus 371 ~~~~l~~L~~L~Ls~N~---------l~~L~~L~ls~N~l~-~~~p~~~~~~~~~~~~~~~np~~ 425 (486)
.+..+..|++|...+|+ +++|+.+|+|.|+|+ ..+|.....++++.+++.||+++
T Consensus 425 tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 77888888888888877 668899999999997 45555545578889999999964
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-29 Score=230.41 Aligned_cols=332 Identities=27% Similarity=0.357 Sum_probs=209.1
Q ss_pred hhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEE
Q 048443 26 FLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLN 105 (486)
Q Consensus 26 ~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~ 105 (486)
.+..|+..|+-...+|+++..+.++..+++.+|++....|..+. ++.|++||.. .|-+. .+|..++. +.+|+.|+
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~-~N~L~-tlP~~lg~--l~~L~~Ly 212 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN-SNLLE-TLPPELGG--LESLELLY 212 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc-hhhhh-cCChhhcc--hhhhHHHH
Confidence 34445533333344666788888888888888887665555555 8888888876 65554 67888888 88888888
Q ss_pred ccCCCCCCCCCCCCC---------------CCcccc--cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccc
Q 048443 106 LSKNYFPRFDQHPTV---------------LPWTTL--STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGEL 168 (486)
Q Consensus 106 Ls~N~l~~~~~l~~l---------------~p~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 168 (486)
|.+|+|..+|.++.- +|+... ++++.+||+.+|+++ ..|+.+.-+.+|+.||+|+|.|+ .+
T Consensus 213 L~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~L 290 (565)
T KOG0472|consen 213 LRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SL 290 (565)
T ss_pred hhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cC
Confidence 888888876653211 333333 556666666666666 55666666666666666666666 45
Q ss_pred cchhhhcCCCCcEEEccCcccccc--------------------------------------CCccc---cCCCCccEEE
Q 048443 169 LQCLGNFSGGLSVLSLQGKNFFGT--------------------------------------TPDTF---MNGSDLRMVD 207 (486)
Q Consensus 169 ~~~l~~~~~~L~~L~L~~n~i~~~--------------------------------------~~~~~---~~l~~L~~L~ 207 (486)
|..++++ . |+.|-+.+|.+..+ .+..| ..+.+.+.|+
T Consensus 291 p~sLgnl-h-L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 291 PYSLGNL-H-LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred Ccccccc-e-eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 5566665 2 66666666654211 00001 1123345555
Q ss_pred CcCCccccccCccCcCCCC---CCEEEccCCccccCCCccccCCCCCC-EEEcCccCCCccccCChhhhhcccccccccc
Q 048443 208 LSHNLLQGKIPKSLANCAV---LEISDLRNNQINDTFPIWLGSLLELN-ILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~ 283 (486)
+++-+++ .+|.....-.. ....+++.|++. .+|..+..+..+. .+.+++| .++.+|.. ++.+++++++++
T Consensus 369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn---~isfv~~~-l~~l~kLt~L~L 442 (565)
T KOG0472|consen 369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN---KISFVPLE-LSQLQKLTFLDL 442 (565)
T ss_pred ccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC---ccccchHH-HHhhhcceeeec
Confidence 5555555 34443332222 567788888876 4565555555443 3444554 45555554 677788888888
Q ss_pred ccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcc
Q 048443 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
++|-. . .+|.+.. . .-.|+.|++|.|+|. .+|..+..+..++.+-.++|+
T Consensus 443 ~NN~L-n-------------~LP~e~~--------------~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 443 SNNLL-N-------------DLPEEMG--------------S-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred ccchh-h-------------hcchhhh--------------h-hhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 87722 1 1111100 0 234888888888887 778877777777777777788
Q ss_pred cCccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccc
Q 048443 364 LQGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLT 402 (486)
Q Consensus 364 l~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~ 402 (486)
+....|+.+.++.+|++|||.+|. +++|++|++++|+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 887777778888888888888887 667888888888887
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=215.40 Aligned_cols=320 Identities=20% Similarity=0.241 Sum_probs=209.8
Q ss_pred cccccCCcCCCCCC-CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC-CC
Q 048443 35 DFSGQIPPSLGNLN-QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY-FP 112 (486)
Q Consensus 35 ~~~~~~p~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~-l~ 112 (486)
++...+|..|..++ +|+.|++.++.+ ..+|..| ...+|++|++. ++++. .++..+.. +++|+.|+|+++. +.
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~-~s~l~-~L~~~~~~--l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQ-GSKLE-KLWDGVHS--LTGLRNIDLRGSKNLK 648 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEECc-Ccccc-cccccccc--CCCCCEEECCCCCCcC
Confidence 34455676676654 588888887774 4556666 45778888887 77776 45666666 7888888887764 44
Q ss_pred CCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccccc
Q 048443 113 RFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192 (486)
Q Consensus 113 ~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~ 192 (486)
.+| ....+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ .+.+ |+.|++++|.....
T Consensus 649 ~ip-------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 649 EIP-------DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-LYRLNLSGCSRLKS 719 (1153)
T ss_pred cCC-------ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-CCEEeCCCCCCccc
Confidence 433 21126778888888876555777778888888888888765444566554 4554 88888887766555
Q ss_pred CCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc-------cCCCccccCCCCCCEEEcCccCCCccc
Q 048443 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN-------DTFPIWLGSLLELNILVLIQQLPCFMG 265 (486)
Q Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~ 265 (486)
.|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++... ...+..+...++|+.|+++++. ...
T Consensus 720 ~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~ 792 (1153)
T PLN03210 720 FPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLV 792 (1153)
T ss_pred cccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC--Ccc
Confidence 5532 356777888888776 455543 4566666666553211 1112222334567777776653 455
Q ss_pred cCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCc
Q 048443 266 KLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMP 345 (486)
Q Consensus 266 ~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 345 (486)
.+|.. +..+++|+.++++++..+...... ...+.+..++++++.....++..+.+++.|+|++|.++ .+|
T Consensus 793 ~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~--------~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 793 ELPSS-IQNLHKLEHLEIENCINLETLPTG--------INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVP 862 (1153)
T ss_pred ccChh-hhCCCCCCEEECCCCCCcCeeCCC--------CCccccCEEECCCCCccccccccccccCEeECCCCCCc-cCh
Confidence 56655 566777777777665433221111 01234556666665555555555678999999999998 788
Q ss_pred cchhccCCCCeeeCCCc-ccCccCchhccCCCCCCEEeCCCCC
Q 048443 346 TSIANLKGLQVLGLASN-NLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 346 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.++..+++|+.|++++| .+. .+|..+..+++|+.+++++|.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 88999999999999985 455 677778889999999999886
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-26 Score=227.63 Aligned_cols=357 Identities=24% Similarity=0.296 Sum_probs=247.8
Q ss_pred CCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
.+.+..+|+.||+++|+ .+..|..+..+.+|+.|.++ .|.|. ..|.+..+ +.+|++|+|.+|.+... |
T Consensus 40 ~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s-~n~i~-~vp~s~~~--~~~l~~lnL~~n~l~~l-------P 107 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLS-RNYIR-SVPSSCSN--MRNLQYLNLKNNRLQSL-------P 107 (1081)
T ss_pred HhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccc-hhhHh-hCchhhhh--hhcchhheeccchhhcC-------c
Confidence 44445669999999999 56788899999999999999 99998 56788888 99999999999999874 5
Q ss_pred cccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCC-------------------cCcccccchhhhcCCCCc-E
Q 048443 123 WTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN-------------------NLSGELLQCLGNFSGGLS-V 181 (486)
Q Consensus 123 ~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-------------------~i~~~~~~~l~~~~~~L~-~ 181 (486)
..+. +.+|+.|++++|++. .+|..+..++.++.++.++| .+.+.++.++.. ++ .
T Consensus 108 ~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~----l~~~ 182 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN----LTHQ 182 (1081)
T ss_pred hhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh----hhee
Confidence 5666 899999999999998 77766666655555555555 444444444433 34 4
Q ss_pred EEccCccccccCCccc-----------------cCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCcc
Q 048443 182 LSLQGKNFFGTTPDTF-----------------MNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW 244 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~-----------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 244 (486)
|+|.+|++....-..+ ...++++.|+.++|.++...+. ..-.+|++++++.|++.+ .|.|
T Consensus 183 ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~w 259 (1081)
T KOG0618|consen 183 LDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEW 259 (1081)
T ss_pred eecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHH
Confidence 8888888762111110 1235567777777777633222 224689999999999985 5599
Q ss_pred ccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchh--ccccccc-------cccccccccCC--------C
Q 048443 245 LGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY--MENFLSS-------YFSFDFYRYFP--------Q 307 (486)
Q Consensus 245 ~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~--~~~~~~~-------~~~~~~~~~~~--------~ 307 (486)
++.+.+|+.+....| ....+|..++ ...+|..+...+|+. ++...+. .+..+.+..+| .
T Consensus 260 i~~~~nle~l~~n~N---~l~~lp~ri~-~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 260 IGACANLEALNANHN---RLVALPLRIS-RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHhcccceEecccch---hHHhhHHHHh-hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 999999999999987 4566666643 334455555444422 1111110 01111111111 1
Q ss_pred CcceEEeecCCCcccc---CcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCC
Q 048443 308 NDYSITMSNEGQMMTH---DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS 384 (486)
Q Consensus 308 ~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 384 (486)
.+..+..+.+.+.... ....+.|+.|.+.+|.+++..-+.+.++++|+.|+|++|++...+...+.++..|++|+||
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 1222222222222111 1125668999999999998888889999999999999999995555688999999999999
Q ss_pred CCCC----------CCCCEEeccCCccccCCCCCCCCCCCCCccccCCcC
Q 048443 385 KNRL----------TFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSR 424 (486)
Q Consensus 385 ~N~l----------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~ 424 (486)
+|++ ..|++|...+|++. ..|...+...+..++++.|..
T Consensus 416 GNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 416 GNKLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred cchhhhhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence 9994 46789999999998 567777777777777766543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-22 Score=203.72 Aligned_cols=248 Identities=25% Similarity=0.327 Sum_probs=142.7
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCC
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
.+.++ .+|+.+. ++|+.|++++|++.. +|. ..++|++|+++ +|+++. +|.. .++|+.|++++|.++
T Consensus 210 ~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs-~N~Lts-LP~l-----p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 210 ESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVS-GNQLTS-LPVL-----PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEec-CCccCc-ccCc-----ccccceeeccCCchh
Confidence 34444 3555554 367777777777554 342 24667777777 777764 3431 456777777777776
Q ss_pred CCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccccc
Q 048443 113 RFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192 (486)
Q Consensus 113 ~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~ 192 (486)
.+|. + ..+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|. .+..|+.|++++|.+++
T Consensus 276 ~Lp~----l-----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 276 HLPA----L-----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred hhhh----c-----hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCC----CcccccccccccCcccc-
Confidence 6543 1 245667777777776 44432 3567777777777763 332 12236677777777754
Q ss_pred CCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhh
Q 048443 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYF 272 (486)
Q Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~ 272 (486)
+|.. ..+|+.|+|++|+++ .+|.. ..+|+.|++++|++.. +|.. ..+|+.|++++| .+..+|..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N---~Lt~LP~l-- 400 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGN---RLTSLPVL-- 400 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCC---cccCCCCc--
Confidence 3321 136777777777776 34432 2456667777777663 3332 245666666665 22223321
Q ss_pred hccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccC
Q 048443 273 QCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLK 352 (486)
Q Consensus 273 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~ 352 (486)
++.|+.|++++|.++ .+|... .
T Consensus 401 ------------------------------------------------------~s~L~~LdLS~N~Ls-sIP~l~---~ 422 (788)
T PRK15387 401 ------------------------------------------------------PSELKELMVSGNRLT-SLPMLP---S 422 (788)
T ss_pred ------------------------------------------------------ccCCCEEEccCCcCC-CCCcch---h
Confidence 234666666666666 344422 3
Q ss_pred CCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCC
Q 048443 353 GLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL 388 (486)
Q Consensus 353 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 388 (486)
+|+.|++++|+|+ .+|..+..+++|+.|+|++|++
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 4566666666666 5566666666666666666653
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=213.60 Aligned_cols=296 Identities=18% Similarity=0.161 Sum_probs=178.9
Q ss_pred CcccccCCCCCCeeccCCCCc------ccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeeccc
Q 048443 64 LPASIGSLSSLERLDTFPPMK------IHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISK 137 (486)
Q Consensus 64 ~~~~~~~l~~L~~L~L~~~n~------i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~ 137 (486)
.+.+|.++++|+.|.+. .+. +...+|..+... ..+|+.|++.++.+..+| ..+...+|++|++++
T Consensus 550 ~~~aF~~m~~L~~L~~~-~~~~~~~~~~~~~lp~~~~~l-p~~Lr~L~~~~~~l~~lP-------~~f~~~~L~~L~L~~ 620 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFY-TKKWDQKKEVRWHLPEGFDYL-PPKLRLLRWDKYPLRCMP-------SNFRPENLVKLQMQG 620 (1153)
T ss_pred cHHHHhcCccccEEEEe-cccccccccceeecCcchhhc-CcccEEEEecCCCCCCCC-------CcCCccCCcEEECcC
Confidence 44567788888888775 432 333466666551 246888888888777744 344467888888888
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCcccccc
Q 048443 138 NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI 217 (486)
Q Consensus 138 n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (486)
|++. .++..+..+++|+.|+|+++.....+| .+..+++ |+.|++++|.....+|..+..+++|+.|++++|...+.+
T Consensus 621 s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 621 SKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 8877 567777778888888888765443555 3566665 888888887776777777888888888888876544466
Q ss_pred CccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccc
Q 048443 218 PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYF 297 (486)
Q Consensus 218 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 297 (486)
|..+ ++++|++|++++|......|.. ..+|+.|+++++ .+..+|... .+++|..+.+..+.... .....
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n---~i~~lP~~~--~l~~L~~L~l~~~~~~~-l~~~~- 766 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET---AIEEFPSNL--RLENLDELILCEMKSEK-LWERV- 766 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC---ccccccccc--cccccccccccccchhh-ccccc-
Confidence 6554 6788888888887655444432 356778888776 455666542 35555555554431100 00000
Q ss_pred cccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCC
Q 048443 298 SFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377 (486)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 377 (486)
..+.......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ ++++
T Consensus 767 -------------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s 826 (1153)
T PLN03210 767 -------------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES 826 (1153)
T ss_pred -------------------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence 00000001113456666666665554566666666666666666654333455443 4556
Q ss_pred CCEEeCCCCC--------CCCCCEEeccCCccc
Q 048443 378 LESLDLSKNR--------LTFLEFFNATHNNLT 402 (486)
Q Consensus 378 L~~L~Ls~N~--------l~~L~~L~ls~N~l~ 402 (486)
|+.|++++|. .++|+.|++++|.++
T Consensus 827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred cCEEECCCCCccccccccccccCEeECCCCCCc
Confidence 6666666554 234555555555554
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=200.15 Aligned_cols=253 Identities=25% Similarity=0.285 Sum_probs=177.4
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccccc
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS 127 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~ 127 (486)
..-..|+++.|.+. .+|..+. ++|+.|++. +|+++. +|. . +++|++|++++|+++.+|. . .
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~-~N~Lt~-LP~---l--p~~Lk~LdLs~N~LtsLP~----l-----p 261 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIP-DNNLTS-LPA---L--PPELRTLEVSGNQLTSLPV----L-----P 261 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEcc-CCcCCC-CCC---C--CCCCcEEEecCCccCcccC----c-----c
Confidence 34567888888866 5666664 478888888 888874 453 2 6788888888888887653 1 3
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++|++|++++|.++ .+|.. ..+|+.|++++|+++ .+|.. .+ +|+.|++++|++++. |.. ..+|+.|+
T Consensus 262 ~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~-~L~~LdLS~N~L~~L-p~l---p~~L~~L~ 328 (788)
T PRK15387 262 PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PP-GLQELSVSDNQLASL-PAL---PSELCKLW 328 (788)
T ss_pred cccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---cc-ccceeECCCCccccC-CCC---cccccccc
Confidence 57888888888887 45543 246778888888887 44542 23 388888888888753 332 24577788
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.++ .+|.. ..+|++|++++|++++ +|.. ..+|+.|++++|. +..+|.
T Consensus 329 Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~---L~~LP~------------------ 379 (788)
T PRK15387 329 AYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNR---LTSLPA------------------ 379 (788)
T ss_pred cccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccc---cccCcc------------------
Confidence 8888887 35531 2478888888888874 3332 2355666666552 222221
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
.+..|+.|++++|.|+ .+|.. .++|+.|++++|+++ .
T Consensus 380 --------------------------------------l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 380 --------------------------------------LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred --------------------------------------cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 1245999999999999 46653 368999999999999 4
Q ss_pred CchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~ 407 (486)
+|.. ..+|+.|++++|+ +++|+.+++++|+|++.+|.
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 6653 3478899999999 45678899999999987765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=194.27 Aligned_cols=247 Identities=24% Similarity=0.337 Sum_probs=169.6
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccccc
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS 127 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~ 127 (486)
.+.+.|+++++++.. +|..+. +.|+.|+++ +|+++ .+|..+ .++|++|++++|.++.+|. .+ .
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls-~N~Lt-sLP~~l----~~nL~~L~Ls~N~LtsLP~-------~l-~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILD-NNELK-SLPENL----QGNIKTLYANSNQLTSIPA-------TL-P 240 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEec-CCCCC-cCChhh----ccCCCEEECCCCccccCCh-------hh-h
Confidence 356788888887653 555443 578888888 88887 456554 4578888888888887543 11 3
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
.+|+.|+|++|+++ .+|..+. .+|+.|++++|+++ .+|..+. . +|+.|++++|+++. +|..+. ++|+.|+
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~-sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E-ELRYLSVYDNSIRT-LPAHLP--SGITHLN 310 (754)
T ss_pred ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C-CCcEEECCCCcccc-Ccccch--hhHHHHH
Confidence 56888888888887 5666554 47888888888887 4665543 2 38888888888875 343332 4678888
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.++ .+|..+ .++|++|++++|.+++ +|..+. ++|+.|++++| .+..+|..
T Consensus 311 Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N---~L~~LP~~----------------- 364 (754)
T PRK15370 311 VQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN---QITVLPET----------------- 364 (754)
T ss_pred hcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCC---CCCcCChh-----------------
Confidence 8888887 355433 2578888888888774 444432 57777777776 22334432
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
.++.|+.|++++|.++ .+|..+. ..|+.|++++|++. .
T Consensus 365 --------------------------------------lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~ 402 (754)
T PRK15370 365 --------------------------------------LPPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-R 402 (754)
T ss_pred --------------------------------------hcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-c
Confidence 1246889999999998 5666554 36889999999998 5
Q ss_pred Cchhc----cCCCCCCEEeCCCCCCC
Q 048443 368 IPSCL----GSLTNLESLDLSKNRLT 389 (486)
Q Consensus 368 ~~~~~----~~l~~L~~L~Ls~N~l~ 389 (486)
+|..+ ..++.+..|++.+|+++
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55543 34578888999998853
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-22 Score=183.89 Aligned_cols=282 Identities=18% Similarity=0.207 Sum_probs=183.5
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccC-CCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSK-NYFPRFDQH 117 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~-N~l~~~~~l 117 (486)
++|..+. +....++|..|+|..+.+.+|+.+++|+.|||+ +|+|+.+-|++|.+ +++|..|-+.+ |+|+++|+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~G--L~~l~~Lvlyg~NkI~~l~k- 133 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKG--LASLLSLVLYGNNKITDLPK- 133 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhh--hHhhhHHHhhcCCchhhhhh-
Confidence 5676665 577889999999999989999999999999999 99999999999999 89887775554 88998754
Q ss_pred CCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc------
Q 048443 118 PTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF------ 190 (486)
Q Consensus 118 ~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~------ 190 (486)
..|. +..++.|.+.-|++.-....+|..+++|..|.+-+|.+...--..|..+.. ++.+++..|.+.
T Consensus 134 -----~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 134 -----GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-IKTLHLAQNPFICDCNLP 207 (498)
T ss_pred -----hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc-cchHhhhcCccccccccc
Confidence 3444 788888888888888777788888899988888888887433346777766 888888877732
Q ss_pred ------ccCCccccCCCCccEEECcCCccccccCccCcCC-CCCCEEEccCCccccCCC-ccccCCCCCCEEEcCccCCC
Q 048443 191 ------GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANC-AVLEISDLRNNQINDTFP-IWLGSLLELNILVLIQQLPC 262 (486)
Q Consensus 191 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~~~ 262 (486)
...|..+++.....-..+.++++...-+..|... ..+..=-.+.+...+..| ..|..+++|+.|++++|
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--- 284 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--- 284 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC---
Confidence 1222233333333333334444432222222211 111000111111112222 23444444444444444
Q ss_pred ccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc
Q 048443 263 FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342 (486)
Q Consensus 263 ~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 342 (486)
.+..|....|.. ...+++|.|..|++..
T Consensus 285 ~i~~i~~~aFe~----------------------------------------------------~a~l~eL~L~~N~l~~ 312 (498)
T KOG4237|consen 285 KITRIEDGAFEG----------------------------------------------------AAELQELYLTRNKLEF 312 (498)
T ss_pred ccchhhhhhhcc----------------------------------------------------hhhhhhhhcCcchHHH
Confidence 233333332222 2446777777777775
Q ss_pred cCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 343 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.-...|.+++.|+.|+|.+|+|+...|.+|..+.+|.+|.|-.|+
T Consensus 313 v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 313 VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 556667778888888888888887777788888888888887777
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=186.03 Aligned_cols=236 Identities=21% Similarity=0.320 Sum_probs=135.3
Q ss_pred CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCC
Q 048443 73 SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLS 152 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 152 (486)
+...|+++ +++++. +|..+ .++|+.|++++|+++.+|. .+ .++|++|++++|+++ .+|..+. .
T Consensus 179 ~~~~L~L~-~~~Lts-LP~~I----p~~L~~L~Ls~N~LtsLP~-------~l-~~nL~~L~Ls~N~Lt-sLP~~l~--~ 241 (754)
T PRK15370 179 NKTELRLK-ILGLTT-IPACI----PEQITTLILDNNELKSLPE-------NL-QGNIKTLYANSNQLT-SIPATLP--D 241 (754)
T ss_pred CceEEEeC-CCCcCc-CCccc----ccCCcEEEecCCCCCcCCh-------hh-ccCCCEEECCCCccc-cCChhhh--c
Confidence 34556665 555552 44433 3456666666666665432 11 245666666666665 3444332 2
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEc
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL 232 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 232 (486)
+|+.|++++|.+. .+|..+. . +|+.|++++|++.. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s-~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--S-ALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNV 311 (754)
T ss_pred cccEEECcCCccC-cCChhHh--C-CCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHh
Confidence 5666666666665 4454433 1 26666666666653 343332 35666666666665 2343322 34555666
Q ss_pred cCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceE
Q 048443 233 RNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSI 312 (486)
Q Consensus 233 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (486)
++|.++. +|..+ .++|+.|++++| ....+|.
T Consensus 312 s~N~Lt~-LP~~l--~~sL~~L~Ls~N---~Lt~LP~------------------------------------------- 342 (754)
T PRK15370 312 QSNSLTA-LPETL--PPGLKTLEAGEN---ALTSLPA------------------------------------------- 342 (754)
T ss_pred cCCcccc-CCccc--cccceeccccCC---ccccCCh-------------------------------------------
Confidence 6666553 22222 134455554443 1111221
Q ss_pred EeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC---
Q 048443 313 TMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT--- 389 (486)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 389 (486)
..+++|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+|..+. ..|+.|++++|++.
T Consensus 343 ------------~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 343 ------------SLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLP 404 (754)
T ss_pred ------------hhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCc
Confidence 12356999999999998 5776553 68999999999999 5665554 36889999999843
Q ss_pred -----------CCCEEeccCCccc
Q 048443 390 -----------FLEFFNATHNNLT 402 (486)
Q Consensus 390 -----------~L~~L~ls~N~l~ 402 (486)
.+..+++.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 4567888888875
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-20 Score=176.34 Aligned_cols=204 Identities=22% Similarity=0.185 Sum_probs=99.2
Q ss_pred EeeCcCCCCC-CCCcccccCCCCCCeeccCCCCccccc----CCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 52 WLDLAFNNFL-RELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 52 ~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~~n~i~~~----~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
.|+|+++.+. ......|..+.+|++|+++ ++.++.. ++..+.. .++|++|+++++.+...+.....++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~-~~~l~~~~~~~i~~~l~~--~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLE-GNTLGEEAAKALASALRP--QPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeec-CCCCcHHHHHHHHHHHhh--CCCceEEeccccccCCcchHHHHHHHHHH
Confidence 3555555554 2333444555556666666 5555321 3333444 55566666666655421110000111122
Q ss_pred -cCccCeeecccCcccccCCccccCCCC---CCEEECcCCcCcc----cccchhhhc-CCCCcEEEccCcccccc----C
Q 048443 127 -STKIRHYLISKNNLTGEIPSWICNLSS---LYVLDLSDNNLSG----ELLQCLGNF-SGGLSVLSLQGKNFFGT----T 193 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~N~i~~----~~~~~l~~~-~~~L~~L~L~~n~i~~~----~ 193 (486)
+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+... +. |+.|++++|.+++. +
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~-L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA-LEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC-ceEEEcCCCcCCchHHHHH
Confidence 456666666666665444444444433 6666666666652 112233333 33 66666666666521 2
Q ss_pred CccccCCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCccccCC----CccccCCCCCCEEEcCcc
Q 048443 194 PDTFMNGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQINDTF----PIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~n 259 (486)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|+.|+++++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 22344555666666666666521 2223444456666666666664322 122334445555555443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-19 Score=171.04 Aligned_cols=265 Identities=23% Similarity=0.210 Sum_probs=181.1
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCC----CcccccCCCCCCeeccCCCCcccc------cCCchhccccCCCCcEEEccC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRE----LPASIGSLSSLERLDTFPPMKIHG------NIPKWLLNPSMKNFSYLNLSK 108 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~~n~i~~------~~p~~~~~~~l~~L~~L~Ls~ 108 (486)
..+..+..+.+|+.|+++++.+... ++..+...+.+++++++ .+.+.+ .++..+.. +++|+.|++++
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~-~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~ 90 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTK--GCGLQELDLSD 90 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc-ccccCCcchHHHHHHHHHHh--cCceeEEEccC
Confidence 3344566677799999999987543 45556677889999998 777662 23456666 88999999999
Q ss_pred CCCCCCCCCCCCCCcccc-cCc---cCeeecccCcccc----cCCccccCC-CCCCEEECcCCcCccc----ccchhhhc
Q 048443 109 NYFPRFDQHPTVLPWTTL-STK---IRHYLISKNNLTG----EIPSWICNL-SSLYVLDLSDNNLSGE----LLQCLGNF 175 (486)
Q Consensus 109 N~l~~~~~l~~l~p~~~~-~~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~Ls~N~i~~~----~~~~l~~~ 175 (486)
|.+... .+..+. +.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. .+..+...
T Consensus 91 ~~~~~~------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 91 NALGPD------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred CCCChh------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 988642 222232 334 9999999999873 233455667 8999999999999843 23345555
Q ss_pred CCCCcEEEccCcccccc----CCccccCCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCccccCCCccccC
Q 048443 176 SGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQINDTFPIWLGS 247 (486)
Q Consensus 176 ~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 247 (486)
.. |++|++++|.+.+. ++..+...++|++|++++|.+++. ++..+..+++|++|++++|.+.+.....+..
T Consensus 165 ~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 165 RD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred CC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 55 99999999998742 233455667999999999998643 3445677899999999999987422211110
Q ss_pred CCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCccc
Q 048443 248 LLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIP 327 (486)
Q Consensus 248 l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 327 (486)
. ++ ...
T Consensus 244 ~------------------~~--------------------------------------------------------~~~ 249 (319)
T cd00116 244 A------------------LL--------------------------------------------------------SPN 249 (319)
T ss_pred H------------------Hh--------------------------------------------------------ccC
Confidence 0 00 001
Q ss_pred CcccEEEcccccccc----cCccchhccCCCCeeeCCCcccCcc----CchhccCC-CCCCEEeCCCCC
Q 048443 328 DILKGIILSSNRFDG----EMPTSIANLKGLQVLGLASNNLQGH----IPSCLGSL-TNLESLDLSKNR 387 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~ 387 (486)
+.|+.|++++|.+++ .+...+..+++|+++++++|.+++. ....+... +.|+++++.+|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 347888888887752 2344556667888888888888854 33344444 677888877764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.4e-19 Score=142.70 Aligned_cols=155 Identities=24% Similarity=0.367 Sum_probs=78.2
Q ss_pred CCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcc
Q 048443 45 GNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT 124 (486)
Q Consensus 45 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~ 124 (486)
.++.+++.|.||+|++ ..+|..++.+.+|+.|+++ +|+|. .+|..+.. +++|+.|+++.|++.. .|..
T Consensus 30 f~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~-nnqie-~lp~~iss--l~klr~lnvgmnrl~~-------lprg 97 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLS-NNQIE-ELPTSISS--LPKLRILNVGMNRLNI-------LPRG 97 (264)
T ss_pred cchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcc-cchhh-hcChhhhh--chhhhheecchhhhhc-------Cccc
Confidence 3445555666666663 3444455555666666665 55555 34555555 5555555555555443 2334
Q ss_pred cc-cCccCeeecccCcccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 125 TL-STKIRHYLISKNNLTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 125 ~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
|+ ++.|+.|||.+|++.. ..|+.|..+..|+.|+|++|.+. .+|..++++.+ |+.|.+..|.+. ..|..+..+..
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~-lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN-LQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc-eeEEeeccCchh-hCcHHHHHHHH
Confidence 44 4555555555555443 34444555555555555555554 44444454444 555555444443 23344444444
Q ss_pred ccEEECcCCccc
Q 048443 203 LRMVDLSHNLLQ 214 (486)
Q Consensus 203 L~~L~L~~N~l~ 214 (486)
|++|.+.+|.++
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 444444444444
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-18 Score=142.42 Aligned_cols=162 Identities=25% Similarity=0.342 Sum_probs=120.0
Q ss_pred CCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccc
Q 048443 70 SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWI 148 (486)
Q Consensus 70 ~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~ 148 (486)
.+...+.|.|+ +|+++ .+|..++. +.+|+.|++++|+|+++| ..+. +++|+.|+++-|++. ..|..|
T Consensus 31 ~~s~ITrLtLS-HNKl~-~vppnia~--l~nlevln~~nnqie~lp-------~~issl~klr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLS-HNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELP-------TSISSLPKLRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred chhhhhhhhcc-cCcee-ecCCcHHH--hhhhhhhhcccchhhhcC-------hhhhhchhhhheecchhhhh-cCcccc
Confidence 45666777788 88887 45666777 888888888888887754 3444 678888888888877 778888
Q ss_pred cCCCCCCEEECcCCcCcc-cccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCC
Q 048443 149 CNLSSLYVLDLSDNNLSG-ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVL 227 (486)
Q Consensus 149 ~~l~~L~~L~Ls~N~i~~-~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 227 (486)
+.++.|+.|||.+|.+.. .+|..|+.+.. |+.|++++|.+. .+|.....+++|+.|.+..|.+- .+|..++.+..|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~t-lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTT-LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHH-HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 888888888888877753 56777777766 778888888874 56667778888888888888776 677778888888
Q ss_pred CEEEccCCccccCCCccccC
Q 048443 228 EISDLRNNQINDTFPIWLGS 247 (486)
Q Consensus 228 ~~L~L~~N~l~~~~~~~~~~ 247 (486)
+.|++.+|+++ ..|+.++.
T Consensus 176 relhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 176 RELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHhcccceee-ecChhhhh
Confidence 88888888876 44444443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=149.50 Aligned_cols=108 Identities=37% Similarity=0.639 Sum_probs=95.3
Q ss_pred cccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEecc
Q 048443 329 ILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNAT 397 (486)
Q Consensus 329 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls 397 (486)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|||++|+ +++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999999999999999999999999998 5689999999
Q ss_pred CCccccCCCCCC--CCCCCCCccccCCcCCCCCCCCCCCCC
Q 048443 398 HNNLTGPIPQAN--QFPTFGYSSFNGNSRLCGKPLPKECAS 436 (486)
Q Consensus 398 ~N~l~~~~p~~~--~~~~~~~~~~~~np~~c~~~~~~~C~~ 436 (486)
+|+++|.+|... .+.......+.+|+.+|+.|....|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence 999999999752 223445678999999999887677854
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-15 Score=140.89 Aligned_cols=193 Identities=28% Similarity=0.421 Sum_probs=146.1
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
+..-...||+.|++.++ |..+. +..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..+..++
T Consensus 74 ltdt~~aDlsrNR~~el-------p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSEL-------PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP 144 (722)
T ss_pred ccchhhhhccccccccC-------chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence 66666778888888874 44555 777888888888888 78888888888888888888888 7788887777
Q ss_pred CCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEc
Q 048443 177 GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 256 (486)
|+.|-+++|+++ .+|..+.....|..||.+.|.+. .+|..++++.+|+.|.+..|++.. .|..+..+
T Consensus 145 --Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-------- 211 (722)
T KOG0532|consen 145 --LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-------- 211 (722)
T ss_pred --ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC--------
Confidence 888888888885 45666777778888888888887 566677778888888877777753 22221111
Q ss_pred CccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcc
Q 048443 257 IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILS 336 (486)
Q Consensus 257 ~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls 336 (486)
.|..||+|
T Consensus 212 ------------------------------------------------------------------------pLi~lDfS 219 (722)
T KOG0532|consen 212 ------------------------------------------------------------------------PLIRLDFS 219 (722)
T ss_pred ------------------------------------------------------------------------ceeeeecc
Confidence 18889999
Q ss_pred cccccccCccchhccCCCCeeeCCCcccCccCchhcc---CCCCCCEEeCCCC
Q 048443 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLG---SLTNLESLDLSKN 386 (486)
Q Consensus 337 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N 386 (486)
.|+++ .+|..|.+|+.|++|-|.+|.++ .+|..+. ...--++|+..-+
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 99998 89999999999999999999999 6665432 2334466666666
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-14 Score=124.42 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=129.9
Q ss_pred ccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcc
Q 048443 6 CSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKI 85 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i 85 (486)
|.+|.++.+++...+. +..|-+-..+|-.+.-+++|+.+.+|.+. ...+.+....=+.|+++... +..+
T Consensus 181 ~~~l~~l~vs~~~~p~---------~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~-~s~~ 249 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPI---------DRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVH-NTTI 249 (490)
T ss_pred hhheeEEEecCCCCCC---------ccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeee-cccc
Confidence 5666667666544221 23455556667667777888888888776 33333222333566666654 3333
Q ss_pred cc---cCC--------------------chhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCccc
Q 048443 86 HG---NIP--------------------KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLT 141 (486)
Q Consensus 86 ~~---~~p--------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~ 141 (486)
+. ..| ..+.. .+.|+.||||+|.|+.+ .+++. .+.++.|++|+|.|.
T Consensus 250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT--Wq~LtelDLS~N~I~~i-------DESvKL~Pkir~L~lS~N~i~ 320 (490)
T KOG1259|consen 250 QDVPSLLPETILADPSGSEPSTSNGSALVSADT--WQELTELDLSGNLITQI-------DESVKLAPKLRRLILSQNRIR 320 (490)
T ss_pred cccccccchhhhcCccCCCCCccCCceEEecch--Hhhhhhccccccchhhh-------hhhhhhccceeEEecccccee
Confidence 21 111 11222 34678888888888774 33444 677888888888887
Q ss_pred ccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCcccccc-Ccc
Q 048443 142 GEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI-PKS 220 (486)
Q Consensus 142 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~ 220 (486)
.+.. +..+++|+.||||+|.++ .+..+-..+.+ .+.|.|++|.|... ..+..+-+|..||+++|+|...- -..
T Consensus 321 -~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN-IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 321 -TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGN-IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred -eehh-hhhcccceEeecccchhH-hhhhhHhhhcC-EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcc
Confidence 3333 777788888888888776 34444445554 77888888877543 24556667788888888776321 235
Q ss_pred CcCCCCCCEEEccCCccccC
Q 048443 221 LANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 221 ~~~l~~L~~L~L~~N~l~~~ 240 (486)
++++|.|+++.|.+|++.+.
T Consensus 395 IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccccHHHHHhhcCCCcccc
Confidence 67778888888888877643
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=128.23 Aligned_cols=105 Identities=27% Similarity=0.447 Sum_probs=77.2
Q ss_pred CCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCC
Q 048443 227 LEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFP 306 (486)
Q Consensus 227 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (486)
++.|+|++|.+.+.+|..+..+++|+.|++++|. +.+.+|... ..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--l~g~iP~~~-~~-------------------------------- 464 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS--IRGNIPPSL-GS-------------------------------- 464 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc--ccCcCChHH-hC--------------------------------
Confidence 6677777777777777777777777777777764 455555431 11
Q ss_pred CCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCC-CCCCEEeCCC
Q 048443 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSL-TNLESLDLSK 385 (486)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~ 385 (486)
+++|+.|+|++|++++.+|..+.++++|+.|+|++|++++.+|..+... .++..+++++
T Consensus 465 --------------------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 465 --------------------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred --------------------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 2558888999999999999999999999999999999999999887653 2334444443
Q ss_pred C
Q 048443 386 N 386 (486)
Q Consensus 386 N 386 (486)
|
T Consensus 525 N 525 (623)
T PLN03150 525 N 525 (623)
T ss_pred C
Confidence 3
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-13 Score=132.07 Aligned_cols=175 Identities=27% Similarity=0.405 Sum_probs=136.8
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+..-...||+.|++ ..+|..+..+..|+.+.|. +|.+. .+|..+.+ +..|++|||+.|+++.+| ..+
T Consensus 73 ~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy-~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp-------~~l 140 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRF-SELPEEACAFVSLESLILY-HNCIR-TIPEAICN--LEALTFLDLSSNQLSHLP-------DGL 140 (722)
T ss_pred cccchhhhhcccccc-ccCchHHHHHHHHHHHHHH-hccce-ecchhhhh--hhHHHHhhhccchhhcCC-------hhh
Confidence 355566788888885 4567778888888888888 88887 67888888 888888888888888754 344
Q ss_pred ccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 126 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
+.--|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+ |+.|.+..|++... |..+..+ .|..
T Consensus 141 C~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s-lr~l~vrRn~l~~l-p~El~~L-pLi~ 215 (722)
T KOG0532|consen 141 CDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS-LRDLNVRRNHLEDL-PEELCSL-PLIR 215 (722)
T ss_pred hcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH-HHHHHHhhhhhhhC-CHHHhCC-ceee
Confidence 4455788888888888 77777888888888888888887 67777888776 88888888888644 4445544 4788
Q ss_pred EECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
||++.|+++ .+|-.|..|+.|++|-|.+|.+.
T Consensus 216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 888888888 77888888888888888888886
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-11 Score=122.74 Aligned_cols=190 Identities=32% Similarity=0.390 Sum_probs=137.2
Q ss_pred EeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCC-CCcEEEccCCCCCCCCCCCCCCCcccc-cCc
Q 048443 52 WLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMK-NFSYLNLSKNYFPRFDQHPTVLPWTTL-STK 129 (486)
Q Consensus 52 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~ 129 (486)
.++++.|.+... ......++.++.|++. +|.++. ++..... +. +|+.|++++|.+..+| .... +++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~-~n~i~~-i~~~~~~--~~~nL~~L~l~~N~i~~l~-------~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLD-NNNITD-IPPLIGL--LKSNLKELDLSDNKIESLP-------SPLRNLPN 164 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecC-Cccccc-Ccccccc--chhhcccccccccchhhhh-------hhhhcccc
Confidence 577777775332 2344556788888888 888874 4444444 53 8888888888888753 2333 788
Q ss_pred cCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECc
Q 048443 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209 (486)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 209 (486)
|+.|++++|+++ .+|......+.|+.|++++|++. .+|........ |+++.+++|++. ..+..+..+.++..+.+.
T Consensus 165 L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~-L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA-LEELDLSNNSII-ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred ccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhh-hhhhhhcCCcce-ecchhhhhcccccccccC
Confidence 888888888888 66666657888888888888888 56665444444 888888888643 344556777888888888
Q ss_pred CCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 210 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+|++. ..+..++.++++++|++++|.++...+ ++.+.+++.|+++++.
T Consensus 241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 241 NNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNS 288 (394)
T ss_pred Cceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcc
Confidence 88877 446677788888888888888875444 7888888888888863
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-11 Score=106.13 Aligned_cols=122 Identities=24% Similarity=0.291 Sum_probs=33.0
Q ss_pred ccCeeecccCcccccCCcccc-CCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 129 KIRHYLISKNNLTGEIPSWIC-NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++++|+|++|.|+ .+. .++ .+.+|+.|++++|.|+. + ..+..++. |++|++++|+|+...+.....+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~-L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPR-LKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT---EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhh-hhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4455555555555 222 222 34555555555555552 2 13444444 55555555555443221112355566666
Q ss_pred CcCCccccccC-ccCcCCCCCCEEEccCCccccCCC---ccccCCCCCCEEE
Q 048443 208 LSHNLLQGKIP-KSLANCAVLEISDLRNNQINDTFP---IWLGSLLELNILV 255 (486)
Q Consensus 208 L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~ 255 (486)
+++|+|...-. ..++.+++|++|++.+|++....- ..+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66665542211 234556677777777776653321 1234456666655
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-11 Score=119.42 Aligned_cols=175 Identities=33% Similarity=0.434 Sum_probs=79.7
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCC-CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLS-SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT- 125 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~-~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~- 125 (486)
+.++.|++.+|.+.. ++.....+. +|+.|+++ +|++.. +|..+.. +++|+.|++++|++.++|. ..
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~-~N~i~~-l~~~~~~--l~~L~~L~l~~N~l~~l~~-------~~~ 183 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLS-DNKIES-LPSPLRN--LPNLKNLDLSFNDLSDLPK-------LLS 183 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhccccccc-ccchhh-hhhhhhc--cccccccccCCchhhhhhh-------hhh
Confidence 445555555555332 222333332 55555555 555542 2233344 5555555555555554322 22
Q ss_pred ccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 126 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
..+.|+.|++++|+++ .+|........|++|.+++|.+. ..+..+..+.. +..+.+.+|++... +..+..+++++.
T Consensus 184 ~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~-l~~l~l~~n~~~~~-~~~~~~l~~l~~ 259 (394)
T COG4886 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN-LSGLELSNNKLEDL-PESIGNLSNLET 259 (394)
T ss_pred hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc-ccccccCCceeeec-cchhccccccce
Confidence 1445555555555555 34443333444555555555322 23344444443 44555555544321 333444445555
Q ss_pred EECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
|++++|.++ .++. ++.+.+++.|++++|.+...
T Consensus 260 L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 260 LDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence 555555554 2222 44455555555555555433
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-11 Score=101.91 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhh-hcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLG-NFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~-~~~ 176 (486)
..++++|+|++|.|+.+..+. ..+.+|+.|++++|.|+ .++ .+..+++|++|++++|+|+. +...+. .++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~------~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLG------ATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp ------------------S--------TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccchh------hhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 445666666666666543211 01456677777777776 332 35667777777777777763 333343 456
Q ss_pred CCCcEEEccCccccccCC-ccccCCCCccEEECcCCccccccCc----cCcCCCCCCEEEcc
Q 048443 177 GGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKIPK----SLANCAVLEISDLR 233 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~ 233 (486)
. |++|++++|+|..... ..+..+++|+.|++.+|.++.. +. .+..+|+|+.||-.
T Consensus 89 ~-L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 N-LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T---EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred c-CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 5 7777777777754322 3455678888888888887732 22 35567888888643
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-11 Score=116.20 Aligned_cols=204 Identities=20% Similarity=0.171 Sum_probs=132.6
Q ss_pred CCCCCCCEeeCcCCCCCCCCc-ccccCCCCCCeeccCCCCcccccCCc--hhccccCCCCcEEEccCCCCCCCCCCCCCC
Q 048443 45 GNLNQLQWLDLAFNNFLRELP-ASIGSLSSLERLDTFPPMKIHGNIPK--WLLNPSMKNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 45 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~~n~i~~~~p~--~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
+++++|+...|.+........ .....+++++.|||+ .|-++...+. .... +++|+.|+|+.|++...-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS-~NL~~nw~~v~~i~eq--Lp~Le~LNls~Nrl~~~~------ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLS-RNLFHNWFPVLKIAEQ--LPSLENLNLSSNRLSNFI------ 188 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecch-hhhHHhHHHHHHHHHh--cccchhcccccccccCCc------
Confidence 457888888888877433221 356688999999999 8887765442 2333 899999999999886431
Q ss_pred Cccc--ccCccCeeecccCcccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCC-ccc
Q 048443 122 PWTT--LSTKIRHYLISKNNLTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP-DTF 197 (486)
Q Consensus 122 p~~~--~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~-~~~ 197 (486)
.... .++.|+.|.|+.|.++. .+......+|+|+.|+|..|...........-+.. |++|||++|++..... ...
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~-L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT-LQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH-HhhccccCCccccccccccc
Confidence 1111 16888999999998873 23334566888999999888533233333334444 8899999888864321 234
Q ss_pred cCCCCccEEECcCCcccccc-Ccc-----CcCCCCCCEEEccCCccccCC-CccccCCCCCCEEEcCc
Q 048443 198 MNGSDLRMVDLSHNLLQGKI-PKS-----LANCAVLEISDLRNNQINDTF-PIWLGSLLELNILVLIQ 258 (486)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~-p~~-----~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~ 258 (486)
..++.|+.|+++.+.+.... |+. ....++|++|++..|++.... -..+..+++|+.|.+..
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 56788888888888877432 222 245688999999999885321 12334455555554333
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-12 Score=117.49 Aligned_cols=162 Identities=22% Similarity=0.181 Sum_probs=101.4
Q ss_pred cCCCCCCeeccCCCCcccccCC-chhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCc
Q 048443 69 GSLSSLERLDTFPPMKIHGNIP-KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPS 146 (486)
Q Consensus 69 ~~l~~L~~L~L~~~n~i~~~~p-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~ 146 (486)
.++.+|+.+.|. +..+....- ..... +++++.||||+|-+..+.. +-.... +++|+.|+++.|++......
T Consensus 118 sn~kkL~~IsLd-n~~V~~~~~~~~~k~--~~~v~~LdLS~NL~~nw~~----v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLD-NYRVEDAGIEEYSKI--LPNVRDLDLSRNLFHNWFP----VLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeec-Cccccccchhhhhhh--CCcceeecchhhhHHhHHH----HHHHHHhcccchhcccccccccCCccc
Confidence 367788888887 655553222 24444 8889999999988775432 111112 78888888888887632222
Q ss_pred -cccCCCCCCEEECcCCcCccc-ccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccC--ccCc
Q 048443 147 -WICNLSSLYVLDLSDNNLSGE-LLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP--KSLA 222 (486)
Q Consensus 147 -~~~~l~~L~~L~Ls~N~i~~~-~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p--~~~~ 222 (486)
.-..+++|+.|.|+.|.++.. +...+..+++ |+.|+|..|............+..|++|||++|.+- ..+ ...+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence 123567888888888887732 2233445665 788888877543344444455667777888777765 233 3455
Q ss_pred CCCCCCEEEccCCcccc
Q 048443 223 NCAVLEISDLRNNQIND 239 (486)
Q Consensus 223 ~l~~L~~L~L~~N~l~~ 239 (486)
.++.|..|+++.+.+.+
T Consensus 269 ~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIAS 285 (505)
T ss_pred cccchhhhhccccCcch
Confidence 67777777777776653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-12 Score=115.72 Aligned_cols=196 Identities=24% Similarity=0.279 Sum_probs=98.3
Q ss_pred CCCCCCCCCEeeCcCCCCCCC----CcccccCCCCCCeeccCCCCcccc----cCCc-------hhccccCCCCcEEEcc
Q 048443 43 SLGNLNQLQWLDLAFNNFLRE----LPASIGSLSSLERLDTFPPMKIHG----NIPK-------WLLNPSMKNFSYLNLS 107 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~~n~i~~----~~p~-------~~~~~~l~~L~~L~Ls 107 (486)
..-.+..++.++||+|.+... +...+.+.++|+..+++ . -++| .+|+ ++.. .++|++||||
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d-~ftGR~~~Ei~e~L~~l~~aL~~--~~~L~~ldLS 100 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-D-MFTGRLKDEIPEALKMLSKALLG--CPKLQKLDLS 100 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-h-hhcCCcHHHHHHHHHHHHHHHhc--CCceeEeecc
Confidence 345566788888888886532 23445566777777775 2 2332 2222 2333 4466666666
Q ss_pred CCCCCC--CCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEc
Q 048443 108 KNYFPR--FDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSL 184 (486)
Q Consensus 108 ~N~l~~--~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L 184 (486)
.|-|.. ++.+. +.+. +..|++|.|.+|.+.-.-...++. .|..|. .++. .+.-+ .|+++..
T Consensus 101 DNA~G~~g~~~l~----~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk-------~~~~~-~Lrv~i~ 164 (382)
T KOG1909|consen 101 DNAFGPKGIRGLE----ELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK-------AASKP-KLRVFIC 164 (382)
T ss_pred ccccCccchHHHH----HHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc-------cCCCc-ceEEEEe
Confidence 665541 11100 0011 345555555555554111001110 011111 0100 01112 2777777
Q ss_pred cCccccccC----CccccCCCCccEEECcCCcccc----ccCccCcCCCCCCEEEccCCccccC----CCccccCCCCCC
Q 048443 185 QGKNFFGTT----PDTFMNGSDLRMVDLSHNLLQG----KIPKSLANCAVLEISDLRNNQINDT----FPIWLGSLLELN 252 (486)
Q Consensus 185 ~~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~ 252 (486)
++|++.... ...|...+.|+.+.++.|.|.. ....+|..+++|++|||.+|.++.. +...+..+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 777764332 2335556777777777777642 1234567788888888888877632 223344455566
Q ss_pred EEEcCc
Q 048443 253 ILVLIQ 258 (486)
Q Consensus 253 ~L~l~~ 258 (486)
.|++++
T Consensus 245 El~l~d 250 (382)
T KOG1909|consen 245 ELNLGD 250 (382)
T ss_pred eecccc
Confidence 665555
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-11 Score=105.79 Aligned_cols=136 Identities=22% Similarity=0.215 Sum_probs=100.9
Q ss_pred ccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC
Q 048443 66 ASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP 145 (486)
Q Consensus 66 ~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~ 145 (486)
..+.....|+++||+ +|.|+ .+.++..- ++.++.|++|+|.|..+..+ ..+++|++||||+|.++ .+.
T Consensus 278 ~~~dTWq~LtelDLS-~N~I~-~iDESvKL--~Pkir~L~lS~N~i~~v~nL-------a~L~~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 278 VSADTWQELTELDLS-GNLIT-QIDESVKL--APKLRRLILSQNRIRTVQNL-------AELPQLQLLDLSGNLLA-ECV 345 (490)
T ss_pred EecchHhhhhhcccc-ccchh-hhhhhhhh--ccceeEEeccccceeeehhh-------hhcccceEeecccchhH-hhh
Confidence 344455678888888 88887 45556655 78888888888888765331 11688888888888887 555
Q ss_pred ccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccC-CccccCCCCccEEECcCCccccc
Q 048443 146 SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTT-PDTFMNGSDLRMVDLSHNLLQGK 216 (486)
Q Consensus 146 ~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 216 (486)
+.-..+.++++|.|+.|.|.. ..+++.+-+ |..||+++|+|.... -..+++++.|+++.|.+|.+.+.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYS-LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIET--LSGLRKLYS-LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhh--hhhhHhhhh-heeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 666677888888888888862 346677776 888999999886532 24578899999999999998843
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.8e-10 Score=118.21 Aligned_cols=293 Identities=24% Similarity=0.230 Sum_probs=141.9
Q ss_pred CCCCEeeCcCCC--CCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 48 NQLQWLDLAFNN--FLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 48 ~~L~~L~Ls~n~--~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
++|+.|-+..|. +.......|..++.|++|||+ +|.-.+.+|..++. +-+|++|++++..+.++ |..+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs-~~~~l~~LP~~I~~--Li~LryL~L~~t~I~~L-------P~~l 614 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS-GNSSLSKLPSSIGE--LVHLRYLDLSDTGISHL-------PSGL 614 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECC-CCCccCcCChHHhh--hhhhhcccccCCCcccc-------chHH
Confidence 356666666664 333333445566666666666 55555566666666 66666666666666653 3344
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcC--cccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNL--SGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i--~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
. +..|.+|++..+.-...+|.....+++|++|.+-.-.. ....-..+..+.. |+.+....... .+-..+..+..
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~-L~~ls~~~~s~--~~~e~l~~~~~ 691 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH-LENLSITISSV--LLLEDLLGMTR 691 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc-hhhheeecchh--HhHhhhhhhHH
Confidence 4 56666666666654434455555566666666644321 1111122222222 33333322111 00011111122
Q ss_pred cc----EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccc
Q 048443 203 LR----MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAM 278 (486)
Q Consensus 203 L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L 278 (486)
|. .+.+.++... ..+..+..+.+|+.|.+.++.+......+......+. .|..+..+
T Consensus 692 L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~------------------~f~~l~~~ 752 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL------------------CFPNLSKV 752 (889)
T ss_pred HHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh------------------hHHHHHHH
Confidence 21 2222222222 2233455566666666666655432222211111110 01111111
Q ss_pred cccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeee
Q 048443 279 KFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLG 358 (486)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 358 (486)
........+ ...+...+++|+.|.+.++...+.+.+....+..++.+.
T Consensus 753 ~~~~~~~~r--------------------------------~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i 800 (889)
T KOG4658|consen 753 SILNCHMLR--------------------------------DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELI 800 (889)
T ss_pred Hhhcccccc--------------------------------ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEE
Confidence 000000000 001112358899999998887767766677777788777
Q ss_pred CCCcccCcc-CchhccCCCCCCEEeCCCCCCCCCCEEeccCCccccCCCC
Q 048443 359 LASNNLQGH-IPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 359 Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~L~~L~ls~N~l~~~~p~ 407 (486)
+..+.+.+. .-...++++++..+.+++ ..++.+.+..++-.+..|.
T Consensus 801 ~~f~~~~~l~~~~~l~~l~~i~~~~l~~---~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 801 LPFNKLEGLRMLCSLGGLPQLYWLPLSF---LKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ecccccccceeeecCCCCceeEecccCc---cchhheehhcCcccccCcc
Confidence 777777755 234455556555555553 3366666666554444443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.5e-10 Score=77.54 Aligned_cols=60 Identities=38% Similarity=0.531 Sum_probs=55.7
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
++|++|++++|+++...+..|..+++|++|++++|.+++..+.+|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 469999999999997777899999999999999999998888899999999999999986
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-10 Score=113.98 Aligned_cols=193 Identities=27% Similarity=0.268 Sum_probs=114.8
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+..++.+.+..|.+.. +-..+..+++|+.|++. .|+|..+.. .+.. +++|++|++++|.|+.+..+..
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~-~n~i~~i~~-~l~~--~~~L~~L~ls~N~I~~i~~l~~------ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLY-DNKIEKIEN-LLSS--LVNLQVLDLSFNKITKLEGLST------ 138 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeecc-ccchhhccc-chhh--hhcchheeccccccccccchhh------
Confidence 45566666677777544 33446677788888887 777775443 1334 7788888888888777643211
Q ss_pred ccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 126 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
++.|+.|++++|.|+. + ..+..++.|+.+++++|++....+.....+.. ++.+++.+|.+.... .+..+..+..
T Consensus 139 -l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~-l~~l~l~~n~i~~i~--~~~~~~~l~~ 212 (414)
T KOG0531|consen 139 -LTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELIS-LEELDLGGNSIREIE--GLDLLKKLVL 212 (414)
T ss_pred -ccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccc-hHHHhccCCchhccc--chHHHHHHHH
Confidence 4567888888888772 2 23555777888888888777443310344554 777777777775432 2334445555
Q ss_pred EECcCCccccccCccCcCCCC--CCEEEccCCccccCCCccccCCCCCCEEEcCc
Q 048443 206 VDLSHNLLQGKIPKSLANCAV--LEISDLRNNQINDTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 258 (486)
+++..|.++..-+ +..+.. |+.+++++|++... +..+..+..+..|++.+
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSS 264 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhh
Confidence 5777777763222 222333 67777777776532 23334444444444444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-09 Score=76.92 Aligned_cols=61 Identities=33% Similarity=0.434 Sum_probs=53.3
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
++|++|++++|++..+.+..|.++++|++|+++ +|.++...|..|.+ +++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~--l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSN--LPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTT--STTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcC--CCCCCEEeCcCCcC
Confidence 578899999999888877889999999999999 99999888888888 89999999998864
|
... |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-10 Score=103.80 Aligned_cols=188 Identities=20% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCccc----ccCCCCCCeeccCCCCcccccCCch-------------hccccCCCCcEEEc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPAS----IGSLSSLERLDTFPPMKIHGNIPKW-------------LLNPSMKNFSYLNL 106 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~----~~~l~~L~~L~L~~~n~i~~~~p~~-------------~~~~~l~~L~~L~L 106 (486)
+..+++|++||||.|.+....+.. +..+..|++|.|. +|.+...-... ... -+.|+++..
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~--~~~Lrv~i~ 164 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAAS--KPKLRVFIC 164 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCC--CcceEEEEe
Confidence 444567777777777765444332 3456677777776 66665221111 122 456666666
Q ss_pred cCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc----cCCccccCCCCCCEEECcCCcCccc----ccchhhhcCC
Q 048443 107 SKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG----EIPSWICNLSSLYVLDLSDNNLSGE----LLQCLGNFSG 177 (486)
Q Consensus 107 s~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~l~~~~~ 177 (486)
+.|++..-+... +...+. .+.|+++.++.|.|.. .+..+|..+++|+.|||.+|-++.. +...+..++.
T Consensus 165 ~rNrlen~ga~~--~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 165 GRNRLENGGATA--LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred eccccccccHHH--HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 666665332200 111122 4566666666666542 1122455566666666666665531 2223344443
Q ss_pred CCcEEEccCccccccCCccc-----cCCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCcc
Q 048443 178 GLSVLSLQGKNFFGTTPDTF-----MNGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQI 237 (486)
Q Consensus 178 ~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l 237 (486)
|+++++++|.+......+| ...++|+.|.+.+|.++.. +.......+.|+.|+|++|.+
T Consensus 243 -L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 -LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666666666543322222 1245566666666665421 112233355566666666665
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-09 Score=108.56 Aligned_cols=180 Identities=26% Similarity=0.204 Sum_probs=139.2
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+-..+..+++|..|++..|+|..+.. .+..+++|++|+++ +|.|+...+-.. ++.|+.|++++|.|..++.+.
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls-~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~- 159 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLS-FNKITKLEGLST----LTLLKELNLSGNLISDISGLE- 159 (414)
T ss_pred hhcccccccceeeeeccccchhhccc-chhhhhcchheecc-ccccccccchhh----ccchhhheeccCcchhccCCc-
Confidence 34458889999999999999876543 37789999999999 999997665444 778999999999999864411
Q ss_pred CCCcccccCccCeeecccCcccccCCcc-ccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 120 VLPWTTLSTKIRHYLISKNNLTGEIPSW-ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 120 l~p~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
.+..|+.+++++|+++...+ . ...+.+++.+++.+|.+... ..+..... +..+++..|.++...+- .
T Consensus 160 ------~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~-l~~~~l~~n~i~~~~~l--~ 227 (414)
T KOG0531|consen 160 ------SLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKK-LVLLSLLDNKISKLEGL--N 227 (414)
T ss_pred ------cchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHH-HHHhhcccccceeccCc--c
Confidence 17899999999999995443 2 57889999999999998743 33333333 66678899988755432 2
Q ss_pred CCC--CccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 199 NGS--DLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 199 ~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
.+. .|+.+++++|.+. ..+..+..+..+..+++.+|.+..
T Consensus 228 ~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 233 3899999999998 444667788999999999998863
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-10 Score=110.91 Aligned_cols=178 Identities=22% Similarity=0.187 Sum_probs=118.0
Q ss_pred CcCCCCCCCCCEeeCcCCCCCCCCcccccCC-CCCCeeccCCCCccc----------ccCCchhccccCCCCcEEEccCC
Q 048443 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSL-SSLERLDTFPPMKIH----------GNIPKWLLNPSMKNFSYLNLSKN 109 (486)
Q Consensus 41 p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~L~~L~L~~~n~i~----------~~~p~~~~~~~l~~L~~L~Ls~N 109 (486)
|-++..+..|++|.|.++.+... ..+..+ .+|++|.. +|.++ +.+..++. ...|.+.+.++|
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC--~~Sl~Al~~v~ascggd~~ns~~---Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC--HNSLDALRHVFASCGGDISNSPV---WNKLATASFSYN 174 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh--hccHHHHHHHHHHhccccccchh---hhhHhhhhcchh
Confidence 45677889999999999987642 222222 24555543 23322 11111111 346777888888
Q ss_pred CCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc
Q 048443 110 YFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN 188 (486)
Q Consensus 110 ~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~ 188 (486)
.+..+ ..... ++.++.|+|++|+++. .. .+..+++|++|||++|.+. .+|..-..-.. |..|.+++|.
T Consensus 175 ~L~~m-------D~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 175 RLVLM-------DESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHHhH-------HHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccH
Confidence 88753 33444 7889999999999883 33 7888999999999999987 45543222223 8889999998
Q ss_pred ccccCCccccCCCCccEEECcCCccccccC-ccCcCCCCCCEEEccCCccc
Q 048443 189 FFGTTPDTFMNGSDLRMVDLSHNLLQGKIP-KSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 189 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 238 (486)
++... .+.++.+|+.||+++|-+.+.-. ..++.+..|..|+|.+|++.
T Consensus 244 l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 LTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 86542 46788889999999998764211 22455677888888888864
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-09 Score=106.90 Aligned_cols=127 Identities=23% Similarity=0.161 Sum_probs=97.5
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
-..|.+.+.++|.++ .+..++.-++.|+.|+|++|+++... .+..++. |++|||+.|.+..+.--...++. |+.|
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~-LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPK-LKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhccc-ccccccccchhccccccchhhhh-heee
Confidence 356888889999988 67778888899999999999998433 7788887 99999999999755433333444 9999
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCC-ccccCCCCCCEEEcCccC
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP-IWLGSLLELNILVLIQQL 260 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~ 260 (486)
.+++|.++.. ..+.++.+|+.||+++|-+.+.-. ..++.+..|+.|.|.+|-
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999998743 347788999999999998875422 234566778888888864
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-07 Score=100.59 Aligned_cols=78 Identities=28% Similarity=0.340 Sum_probs=36.1
Q ss_pred CcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcC
Q 048443 179 LSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI 257 (486)
Q Consensus 179 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 257 (486)
|..|||++|.-.+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.....+|.....+.+|++|.+.
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 444444444444444444444444444444444444 444444444444555444444333333334444444444443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.9e-07 Score=80.33 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=33.3
Q ss_pred cCcccEEEcccccccccC-ccchhccCCCCeeeCCCcccCccC-chhccCCCCCCEEeCCCCC
Q 048443 327 PDILKGIILSSNRFDGEM-PTSIANLKGLQVLGLASNNLQGHI-PSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 387 (486)
++++..+.+..|.+...- -..+..++.+..|+|+.|+|.+-. -+++..+++|..|.+++|+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 455666666666554321 123444555566677777665211 1245566666666666666
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.7e-06 Score=70.97 Aligned_cols=103 Identities=26% Similarity=0.287 Sum_probs=56.8
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccC-ccCcCCCCCCEEE
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP-KSLANCAVLEISD 231 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~ 231 (486)
....+||++|.+.. ...|..++. |.+|.+++|+|+.+.|..-.-+++|+.|.|.+|.|..... ..+..|+.|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~r-L~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPR-LHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccc-cceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44455555555531 123444444 5566666666655555443445566666666666542111 2255667777777
Q ss_pred ccCCccccCCC---ccccCCCCCCEEEcCc
Q 048443 232 LRNNQINDTFP---IWLGSLLELNILVLIQ 258 (486)
Q Consensus 232 L~~N~l~~~~~---~~~~~l~~L~~L~l~~ 258 (486)
+-+|+.+...- ..+..+++|+.||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777653322 2456677777777665
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5e-08 Score=77.47 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccc
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
.+++|++++|.|+ .+|..+..++. |+.++++.|.+.. .|..+..+.++-.|+..+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~a-Lr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPA-LRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHH-hhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence 4444444444444 34444444443 4444444444432 2233333444444444444443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-07 Score=84.85 Aligned_cols=215 Identities=19% Similarity=0.193 Sum_probs=112.8
Q ss_pred CCEEECcCCcCcccccchhhhcCC-CCcEEEccCcccccc-CCccccCC-CCccEEECcCCccccc-cCccCcCCCCCCE
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSG-GLSVLSLQGKNFFGT-TPDTFMNG-SDLRMVDLSHNLLQGK-IPKSLANCAVLEI 229 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~-~L~~L~L~~n~i~~~-~~~~~~~l-~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~ 229 (486)
-+++|+.+-.|. |..++.+.. ....+.+..-.+... ..+.+.-+ +.|++|||+.-.|+.. +-..+..|.+|+.
T Consensus 138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 356666665554 444444332 133444443222211 11112211 3577788877776532 2233566777888
Q ss_pred EEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCc
Q 048443 230 SDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQND 309 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (486)
|.+.++++++.+...+++-.+|+.|+++.... +...--.-++.+++.|..++++-+.......
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V---------------- 277 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG-FTENALQLLLSSCSRLDELNLSWCFLFTEKV---------------- 277 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccc-cchhHHHHHHHhhhhHhhcCchHhhccchhh----------------
Confidence 88888888776667777777888887766210 1111122346677777777666552211110
Q ss_pred ceEEeecCCCccccCcccCcccEEEccccccc---ccCccchhccCCCCeeeCCCcc-cCccCchhccCCCCCCEEeCCC
Q 048443 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFD---GEMPTSIANLKGLQVLGLASNN-LQGHIPSCLGSLTNLESLDLSK 385 (486)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 385 (486)
......+-+.++.|+|+|+.=. ..+..-.+..++|..||||+|- ++......|..++.|++|.++.
T Consensus 278 ----------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 278 ----------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred ----------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhh
Confidence 0011112245666766665321 1222223556777777777654 3333334556677777777777
Q ss_pred CC------------CCCCCEEeccC
Q 048443 386 NR------------LTFLEFFNATH 398 (486)
Q Consensus 386 N~------------l~~L~~L~ls~ 398 (486)
|. .++|.+||+.+
T Consensus 348 CY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 348 CYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hcCCChHHeeeeccCcceEEEEecc
Confidence 65 55666776554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-07 Score=83.32 Aligned_cols=175 Identities=22% Similarity=0.244 Sum_probs=81.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcc----cccCCCCCCeeccCCCCcccccCC-----------chhccccCCCCcEEEccC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPA----SIGSLSSLERLDTFPPMKIHGNIP-----------KWLLNPSMKNFSYLNLSK 108 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~----~~~~l~~L~~L~L~~~n~i~~~~p-----------~~~~~~~l~~L~~L~Ls~ 108 (486)
+..+..++.+|||+|.|...-.. .+.+-.+|+..+++ . -++|... .++.. ++.|+..+||.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs-d-~ftgr~kde~~~~L~~Ll~aLlk--cp~l~~v~LSD 101 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS-D-AFTGRDKDELYSNLVMLLKALLK--CPRLQKVDLSD 101 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh-h-hhhcccHHHHHHHHHHHHHHHhc--CCcceeeeccc
Confidence 34467788888888887654333 34455667776664 2 2232221 22333 55666666666
Q ss_pred CCCCC-CCCCCCCCCcccc-cCccCeeecccCcccccCCc-cccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEcc
Q 048443 109 NYFPR-FDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPS-WICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 109 N~l~~-~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~ 185 (486)
|.|.. .|.. +.+.+. .+.|.+|.+++|.+. .+.+ -++. .|. +|..|+ ...+-+. |+.....
T Consensus 102 NAfg~~~~e~---L~d~is~~t~l~HL~l~NnGlG-p~aG~rigk--al~--~la~nK-------Kaa~kp~-Le~vicg 165 (388)
T COG5238 102 NAFGSEFPEE---LGDLISSSTDLVHLKLNNNGLG-PIAGGRIGK--ALF--HLAYNK-------KAADKPK-LEVVICG 165 (388)
T ss_pred cccCcccchH---HHHHHhcCCCceeEEeecCCCC-ccchhHHHH--HHH--HHHHHh-------hhccCCC-ceEEEec
Confidence 65541 1110 001111 344555555555443 1111 0000 000 000000 0112223 6666666
Q ss_pred CccccccCC----ccccCCCCccEEECcCCccccc-----cCccCcCCCCCCEEEccCCccc
Q 048443 186 GKNFFGTTP----DTFMNGSDLRMVDLSHNLLQGK-----IPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 186 ~n~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
.|++..-.. ..+..-..|+++.+..|.|... .-..+..+.+|+.||+.+|.++
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 666542211 1122334677777777766421 1112445677788888887776
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-06 Score=54.73 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=21.3
Q ss_pred cccEEEcccccccccCccchhccCCCCeeeCCCcccC
Q 048443 329 ILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365 (486)
Q Consensus 329 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 365 (486)
+|++|++++|+|+ .+|..++++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 44545666666666666666666
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=69.04 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=57.9
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccC
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST 128 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~ 128 (486)
+...+||++|.+... ..|..+++|.+|.+. +|+|+.+-|.--.. +++|+.|.|.+|.|.++.. +.....++
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~-nNrIt~I~p~L~~~--~p~l~~L~LtnNsi~~l~d----l~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLN-NNRITRIDPDLDTF--LPNLKTLILTNNSIQELGD----LDPLASCP 113 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEec-CCcceeeccchhhh--ccccceEEecCcchhhhhh----cchhccCC
Confidence 455666776665433 345666667777776 66776655544444 6666777777766665433 11112256
Q ss_pred ccCeeecccCcccccCC---ccccCCCCCCEEECcC
Q 048443 129 KIRHYLISKNNLTGEIP---SWICNLSSLYVLDLSD 161 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~ 161 (486)
+|++|.+-+|.++..-- -.+..+++|++||+..
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666666666652110 1244556666666544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.5e-06 Score=53.63 Aligned_cols=40 Identities=38% Similarity=0.619 Sum_probs=32.8
Q ss_pred CCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCCCCC
Q 048443 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~L~ 392 (486)
++|++|++++|+|+ .+|..++++++|++|++++|+++.+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999999 56667999999999999999877543
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.4e-07 Score=83.28 Aligned_cols=177 Identities=20% Similarity=0.156 Sum_probs=111.0
Q ss_pred CCCEeeCcCCCCCCCC-cccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC-CCCCCCCCCCCCcccc
Q 048443 49 QLQWLDLAFNNFLREL-PASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY-FPRFDQHPTVLPWTTL 126 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~p~~~~ 126 (486)
.|++||||+..|+..- -.-+..+.+|+.|.+. ++++.+.+...++. -.+|+.||++.+. +++.. ..-.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE-g~~LdD~I~~~iAk--N~~L~~lnlsm~sG~t~n~-----~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE-GLRLDDPIVNTIAK--NSNLVRLNLSMCSGFTENA-----LQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccc-ccccCcHHHHHHhc--cccceeeccccccccchhH-----HHHHHH
Confidence 4888888887765322 2335677888888888 88888877777877 7888888888753 44321 001122
Q ss_pred -cCccCeeecccCcccccCCc-cccC-CCCCCEEECcCCcC--c-ccccchhhhcCCCCcEEEccCccc-cccCCccccC
Q 048443 127 -STKIRHYLISKNNLTGEIPS-WICN-LSSLYVLDLSDNNL--S-GELLQCLGNFSGGLSVLSLQGKNF-FGTTPDTFMN 199 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~-~~~~-l~~L~~L~Ls~N~i--~-~~~~~~l~~~~~~L~~L~L~~n~i-~~~~~~~~~~ 199 (486)
++.|.+|+++-|.+....-. .+.. -+.|+.|++++.+- . ..+..-....+. |..|||++|.. +......|..
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~-l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc-eeeeccccccccCchHHHHHHh
Confidence 67888888888877642211 1111 24677788877531 1 111112233444 88888887653 3223334667
Q ss_pred CCCccEEECcCCccccccCcc---CcCCCCCCEEEccCCc
Q 048443 200 GSDLRMVDLSHNLLQGKIPKS---LANCAVLEISDLRNNQ 236 (486)
Q Consensus 200 l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~ 236 (486)
++.|++|.++.|.. ++|.. +...++|.+|++.++-
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88888888888864 44543 4567888888887653
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.8e-07 Score=72.56 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=75.6
Q ss_pred ccCeeecccCcccccCCcccc---CCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 129 KIRHYLISKNNLTGEIPSWIC---NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
.+..++|+.|++- .++++.. ...+|+..+|++|.+. ..|..|......++.+++++|.|+. +|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhh
Confidence 3556677777765 4555443 4456777788888888 5566655443338888888888864 4555888888888
Q ss_pred EECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|+++.|.+. ..|..+..+.++-+|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 888888887 66777777888888888887765
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.1e-05 Score=73.95 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=25.6
Q ss_pred cCcccEEEcccccccccCccchhccCCCCeeeCCCcc
Q 048443 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
|++|+.|++++|... ..|..+. .+|+.|+++.+.
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 467999999998876 4555444 589999998774
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-06 Score=78.38 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=18.9
Q ss_pred ccEEEcccccccc-cCccchhccCCCCeeeCCCcccCc
Q 048443 330 LKGIILSSNRFDG-EMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 330 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
+.-|.|+.|+|.. ..-+.+.+++.|..|-+++|.+.+
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3344455555542 112235556666666666666653
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.6e-05 Score=73.57 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=89.3
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCC-CCCCCCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKN-YFPRFDQHPTVLP 122 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~p 122 (486)
+..+.+++.|++++|.+.. +| .+ -.+|++|.+++.+.+ ..+|+.+ .++|++|++++| .+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nL-tsLP~~L----P~nLe~L~Ls~Cs~L~sLP------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNL-TTLPGSI----PEGLEKLTVCHCPEISGLP------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCc-ccCCchh----hhhhhheEccCcccccccc-------
Confidence 4456899999999997554 35 11 246999999833555 4667655 568999999998 666543
Q ss_pred cccccCccCeeecccCcccc--cCCccccCCCCCCEEECcCCc-Cc-ccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 123 WTTLSTKIRHYLISKNNLTG--EIPSWICNLSSLYVLDLSDNN-LS-GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 123 ~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~-i~-~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
.+|+.|+++.+.... .+|. +|+.|.+.+++ .. ...| ..+|.+|++|++++|.... .|..+.
T Consensus 112 -----~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~LP 176 (426)
T PRK15386 112 -----ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKLP 176 (426)
T ss_pred -----cccceEEeCCCCCcccccCcc------hHhheeccccccccccccc---cccCCcccEEEecCCCccc-Cccccc
Confidence 468888888776541 2332 56677775433 11 0111 1244569999999888653 344343
Q ss_pred CCCCccEEECcCCc
Q 048443 199 NGSDLRMVDLSHNL 212 (486)
Q Consensus 199 ~l~~L~~L~L~~N~ 212 (486)
.+|+.|+++.+.
T Consensus 177 --~SLk~L~ls~n~ 188 (426)
T PRK15386 177 --ESLQSITLHIEQ 188 (426)
T ss_pred --ccCcEEEecccc
Confidence 589999998774
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=1.9e-05 Score=70.46 Aligned_cols=60 Identities=22% Similarity=0.145 Sum_probs=30.4
Q ss_pred CcccEEEcccccccccC----ccchhccCCCCeeeCCCcccCccCchhc----c--CCCCCCEEeCCCCC
Q 048443 328 DILKGIILSSNRFDGEM----PTSIANLKGLQVLGLASNNLQGHIPSCL----G--SLTNLESLDLSKNR 387 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~--~l~~L~~L~Ls~N~ 387 (486)
.+|+.|||..|-++... ...+...+.|++|.+.+|-++..-..++ . ..++|..|-..+|.
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 45666666666665322 2223444556666666666654333221 1 13455555555555
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00023 Score=58.26 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=27.1
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|+.+.+.. .+......+|.++++|+.+++..+ +......+|..... ++.+.+.+ .+.......|..+++++.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~-l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKS-LESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT--EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccc-cccccccc-ccccccccccccccccccc
Confidence 34455555443 333333444455545555555443 33222233333333 44444433 2222333334444444444
Q ss_pred ECcC
Q 048443 207 DLSH 210 (486)
Q Consensus 207 ~L~~ 210 (486)
++..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 4433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.4e-05 Score=66.24 Aligned_cols=124 Identities=19% Similarity=0.137 Sum_probs=72.7
Q ss_pred hhhhccCCccccc--CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCC--cccccCCchhccccCCCCc
Q 048443 27 LDRLQRLSDFSGQ--IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPM--KIHGNIPKWLLNPSMKNFS 102 (486)
Q Consensus 27 l~~L~~~n~~~~~--~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n--~i~~~~p~~~~~~~l~~L~ 102 (486)
++.+...|.+++. +..-.-.+..|+.|++.+..++.. ..|..+++|++|+++ .| .+.+.++.-... +++|+
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl~e~--~P~l~ 94 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELS-DNYRRVSGGLEVLAEK--APNLK 94 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhccc-CCcccccccceehhhh--CCcee
Confidence 3334333444433 555566667777777777665543 346677888888888 88 555555555555 78888
Q ss_pred EEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC---ccccCCCCCCEEEC
Q 048443 103 YLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP---SWICNLSSLYVLDL 159 (486)
Q Consensus 103 ~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L 159 (486)
+|+++.|+|..+.. ++..-.+.+|..|++.+|..+.... ..|.-+++|++||-
T Consensus 95 ~l~ls~Nki~~lst----l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 95 VLNLSGNKIKDLST----LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred EEeecCCccccccc----cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 88888888764322 1111114666777777776553111 12344555555443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00059 Score=55.81 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=59.4
Q ss_pred CccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCC
Q 048443 145 PSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANC 224 (486)
Q Consensus 145 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 224 (486)
..+|.++.+|+.+.+.. .+......+|..... |+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~-l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTS-LKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT--SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhcccccc-ccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 34566777777777764 455444455665555 777777664 5555566677776777777765 3333444566667
Q ss_pred CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccc
Q 048443 225 AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAM 278 (486)
Q Consensus 225 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L 278 (486)
++|+.+++..+ +.......|... .++.+.+.. ....++...|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~----~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS----NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT----B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC----CccEECCccccccccC
Confidence 77777777654 444555566666 777777654 3344566666666555
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00016 Score=75.78 Aligned_cols=134 Identities=20% Similarity=0.251 Sum_probs=77.6
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc--cCccCeeecccCccccc-CCccccCCCCCCEEECcCCcCcccccchhhh
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL--STKIRHYLISKNNLTGE-IPSWICNLSSLYVLDLSDNNLSGELLQCLGN 174 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 174 (486)
-.+|++||+++...-.-. .|..++ +|.|++|.+++-.+... ......++++|..||+|+.+++.. .++..
T Consensus 121 r~nL~~LdI~G~~~~s~~-----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNG-----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhcc-----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 356777777775432100 111223 67777777777665421 223345677777888887777632 56667
Q ss_pred cCCCCcEEEccCccccc-cCCccccCCCCccEEECcCCcccccc------CccCcCCCCCCEEEccCCcccc
Q 048443 175 FSGGLSVLSLQGKNFFG-TTPDTFMNGSDLRMVDLSHNLLQGKI------PKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 175 ~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~~~------p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+++ |+.|.+.+=.+.. ..-..+..+++|+.||+|........ -+.-..+|+|+.||.+++.+.+
T Consensus 194 Lkn-Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 194 LKN-LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccc-HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 766 7777776655432 11123456777888888776543211 0112347788888888777654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00015 Score=75.96 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=58.4
Q ss_pred cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc-cCchhccCCCCCCEEeCCCCC-----------------C
Q 048443 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG-HIPSCLGSLTNLESLDLSKNR-----------------L 388 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~-----------------l 388 (486)
+++|..||+|+.+++. + ..++++++|+.|.+.+=.+.. ..-..+.++++|+.||+|..+ +
T Consensus 172 FpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred cCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 4789999999999883 3 568889999999888877763 112245689999999999877 8
Q ss_pred CCCCEEeccCCcccc
Q 048443 389 TFLEFFNATHNNLTG 403 (486)
Q Consensus 389 ~~L~~L~ls~N~l~~ 403 (486)
+.|+.||.|+..+.+
T Consensus 250 peLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 250 PELRFLDCSGTDINE 264 (699)
T ss_pred ccccEEecCCcchhH
Confidence 899999999876653
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00056 Score=61.11 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=50.5
Q ss_pred CCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCc--cccccCCccccCCCCccEEECcCCccccccCcc-
Q 048443 144 IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGK--NFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS- 220 (486)
Q Consensus 144 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~- 220 (486)
+......+..|+.|++.+..++. -..+..+++ |+.|.++.| ++.+.++.....+++|++|++++|++.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~-LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPK-LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcch-hhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 44444555666666666666552 123445555 777777777 4444444444445777777777776652 222
Q ss_pred --CcCCCCCCEEEccCCccc
Q 048443 221 --LANCAVLEISDLRNNQIN 238 (486)
Q Consensus 221 --~~~l~~L~~L~L~~N~l~ 238 (486)
+..+.+|..|++.+|..+
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcchhhhhcccCCcc
Confidence 334455666666666544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00026 Score=63.59 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=63.2
Q ss_pred eEEeecCCCccccCc-ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch--hccCCCCCCEEeCCCCC
Q 048443 311 SITMSNEGQMMTHDK-IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS--CLGSLTNLESLDLSKNR 387 (486)
Q Consensus 311 ~l~~~~~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~ 387 (486)
.+++.++++.....+ .++.|++|.||-|.|+..- .+..+++|++|+|..|.|. .+.+ .+.++++|+.|-|..|+
T Consensus 23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCC
Confidence 344555555444332 3789999999999998433 3789999999999999998 4443 56789999999999999
Q ss_pred ----------------CCCCCEEe
Q 048443 388 ----------------LTFLEFFN 395 (486)
Q Consensus 388 ----------------l~~L~~L~ 395 (486)
+++|+.||
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 67777765
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.00043 Score=62.19 Aligned_cols=57 Identities=25% Similarity=0.187 Sum_probs=27.2
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccc
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNF 189 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i 189 (486)
.+.+.|++.++.++. + .....|+.|+.|.||-|+|+.. ..+..+.+ |++|+|..|.|
T Consensus 19 ~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL--~pl~rCtr-LkElYLRkN~I 75 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSL--APLQRCTR-LKELYLRKNCI 75 (388)
T ss_pred HHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccc--hhHHHHHH-HHHHHHHhccc
Confidence 445555666665552 1 1234455566666666655521 12333333 44444444444
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.0057 Score=32.55 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=5.3
Q ss_pred CCeeeCCCcccC
Q 048443 354 LQVLGLASNNLQ 365 (486)
Q Consensus 354 L~~L~Ls~N~l~ 365 (486)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.00082 Score=63.84 Aligned_cols=61 Identities=26% Similarity=0.262 Sum_probs=31.7
Q ss_pred cCcccEEEcccccccccC-----ccchhccCCCCeeeCCCcccC-ccCchhccCCCCCCEEeCCCCC
Q 048443 327 PDILKGIILSSNRFDGEM-----PTSIANLKGLQVLGLASNNLQ-GHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
++.|+++.++++...... ...-..+..|..+.|+++... +..-+.+...++|+.+++-.++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 355666666666542111 111233556677777776644 2222334555666666666555
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.011 Score=31.41 Aligned_cols=12 Identities=50% Similarity=0.564 Sum_probs=5.6
Q ss_pred ccEEECcCCccc
Q 048443 203 LRMVDLSHNLLQ 214 (486)
Q Consensus 203 L~~L~L~~N~l~ 214 (486)
|++||+++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.015 Score=28.67 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=6.0
Q ss_pred CCcEEEccCCCCCC
Q 048443 100 NFSYLNLSKNYFPR 113 (486)
Q Consensus 100 ~L~~L~Ls~N~l~~ 113 (486)
+|+.|++++|++++
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555544
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.0044 Score=59.07 Aligned_cols=61 Identities=25% Similarity=0.186 Sum_probs=39.4
Q ss_pred cCcccEEEcccccccc--cCccchhccCCCCeeeCCCcccCccC-----chhccCCCCCCEEeCCCCC
Q 048443 327 PDILKGIILSSNRFDG--EMPTSIANLKGLQVLGLASNNLQGHI-----PSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+.|+.+++.++.... .+...-.+.+.|++|.|+++...... ...-..+..|+.+.|++++
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 4678888888776531 12222345788999999988754222 2223456778888888887
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.014 Score=59.41 Aligned_cols=59 Identities=25% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCCccEEECcCCc-cccccCccCcC-CCCCCEEEccCCc-cccCCCcc-ccCCCCCCEEEcCc
Q 048443 200 GSDLRMVDLSHNL-LQGKIPKSLAN-CAVLEISDLRNNQ-INDTFPIW-LGSLLELNILVLIQ 258 (486)
Q Consensus 200 l~~L~~L~L~~N~-l~~~~p~~~~~-l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~ 258 (486)
+++|+.|++++.. ++...-..+.. +++|++|.+.++. +++..-.. ...++.|+.|+++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 4555566665555 33222122222 5566666655444 33221111 22355566666554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.12 Score=28.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=11.6
Q ss_pred CCCCeeeCCCcccCccCchhc
Q 048443 352 KGLQVLGLASNNLQGHIPSCL 372 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~ 372 (486)
++|+.|+|++|+|+...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.12 Score=28.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=11.6
Q ss_pred CCCCeeeCCCcccCccCchhc
Q 048443 352 KGLQVLGLASNNLQGHIPSCL 372 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~ 372 (486)
++|+.|+|++|+|+...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.0017 Score=65.23 Aligned_cols=188 Identities=22% Similarity=0.171 Sum_probs=103.9
Q ss_pred CCCEeeCcCCCCCCCCc----ccccCCCCCCeeccCCCCcccccCCchhccc--cC-CCCcEEEccCCCCCCCCCCCCCC
Q 048443 49 QLQWLDLAFNNFLRELP----ASIGSLSSLERLDTFPPMKIHGNIPKWLLNP--SM-KNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~--~l-~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
.+..|.|.+|.+..... ..+.....|+.|+++ .|.+.+.--..+... .. ..|++|++..|.++....- .+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~-~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l 164 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS-GNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PL 164 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcc-cCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HH
Confidence 36677777777655433 234556777777777 776663322211111 02 3456667777766532110 01
Q ss_pred Ccccc-cCccCeeecccCcccc----cCCcccc----CCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEccCcc
Q 048443 122 PWTTL-STKIRHYLISKNNLTG----EIPSWIC----NLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQGKN 188 (486)
Q Consensus 122 p~~~~-~~~L~~L~Ls~n~l~~----~~~~~~~----~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~~n~ 188 (486)
.+.+. ...+++++++.|.+.. .++..+. ...++++|.+++|.++... ...+......+..+++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 11122 4566777777776631 1222333 4667778888877766211 11222222225557777777
Q ss_pred cccc----CCccccCC-CCccEEECcCCcccccc----CccCcCCCCCCEEEccCCcccc
Q 048443 189 FFGT----TPDTFMNG-SDLRMVDLSHNLLQGKI----PKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 189 i~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+.+. ....+..+ ..+++++++.|.|+... ...+..++.++++.++.|.+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 7543 22234444 56788888888887433 3344566788888888888764
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.028 Score=57.30 Aligned_cols=62 Identities=24% Similarity=0.212 Sum_probs=31.2
Q ss_pred cCccCeeecccCc-ccccCCcccc-CCCCCCEEECcCCc-Ccccccchhhh-cCCCCcEEEccCccc
Q 048443 127 STKIRHYLISKNN-LTGEIPSWIC-NLSSLYVLDLSDNN-LSGELLQCLGN-FSGGLSVLSLQGKNF 189 (486)
Q Consensus 127 ~~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~-i~~~~~~~l~~-~~~~L~~L~L~~n~i 189 (486)
+.+|+.|+++++. ++...-..+. .+++|++|.+.++. ++...-..+.. .+. |++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~-L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPS-LRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCc-ccEEeeecCcc
Confidence 5666666666666 4322212222 25667776665555 44322222222 333 77777766554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.0065 Score=53.41 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=48.5
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
....+.||++.|++. ..-..|.-++.|..||++.|++. ..|..++.... +..+++..|..+ ..|.++...+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e-~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRE-TVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHH-HHHHHhhccchh-hCCccccccCCcchh
Confidence 455666666666665 34445555666666777766665 55665555554 555555554443 345555556666666
Q ss_pred ECcCCccc
Q 048443 207 DLSHNLLQ 214 (486)
Q Consensus 207 ~L~~N~l~ 214 (486)
++.+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 66555544
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.22 Score=27.58 Aligned_cols=17 Identities=59% Similarity=0.843 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCCCCCCC
Q 048443 376 TNLESLDLSKNRLTFLE 392 (486)
Q Consensus 376 ~~L~~L~Ls~N~l~~L~ 392 (486)
++|++|++++|++++++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555544443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.27 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=11.7
Q ss_pred CCCCEeeCcCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFLRELPASI 68 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~ 68 (486)
++|++|+|++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444433
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.27 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=11.7
Q ss_pred CCCCEeeCcCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFLRELPASI 68 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~ 68 (486)
++|++|+|++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444433
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.0022 Score=64.46 Aligned_cols=181 Identities=23% Similarity=0.185 Sum_probs=113.1
Q ss_pred CCeeccCCCCcccccCC----chhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c-CccCeeecccCccccc----
Q 048443 74 LERLDTFPPMKIHGNIP----KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S-TKIRHYLISKNNLTGE---- 143 (486)
Q Consensus 74 L~~L~L~~~n~i~~~~p----~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~-~~L~~L~Ls~n~l~~~---- 143 (486)
+..|+|. +|.+..... ..+.. ...|+.|++++|.+..... .. +-.... . ..+++|++..|.+++.
T Consensus 89 l~~L~L~-~~~l~~~~~~~l~~~l~t--~~~L~~L~l~~n~l~~~g~-~~-l~~~l~~~~~~l~~L~l~~c~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLA-NNRLGDRGAEELAQALKT--LPTLGQLDLSGNNLGDEGA-RL-LCEGLRLPQCLLQTLELVSCSLTSEGAAP 163 (478)
T ss_pred HHHhhhh-hCccccchHHHHHHHhcc--cccHhHhhcccCCCccHhH-HH-HHhhcccchHHHHHHHhhcccccccchHH
Confidence 7788888 888775433 34444 7788889999998872110 00 000111 1 4577788888888753
Q ss_pred CCccccCCCCCCEEECcCCcCcc----cccchhhh---cCCCCcEEEccCccccccC----CccccCCCC-ccEEECcCC
Q 048443 144 IPSWICNLSSLYVLDLSDNNLSG----ELLQCLGN---FSGGLSVLSLQGKNFFGTT----PDTFMNGSD-LRMVDLSHN 211 (486)
Q Consensus 144 ~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~l~~---~~~~L~~L~L~~n~i~~~~----~~~~~~l~~-L~~L~L~~N 211 (486)
+...+....+++.+|++.|.+.. .++..+.. ...++++|.+++|.++... ...+...+. +..+++..|
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 34456667888889998888742 22333343 2223888888888876321 223444455 677889888
Q ss_pred ccccc----cCccCcCC-CCCCEEEccCCccccCCCc----cccCCCCCCEEEcCcc
Q 048443 212 LLQGK----IPKSLANC-AVLEISDLRNNQINDTFPI----WLGSLLELNILVLIQQ 259 (486)
Q Consensus 212 ~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~n 259 (486)
.+.+. ....+..+ ..++.++++.|.|.+.... .+..++.++.+.+..|
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 87643 12234444 6778899999988765443 3445667888887776
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.013 Score=51.48 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=51.2
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
...-+.||++.|++..+ ...+. ++.+..|+++.|++. ..|..+..+..+..+++..|..+ ..|.+++..+
T Consensus 41 ~kr~tvld~~s~r~vn~-------~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-------GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred cceeeeehhhhhHHHhh-------ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 45556666666655432 22333 566666677777666 56666666666667777666666 5666666666
Q ss_pred CCCcEEEccCccc
Q 048443 177 GGLSVLSLQGKNF 189 (486)
Q Consensus 177 ~~L~~L~L~~n~i 189 (486)
. ++++++-+|.+
T Consensus 112 ~-~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 H-PKKNEQKKTEF 123 (326)
T ss_pred C-cchhhhccCcc
Confidence 5 66666666654
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.19 Score=27.15 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=5.2
Q ss_pred CCCEEECcCCcCc
Q 048443 153 SLYVLDLSDNNLS 165 (486)
Q Consensus 153 ~L~~L~Ls~N~i~ 165 (486)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
|
... |
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=83.25 E-value=0.86 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=13.4
Q ss_pred CCCcEEEccCCCCCCCCC
Q 048443 99 KNFSYLNLSKNYFPRFDQ 116 (486)
Q Consensus 99 ~~L~~L~Ls~N~l~~~~~ 116 (486)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888887665
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.08 E-value=0.18 Score=43.65 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=19.6
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCc
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNN 163 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 163 (486)
..++.+|-++..|...--..+.+++.++.|.+.++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345666666666654444445555555555555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 486 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-21 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 6e-21 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-07 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 1e-83
Identities = 116/464 (25%), Positives = 176/464 (37%), Gaps = 79/464 (17%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPA-SIGSLSSLERLDTFPPMKIHGNIPKWLL 94
F G +PP G+ + L+ L L+ NNF ELP ++ + L+ LD + G +P+ L
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD-LSFNEFSGELPESLT 364
Query: 95 NPSMKNFSYLNLSKNYF----PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICN 150
N S + L+LS N F ++ + N TG+IP + N
Sbjct: 365 NLSA-SLLTLDLSSNNFSGPILPNL-------CQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 151 LSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210
S L L LS N LSG + LG+ S L L L G P M L + L
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 211 NLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL------------IQ 258
N L G+IP L+NC L L NN++ P W+G L L IL L +
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 259 QLPC----------FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQN 308
F G +P+ F+ + + RY+ + + +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY-IKNDGMKKECHGAGNLL 594
Query: 309 DYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHI 368
++ S + ++ ++S + G + N + L ++ N L G+I
Sbjct: 595 EFQGIRSEQLNRLST------RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 369 PSCLGSLTNLESLDLSKNRLT-----------FLEFFNATHNNLTGPIPQA--------- 408
P +GS+ L L+L N ++ L + + N L G IPQA
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 409 ---------------NQFPTFGYSSFNGNSRLCGKPLPKECASD 437
QF TF + F N LCG PLP+ S+
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 4e-47
Identities = 86/395 (21%), Positives = 145/395 (36%), Gaps = 66/395 (16%)
Query: 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKW 92
L+ + SL +L L+ L L+ ++ + +SL LD + G +
Sbjct: 62 LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD-LSRNSLSGPVTTL 119
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWIC--- 149
S +LN+S N P + + +S N+++G
Sbjct: 120 TSLGSCSGLKFLNVSSNTL----DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175
Query: 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209
L L +S N +SG++ + L L + NF P + S L+ +D+S
Sbjct: 176 GCGELKHLAISGNKISGDV--DVSRCV-NLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231
Query: 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPS 269
N L G ++++ C L++ ++ +NQ P L L L L + F G++P
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK--FTGEIPD 287
Query: 270 KYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKI 326
L + N F S
Sbjct: 288 FL--------SGACDTLTGLDLSGNHFYGAVPPFFGS----------CSL---------- 319
Query: 327 PDILKGIILSSNRFDGEMPT-SIANLKGLQVLGLASNNLQGHIPSCLGSLT-NLESLDLS 384
L+ + LSSN F GE+P ++ ++GL+VL L+ N G +P L +L+ +L +LDLS
Sbjct: 320 ---LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 385 KNRLT-------------FLEFFNATHNNLTGPIP 406
N + L+ +N TG IP
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 5e-47
Identities = 100/428 (23%), Positives = 151/428 (35%), Gaps = 94/428 (21%)
Query: 6 CSELTRLTI----LLFYLMTSDSPFLDRLQRLS----DFSGQIPPSL---GNLNQLQWLD 54
CS L L + L F S L+ L+ L SG +L+ L
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 55 LAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRF 114
++ N ++ + +LE LD IP +L + +L++S N
Sbjct: 185 ISGNKISGDVD--VSRCVNLEFLD-VSSNNFSTGIP-FLGD--CSALQHLDISGNKL--- 235
Query: 115 DQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGN 174
+ T+++ IS N G IP L SL L L++N +GE+ L
Sbjct: 236 --SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 175 FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPK-SLANCAVLEISDLR 233
L+ L L G +F+G P F + S L + LS N G++P +L L++ DL
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 234 NNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---E 290
N+ + P L +L S+ L +
Sbjct: 352 FNEFSGELPESLTNL----------------------------------SASLLTLDLSS 377
Query: 291 NFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIAN 350
N S + + + + N N F G++P +++N
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQN---------------------NGFTGKIPPTLSN 416
Query: 351 LKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT-----------FLEFFNATHN 399
L L L+ N L G IPS LGSL+ L L L N L LE N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 400 NLTGPIPQ 407
+LTG IP
Sbjct: 477 DLTGEIPS 484
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 5e-43
Identities = 87/386 (22%), Positives = 143/386 (37%), Gaps = 68/386 (17%)
Query: 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFS 102
+ + N + +S+ SL+ LE L I+G++ + + +
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF-LSNSHINGSVSGFK---CSASLT 103
Query: 103 YLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIP-SWICNLSSLYVLDL 159
L+LS+N V T+L + ++ +S N L S L+SL VLDL
Sbjct: 104 SLDLSRNSL-----SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 160 SDNNLSGELLQCLGNFS--GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI 217
S N++SG + G L L++ G G +L +D+S N I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216
Query: 218 PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNA 277
P L +C+ L+ D+ N+++ F + + EL +L + F+G +P
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ--FVGPIPP-------- 265
Query: 278 MKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGII 334
L+Y+ EN + L G+
Sbjct: 266 ---LPLKSLQYLSLAENKFTGEIPDFLSGACDT----------------------LTGLD 300
Query: 335 LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP-SCLGSLTNLESLDLSKNRLT---- 389
LS N F G +P + L+ L L+SNN G +P L + L+ LDLS N +
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 390 --------FLEFFNATHNNLTGPIPQ 407
L + + NN +GPI
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILP 386
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-28
Identities = 56/276 (20%), Positives = 103/276 (37%), Gaps = 54/276 (19%)
Query: 149 CNLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205
C + +DLS L+ + L + +G L L L + G+ F + L
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTG-LESLFLSNSHINGSVSG-FKCSASLTS 104
Query: 206 VDLSHNLLQGKIP--KSLANCAVLEISDLRNNQINDTFPI-WLGSLLELNILVLIQQLPC 262
+DLS N L G + SL +C+ L+ ++ +N ++ + L L +L L
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-- 162
Query: 263 FMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319
G + +L+++ N +S + +S
Sbjct: 163 ISGANVVGWVL------SDGCGELKHLAISGNKISG---------------DVDVSR--- 198
Query: 320 MMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLE 379
+ L+ + +SSN F +P + + LQ L ++ N L G + + T L+
Sbjct: 199 -CVN------LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 380 SLDLSKNRLT---------FLEFFNATHNNLTGPIP 406
L++S N+ L++ + N TG IP
Sbjct: 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP 286
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 5e-18
Identities = 40/211 (18%), Positives = 65/211 (30%), Gaps = 63/211 (29%)
Query: 13 TILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLS 72
++ L +F G L L+ ++ + + +
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 73 SLERLDTFPPM---KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTK 129
S+ LD M + G IPK + + M LNL
Sbjct: 633 SMMFLD----MSYNMLSGYIPKEIGS--MPYLFILNL----------------------- 663
Query: 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNF 189
N+++G IP + +L L +LDLS N L G + Q + +
Sbjct: 664 ------GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM------------ 705
Query: 190 FGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS 220
L +DLS+N L G IP+
Sbjct: 706 -------------LTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 338 NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNAT 397
N + +S+ +L GL+ L L+++++ G + +L SLDLS
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS------------- 108
Query: 398 HNNLTGPIPQANQF 411
N+L+GP+
Sbjct: 109 RNSLSGPVTTLTSL 122
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-49
Identities = 76/315 (24%), Positives = 105/315 (33%), Gaps = 57/315 (18%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELL--QCLGNFSGGLSVLSLQGKNFF-GT 192
G + + LDLS NL L N L+ L + G N G
Sbjct: 34 CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGP 92
Query: 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELN 252
P + L + ++H + G IP L+ L D N ++ T P + SL L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 253 ILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSI 312
+ G +P Y S+ N L+
Sbjct: 153 GITFDGNR--ISGAIPDSYGSFSKLFTSMTISR-----NRLTG----------------- 188
Query: 313 TMSNEGQMMTHDKIPDI-----LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367
KIP L + LS N +G+ + K Q + LA N+L
Sbjct: 189 ------------KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 368 IPSCLGSLTNLESLDLSKNRLT-----------FLEFFNATHNNLTGPIPQANQFPTFGY 416
+ +G NL LDL NR+ FL N + NNL G IPQ F
Sbjct: 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 417 SSFNGNSRLCGKPLP 431
S++ N LCG PLP
Sbjct: 296 SAYANNKCLCGSPLP 310
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 3e-35
Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 16/241 (6%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNF--LRELPASIGSLSSLERLDTFPPMKIHGNIPKWL 93
+ G + + ++ LDL+ N +P+S+ +L L L + G IP +
Sbjct: 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSS 153
+ YL ++ + + + + S N L+G +P I +L +
Sbjct: 98 AK--LTQLHYLYITHTNV-----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLL 213
L + N +SG + G+FS + +++ G P TF N + L VDLS N+L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209
Query: 214 QGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ-----QLPCFMGKLP 268
+G + + L N + +G LN L L LP + +L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 269 S 269
Sbjct: 269 F 269
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 8e-32
Identities = 56/235 (23%), Positives = 85/235 (36%), Gaps = 39/235 (16%)
Query: 27 LDRLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
L +L L + SG IP L + L LD ++N LP SI SL +L + F
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT-FDG 158
Query: 83 MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTG 142
+I G IP + S IS+N LTG
Sbjct: 159 NRISGAIPDSYGS------------------------------FSKLFTSMTISRNRLTG 188
Query: 143 EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202
+IP NL+ L +DLS N L G+ G+ + L + +
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI 257
L +DL +N + G +P+ L L ++ N + P G+L ++
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 36 FSGQIPPSLGNLNQL-QWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLL 94
SG IP S G+ ++L + ++ N ++P + +L+ L +D + G+
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD-LSRNMLEGDASVLFG 218
Query: 95 NPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSL 154
+ KN ++L+KN FD L LS + + N + G +P + L L
Sbjct: 219 S--DKNTQKIHLAKNSL-AFD-----LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG 186
+ L++S NNL GE+ Q GN V +
Sbjct: 271 HSLNVSFNNLCGEIPQ-GGNLQ-RFDVSAYAN 300
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 335 LSSNRFDGEMPTSIANLKGLQVLGLASNNLQG--HIPSCLGSLTNLESLDLSKN------ 386
+ + G + + + L L+ NL IPS L +L L L +
Sbjct: 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 387 ------RLTFLEFFNATHNNLTGPIP 406
+LT L + TH N++G IP
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIP 118
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 5e-40
Identities = 67/447 (14%), Positives = 131/447 (29%), Gaps = 88/447 (19%)
Query: 7 SELTRLTILLFY---LMTSDSPFLDRLQRLS--DFSGQIPPSLGNLNQLQWLDLAFNNFL 61
LT+L + + + NL L +++ L
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262
Query: 62 RELPASIGSLSSLERLD-------TFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRF 114
+LP + +L ++ ++ + +K + + + N
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV--GEKIQIIYIGYNNL--- 317
Query: 115 DQHPTVLPW-TTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQC 171
P T+L K+ N L G++P+ + L L+L+ N ++ +
Sbjct: 318 ----KTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPAN 371
Query: 172 LGNFSGGLSVLSLQGKNFFGTTPDTFMNGS--DLRMVDLSHNLLQG-------KIPKSLA 222
F+ + LS N P+ F S + +D S+N + + +
Sbjct: 372 FCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Query: 223 NCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQCWNAM 278
+ +L NNQI+ + L+ + L + ++P K ++
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE-------- 482
Query: 279 KFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIIL 335
F N+ L + N L+ + + T+ L GI L
Sbjct: 483 NFKNTYLLTSIDLRFNKLTK---------LSDDFRATTLPY-------------LVGIDL 520
Query: 336 SSNRFDGEMPTSIANLKGLQVLGL------ASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
S N F PT N L+ G+ N P + +L L + N +
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 390 F--------LEFFNATHNNLTGPIPQA 408
+ + N
Sbjct: 580 KVNEKITPNISVLDIKDNPNISIDLSY 606
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-34
Identities = 57/418 (13%), Positives = 127/418 (30%), Gaps = 88/418 (21%)
Query: 29 RLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNF----LRELPASIGSLSSLERLDTF 80
R+ LS SG++P ++G L +L+ L L + P I + S E+
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNL 140
M + + ++ + + + + ++ K NN+
Sbjct: 142 R-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS-----IKKSSRITLKDTQIGQLSNNI 195
Query: 141 TGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNG 200
T + + L+ L + ++ E + + + + T + N
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE------NENSEYAQQYKTEDLKWDNL 248
Query: 201 SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260
DL V++ + K+P L +++ ++ N+ + +QL
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR-----------------GISGEQL 291
Query: 261 PCFMGKLPSKYFQCWNAMKFANSSQLRY---MENFLSSYFSFDFYRYFPQNDYSITMSNE 317
L +++ N L + +
Sbjct: 292 KDDWQALAD----------APVGEKIQIIYIGYNNLKT----------------FPVETS 325
Query: 318 GQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377
Q M L + N+ +G++P + + L L LA N + + G
Sbjct: 326 LQKMKK------LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378
Query: 378 LESLDLSKNRLTF------------LEFFNATHNNLTGPIPQANQFPTFGYSSFNGNS 423
+E+L + N+L + + + ++N + F + F G +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFDPLDPTPFKGIN 434
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 8e-32
Identities = 60/450 (13%), Positives = 128/450 (28%), Gaps = 98/450 (21%)
Query: 7 SELTRLTILLFYLMTSDSPFLDRLQRLS------------DFSGQIPPSLGNLNQLQWLD 54
S M F+D R I S + +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189
Query: 55 LAFNNFLRELPASIGSLSSLERLDTFPPM---KIHGNIPKWLLNPSMKNFSYLNLSKNYF 111
NN + + ++ L+ L + M +N Y K
Sbjct: 190 QLSNN-ITFVSKAVMRLTKLRQFY----MGNSPFVAENICEAWE--NENSEYAQQYKTED 242
Query: 112 PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG----- 166
++D + + ++P+++ L + +++++ N
Sbjct: 243 LKWDN----------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292
Query: 167 ELLQCLGNFSGG--LSVLSLQGKNFF-GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLAN 223
+ Q L + G + ++ + N + L M++ +N L+GK+P + +
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351
Query: 224 CAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQCWNAMK 279
L +L NQI + + G ++ L ++ +P
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD-------------- 397
Query: 280 FANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILS 336
+ S + + N + S +F + + + I LS
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNF----------DPLDPTPFKGIN------VSSINLS 441
Query: 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQG-------HIPSCLGSLTNLESLDLSKNRLT 389
+N+ + L + L N L + L S+DL N+LT
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501
Query: 390 ------------FLEFFNATHNNLTGPIPQ 407
+L + ++N+ + P
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 9e-24
Identities = 54/378 (14%), Positives = 101/378 (26%), Gaps = 97/378 (25%)
Query: 37 SGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN----IPKW 92
+ + SL + +L L+ +N L + GS L L+ + N IP
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLN------LAYNQITEIPAN 371
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSW--ICN 150
+ L+ + N IP+ +
Sbjct: 372 FCG-FTEQVENLSFAHNKL------------------------------KYIPNIFDAKS 400
Query: 151 LSSLYVLDLSDNNLSGELLQCLGNFSGG------LSVLSLQGKNFFGTTPDTFMNGSDLR 204
+S + +D S N + + +S ++L + F GS L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 205 MVDLSHNLLQG-------KIPKSLANCAVLEISDLRNNQINDTFP-IWLGSLLELNILVL 256
++L N+L ++ N +L DLR N++ +L L + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520
Query: 257 ----IQQLPCFMGKLPS-KYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYS 311
+ P + K F N + LR ++
Sbjct: 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL---------------- 564
Query: 312 ITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSC 371
+ L + + SN + I + VL + N S
Sbjct: 565 --CPS-------------LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606
Query: 372 LGSLTNLESLDLSKNRLT 389
+ L ++
Sbjct: 607 VCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 9e-23
Identities = 39/252 (15%), Positives = 82/252 (32%), Gaps = 31/252 (12%)
Query: 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLD-----------TFP 81
L + Q SL + ++ L L +P +IG L+ LE L F
Sbjct: 66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125
Query: 82 PMKIHGNIPKWLLN-----------PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKI 130
P I N+ + +L K+ Q ++ + ++ K
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185
Query: 131 RHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190
NN+T + + L+ L + ++ E + + + +
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE------NENSEYAQQY 238
Query: 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN--DTFPIWLGSL 248
T + N DL V++ + K+P L +++ ++ N+ + +L
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298
Query: 249 LELNILVLIQQL 260
+ + IQ +
Sbjct: 299 ADAPVGEKIQII 310
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 31/229 (13%), Positives = 71/229 (31%), Gaps = 32/229 (13%)
Query: 38 GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLD------TFPPMKIHGNIPK 91
+ P+ + ++L+ N + + S L ++ T P + +
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482
Query: 92 WLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRH--YL-ISKNNLTGEIPSWI 148
N + ++L N T L +T + + + +S N+ + P+
Sbjct: 483 NFKN--TYLLTSIDLRFNKL-------TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532
Query: 149 CNLSSLYVL------DLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202
N S+L D N E + + L+ L + N + +
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS-LTQLQIGS-NDIRKVNEKIT--PN 588
Query: 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLEL 251
+ ++D+ N + + L ++ D I L++
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD---IRGCDALDI 634
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 15/92 (16%)
Query: 347 SIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR---------------LTFL 391
S+ + + L L G +P +G LT LE L L +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 392 EFFNATHNNLTGPIPQANQFPTFGYSSFNGNS 423
E + + F + +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-38
Identities = 75/441 (17%), Positives = 129/441 (29%), Gaps = 58/441 (13%)
Query: 29 RLQRLS----DFSGQIPPSLGNLN--QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
++ LS S + L L LDL++NN S L LE
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF-LEY 281
Query: 83 MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP--TVLPWTTLS--TKIRHYLISKN 138
I L + N YLNL +++ + + + + H + N
Sbjct: 282 NNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 139 NLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSG----GLSVLSLQGKNFFGTTP 194
++ G + L +L L LS++ S L F L +L+L
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-TNETFVSLAHSPLHILNLTKNKISKIES 398
Query: 195 DTFMNGSDLRMVDLSHNLLQGKIPKS-LANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
D F L ++DL N + ++ + L N+ + L
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Query: 254 LVL-------IQQLPCFMGKLPS--------KYFQCWNAMKFANSSQLRYMENFLSSYFS 298
L+L + P L + N +L +
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL------DLQ 512
Query: 299 FDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLG 358
+ ++ + ++H L + L SN FD +L L+++
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSH------LHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 359 LASNNLQGHIPSCLGSLTNLESLDLSKNRLT------------FLEFFNATHNNLTGPIP 406
L NNL S + +L+SL+L KN +T L + N
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Query: 407 QANQFPTFGYSSFNGNSRLCG 427
F + + L
Sbjct: 627 SIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-37
Identities = 75/419 (17%), Positives = 129/419 (30%), Gaps = 48/419 (11%)
Query: 27 LDRLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
L L+ L+ + S + L L L N+ + +L LD
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD---- 127
Query: 83 M---KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP-TVLPWTTLSTKIRHYLISKN 138
+ + + ++N L LS N + ++L + +S N
Sbjct: 128 LSHNGLSSTKLGTQVQ--LENLQELLLSNNKIQALKSEELDIFANSSL----KKLELSSN 181
Query: 139 NLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGG--LSVLSLQGKNFFGTTPDT 196
+ P + L+ L L++ L L + L + LSL T+ T
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 197 F--MNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNIL 254
F + ++L M+DLS+N L S A LE L N I F L L + L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301
Query: 255 VLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYR-------Y 304
L + + + F L ++ N + S F
Sbjct: 302 NLKRSF--TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 305 FPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364
+ S+ ++ P L + L+ N+ + + L L+VL L N +
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSP--LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
Query: 365 QGHIP-SCLGSLTNLESLDLSKNRLTF-----------LEFFNATHNNLTGPIPQANQF 411
+ L N+ + LS N+ L+ L + F
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 72/409 (17%), Positives = 120/409 (29%), Gaps = 81/409 (19%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN----IPK 91
+ +QL LD+ FN + P L L+ L+ + N +
Sbjct: 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN------LQHNELSQLSD 90
Query: 92 WLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWIC 149
N + L+L N + + +S N L+
Sbjct: 91 KTFA-FCTNLTELHLMSNSI-------QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 150 NLSSLYVLDLSDNNLSG---ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206
L +L L LS+N + E L N S L L L +P F L +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSS--LKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 207 DLSHNLLQGKIPKSLA---NCAVLEISDLRNNQINDTFPIWLGSLLELNILVL------I 257
L++ L + + L + L N+Q++ T L N+ +L +
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 258 QQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITM 314
+ FA QL Y N + FS + +
Sbjct: 261 NVVGNDS---------------FAWLPQLEYFFLEYNNIQHLFSHSLH----------GL 295
Query: 315 SNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGS 374
N + + + +S S LK L+ L + N++ G +
Sbjct: 296 FN----VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 375 LTNLESLDLSKNRLTF---------------LEFFNATHNNLTGPIPQA 408
L NL+ L LS + + L N T N ++ A
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-19
Identities = 55/327 (16%), Positives = 99/327 (30%), Gaps = 77/327 (23%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
S LT ++P + +++ VL+L+ N L +S L+ L + P+
Sbjct: 12 SHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQ-LTSLDVGFNTISKLEPE 67
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILV 255
L++++L HN L K+ A C L L +N I L L
Sbjct: 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127
Query: 256 L----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQN 308
L + L+ + N + + S + + +
Sbjct: 128 LSHNGLSSTK---------------LGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172
Query: 309 DYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHI 368
LK + LSSN+ P + L L L + L +
Sbjct: 173 ---------------------LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211
Query: 369 PSCLG---SLTNLESLDLSKNRLTF-------------LEFFNATHNNLTGPIPQA---- 408
L + T++ +L LS ++L+ L + ++NNL +
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271
Query: 409 ----------NQFPTFGYSSFNGNSRL 425
N S +G +
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNV 298
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 335 LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF---- 390
S + ++P + + VL L N L+ + + L SLD+ N ++
Sbjct: 11 CSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 391 -------LEFFNATHNNLTGPIPQA 408
L+ N HN L+ +
Sbjct: 68 LCQKLPMLKVLNLQHNELSQLSDKT 92
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-37
Identities = 67/462 (14%), Positives = 127/462 (27%), Gaps = 79/462 (17%)
Query: 7 SELTRLTILLFY--LMTSDSPFLDRLQRLSD---FSGQIPPSLGNLNQLQWLDLAFNNFL 61
LT+L I+ F T D+ +D SD S NL L ++L +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504
Query: 62 RELPASIGSLSSLERLD--------TFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPR 113
+LP + L L+ L+ + + N
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT--GPKIQIFYMGYNNLEE 562
Query: 114 FDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLG 173
F ++ L N + + + L L L N + E+ +
Sbjct: 563 FPASASLQKMVKL----GLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFC 615
Query: 174 NFSGGLSVLSLQGKNFFGTTPDTFMNGS--DLRMVDLSHNLLQGKIPKSLA-----NCAV 226
F+ + L N P+ F S + VD S+N + +
Sbjct: 616 AFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674
Query: 227 LEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQCWNAMKFAN 282
L N+I + ++ ++L + +P K ++ + +
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Query: 283 SSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342
N L+S + + T+ L + +S N F
Sbjct: 735 LR-----FNKLTS---------LSDDFRATTLPY-------------LSNMDVSYNCFS- 766
Query: 343 EMPTSIANLKGLQVLGL------ASNNLQGHIPSCLGSLTNLESLDLSKNRLTF------ 390
PT N L+ G+ N + P+ + + +L L + N +
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826
Query: 391 --LEFFNATHNNLT-GPIPQANQFPTFGYSSF--NGNSRLCG 427
L + N + + G + + G
Sbjct: 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 9e-31
Identities = 53/415 (12%), Positives = 113/415 (27%), Gaps = 94/415 (22%)
Query: 31 QRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLD-------TFPPM 83
+ L + Q L N ++ L LA +P +IG L+ L+ L +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Query: 84 KIHGNIPKWLLN---------------PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST 128
+ + + + +L ++ R + + + +S
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425
Query: 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN 188
K N +T I I L+ L ++ +++ + + N + +
Sbjct: 426 KDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYD------NIAVDWEDANSDYAK 478
Query: 189 FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSL 248
+ ++ N DL V+L + ++P L + L+ ++ N+
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS--------- 529
Query: 249 LELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYF 305
QL +L +++ N L F
Sbjct: 530 --------AAQLKADWTRLAD---------DEDTGPKIQIFYMGYNNLEE---------F 563
Query: 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365
P + M L + N+ + L L L N ++
Sbjct: 564 PASASLQKMVK-------------LGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608
Query: 366 GHIPSCLGSLTNLESLDLSKNRLT------------FLEFFNATHNNLTGPIPQA 408
+E L S N+L + + ++N +
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 65/411 (15%), Positives = 126/411 (30%), Gaps = 69/411 (16%)
Query: 29 RLQRLSDFSGQIPPSLGNLNQLQWLDLAFN-------------------NFLRELPASIG 69
++ L++ I ++ L +LQ + A + S
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488
Query: 70 SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF---PRFDQHPTVLPWTTL 126
+L L ++ +P +L + + LN++ N + T L
Sbjct: 489 NLKDLTDVE-LYNCPNMTQLPDFLYD--LPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 127 S-TKIRHYLISKNNLTGEIPSW-ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSL 184
+ KI+ + + NNL S + + L +LD N + L+ G L+ L L
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNV-KLTDLKL 602
Query: 185 QGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPK--SLANCAVLEISDLRNNQINDTFP 242
D + + SHN L+ IP + + V+ D N+I +
Sbjct: 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIG-SEG 660
Query: 243 IWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSF 299
+ ++ + + L Q + FA S + + N ++S
Sbjct: 661 RNISCSMDDYKGINASTV-----TLSYNEIQKFPTELFATGSPISTIILSNNLMTS---- 711
Query: 300 DFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIA--NLKGLQVL 357
P+N N L I L N+ + L L +
Sbjct: 712 -----IPENSLKPKDGNYKNTYL-------LTTIDLRFNKL-TSLSDDFRATTLPYLSNM 758
Query: 358 GLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQA 408
++ N P+ + + L++ + R +A N + P
Sbjct: 759 DVSYNCFS-SFPTQPLNSSQLKAFGIRHQR-------DAEGNRILRQWPTG 801
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 31/235 (13%), Positives = 61/235 (25%), Gaps = 37/235 (15%)
Query: 183 SLQGKN--FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240
+L GKN ++ T + ++ + + ++ + L N + L
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338
Query: 241 FPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSY-FSF 299
P +G L EL +L + +
Sbjct: 339 VPDAIGQLTELKVLSF-------------------------GTHSETVSGRLFGDEELTP 373
Query: 300 DFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGL 359
D + D+L+ I + S +LK Q+ L
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433
Query: 360 ASNNLQGHIPSCLGSLTNLESLDLSKNRLT------FLEFFNATHNNLTGPIPQA 408
N I + LT L+ + + + T E N+ + +
Sbjct: 434 --TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 5e-29
Identities = 70/419 (16%), Positives = 126/419 (30%), Gaps = 64/419 (15%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPM---KIHGNIPKW 92
S + +LQ LDL+ + SLS L L + I
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI----LTGNPIQSLALGA 95
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTG-EIPSWIC 149
+ + L + L + ++ ++ N + ++P +
Sbjct: 96 FSG--LSSLQKLVAVETNL-------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 150 NLSSLYVLDLSDNNLSG---ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206
NL++L LDLS N + L+ L L L P F L +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKL 205
Query: 207 DLSHNLLQGKIPK-SLANCAVLEISDLRNNQINDTFPIW------LGSLLELNILVL-IQ 258
L +N + K + A LE+ L + + + L L L I +
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Query: 259 QLPCFMGKLPSKYFQCWN-------------AMKFANSSQLRY--MENFLSSYFSFDFYR 303
L ++ + + N F+ + ++ + N F +
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325
Query: 304 YFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNR--FDGEMPTSIANLKGLQVLGLAS 361
+ ++ SN+G + L+ + LS N F G S L+ L L+
Sbjct: 326 SLKRLTFT---SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 362 NNLQGHIPSCLGSLTNLESLDLSKNRLT------------FLEFFNATHNNLTGPIPQA 408
N + + S L LE LD + L L + + +H +
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 50/252 (19%), Positives = 88/252 (34%), Gaps = 20/252 (7%)
Query: 6 CSELTRLTILLFYLMTSDSPFLDRLQRL--SDFSGQIPPSLGNLNQLQWLDLAFN--NFL 61
L ++ + L L+RL + G S +L L++LDL+ N +F
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 62 RELPASIGSLSSLERLDTFPPM---KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118
S +SL+ LD + + +L ++ +L+ + + +
Sbjct: 363 GCCSQSDFGTTSLKYLD----LSFNGVITMSSNFLGLEQLE---HLDFQHSNLKQMSEFS 415
Query: 119 TVLPWTTLSTKIRHYL-ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSG 177
L L YL IS + LSSL VL ++ N+ L +
Sbjct: 416 VFLSLRNL-----IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 178 GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237
L+ L L +P F + S L+++++SHN L++ D N I
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 238 NDTFPIWLGSLL 249
+ L
Sbjct: 531 MTSKKQELQHFP 542
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 68/391 (17%), Positives = 114/391 (29%), Gaps = 44/391 (11%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPA-SIGSLSSLERLDTFPPMKIHGNIPKWLLNPS 97
I P +L L L N + I L+ LE + + +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 98 MKNFSYLNLSKNYFPRFDQHPTVLPWT-TLSTKIRHYLISKNNLTGEIPSWICNLSSLYV 156
++ L + + D + + T + + + +
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQH 308
Query: 157 LDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ-- 214
L+L + L + L + G + ++ L +DLS N L
Sbjct: 309 LELVNCKFGQFPTLKLKSL------KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQC 274
G +S L+ DL N + T L +L L S Q
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH----------SNLKQM 411
Query: 275 WNAMKFANSSQLRYMENFLSS-YFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKG- 332
F + L Y+ +S + F F + G + +PDI
Sbjct: 412 SEFSVFLSLRNLIYL--DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 333 -----IILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387
+ LS + + PT+ +L LQVL ++ NN L +L+ LD S N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Query: 388 LT------------FLEFFNATHNNLTGPIP 406
+ L F N T N+
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-24
Identities = 66/375 (17%), Positives = 125/375 (33%), Gaps = 33/375 (8%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPS- 97
+IP +L + LDL+FN S S L+ LD + + + + +
Sbjct: 21 KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD------LSRCEIQTIEDGAY 72
Query: 98 --MKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSS 153
+ + S L L+ N L S + ++ + + NL I +L +
Sbjct: 73 QSLSHLSTLILTGNPI-------QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 154 LYVLDLSDNNL-SGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV----DL 208
L L+++ N + S +L + N + L L L + ++ DL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 209 SHNLLQGKIPKSLANCAVLEISDLRNNQIN-DTFPIWLGSLLELNILVLIQQLPCFMGKL 267
S N + P + + ++ LRNN + + + L L + L+ G L
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKL-TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 268 PSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIP 327
+ + R D + +S + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387
+ + L + +F + +LK L + +G L +LE LDLS+N
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 388 LTFLEFFNATHNNLT 402
L+F + + T
Sbjct: 359 LSFKGCCSQSDFGTT 373
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 4e-17
Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 43/282 (15%)
Query: 133 YLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192
Y + N +IP + S LDLS N L +F L VL L
Sbjct: 12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTI 67
Query: 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELN 252
+ + S L + L+ N +Q + + + L+ + +G L L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 253 ILVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYF 305
L + IQ LP F+N + L ++ N + S + D
Sbjct: 128 ELNVAHNLIQSFK-----LPE---------YFSNLTNLEHLDLSSNKIQSIYCTDL---- 169
Query: 306 PQNDYSITMSNEGQMMTHDKIPDI---------LKGIILSSNRFDGEMP-TSIANLKGLQ 355
+ + + + N ++ + + I L + L +N + T I L GL+
Sbjct: 170 -RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 356 VLGLASNNLQGHI---PSCLGSLTNLESLDLSKNRLTFLEFF 394
V L + +L L +L + + RL +L+++
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 9e-17
Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 31/240 (12%)
Query: 9 LTRLTIL-----LFYLMTSDSPFLDRLQRLS----DFSGQIPPS-LGNLNQLQWLDLAFN 58
T L L M+S+ L++L+ L + S +L L +LD++
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 59 NFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPS----MKNFSYLNLSKNYFPRF 114
+ LSSLE L + GN + P ++N ++L+LS+
Sbjct: 432 HTRVAFNGIFNGLSSLEVLK------MAGNSFQENFLPDIFTELRNLTFLDLSQCQL--- 482
Query: 115 DQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCL 172
L T + + ++ +S NN L+SL VLD S N++ Q L
Sbjct: 483 ----EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 173 GNFSGGLSVLSLQGKNFFGTTPDTFMNG--SDLRMVDLSHNLLQGKIPKSLANCAVLEIS 230
+F L+ L+L +F T D R + + ++ P VL ++
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 598
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
+P K + LS N S + LQVL L+ +Q SL++L +L L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 386 NRLTF-----------LEFFNATHNNLTGPIPQA 408
N + L+ A NL
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 8e-27
Identities = 63/381 (16%), Positives = 120/381 (31%), Gaps = 63/381 (16%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN-----IP 90
+ L L +LDL + S L+ L + N
Sbjct: 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV------LTANPLIFMAE 98
Query: 91 KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWI 148
L K +L + + + + L + + N+++
Sbjct: 99 TALSG--PKALKHLFFIQTGI-------SSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149
Query: 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ-GKNFFGTTPDTFMNGSDLRMVD 207
L VLD +N + + + + + LSL N + + + ++
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208
Query: 208 LSHNLLQGKIPKSLANCAV--LEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMG 265
I K L N + L + + D P L E+++ +
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI--------- 259
Query: 266 KLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQNDYSITMSNEGQMMT 322
L YF ++ F S L+ ++ LS + + ++
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSE------------------LPSGLVGLS 301
Query: 323 HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS-CLGSLTNLESL 381
LK ++LS+N+F+ S +N L L + N + + + CL +L NL L
Sbjct: 302 T------LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 382 DLSKNRLTFLEFFNATHNNLT 402
DLS + + + N NL+
Sbjct: 356 DLSHDDIETSDCCNLQLRNLS 376
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 84/436 (19%), Positives = 146/436 (33%), Gaps = 77/436 (17%)
Query: 7 SELTRLTIL------LFYLMTSDSPFLDRLQRLS-DFSG----QIPPSLGNLNQLQWLDL 55
+L +L + YL D L + LS + +G I P + Q L+
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209
Query: 56 AFNNFLRELPASIG--SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPR 113
L + + ++ SL F M P + +NL K+YF
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGT-FEDMDDEDISPAVFEGLCEMSVESINLQKHYF-- 266
Query: 114 FDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQC 171
+ T + ++ ++ +L+ E+PS + LS+L L LS N
Sbjct: 267 -----FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 172 LGNFSGGLSVLSLQGKNFFGT-TPDTFMNGSDLRMVDLSHNLLQ--GKIPKSLANCAVLE 228
NF L+ LS++G N +LR +DLSH+ ++ L N + L+
Sbjct: 321 ASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379
Query: 229 ISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288
+L N+ +L +L L + ++ F N L+
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAF---TRLKVKDAQSP-------FQNLHLLKV 429
Query: 289 M---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRF---DG 342
+ + L F + L+ + L N F +
Sbjct: 430 LNLSHSLLDISSEQLFDG----------LPA-------------LQHLNLQGNHFPKGNI 466
Query: 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFF-------- 394
+ S+ L L++L L+ +L SL + +DLS NRLT
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526
Query: 395 --NATHNNLTGPIPQA 408
N N+++ +P
Sbjct: 527 YLNLASNHISIILPSL 542
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 69/408 (16%), Positives = 125/408 (30%), Gaps = 67/408 (16%)
Query: 27 LDRLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
L+ L S L N L+ L L N+ L+ LD
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD---- 159
Query: 83 M---KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNN 139
IH + + + LNL+ N + P S +
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE------PGAFDSAVFQSLNFGGTQ 213
Query: 140 LTGEIPSWI--CNLSSLYVLDLSDNNLSGELLQCLGNFSG-GLSVLSLQGKNFFGTTPDT 196
I + + SL++ D + + ++LQ FF + +T
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273
Query: 197 FMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
F S L+ +DL+ L ++P L + L+ L N+ + I + L L +
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 257 IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSIT 313
+ +L + + N LR + + + + S
Sbjct: 333 --KGNTKRLELGTGCLE--------NLENLRELDLSHDDIET---------------SDC 367
Query: 314 MSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP-SCL 372
+ + + ++H L+ + LS N + L++L LA L+ S
Sbjct: 368 CNLQLRNLSH------LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 373 GSLTNLESLDLSKNRLTF-----------LEFFNATHNNLTGPIPQAN 409
+L L+ L+LS + L L+ N N+ Q
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-21
Identities = 76/394 (19%), Positives = 139/394 (35%), Gaps = 71/394 (18%)
Query: 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN--- 88
D S + L ++ ++ ++L + F + S L+ LD +
Sbjct: 239 DDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELD------LTATHLS 291
Query: 89 -IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIP 145
+P L+ + L LS N F L + S + H I N E+
Sbjct: 292 ELPSGLVG--LSTLKKLVLSANKF-------ENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 146 SW-ICNLSSLYVLDLSDNNLSGELLQCLGNFSG--GLSVLSLQGKNFFGTTPDTFMNGSD 202
+ + NL +L LDLS +++ C L L+L + F
Sbjct: 343 TGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 203 LRMVDLSHNLLQGKIPKS-LANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ-QL 260
L ++DL+ L+ K +S N +L++ +L ++ ++ + L L L L
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 261 PCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNE 317
P + + +L + LSS Q+ ++
Sbjct: 462 PKGNIQKTNS---------LQTLGRLEILVLSFCDLSS---------IDQHAFTSLKM-- 501
Query: 318 GQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377
+ + LS NR ++++LKG+ L LASN++ +PS L L+
Sbjct: 502 ------------MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548
Query: 378 LESLDLSKNRLT-------FLEFFNATHNNLTGP 404
+++L +N L FLE++ L
Sbjct: 549 QRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDT 582
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-20
Identities = 50/322 (15%), Positives = 88/322 (27%), Gaps = 34/322 (10%)
Query: 103 YLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS 160
L S N + TT S + +++ + + L L L+
Sbjct: 37 CLEFSFNVL-------PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89
Query: 161 DNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS 220
N L L L L N L + L N +
Sbjct: 90 ANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148
Query: 221 LANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKF 280
L++ D +NN I+ + SL + L L + + A
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-NDIAGIEP------GAFDS 201
Query: 281 ANSSQLRYMENFLSSY----FSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDI-LKGIIL 335
A L + + + + + + ++ ++ I L
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261
Query: 336 SSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-------- 387
+ F + GLQ L L + +L +PS L L+ L+ L LS N+
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 388 ---LTFLEFFNATHNNLTGPIP 406
L + N +
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELG 342
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 46/299 (15%), Positives = 78/299 (26%), Gaps = 63/299 (21%)
Query: 131 RHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190
+ Y L EIP + +S L+ S N L
Sbjct: 15 KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPT------------------------ 47
Query: 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLE 250
TF +L +DL+ + + + L+ L N + L
Sbjct: 48 -IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106
Query: 251 LNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDY 310
L L IQ + + N L + +L S N
Sbjct: 107 LKHLFFIQ---TGISSIDFIPLH--------NQKTLESL--YLGS------------NHI 141
Query: 311 SITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLA-SNNLQGHIP 369
S +G LK + +N +++L+ L L + N I
Sbjct: 142 SSIKLPKGFPTEK------LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 370 SCLGSLTNLESLDLSKNRLT---FLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
+SL+ + F N+T +L + + F G +
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 50/226 (22%), Positives = 79/226 (34%), Gaps = 38/226 (16%)
Query: 7 SELTRLTILLFY-----LMTSDSPF--LDRLQRLS----DFSGQIPPSLGNLNQLQWLDL 55
E +L +L + + SPF L L+ L+ L LQ L+L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 56 AFNNF---LRELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSK 108
N+F + S+ +L LE L + I + S+K ++++LS
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILV------LSFCDLSSIDQHAF-TSLKMMNHVDLSH 509
Query: 109 NYFPRFDQHPTVLPWTTLSTKIRHYL-ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGE 167
N T LS YL ++ N+++ +PS + LS ++L N
Sbjct: 510 NRL-------TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNP---- 558
Query: 168 LLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLL 213
L C + L + T N LR V LS L
Sbjct: 559 -LDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 82/430 (19%), Positives = 139/430 (32%), Gaps = 49/430 (11%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLS--SLERLD---TFPPMKIHGNIPKWL 93
+ PS G LN L+ +D + N + L +L ++ + K +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 94 LNPSMKNFSYLNLSKNYFPR-----FDQHPTVLPWTTL--STKIRHYLISKNNLTGEIPS 146
L++S N + F + +L + I +N+ +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 147 WICNL--SSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS 201
L SS+ LDLS + + + L + L VL+L + F
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD----LKVLNLAYNKINKIADEAFYGLD 314
Query: 202 DLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----I 257
+L++++LS+NLL + + DL+ N I L +L L L +
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 258 QQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITM--- 314
+ F+ +P + + + + + + YF + +
Sbjct: 375 TTI-HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 315 -SNEGQMMTHDKIPDILKGI---ILSSNRFDGEMPTSI-----ANLKGLQVLGLASNNLQ 365
N + D+ P + L N T + L LQVL L N L
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 366 GHIPSCLGSLTNLESLDLSKNRLTF---------LEFFNATHNNLTGPIPQANQFPTFGY 416
P LT L L L+ NRLT LE + + N L P P F +
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV--FVSLSV 551
Query: 417 SSFNGNSRLC 426
N +C
Sbjct: 552 LDITHNKFIC 561
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 2e-20
Identities = 73/426 (17%), Positives = 130/426 (30%), Gaps = 59/426 (13%)
Query: 31 QRLSDFSG----QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIH 86
R++ + Q+P LN + L L+FN +S L L+ L+ +
Sbjct: 6 GRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE------LG 56
Query: 87 GNIPKWLLNP----SMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNL 140
++ ++ N L+L + L + + L
Sbjct: 57 SQYTPLTIDKEAFRNLPNLRILDLGSSKI-------YFLHPDAFQGLFHLFELRLYFCGL 109
Query: 141 TGEI--PSWICNLSSLYVLDLSDNNLSGELLQCLGNFSG--GLSVLSLQGKNFFGTTPDT 196
+ + + NL +L LDLS N + L +F L + F
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167
Query: 197 FMN--GSDLRMVDLSHNLLQGKIPKSLANCA------VLEISDLRNNQINDTFPIWLGSL 248
G L L+ N L ++ C VLEI D+ N +
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227
Query: 249 L-ELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQ 307
+ + LI + + FA ++ LS F F +
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287
Query: 308 NDYSITMSNEGQMMTHDKIPDI----------LKGIILSSNRFDGEMPTSIANLKGLQVL 357
+ + N + ++KI I L+ + LS N ++ L + +
Sbjct: 288 TLKDLKVLN----LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 358 GLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYS 417
L N++ L L++LDL N LT + F ++ N+ T
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI----PSIPDIFLSGNKLVTLPKI 399
Query: 418 SFNGNS 423
+ N
Sbjct: 400 NLTANL 405
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 66/405 (16%), Positives = 110/405 (27%), Gaps = 65/405 (16%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN 95
P S L L+ L IG L +L++L+ + N
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN------VAHNFIHSCKL 145
Query: 96 P----SMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNL 151
P ++ N +++LS NY L + + ++ L N I
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTIT--VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203
Query: 152 SSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTT------PDTFMNGSDLRM 205
L+ L L N S +++ GL V L F P D+ +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263
Query: 206 --VDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPI-WLGSLLELNILVL-IQQLP 261
L++ A + L I + L+I+ ++Q P
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP 323
Query: 262 CFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYR-----YFPQNDYSIT 313
+ L+ + N S F +N S +
Sbjct: 324 ------------------TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS 365
Query: 314 MSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP-SCL 372
+ + L+ + LS N M + L+ LQ L + L+ S
Sbjct: 366 GCCSYSDLGTNS----LRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 373 GSLTNLESLDLSKNRLTF-----------LEFFNATHNNLTGPIP 406
SL L LD+S L N+
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-23
Identities = 70/399 (17%), Positives = 121/399 (30%), Gaps = 52/399 (13%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN-----IP 90
S N ++LQWLDL+ + L L L + GN P
Sbjct: 44 LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI------LTGNPIQSFSP 97
Query: 91 KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTG-EIPSW 147
+ + L + L + ++ ++ N + ++P++
Sbjct: 98 GSFSG--LTSLENLVAVETKL-------ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Query: 148 ICNLSSLYVLDLSDNNLSG---ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204
NL++L +DLS N + LQ L L + N D G L
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGIKLH 207
Query: 205 MVDLSHNLLQGKIPK-SLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263
+ L N I K L N A L + L + D + + E +I+ + +
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL---EIFEPSIMEGLCDVTID 264
Query: 264 MGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQM 320
+L + +KF + + M + + + + +
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII---RCQLKQ 321
Query: 321 MTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ--GHIPSCLGSLTNL 378
+P LK + L+ N+ L L L L+ N L G +L
Sbjct: 322 FPTLDLPF-LKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378
Query: 379 ESLDLSKNRLTF----------LEFFNATHNNLTGPIPQ 407
LDLS N L+ + H+ L
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 7e-21
Identities = 68/437 (15%), Positives = 129/437 (29%), Gaps = 91/437 (20%)
Query: 37 SGQIPPSLGNLNQLQWLDLAFN---------------------------NFLRELPASIG 69
S ++P NL L +DL++N N + +
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201
Query: 70 SLSSLERLDTFPPMKIHGNIPKWLLNP-SMKNFSYLNLSKNYFPRFDQHP--TVLPWTTL 126
L L + GN + ++N + L++ + F + + +
Sbjct: 202 QGIKLHELT------LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255
Query: 127 ----STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182
I + ++ N + L+++ + L+ ++ L
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSL 312
Query: 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP 242
S+ ++ L+ + L+ N +G I L DL N ++ +
Sbjct: 313 SIIRCQL---KQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGC 367
Query: 243 IWLGSLLELNILVL------IQQLPCFMGKLPS---------KYFQCWNAMKFANSSQLR 287
L ++ L + L + F + +L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 288 YM---ENFLSSYFSFDFYR-------YFPQNDY-SITMSNEGQMMTHDKIPDILKGIILS 336
Y+ F F N + T+SN T+ L + LS
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN------LTFLDLS 481
Query: 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF------ 390
+ + L LQ+L ++ NNL S L +L +LD S NR+
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
Query: 391 -----LEFFNATHNNLT 402
L FFN T+N++
Sbjct: 542 HFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-20
Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 20/259 (7%)
Query: 6 CSELTRLTILLFYLMTSDSPFLDRLQRL--SDFSGQIPPSLGNLNQLQWLDLAFN--NFL 61
+ L+I+ L + L L+ L + G I L L +LDL+ N +F
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS 365
Query: 62 RELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117
S +SL LD + N + + ++ +L+ + +
Sbjct: 366 GCCSYSDLGTNSLRHLD------LSFNGAIIMSANFMG--LEELQHLDFQHS---TLKRV 414
Query: 118 PTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSG 177
+ +L K+ + IS N + L+SL L ++ N+ L + +
Sbjct: 415 TEFSAFLSL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473
Query: 178 GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237
L+ L L + F L+++++SHN L L D N+I
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 238 NDTFPIWLGSLLELNILVL 256
+ I L L
Sbjct: 534 ETSKGILQHFPKSLAFFNL 552
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 47/282 (16%), Positives = 87/282 (30%), Gaps = 21/282 (7%)
Query: 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG---ELLQCLGNFSGGLSVL 182
+ + ++ +S N L N S L LDLS + + L + LS L
Sbjct: 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH----LSNL 85
Query: 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND-TF 241
L G +P +F + L + L + L+ ++ +N I+
Sbjct: 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145
Query: 242 PIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDF 301
P + +L L + L ++ + Q N S L N + F
Sbjct: 146 PAYFSNLTNLVHVDLSY---NYIQTITVNDLQFLRENPQVNLS-LDMSLNPIDFIQDQAF 201
Query: 302 YR------YFPQNDYSIT-MSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGL 354
N S M Q + + ++ G + P+ + L +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 355 QV--LGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFF 394
+ L N L N+ ++ L+ + +LE
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 45/276 (16%), Positives = 82/276 (29%), Gaps = 27/276 (9%)
Query: 142 GEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS 201
G + I + ++ D LS ++ + + + L +F N S
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFSNFS 56
Query: 202 DLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLP 261
+L+ +DLS ++ K+ L L N I P L L LV ++
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE--- 113
Query: 262 CFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQ------NDYSI 312
+ L S L+ + NF+ S ++ + I
Sbjct: 114 TKLASLESFPIG--------QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Query: 313 TMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS-C 371
+ + P + + +S N D + +K L L L N +I C
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTC 224
Query: 372 LGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQ 407
L +L L L ++ +
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 25/150 (16%)
Query: 27 LDRLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFP 81
L++L L + L L L +A N+F +++ + ++L LD
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD--- 479
Query: 82 PMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLI 135
+ I + ++ LN+S N L + + +
Sbjct: 480 ---LSKCQLEQISWGVF-DTLHRLQLLNMSHNNL-------LFLDSSHYNQLYSLSTLDC 528
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLS 165
S N + SL +L++N+++
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
IP K I LS N S +N LQ L L+ ++ L +L +L L+
Sbjct: 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89
Query: 386 NRLTF-----------LEFFNATHNNLTGPIPQA 408
N + LE A L
Sbjct: 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 5e-20
Identities = 48/365 (13%), Positives = 125/365 (34%), Gaps = 38/365 (10%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN--- 95
IP L ++ LDL+FN + + ++L+ L + + +
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLI------LKSSRINTIEGDAF 70
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTG-EIPSWICNLS 152
S+ + +L+LS N+ + L + + +++ + N + S NL+
Sbjct: 71 YSLGSLEHLDLSDNHL-------SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123
Query: 153 SLYVLDLSDNNLSGELLQCLGNFSG--GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210
+L L + + E+ + +F+G L+ L ++ + + + D+ + L
Sbjct: 124 NLQTLRIGNVETFSEIRR--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 211 NLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270
+ + + + +LR+ + L + +++L L +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLA---RFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 271 YFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDIL 330
F + + + + F ++ + +
Sbjct: 239 SFNELLKLLRYILE----LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT------I 288
Query: 331 KGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF 390
+ + + ++ T + L+ ++ + + ++ + S L +LE LDLS+N +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 391 LEFFN 395
N
Sbjct: 349 EYLKN 353
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 63/403 (15%), Positives = 133/403 (33%), Gaps = 61/403 (15%)
Query: 39 QIPP-SLGNLNQLQWLDLAFNNFLRELPAS-IGSLSSLERLDTFPPMKIHGN----IPKW 92
I + +L L+ LDL+ +N L L +S G LSSL+ L+ + GN +
Sbjct: 64 TIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKYLN------LMGNPYQTLGVT 116
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICN 150
L P++ N L + + + + + T + I +L + +
Sbjct: 117 SLFPNLTNLQTLRIGNV------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170
Query: 151 LSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210
+ ++ L L + + LL+ + + L L+ N +
Sbjct: 171 IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 211 NLLQG----------KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL--IQ 258
K+ + + + +E D N + D P + EL + I+
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289
Query: 259 QLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDY----- 310
+L +P Y + ++ +++ + + + ++ ++
Sbjct: 290 RL-----HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-QHLKSLEFLDLSE 343
Query: 311 -SITMSNEGQMMTHDKIPDILKGIILSSNRFD--GEMPTSIANLKGLQVLGLASNNLQGH 367
+ P L+ ++LS N + + LK L L ++ N
Sbjct: 344 NLMVEEYLKNSACKGAWPS-LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P 401
Query: 368 IPSCLGSLTNLESLDLSKNRLTF--------LEFFNATHNNLT 402
+P + L+LS + LE + ++NNL
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 58/404 (14%), Positives = 112/404 (27%), Gaps = 64/404 (15%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF--PPMKIHGNIPKWLLNPSM 98
L L L++ + S+ S+ + L + L +
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
NL++ F P L+ + N ++ +I LS + D
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Query: 159 LSDNNLSGELLQCLGNFSGG-------LSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHN 211
+ N L S + L + F + ++ + + ++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
Query: 212 LLQGKIPKSLANCAVLEISDLRNNQINDTF---PIWLGSLLELNILVL----IQQLPCFM 264
+ + LE DL N + + + G+ L LVL ++ +
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK-- 378
Query: 265 GKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMM 321
L + N P+
Sbjct: 379 -----------TGEILLTLKNLTSLDISRNTFHP-MPDSCQW--PEK------------- 411
Query: 322 THDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESL 381
++ + LSS + T I + L+VL +++NNL L L+ L
Sbjct: 412 --------MRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSL---FLPRLQEL 456
Query: 382 DLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
+S+N+L L + L NQ + F+ + L
Sbjct: 457 YISRNKLKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 41/286 (14%), Positives = 85/286 (29%), Gaps = 50/286 (17%)
Query: 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208
+ + V D + + + + L L ++L+++ L
Sbjct: 2 LSCDASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57
Query: 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFM 264
+ + + + LE DL +N ++ W G L L L L Q L
Sbjct: 58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG--- 114
Query: 265 GKLPSKYFQCWNAMKFANSSQLRYM----ENFLSSYFSFDFYRYFPQNDYSITMSNEGQM 320
F N + L+ + S DF
Sbjct: 115 -----------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF-----------------AG 146
Query: 321 MTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLES 380
+T L + + + S+ +++ + L L + + L+++
Sbjct: 147 LTS------LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 381 LDLSKNRLTFLEFFNATHNNLTGPIPQ-ANQFPTFGYSSFNGNSRL 425
L+L L +F + ++ P+ + A + SFN +L
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 28/223 (12%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGS-LSSLERLDTFPPMKIHGNIPKWLLNPSMK 99
L +++ + + N+ + +P S L SLE LD + N+ +
Sbjct: 303 STVYSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLD------LSENLMVEEYLKNSA 355
Query: 100 NFS------YLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSS 153
L LS+N+ + +L + IS+N +P
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEIL---LTLKNLTSLDISRNTFH-PMPDSCQWPEK 411
Query: 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLL 213
+ L+LS + + C+ L VL + N + + L+ + +S N L
Sbjct: 412 MRFLNLSSTGIR-VVKTCIPQ---TLEVLDVSN-NNLDSFS---LFLPRLQELYISRNKL 463
Query: 214 QGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
+ +P + + VL + + NQ+ L L + L
Sbjct: 464 K-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 49/294 (16%), Positives = 80/294 (27%), Gaps = 41/294 (13%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
+ T IPS + +++ LDLS N ++ L + L VL L+ D
Sbjct: 13 RSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACAN-LQVLILKSSRINTIEGD 68
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND-TFPIWLGSLLELNIL 254
F + L +DLS N L + L+ +L N +L L L
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 255 VLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQNDYS 311
+ ++ F + L +E L +Y S
Sbjct: 129 RIGNV--ETFSEIRRIDFA--------GLTSLNELEIKALSLRNYQSQSL---------- 168
Query: 312 ITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSC 371
I D + + L + + L ++ L L NL S
Sbjct: 169 ------------KSIRD-IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215
Query: 372 LGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
L + R + L + F + NG
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 24/149 (16%)
Query: 29 RLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN 88
L+ + L L L LD++ N +P S + L+ +
Sbjct: 372 HLRSMQKTGE----ILLTLKNLTSLDIS-RNTFHPMPDSCQWPEKMRFLN------LSST 420
Query: 89 IPKWLLNPSMKNFSYLNLSKNYFPRFDQHP-------------TVLPWTTLSTKIRHYLI 135
+ + + L++S N F LP +L + I
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKI 480
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNL 164
S+N L L+SL + L N
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 46/231 (19%)
Query: 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMK 99
+P S+ +LN+L+ L + L ELP + S + +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ------------------GLV 183
Query: 100 NFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVL 157
N L L LP +++ ++ I + L+ + I +L L L
Sbjct: 184 NLQSLRLEWTGI-------RSLP-ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234
Query: 158 DLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI 217
DL G + L L L+ + T P + L +DL + ++
Sbjct: 235 DLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 218 PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLP 268
P +A I + + L Q P P
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQ----------------LDQHRPVARPAEP 328
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 39/265 (14%), Positives = 75/265 (28%), Gaps = 45/265 (16%)
Query: 38 GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHG---------- 87
G + + + L + LR + D
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61
Query: 88 --------NIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS-TKIRHYLISKN 138
L + + L L P + ++H I
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPL-------PQFPDQAFRLSHLQHMTIDAA 114
Query: 139 NLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198
L E+P + + L L L+ N L L + + + L LS++ P+
Sbjct: 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-RLRELSIRACPELTELPEPLA 171
Query: 199 NGSD---------LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLL 249
+ L+ + L ++ +P S+AN L+ +RN+ ++ + L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229
Query: 250 ELNILVL-----IQQLPCFMGKLPS 269
+L L L ++ P G
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAP 254
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 41/283 (14%), Positives = 81/283 (28%), Gaps = 55/283 (19%)
Query: 133 YLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192
Y L + Y D + + + S + + G+
Sbjct: 18 YFQGSTALR-PYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRAL-KA 70
Query: 193 TPDTFMNGSD--LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLE 250
T D + + ++L L + P + L+ + + P +
Sbjct: 71 TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG 128
Query: 251 LNILVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFP 306
L L L ++ LP + L ++LR + + + P
Sbjct: 129 LETLTLARNPLRALPASIASL----------------NRLREL--SIRACPEL---TELP 167
Query: 307 QNDYSITMSNEGQMMTH-----------DKIPDI------LKGIILSSNRFDGEMPTSIA 349
+ S S E Q + + +P LK + + ++ + +I
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH 226
Query: 350 NLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS-KNRLTFL 391
+L L+ L L + P G L+ L L + L L
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 33/134 (24%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSM 98
+ P++ +L +L+ LDL LR P G + L+RL + +P + +
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHR--L 276
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
L+L NL+ +PS I L + ++
Sbjct: 277 TQLEKLDLRGC----------------------------VNLS-RLPSLIAQLPANCIIL 307
Query: 159 LSDNNLSGELLQCL 172
+ +L +L Q
Sbjct: 308 VP-PHLQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 48/269 (17%), Positives = 82/269 (30%), Gaps = 42/269 (15%)
Query: 143 EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNF-SGGLSVLSLQGKNFFGTTPDTFMNGS 201
N ++ + + L L + G L L+ PD S
Sbjct: 47 HSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRS-VPLPQFPDQAFRLS 104
Query: 202 DLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL--IQQ 259
L+ + + L ++P ++ A LE L N + P + SL L L + +
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162
Query: 260 LPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319
L +LP + + L+ + + R P SI
Sbjct: 163 L----TELPEPLASTDASGEHQGLVNLQSL------RLEWTGIRSLPA---SI-----AN 204
Query: 320 M-------MTHDKI----PDI-----LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363
+ + + + P I L+ + L P L+ L L +
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 364 LQGHIPSCLGSLTNLESLDLSKN-RLTFL 391
+P + LT LE LDL L+ L
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFL 391
+P I L L+ L L +PS + L + + + L
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 9e-18
Identities = 50/387 (12%), Positives = 108/387 (27%), Gaps = 40/387 (10%)
Query: 27 LDRLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
+R + + + ++ LDL+ N + A + + LE L+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN---- 64
Query: 83 MKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHP------------TVLPWTTL 126
+ N +++ L+L+ NY P + + +
Sbjct: 65 --LSSNVLYETLDLESLSTLR---TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119
Query: 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG 186
++ ++ N +T S + LDL N + L S L L+LQ
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 187 KNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLG 246
+ + L+ +DLS N L + + A + LRNN++ L
Sbjct: 179 NFIYDVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 247 SLLELNILVLIQ-QLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYF 305
L L C +F ++ ++ + + ++
Sbjct: 235 FSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365
+ + K + + + + + N + + +
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKE-HALLSGQGSETE-RLECERENQARQREIDALKEQYR 349
Query: 366 GHIPSCLGSLTNLESLDLSKNRLTFLE 392
I +L+ K L
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQV 376
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 7e-17
Identities = 49/377 (12%), Positives = 108/377 (28%), Gaps = 36/377 (9%)
Query: 42 PSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101
L +L+ L+ LDL N + S+E L N + +
Sbjct: 74 LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLH------AANNNISRVSCSRGQGK 122
Query: 102 SYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTG-EIPSWICNLSSLYVLD 158
+ L+ N T+L +++++ + N + + +L L+
Sbjct: 123 KNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 159 LSDNNLSG-ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI 217
L N + + L L L N F + + + + L +N L I
Sbjct: 176 LQYNFIYDVKGQVVFAK----LKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLV-LI 229
Query: 218 PKSLANCAVLEISDLRNNQIN-DTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWN 276
K+L LE DLR N + T + + + Q + KL + +
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVK----KLTGQNEEECT 284
Query: 277 AMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDI-LKGIIL 335
+ E+ + + ++ +E + + ++ + I
Sbjct: 285 VPTLGHYGAY-CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 336 SSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFN 395
++ + + L L + + + L+ L+
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT 403
Query: 396 ATHNNLTGPIPQANQFP 412
+ L ++
Sbjct: 404 EEQSPLQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 54/283 (19%), Positives = 91/283 (32%), Gaps = 49/283 (17%)
Query: 135 ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP 194
++ ++L + S + ++ LDLS N LS L F+ L +L+L
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVL--YET 73
Query: 195 DTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNIL 254
+ S LR +DL++N +Q L +E NN I+ + +
Sbjct: 74 LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRGQGKKNI 125
Query: 255 VL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQ 307
L I L S+++Y+ N + + +
Sbjct: 126 YLANNKITMLRDLD---------------EGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 308 ------NDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLAS 361
I + LK + LSSN+ M + G+ + L +
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAK------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223
Query: 362 NNLQGHIPSCLGSLTNLESLDLSKNRLTF--LEFFNATHNNLT 402
N L I L NLE DL N L F + + +
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 32/207 (15%)
Query: 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
+ NG+ ++ ++ + L+ + + ++ DL N ++ L +L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 254 LVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFP 306
L L + + + S LR + N++
Sbjct: 63 LNLSSNVLYETL-----------------DLESLSTLRTLDLNNNYVQELLVGPSIETLH 105
Query: 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366
+ +I+ + + K I L++N+ +Q L L N +
Sbjct: 106 AANNNISRVSCSRGQG-------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 367 -HIPSCLGSLTNLESLDLSKNRLTFLE 392
+ S LE L+L N + ++
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVK 185
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 47/412 (11%), Positives = 103/412 (25%), Gaps = 95/412 (23%)
Query: 27 LDRLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
++ L S L +L+ L+L+ +N L E + SLS+L LD
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD-LESLSTLRTLD---- 86
Query: 83 MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTG 142
++ N + L + L+ + N + + + ++ ++ N +T
Sbjct: 87 --LNNNYVQEL--LVGPSIETLHAANNNI-------SRVSCSRG-QGKKNIYLANNKITM 134
Query: 143 EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202
S + LDL N + ++ ++
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEID-----------------TVNFAELAASSDT------- 170
Query: 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQ 258
L ++L +N + + A L+ DL +N++ S + + L +
Sbjct: 171 LEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 259 QLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEG 318
+ S L + + L N + +
Sbjct: 228 LIEK----------------ALRFSQNLEHFD--LRG------------NGFHCGTLRDF 257
Query: 319 QMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNL 378
+ ++ + + + + L L
Sbjct: 258 -------FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310
Query: 379 ES-----LDLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
+ L + LE Q+ T
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAK 362
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
K ++ + + + + ++ L L+ N L + L T LE L+LS N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 390 FLEFF---------NATHNNLT 402
+ +N +
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQ 93
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 26/105 (24%)
Query: 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209
N + + ++D++L + +++ +DLS
Sbjct: 8 NGNRYKIEKVTDSSLK-----------------QAL--------ASLRQSAWNVKELDLS 42
Query: 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW-LGSLLELNI 253
N L LA LE+ +L +N + +T + L +L L++
Sbjct: 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL 87
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-17
Identities = 75/354 (21%), Positives = 123/354 (34%), Gaps = 67/354 (18%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSM 98
+P +L + L + N+ L ELP SL SL + + L+
Sbjct: 85 SLPELPPHL---ESLVASCNS-LTELPELPQSLKSLLVDN------NNLKA----LSDLP 130
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
YL +S N LP S+ ++ + N+L ++P +L +
Sbjct: 131 PLLEYLGVSNNQL-------EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---A 179
Query: 159 LSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP 218
+N L E L L N L+ + N PD ++ L + +N+L +
Sbjct: 180 AGNNQL--EELPELQNLPF-LTAIYADN-NSLKKLPDLPLS---LESIVAGNNIL--EEL 230
Query: 219 KSLANCAVLEISDLRNNQINDTFPIWLGSLLELNIL-VLIQQLPCFMGKLPSKYFQCWNA 277
L N L NN + T P SL LN+ + LP L
Sbjct: 231 PELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTF-------- 281
Query: 278 MKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSS 337
L EN S P N Y + S+ ++ + +P L+ + +S+
Sbjct: 282 --------LDVSENIFSGLSEL------PPNLYYLNASS-NEIRSLCDLPPSLEELNVSN 326
Query: 338 NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFL 391
N+ E+P L + L + N+L +P NL+ L + N L
Sbjct: 327 NKLI-ELPALPPRL---ERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF 372
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 4e-17
Identities = 71/388 (18%), Positives = 126/388 (32%), Gaps = 86/388 (22%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSM 98
++P N+ A++ + R P G + L +
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR--------------LRDCLD 70
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
+ L L+ + LP L + + S N+LT E+P +L SL V +
Sbjct: 71 RQAHELELNNLGL-------SSLP--ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDN 120
Query: 159 LSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP 218
+ LS + L L + N P+ N S L+++D+ +N L+ K+P
Sbjct: 121 NNLKALS--------DLPPLLEYLGVSN-NQLEKLPE-LQNSSFLKIIDVDNNSLK-KLP 169
Query: 219 KSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQC 274
+ LE NNQ+ + + +L L + +++LP L
Sbjct: 170 DLPPS---LEFIAAGNNQLEELPEL--QNLPFLTAIYADNNSLKKLPDLPLSL------- 217
Query: 275 WNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGII 334
+ N L +I N + T +P L+ +
Sbjct: 218 ---------ESIVAGNNILEELPELQ----NLPFLTTIYADN-NLLKTLPDLPPSLEALN 263
Query: 335 LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS-------------CLGSLTNLESL 381
+ N ++P +L L V + L P+ +LE L
Sbjct: 264 VRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322
Query: 382 DLSKNRLTF-------LEFFNATHNNLT 402
++S N+L LE A+ N+L
Sbjct: 323 NVSNNKLIELPALPPRLERLIASFNHLA 350
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 75/423 (17%), Positives = 143/423 (33%), Gaps = 111/423 (26%)
Query: 5 LCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIP--PSLGNLNQLQWLDLAFNNFLR 62
L L L + L + S L+ L + Q+ P L N + L+ +D+ NN L+
Sbjct: 109 LPQSLKSLLVDNNNL-KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV-DNNSLK 166
Query: 63 ELPASIGSLSSLE----RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118
+LP SL + +L+ P + ++ + + N + P
Sbjct: 167 KLPDLPPSLEFIAAGNNQLEELPEL------------QNLPFLTAIYADNNSLKKLPDLP 214
Query: 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGG 178
L +++ NN+ E+P + NL L + +N L L +
Sbjct: 215 LSL----------ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-----TLPDLPPS 258
Query: 179 LSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238
L L+++ N+ P+ + L +D+S N+ + + N L + +N+I
Sbjct: 259 LEALNVRD-NYLTDLPELPQS---LTFLDVSENIFS-GLSELPPNLYYL---NASSNEIR 310
Query: 239 DTFPIWLGSLLELNILV-LIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYF 297
+ SL ELN+ + +LP +L +L N L+
Sbjct: 311 -SLCDLPPSLEELNVSNNKLIELPALPPRL----------------ERLIASFNHLAE-- 351
Query: 298 SFDFYRYFPQNDYSITMSNEGQMMTHDKIPDI---LKGIILSSNRFDGEMPTSIANLKGL 354
+P++ LK + + N E P +++ L
Sbjct: 352 ----------------------------VPELPQNLKQLHVEYNPLR-EFPDIPESVEDL 382
Query: 355 QVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF-------LEFFNATHNNLTGPIPQ 407
++ N+ +P NL+ L + N L +E + P
Sbjct: 383 RM-----NSHLAEVPE---LPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEF 434
Query: 408 ANQ 410
A++
Sbjct: 435 AHE 437
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 48/282 (17%), Positives = 89/282 (31%), Gaps = 58/282 (20%)
Query: 7 SELTRLTILLFY--LMTSDSPFLDRLQRLSDFSGQI--PPSLGNLNQLQWLDLAFNNFLR 62
L LT + + L+ + + + P L NL L + NN L+
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD-NNLLK 250
Query: 63 ELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122
LP SL +L D + L ++ ++L++S+N F + P L
Sbjct: 251 TLPDLPPSLEALNVRD----NYLTD------LPELPQSLTFLDVSENIFSGLSELPPNLY 300
Query: 123 WTTLS-----------TKIRHYLISKNNLTGEIPSWICNLSSLYV--------------- 156
+ S + +S N L E+P+ L L
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNL 359
Query: 157 --LDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
L + N L E + L+ + P+ N L+ + + N L+
Sbjct: 360 KQLHVEYNPLR-EFPDIPESVE------DLRMNSHLAEVPELPQN---LKQLHVETNPLR 409
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
+ P + L + + ++ D + + +L V
Sbjct: 410 -EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVF 447
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 46/284 (16%), Positives = 81/284 (28%), Gaps = 83/284 (29%)
Query: 134 LISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTT 193
L +NLT E+P N+ S + + G ++V L
Sbjct: 17 LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE-MAVSRL--------- 65
Query: 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
D ++L++ L +P+ + L N + P SL L +
Sbjct: 66 RDCLDRQ--AHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLV 118
Query: 254 LVL-IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSI 312
++ L L L N L
Sbjct: 119 DNNNLKALSDLPPLL----------------EYLGVSNNQLEK----------------- 145
Query: 313 TMSNEGQMMTHDKIPDI-----LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367
+P++ LK I + +N ++P +L + + +N L+
Sbjct: 146 -------------LPELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE-E 187
Query: 368 IPSCLGSLTNLESLDLSKNRLTF-------LEFFNATHNNLTGP 404
+P L +L L ++ N L LE A +N L
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 230
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
L+ + S+ EMP N+K A + + + P G + L
Sbjct: 13 LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71
Query: 390 FLEFFNATHNNLT 402
+ L+
Sbjct: 72 QAHELELNNLGLS 84
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 69/378 (18%), Positives = 123/378 (32%), Gaps = 39/378 (10%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPS- 97
+IP +L + LDL+FN S S L+ LD + + + + +
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLD------LSRCEIQTIEDGAY 72
Query: 98 --MKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSS 153
+ + S L L+ N L S + ++ + + NL I +L +
Sbjct: 73 QSLSHLSTLILTGNPI-------QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 154 LYVLDLSDNNLS----GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV--- 206
L L+++ N + E L N L L L + ++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTN----LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 207 -DLSHNLLQGKIPKSLANCAVLEISDLRNNQIN-DTFPIWLGSLLELNILVLIQQLPCFM 264
DLS N + I L LRNN + + + L L + L+
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 265 GKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD 324
G L + + R D + +S + +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 325 KIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS 384
+ + L + +F + +LK L ++N G+ S + L +LE LDLS
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF----TSNKGGNAFSEVD-LPSLEFLDLS 355
Query: 385 KNRLTFLEFFNATHNNLT 402
+N L+F + + T
Sbjct: 356 RNGLSFKGCCSQSDFGTT 373
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 57/374 (15%), Positives = 108/374 (28%), Gaps = 33/374 (8%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNP 96
+ L+ LQ L N IG L +L+ L+ + N
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN------VAHNLIQSFKLPEYFS 146
Query: 97 SMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYV 156
++ N +L+LS N + + +S N + I L+
Sbjct: 147 NLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHK 204
Query: 157 LDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT------TPDTFMNGSDLRMVDLSH 210
L L +N S +++ GL V L F +L + +
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 211 NLLQG---KIPKSLANCAVLEISDLRNNQINDTFPI-WLGSLLELNILVL-IQQLPC-FM 264
L I + L + I + L ++ Q P +
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324
Query: 265 GKLPSKYFQC---WNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEG 318
L F NA + L ++ N LS + + + +S G
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 319 QMMTHDKIPDI--LKGIILSSNRFDGEMPTSI-ANLKGLQVLGLASNNLQGHIPSCLGSL 375
+ + L+ + + S+ +L+ L L ++ + + L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 376 TNLESLDLSKNRLT 389
++LE L ++ N
Sbjct: 445 SSLEVLKMAGNSFQ 458
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 68/380 (17%), Positives = 113/380 (29%), Gaps = 57/380 (15%)
Query: 37 SGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN----IPKW 92
S ++P NL L+ LDL+ N + L + L+ + + N I
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL--SLDLSLNPMNFIQPG 195
Query: 93 LLNPSMKNFSYLNLSKNYF--PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICN 150
L L N+ L + + ++ NL S +
Sbjct: 196 AFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 151 LSSLYVLDLSDNNLSGELLQCLGNFSG--GLSVLSLQGKNFFGTTPDTFMNG-SDLRMVD 207
L +L + + L L + F+ +S SL ++ G L +V+
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP-IWLGSLLELNI----LVLIQQLPC 262
KSL +N+ + F + L SL L++ L
Sbjct: 314 CKFGQFPTLKLKSLKRL------TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 263 FMGKLPS-KYFQC-WNAMK-----FANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSI 312
S KY +N + F QL ++ + L F +
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----- 422
Query: 313 TMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS-C 371
L + +S L L+VL +A N+ Q +
Sbjct: 423 -----------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 372 LGSLTNLESLDLSKNRLTFL 391
L NL LDLS+ +L L
Sbjct: 466 FTELRNLTFLDLSQCQLEQL 485
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 8e-15
Identities = 56/377 (14%), Positives = 108/377 (28%), Gaps = 64/377 (16%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPA-SIGSLSSLERLDTFPPMKIHGNIPKWLLNPS 97
I P +L L L N + I L+ LE + + +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 98 MKNFSYLNLSKNYFPRFDQHPTVLPWT-TLSTKIRHYLISKNNLTGEIP-SWICNLSSLY 155
++ L + + D + + T + + + + S+ L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 156 VLDLSDN-------------NLSGELLQCLGNFSG--GLSVLSLQG--KNFFGTTPDTFM 198
+++ + + L L L +F G +
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 199 NGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW----LGSLLELNIL 254
+ L+ +DLS N + + + LE D +++ + L +L+ L+
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-- 427
Query: 255 VLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYS 311
+ + + F S L + N F D +
Sbjct: 428 ------------ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---- 471
Query: 312 ITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSC 371
L + LS + + PT+ +L LQVL +ASN L+
Sbjct: 472 ------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 372 LGSLTNLESLDLSKNRL 388
LT+L+ + L N
Sbjct: 514 FDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 22/242 (9%)
Query: 6 CSELTRLTILLFYLMTSDSPFLDRLQRL--SDFSGQIPPSLGNLNQLQWLDLAFN--NFL 61
L ++ + L L+RL + G S +L L++LDL+ N +F
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 62 RELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117
S +SL+ LD + N + L ++ +L+ + + +
Sbjct: 363 GCCSQSDFGTTSLKYLD------LSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEF 414
Query: 118 PTVLPWTTLSTKIRHYL-ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176
L L YL IS + LSSL VL ++ N+ L +
Sbjct: 415 SVFLSLRNLI-----YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 177 GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQ 236
L+ L L +P F + S L++++++ N L+ L+ L N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Query: 237 IN 238
+
Sbjct: 530 WD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 44/290 (15%), Positives = 84/290 (28%), Gaps = 48/290 (16%)
Query: 148 ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207
+ + ++ + N + N L L +F + +L+++D
Sbjct: 4 VEVVPNITY-QCMELNFY----KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKL 267
LS +Q + + + L L N I L L LV ++ + L
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE---TNLASL 115
Query: 268 PSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIP 327
+ + L+ + + + + F +Y ++N
Sbjct: 116 ENFPIG--------HLKTLKEL------NVAHNLIQSFKLPEYFSNLTN----------- 150
Query: 328 DILKGIILSSNRFDGEMPTSIANLKGLQV----LGLASNNLQGHIPSCLGSLTNLESLDL 383
L+ + LSSN+ T + L + + L L+ N + I L L L
Sbjct: 151 --LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207
Query: 384 SKNRLTFLEFFNA--------THNNLTGPIPQANQFPTFGYSSFNGNSRL 425
N + H + G F S+ G L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 2e-17
Identities = 67/389 (17%), Positives = 118/389 (30%), Gaps = 88/389 (22%)
Query: 47 LNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNL 106
N L++ + L LP + + + L +
Sbjct: 39 NNGNAVLNVG-ESGLTTLPDCLP-----------------------------AHITTLVI 68
Query: 107 SKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG 166
N P L TL +S N LT +P L L + +L
Sbjct: 69 PDNNLTSLPALPPEL--RTLE-------VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA 118
Query: 167 ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAV 226
GL L + G N + P L+ + +S N L +P +
Sbjct: 119 LP--------SGLCKLWIFG-NQLTSLPVLPPG---LQELSVSDNQLA-SLPALPSELCK 165
Query: 227 LEISDLRNNQINDTFPIWLGSLLELNILV-LIQQLPCFMGKLPSKYFQCWNAMKFANSSQ 285
L NNQ+ + P+ L EL++ + LP +L +
Sbjct: 166 L---WAYNNQLT-SLPMLPSGLQELSVSDNQLASLPTLPSEL----------------YK 205
Query: 286 LRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMP 345
L N L+S + P + +S ++ + +P LK +++S NR +P
Sbjct: 206 LWAYNNRLTSLPAL------PSGLKELIVSG-NRLTSLPVLPSELKELMVSGNRLT-SLP 257
Query: 346 TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPI 405
+ L L + N L +P L L++ +++L N L+ +T
Sbjct: 258 MLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA--LREITSAP 311
Query: 406 PQANQFPTFGYSSFNGNSRLCGKPLPKEC 434
+ F + + L
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAAD 340
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 5e-16
Identities = 56/291 (19%), Positives = 83/291 (28%), Gaps = 70/291 (24%)
Query: 2 KRCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSG----QIPPSLGNLNQLQWLDLAF 57
+ CL + L + L T + L +P L + L+++
Sbjct: 35 RACLNNGNAVLNVGESGLTTLPDCLPAHITTL-VIPDNNLTSLPALPPEL---RTLEVS- 89
Query: 58 NNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117
N L LP L L L L + N
Sbjct: 90 GNQLTSLPVLPPGLLELSIFS------NPLT----HLPALPSGLCKLWIFGNQLTSLPVL 139
Query: 118 PTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYV-----------------LDLS 160
P L LS +S N L +P+ L L+ L +S
Sbjct: 140 PPGL--QELS-------VSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS 189
Query: 161 DNNLS------GEL--LQCLGN-------FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205
DN L+ EL L N GL L + G N + P S+L+
Sbjct: 190 DNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLTSLPVLP---SELKE 245
Query: 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
+ +S N L +P + L + NQ+ P L L + L
Sbjct: 246 LMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNL 291
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 54/263 (20%), Positives = 94/263 (35%), Gaps = 52/263 (19%)
Query: 148 ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207
C + VL++ ++ L+ L CL ++ L + N + P +LR ++
Sbjct: 36 ACLNNGNAVLNVGESGLT-TLPDCLPA---HITTLVIPD-NNLTSLPALP---PELRTLE 87
Query: 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL-IQQLPCFMGK 266
+S N L +P L I + P L +L I + LP
Sbjct: 88 VSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLWIFGNQLTSLPVLPPG 142
Query: 267 LPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKI 326
L +L +N L+S + P + N Q+ + +
Sbjct: 143 L----------------QELSVSDNQLASLPAL------PSELCKLWAYN-NQLTSLPML 179
Query: 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386
P L+ + +S N+ +PT + L L +N L +P+ + L+ L +S N
Sbjct: 180 PSGLQELSVSDNQL-ASLPTLPSELYKLWAY---NNRLT-SLPA---LPSGLKELIVSGN 231
Query: 387 RLTF-------LEFFNATHNNLT 402
RLT L+ + N LT
Sbjct: 232 RLTSLPVLPSELKELMVSGNRLT 254
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 53/257 (20%), Positives = 74/257 (28%), Gaps = 44/257 (17%)
Query: 5 LCSELTRLTILLFY--LMTSDSPFLDRLQRLSDFSG----QIPPSLGNLNQLQWLDLAFN 58
L + + L L Y +TS LQ L S +P L +L N
Sbjct: 156 LPALPSELCKLWAYNNQLTSLPMLPSGLQEL-SVSDNQLASLPTLPSELYKLWAY----N 210
Query: 59 NFLRELPASIGSLSSLE----RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRF 114
N L LPA L L RL + P L +S N
Sbjct: 211 NRLTSLPALPSGLKELIVSGNRLTSLPV--------------LPSELKELMVSGNRL--- 253
Query: 115 DQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGN 174
T LP L + + + +N LT +P + +LSS ++L N LS LQ
Sbjct: 254 ----TSLP--MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ---A 303
Query: 175 FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234
S G + + + L A
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH--MFGQ 361
Query: 235 NQINDTFPIWLGSLLEL 251
D F ++L L E
Sbjct: 362 EDNADAFSLFLDRLSET 378
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 80/394 (20%), Positives = 142/394 (36%), Gaps = 86/394 (21%)
Query: 27 LDRLQRLSDFSGQI--PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK 84
L R + + L + L +A + + I L++LE L+ +
Sbjct: 21 LAEGIRAVLQKASVTDVVTQEELESITKLVVAGEK-VASIQG-IEYLTNLEYLN-LNGNQ 77
Query: 85 IHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEI 144
I P L N + + L + N T + T +R ++++N++
Sbjct: 78 ITDISP--LSN--LVKLTNLYIGTNKI-------TDISALQNLTNLRELYLNEDNISDIS 126
Query: 145 PSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204
P + NL+ +Y L+L N+ L L N +G L+ L++ N +DL
Sbjct: 127 P--LANLTKMYSLNLGANHNLS-DLSPLSNMTG-LNYLTVTESKV--KDVTPIANLTDLY 180
Query: 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQL 260
+ L++N ++ P LA+ L NQI D P + ++ LN L + I L
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236
Query: 261 PCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNE 317
AN SQL ++ N +S + ++
Sbjct: 237 SPL-----------------ANLSQLTWLEIGTNQISDINAVK------------DLTK- 266
Query: 318 GQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377
LK + + SN+ + + NL L L L +N L +G LTN
Sbjct: 267 ------------LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312
Query: 378 LESLDLSKNRLTF---------LEFFNATHNNLT 402
L +L LS+N +T ++ + + +
Sbjct: 313 LTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 52/257 (20%), Positives = 99/257 (38%), Gaps = 30/257 (11%)
Query: 7 SELTRLTILLFY--LMTSDSPF--LDRLQRLSDFSGQI--PPSLGNLNQLQWLDLAFNNF 60
S L +LT L +T S L L+ L I L NL ++ L+L N+
Sbjct: 85 SNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANH- 143
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPS-MKNFSYLNLSKNYFPRFDQHPT 119
+ + +++ L L + + K + + + + L+L+ N
Sbjct: 144 NLSDLSPLSNMTGLNYLT------VTESKVKDVTPIANLTDLYSLSLNYNQI-------E 190
Query: 120 VLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179
+ T + ++ N +T P + N++ L L + +N ++ L L N S L
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQ-L 245
Query: 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239
+ L + + + + + L+M+++ N + L N + L L NNQ+ +
Sbjct: 246 TWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN 301
Query: 240 TFPIWLGSLLELNILVL 256
+G L L L L
Sbjct: 302 EDMEVIGGLTNLTTLFL 318
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 5e-11
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 30/239 (12%)
Query: 7 SELTRLTILLFY--LMTSDSPFLDRLQRLS--DFSG-QI--PPSLGNLNQLQWLDLAFNN 59
+ LT++ L SD L + L+ + ++ + NL L L L +N
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ 188
Query: 60 FLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN-PSMKNFSYLNLSKNYFPRFDQHP 118
+ ++ + SL+SL + N + +M + L + N
Sbjct: 189 -IEDISP-LASLTSLHYFT------AYVNQITDITPVANMTRLNSLKIGNNKITDLS--- 237
Query: 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGG 178
P L +++ I N ++ I + + +L+ L +L++ N +S + L N S
Sbjct: 238 ---PLANL-SQLTWLEIGTNQISD-INA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQ- 288
Query: 179 LSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237
L+ L L + ++L + LS N + P LA+ + ++ +D N I
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 25/213 (11%)
Query: 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN-PSMKNF 101
+L + L + ++ + L S+ +L + G + + N
Sbjct: 17 PDADLAEGIRAVLQ-KASVTDVV-TQEELESITKLV------VAGEKVASIQGIEYLTNL 68
Query: 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSD 161
YLNL+ N T + + K+ + I N +T S + NL++L L L++
Sbjct: 69 EYLNLNGNQI-------TDISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNE 119
Query: 162 NNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSL 221
+N+S + L N + + L+L G N + N + L + ++ + ++ P +
Sbjct: 120 DNISD--ISPLANLT-KMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--I 173
Query: 222 ANCAVLEISDLRNNQINDTFPIW-LGSLLELNI 253
AN L L NQI D P+ L SL
Sbjct: 174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTA 206
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 50/273 (18%), Positives = 88/273 (32%), Gaps = 47/273 (17%)
Query: 151 LSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210
++L L N + + + LQ + T T + + ++
Sbjct: 2 AATLATLPAPINQIFP-----DADLAE-GIRAVLQKASV--TDVVTQEELESITKLVVAG 53
Query: 211 NLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGK 266
+ + + LE +L NQI D P L +L++L L + I +
Sbjct: 54 EKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISAL-QN 108
Query: 267 LPS-KYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK 325
L + + ++ S L + S N +S M
Sbjct: 109 LTNLRELYLNE-DNISDISPLANLTKMYSLNLGA--------NHNLSDLSPLSNMTG--- 156
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
L + ++ ++ T IANL L L L N ++ P L SLT+L
Sbjct: 157 ----LNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208
Query: 386 NRLTFLEFF---------NATHNNLTGPIPQAN 409
N++T + +N +T P AN
Sbjct: 209 NQITDITPVANMTRLNSLKIGNNKITDLSPLAN 241
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-- 387
L + + +N+ + +ANL L L + +N + + + LT L+ L++ N+
Sbjct: 223 LNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278
Query: 388 -------LTFLEFFNATHNNLTGPIPQA 408
L+ L +N L +
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEV 306
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 53/238 (22%)
Query: 178 GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237
G + L+ PD + ++ L + + + + ++
Sbjct: 1 GAATLATLPAPINQIFPDADL--AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56
Query: 238 NDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYF 297
I L L L L + + +N +L +
Sbjct: 57 ASIQGI--EYLTNLEYLNLNG---NQITDISP----------LSNLVKLTNL-------- 93
Query: 298 SFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVL 357
Y N IT + Q +T+ L+ + L+ + + +ANL + L
Sbjct: 94 ------YIGTN--KITDISALQNLTN------LRELYLNEDNISD--ISPLANLTKMYSL 137
Query: 358 GLASNNLQGHIPSCLGSLTNLESLDLSKNR---------LTFLEFFNATHNNLTGPIP 406
L +N+ + L ++T L L +++++ LT L + +N + P
Sbjct: 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP 194
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 71/398 (17%), Positives = 131/398 (32%), Gaps = 88/398 (22%)
Query: 42 PSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN---IPKWLLNPSM 98
L NL +L + + N + ++ + +L++L L + N L N +
Sbjct: 84 TPLKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLT------LFNNQITDIDPLKN--L 133
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
N + L LS N + + + T ++ N +T P + NL++L LD
Sbjct: 134 TNLNRLELSSNTI-------SDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLD 183
Query: 159 LSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP 218
+S N +S + L + L L + ++L + L+ N L+
Sbjct: 184 ISSNKVSD--ISVLAKLTN-LESLIATNNQI--SDITPLGILTNLDELSLNGNQLKD--I 236
Query: 219 KSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQC 274
+LA+ L DL NNQI++ P L L +L L L I +
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS------------- 281
Query: 275 WNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGII 334
A + L + +N + + + + L +
Sbjct: 282 ----PLAGLTALTNL--------------ELNEN--QLEDISPISNLKN------LTYLT 315
Query: 335 LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF---- 390
L N + +++L LQ L +N + S L +LTN+ L N+++
Sbjct: 316 LYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL 371
Query: 391 -----LEFFNATHNNLTGPIPQANQFPTFGYSSFNGNS 423
+ T + + N
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 76/393 (19%), Positives = 136/393 (34%), Gaps = 88/393 (22%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100
S +L+Q+ L I S+ +E L N
Sbjct: 39 TVSQTDLDQVTTLQADRLG--------IKSIDGVEYL---------------------NN 69
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS 160
+ +N S N T + TK+ L++ N + P + NL++L L L
Sbjct: 70 LTQINFSNNQL-------TDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120
Query: 161 DNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS 220
+N ++ + L N + L+ L L + + L+ + + + K
Sbjct: 121 NNQITD--IDPLKNLTN-LNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD---LKP 172
Query: 221 LANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPS-KYFQCW 275
LAN LE D+ +N+++D L L L L+ I + G L +
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLN 229
Query: 276 NAM-----KFANSSQLRYM---ENFLSSYFSFDFYR-----YFPQNDYSITMSNEGQMMT 322
A+ + L + N +S+ N I+ + +T
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN--QISNISPLAGLT 287
Query: 323 HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382
L + L+ N+ + + I+NLK L L L NN+ P + SLT L+ L
Sbjct: 288 A------LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337
Query: 383 LSKNRLTF---------LEFFNATHNNLTGPIP 406
N+++ + + +A HN ++ P
Sbjct: 338 FYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 62/307 (20%), Positives = 106/307 (34%), Gaps = 48/307 (15%)
Query: 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGK 187
+ ++ K N+T + +L + L + + + + L+ ++
Sbjct: 24 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNN-LTQINFSNN 78
Query: 188 NFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGS 247
T N + L + +++N + P LAN L L NNQI D P L +
Sbjct: 79 QL--TDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKN 132
Query: 248 LLELNILVL----IQQLPCF--MGKLPSKYFQCW--NAMKFANSSQLRYME---NFLSSY 296
L LN L L I + + L F + AN + L ++ N +S
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192
Query: 297 FSFDFYR-----YFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANL 351
N I+ ++T+ L + L+ N+ ++A+L
Sbjct: 193 SVLAKLTNLESLIATNN--QISDITPLGILTN------LDELSLNGNQLKD--IGTLASL 242
Query: 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF---------LEFFNATHNNLT 402
L L LA+N + P L LT L L L N+++ L N L
Sbjct: 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 300
Query: 403 GPIPQAN 409
P +N
Sbjct: 301 DISPISN 307
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 61/412 (14%)
Query: 7 SELTRLTILLFY--LMTSDSPF--LDRLQRLSDFSGQI--PPSLGNLNQLQWLDLAFNNF 60
L LT + F +T +P L +L + + QI L NL L L L N
Sbjct: 65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ- 123
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPS-MKNFSYLNLSKNYFPRFDQHPT 119
+ ++ + +L++L RL+ + N + S + + L+
Sbjct: 124 ITDIDP-LKNLTNLNRLE------LSSNTISDISALSGLTSLQQLSFGNQ-------VTD 169
Query: 120 VLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179
+ P L T + IS N ++ S + L++L L ++N +S + LG + L
Sbjct: 170 LKPLANL-TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTN-L 223
Query: 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239
LSL G T + ++L +DL++N + P L+ L L NQI++
Sbjct: 224 DELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279
Query: 240 TFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSS 295
P L L L L L ++ + L + + ++ S + +
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
Query: 296 YFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQ 355
+F N ++ + +T+ + + N+ T +ANL +
Sbjct: 337 FFY--------NN--KVSDVSSLANLTN------INWLSAGHNQISD--LTPLANLTRIT 378
Query: 356 VLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFF----NATHNNLTG 403
LGL + +++ ++ L + T ++T
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 19/175 (10%)
Query: 42 PSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101
L L L L+L N L ++ I +L +L L I P ++ S+
Sbjct: 281 SPLAGLTALTNLELN-ENQLEDIS-PISNLKNLTYLT-LYFNNISDISP---VS-SLTKL 333
Query: 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSD 161
L N + + T I N ++ P + NL+ + L L+D
Sbjct: 334 QRLFFYNNKV-------SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384
Query: 162 NNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGK 216
+ + N S +V ++ G P T +G D++ NL
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGAL---IAPATISDGGSYTEPDITWNLPSYT 436
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 22/166 (13%)
Query: 7 SELTRLTILLFY--LMTSDSPF--LDRLQRLSDFSGQI--PPSLGNLNQLQWLDLAFNNF 60
+ LT LT L + SP L L L+ + I + +L +LQ L NN
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY-NNK 342
Query: 61 LRELPASIGSLSSLERLDTFPPMKIHGN-IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119
+ ++ S+ +L+++ L N I ++ + L L+ + T
Sbjct: 343 VSDVS-SLANLTNINWLS------AGHNQISDLTPLANLTRITQLGLNDQAW-------T 388
Query: 120 VLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLS 165
P + + P+ I + S D++ N S
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 7e-15
Identities = 71/371 (19%), Positives = 121/371 (32%), Gaps = 91/371 (24%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKWLLN 95
LN + + N+ +R+LPA++ S +E L+ ++ I +
Sbjct: 38 GFEDITLNNQKIVTFK-NSTMRKLPAALLDSFRQVELLN------LNDLQIEEIDTYAFA 90
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWI-CNLS 152
L + N LP + ++ +N+L+ +P I N
Sbjct: 91 -YAHTIQKLYMGFNAI-------RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141
Query: 153 SLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209
L L +S+NNL + Q + L L L N + + L ++S
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTS----LQNLQLSS-NRLTHVDLSLI--PSLFHANVS 194
Query: 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMG 265
+NLL +LA +E D +N IN + +EL IL L +
Sbjct: 195 YNLLS-----TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTDTA---- 242
Query: 266 KLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMT 322
N L + N L F + M
Sbjct: 243 -------------WLLNYPGLVEVDLSYNELEKIMYHPFVK----------MQR------ 273
Query: 323 HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382
L+ + +S+NR + + L+VL L+ N+L H+ LE+L
Sbjct: 274 -------LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324
Query: 383 LSKNRLTFLEF 393
L N + L+
Sbjct: 325 LDHNSIVTLKL 335
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 64/399 (16%), Positives = 118/399 (29%), Gaps = 80/399 (20%)
Query: 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLN 95
I +L + + +L++ + + + +P LL+
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLD 66
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSS 153
S + LNL+ + + I+ + N + P N+
Sbjct: 67 -SFRQVELLNLNDLQI-------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118
Query: 154 LYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210
L VL L N+LS + L+ LS+ N DTF + L+ + LS
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPK----LTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174
Query: 211 NLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGK 266
N L + + L +++ N ++ L + + L I +
Sbjct: 175 NRLTHVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVR----- 221
Query: 267 LPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKI 326
+ L+ N L+ Y
Sbjct: 222 ----------GPVNVELTILKLQHNNLTDTAWLLNYPG---------------------- 249
Query: 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386
L + LS N + M ++ L+ L +++N L + + L+ LDLS N
Sbjct: 250 ---LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305
Query: 387 RLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
L +E + L N T S+ + L
Sbjct: 306 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 50/241 (20%), Positives = 84/241 (34%), Gaps = 38/241 (15%)
Query: 39 QIPPS-LGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKW 92
+PP N+ L L L N L LP I + L L + N I
Sbjct: 107 YLPPHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLS------MSNNNLERIEDD 159
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLS 152
+ L LS N T + + + + H +S N L+ +
Sbjct: 160 TFQA-TTSLQNLQLSSNRL-------THVDLSLI-PSLFHANVSYNLLST-----LAIPI 205
Query: 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL 212
++ LD S N+++ G + L++L LQ N T +N L VDLS+N
Sbjct: 206 AVEELDASHNSIN----VVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNE 259
Query: 213 LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLP 268
L+ + LE + NN++ ++ + L +L L + + +
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Query: 269 S 269
Sbjct: 319 R 319
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 47/275 (17%), Positives = 89/275 (32%), Gaps = 60/275 (21%)
Query: 145 PSWICNLSSL-YVLDLSDNNLSGELLQCLGNFSG----GLSVLSLQGKNFFGTTPDTFMN 199
P + C S+L Y D ++ + F +++ + +
Sbjct: 8 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67
Query: 200 GSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL--- 256
+ +++L+ ++ + A ++ + N I P ++ L +LVL
Sbjct: 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127
Query: 257 -IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMS 315
+ LP + F N+ +L + +S+ N+
Sbjct: 128 DLSSLPRGI---------------FHNTPKLTTLS--MSN------------NNLERIED 158
Query: 316 NEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSL 375
+ Q T L+ + LSSNR ++ + L ++ N L S L
Sbjct: 159 DTFQATTS------LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIP 204
Query: 376 TNLESLDLSKNRLTF--------LEFFNATHNNLT 402
+E LD S N + L HNNLT
Sbjct: 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLT 239
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 28/168 (16%)
Query: 7 SELTRLTIL-LFYLMTSDSPFLDRLQRLSDFSG----QIPPSLGNLNQLQWLDLAFNNFL 61
S + L + Y + S ++ L D S + + +L L L NN L
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEEL-DASHNSINVVRGPV--NVELTILKLQHNN-L 238
Query: 62 RELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117
+ + + L +D + N I M+ L +S N + +
Sbjct: 239 TDTAW-LLNYPGLVEVD------LSYNELEKIMYHPFV-KMQRLERLYISNNRLVALNLY 290
Query: 118 PTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLS 165
+P ++ +S N+L + L L L N++
Sbjct: 291 GQPIP------TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 1e-14
Identities = 70/366 (19%), Positives = 119/366 (32%), Gaps = 91/366 (24%)
Query: 46 NLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKN 100
LN + + N+ +R+LPA++ S +E L+ ++ I +
Sbjct: 49 TLNNQKIVTFK-NSTMRKLPAALLDSFRQVELLN------LNDLQIEEIDTYAFAY-AHT 100
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWI-CNLSSLYVL 157
L + N LP + ++ +N+L+ +P I N L L
Sbjct: 101 IQKLYMGFNAI-------RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 152
Query: 158 DLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
+S+NNL + Q + L L L + L ++S+NLL
Sbjct: 153 SMSNNNLERIEDDTFQATTS----LQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLS 205
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSK 270
+LA +E D +N IN + +EL IL L +
Sbjct: 206 -----TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTDTA--------- 248
Query: 271 YFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIP 327
N L + N L F + M
Sbjct: 249 --------WLLNYPGLVEVDLSYNELEKIMYHPFVK----------MQR----------- 279
Query: 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387
L+ + +S+NR + + L+VL L+ N+L H+ LE+L L N
Sbjct: 280 --LERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335
Query: 388 LTFLEF 393
+ L+
Sbjct: 336 IVTLKL 341
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 7e-12
Identities = 64/399 (16%), Positives = 118/399 (29%), Gaps = 80/399 (20%)
Query: 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLN 95
I +L + + +L++ + + + +P LL+
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLD 72
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSS 153
S + LNL+ + + I+ + N + P N+
Sbjct: 73 -SFRQVELLNLNDLQI-------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 154 LYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210
L VL L N+LS + L+ LS+ N DTF + L+ + LS
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPK----LTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 211 NLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGK 266
N L + + L +++ N ++ L + + L I +
Sbjct: 181 NRLTHVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVR----- 227
Query: 267 LPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKI 326
+ L+ N L+ Y
Sbjct: 228 ----------GPVNVELTILKLQHNNLTDTAWLLNYPG---------------------- 255
Query: 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386
L + LS N + M ++ L+ L +++N L + + L+ LDLS N
Sbjct: 256 ---LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311
Query: 387 RLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
L +E + L N T S+ + L
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 9e-11
Identities = 50/241 (20%), Positives = 86/241 (35%), Gaps = 38/241 (15%)
Query: 39 QIPPSL-GNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKW 92
+PP + N+ L L L N L LP I + L L + N I
Sbjct: 113 YLPPHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLS------MSNNNLERIEDD 165
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLS 152
+ + L LS N T + + + + H +S N L+ +
Sbjct: 166 TFQ-ATTSLQNLQLSSNRL-------THVDLSLI-PSLFHANVSYNLLS-----TLAIPI 211
Query: 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL 212
++ LD S N+++ G + L++L LQ N T +N L VDLS+N
Sbjct: 212 AVEELDASHNSIN----VVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNE 265
Query: 213 LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLP 268
L+ + LE + NN++ ++ + L +L L + + +
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324
Query: 269 S 269
Sbjct: 325 R 325
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 47/279 (16%), Positives = 92/279 (32%), Gaps = 75/279 (26%)
Query: 138 NNLTGEIPSWICNLSSL-YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDT 196
N+ P + C S+L Y D ++ + + G ++L
Sbjct: 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQ----DVYFGFEDITL------------ 50
Query: 197 FMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
++ ++V ++ ++ L + +E+ +L + QI + + L +
Sbjct: 51 ----NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106
Query: 257 ----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQND 309
I+ LP F N L + N LSS F+
Sbjct: 107 GFNAIRYLP---------------PHVFQNVPLLTVLVLERNDLSSLPRGIFHN------ 145
Query: 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP 369
L + +S+N + + LQ L L+SN L H+
Sbjct: 146 -----------TPK------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 187
Query: 370 SCLGSLTNLESLDLSKNRLT------FLEFFNATHNNLT 402
L + +L ++S N L+ +E +A+HN++
Sbjct: 188 --LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 35/246 (14%)
Query: 27 LDRLQRLSDFSG---QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPM 83
+L+ L + S L +L+ L+ LDL N + S+E L
Sbjct: 57 FTKLELL-NLSSNVLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLH----- 105
Query: 84 KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLT 141
N + + + L+ N T+L +++++ + N +
Sbjct: 106 -AANNNISRVSCSRGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 142 G-EIPSWICNLSSLYVLDLSDNNLSG-ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMN 199
+ +L L+L N + + L L L N F +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK----LKTLDLSS-NKLAFMGPEFQS 212
Query: 200 GSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN-DTFPIWLGSLLELNILVL-- 256
+ + + L +N L I K+L LE DLR N + T + + +
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 257 IQQLPC 262
+++L
Sbjct: 272 VKKLTG 277
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 7e-14
Identities = 54/283 (19%), Positives = 93/283 (32%), Gaps = 49/283 (17%)
Query: 135 ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP 194
++ ++L + S + ++ LDLS N LS L F+ L +L+L
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVL--YET 73
Query: 195 DTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNIL 254
+ S LR +DL++N +Q L +E NN I+ + +
Sbjct: 74 LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRGQGKKNI 125
Query: 255 VL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQ 307
L I L + S+++Y++ N + + +
Sbjct: 126 YLANNKITMLR---------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 308 ------NDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLAS 361
I + LK + LSSN+ M + G+ + L +
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAK------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223
Query: 362 NNLQGHIPSCLGSLTNLESLDLSKNRLTF--LEFFNATHNNLT 402
N L I L NLE DL N L F + + +
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 8e-13
Identities = 44/247 (17%), Positives = 81/247 (32%), Gaps = 28/247 (11%)
Query: 27 LDRLQRLS----DFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
+R + + + ++ LDL+ N + A + + LE L+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN---- 64
Query: 83 MKIHGNIPKWLLN-PSMKNFSYLNLSKNYFPRFDQHP------------TVLPWTTLSTK 129
+ N+ L+ S+ L+L+ NY P + + +
Sbjct: 65 --LSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG-QG 121
Query: 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNF 189
++ ++ N +T S + LDL N + L S L L+LQ
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 190 FGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLL 249
+ + L+ +DLS N L + + A + LRNN++ L
Sbjct: 182 YDVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237
Query: 250 ELNILVL 256
L L
Sbjct: 238 NLEHFDL 244
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 32/207 (15%)
Query: 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
+ NG+ ++ ++ + L+ + + ++ DL N ++ L +L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 254 LVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFP 306
L L + + + S LR + N++
Sbjct: 63 LNLSSNVLYETLDL-----------------ESLSTLRTLDLNNNYVQELLVGPSIETLH 105
Query: 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366
+ +I+ + + K I L++N+ +Q L L N +
Sbjct: 106 AANNNISRVSCSRGQG-------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 367 -HIPSCLGSLTNLESLDLSKNRLTFLE 392
+ S LE L+L N + ++
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVK 185
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 36/209 (17%)
Query: 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGS-LSSLERLDTFPPMKIHGN----IPKWLL 94
I N N+ + + ++ L++ AS+ +++ LD + GN I L
Sbjct: 2 IHEIKQNGNRYKIEKVT-DSSLKQALASLRQSAWNVKELD------LSGNPLSQISAADL 54
Query: 95 NPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSL 154
LNLS N + +R ++ N + E+ S+
Sbjct: 55 A-PFTKLELLNLSSNVL-------YETLDLESLSTLRTLDLNNNYVQ-ELL----VGPSI 101
Query: 155 YVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHN 211
L ++NN+S Q G + L S ++ +DL N
Sbjct: 102 ETLHAANNNISRVSCSRGQ-------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 212 LLQG-KIPKSLANCAVLEISDLRNNQIND 239
+ + A+ LE +L+ N I D
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD 183
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 30/202 (14%), Positives = 56/202 (27%), Gaps = 28/202 (13%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLR-ELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLN 95
G +++Q+LDL N S +LE L+ + N + ++
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN------LQYNFIYDVKGQVVF 190
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLY 155
+K L+LS N + + N L I + +L
Sbjct: 191 AKLK---TLDLSSNKLAFMGPEFQSA------AGVTWISLRNNKLV-LIEKALRFSQNLE 240
Query: 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215
DL N L+ FS V ++ + T + +
Sbjct: 241 HFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC-- 296
Query: 216 KIPKSLANCAVLEISDLRNNQI 237
+ L + L ++
Sbjct: 297 ---EDLPAPFADRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
K ++ + + + + ++ L L+ N L + L T LE L+LS N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 390 FLEFF---------NATHNNLT 402
+ +N +
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQ 93
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 26/111 (23%)
Query: 144 IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203
I N + + ++D++L L + ++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQAL-------------------------ASLRQSAWNV 36
Query: 204 RMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW-LGSLLELNI 253
+ +DLS N L LA LE+ +L +N + +T + L +L L++
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL 87
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 5e-14
Identities = 41/265 (15%), Positives = 81/265 (30%), Gaps = 51/265 (19%)
Query: 26 FLDRLQRLSDFSG----QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE----RL 77
+++ L + +P +L Q+ L++ N L LP SL L+ RL
Sbjct: 57 LINQFSEL-QLNRLNLSSLPDNLPP--QITVLEIT-QNALISLPELPASLEYLDACDNRL 112
Query: 78 DTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISK 137
T P + +L++ N + P +L ++
Sbjct: 113 STLP--------------ELPASLKHLDVDNNQLTMLPELPALL--EYIN-------ADN 149
Query: 138 NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTF 197
N LT +P +L L + +N L+ L + + L L + N + P
Sbjct: 150 NQLT-MLPELPTSLEV---LSVRNNQLT-FLPELPES----LEALDVST-NLLESLPAVP 199
Query: 198 MNGSDLR----MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
+ N + IP+++ + L +N ++ L
Sbjct: 200 VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258
Query: 254 LVL-IQQLPCFMGKLPSKYFQCWNA 277
G+ + + +A
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADA 283
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 3e-13
Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 65/295 (22%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
++N + C ++ L L+ NLS L L ++VL + N + P+
Sbjct: 45 NRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLPP---QITVLEITQ-NALISLPE 97
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILV 255
+ L +D N L +P+ A+ L D+ NNQ+ P L +N
Sbjct: 98 LP---ASLEYLDACDNRLS-TLPELPASLKHL---DVDNNQLT-MLPELPALLEYINADN 149
Query: 256 -LIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITM 314
+ LP L L N L+ P
Sbjct: 150 NQLTMLPELPTSL----------------EVLSVRNNQLTF---------LP-------- 176
Query: 315 SNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQ----VLGLASNNLQGHIPS 370
++P+ L+ + +S+N + +P + N + HIP
Sbjct: 177 ----------ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPE 224
Query: 371 CLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
+ SL ++ L N L+ + + + + N R
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 32/217 (14%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE----RLDTFPPMKIHGNIPKWLL 94
+P L ++++ NN L LP SL L +L P
Sbjct: 134 MLPELPALL---EYINAD-NNQLTMLPELPTSLEVLSVRNNQLTFLPE------------ 177
Query: 95 NPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSL 154
++ L++S N P + +N +T IP I +L
Sbjct: 178 --LPESLEALDVSTNLLESLPAVPVRNHH--SEETEIFFRCRENRIT-HIPENILSLDPT 232
Query: 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
+ L DN LS + + L + + G + + D N + D
Sbjct: 233 CTIILEDNPLSSRIRESLSQQT---AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLEL 251
++ + + +TF +L L +
Sbjct: 290 ENKQSDVSQ----IWHAFEHEEHANTFSAFLDRLSDT 322
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 42/246 (17%), Positives = 76/246 (30%), Gaps = 63/246 (25%)
Query: 150 NLSSLYVLDLSDNNLSG---ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206
N SL + N +SG + + ++ + +N +
Sbjct: 9 NNFSL-SQNSFYNTISGTYADYFSAWDKWEK-QALPGENRNEAVSLLKECLINQ--FSEL 64
Query: 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNIL-VLIQQLPCFMG 265
L+ L +P +L + + ++ N + + P SL L+ + LP
Sbjct: 65 QLNRLNLS-SLPDNLPPQ--ITVLEITQNAL-ISLPELPASLEYLDACDNRLSTLPELPA 120
Query: 266 KLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK 325
L L N L+ P +
Sbjct: 121 SL----------------KHLDVDNNQLTM---------LP------------------E 137
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
+P +L+ I +N+ +P +L+ L V NN +P +LE+LD+S
Sbjct: 138 LPALLEYINADNNQL-TMLPELPTSLEVLSV----RNNQLTFLPELPE---SLEALDVST 189
Query: 386 NRLTFL 391
N L L
Sbjct: 190 NLLESL 195
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF--------LEFF 394
+ ++ + + G N + CL + L L++ L+ +
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPPQITVL 85
Query: 395 NATHNNLT 402
T N L
Sbjct: 86 EITQNALI 93
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 66/376 (17%), Positives = 113/376 (30%), Gaps = 98/376 (26%)
Query: 31 QRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN-- 88
+R IP + LDL N S LE L+ ++ N
Sbjct: 21 KRFVAVPEGIPTET------RLLDLGKNRIKTLNQDEFASFPHLEELE------LNENIV 68
Query: 89 --IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEI 144
+ N ++ N L L N ++P + + + IS+N + +
Sbjct: 69 SAVEPGAFN-NLFNLRTLGLRSNRL-------KLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 145 PSWICNLSSLYVLDLSDNNLSGELLQCL--GNFSG--GLSVLSLQGKNFFGTTPDTFMNG 200
+L +L L++ DN+L + FSG L L+L+ N + +
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-----YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 201 SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL---- 256
L ++ L H + S L++ ++ + DT L L L +
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 257 IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSN 316
+ +P + A + LR+
Sbjct: 236 LTAVP-------------YLA--VRHLVYLRF---------------------------- 252
Query: 317 EGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLT 376
+ LS N + + L LQ + L L P L
Sbjct: 253 ----------------LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296
Query: 377 NLESLDLSKNRLTFLE 392
L L++S N+LT LE
Sbjct: 297 YLRVLNVSGNQLTTLE 312
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 50/268 (18%), Positives = 84/268 (31%), Gaps = 57/268 (21%)
Query: 27 LDRLQRLSDFSGQI----PPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFP 81
L+ L + P + NL L+ L L +N L+ +P + LS+L +LD
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLD--- 110
Query: 82 PMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLI 135
I N + ++ + N L + N + S + +
Sbjct: 111 ---ISENKIVILLDYMFQ-DLYNLKSLEVGDNDL-------VYISHRAFSGLNSLEQLTL 159
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKN---- 188
K NLT + +L L VL L N++ + L L VL +
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR----LKVLEISHWPYLDT 215
Query: 189 -----FFGTT---------------PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLE 228
+G + LR ++LS+N + L L+
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275
Query: 229 ISDLRNNQINDTFPIWLGSLLELNILVL 256
L Q+ P L L +L +
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNV 303
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 42/264 (15%), Positives = 72/264 (27%), Gaps = 49/264 (18%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
+ +P I + +LDL N + +F L L L P
Sbjct: 19 HRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVSAVEPG 74
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILV 255
F N +LR + L N L+ + L D+ N+I L L L
Sbjct: 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134
Query: 256 L----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQN 308
+ + + F+ + L + L+S +
Sbjct: 135 VGDNDLVYISHRA---------------FSGLNSLEQLTLEKCNLTSIPTEALSH----- 174
Query: 309 DYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHI 368
+ L + L + S L L+VL ++ +
Sbjct: 175 -----LHG-------------LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 369 PSCLGSLTNLESLDLSKNRLTFLE 392
NL SL ++ LT +
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVP 240
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 45/272 (16%), Positives = 77/272 (28%), Gaps = 61/272 (22%)
Query: 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208
C+ V + + +L L D F + L ++L
Sbjct: 9 CSAQDRAV-LCHRKRFV-AVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL 63
Query: 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFM 264
+ N++ P + N L LR+N++ L L L + I L
Sbjct: 64 NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL--- 120
Query: 265 GKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQNDYSITMSNEGQMM 321
F + L+ +E N L F +++
Sbjct: 121 ------------DYMFQDLYNLKSLEVGDNDLVYISHRAFS----------GLNS----- 153
Query: 322 THDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESL 381
L+ + L ++++L GL VL L N+ L L+ L
Sbjct: 154 --------LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 382 DLSKNRLTF-----------LEFFNATHNNLT 402
++S L + TH NLT
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 49/198 (24%)
Query: 27 LDRLQRLSDFSGQI----PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82
L L L I S L +L+ L+++ +L + + +L L
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS---- 230
Query: 83 MKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLIS 136
I +P + + +LNLS N + + + L +++ +
Sbjct: 231 --ITHCNLTAVPYLAVRH-LVYLRFLNLSYNPI-------STIEGSMLHELLRLQEIQLV 280
Query: 137 KNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDT 196
L P L+ L VL++S N L+ +L+
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLT-----------------TLE--------ESV 315
Query: 197 FMNGSDLRMVDLSHNLLQ 214
F + +L + L N L
Sbjct: 316 FHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
IP + + L NR A+ L+ L L N + P +L NL +L L
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 386 NRLTFL--EFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425
NRL + F NLT N+ F L
Sbjct: 90 NRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNL 130
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 57/350 (16%), Positives = 108/350 (30%), Gaps = 37/350 (10%)
Query: 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNP---SMKNFSYLNL 106
L+++ N + I SLS L L I N ++L + YL+L
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILI------ISHNRIQYLDISVFKFNQELEYLDL 76
Query: 107 SKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTG-EIPSWICNLSSLYVLDLSDNNLS 165
S N + ++H +S N I N+S L L LS +L
Sbjct: 77 SHNKL-------VKISCHPT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 166 GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMN--GSDLRMVDLSHNLLQGKIPKSLAN 223
+ + + + +L L P+ + L +V ++ + S+
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188
Query: 224 CAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283
A LE+S+++ ++ +L L +L + L + F ++
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI--RILQLVWH 246
Query: 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE 343
+ + Y +R F + S+ L + S+ F
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLK---------------ALSIHQVVSDVFGFP 291
Query: 344 MPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEF 393
+ + + + C ++ LD S N LT F
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 48/363 (13%), Positives = 116/363 (31%), Gaps = 21/363 (5%)
Query: 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMK 99
I GN++QL++L L+ + + I L+ + L P+ L + + +
Sbjct: 107 ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166
Query: 100 NFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTG--EIPSWICNLSSLYVL 157
+ + N F +V L ++ N + I + + L L
Sbjct: 167 SLH-IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225
Query: 158 DLSDNNLSGELLQCLGNFSGGLSV-------LSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210
L++ + + +V + LQG+ F + + L + +
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285
Query: 211 NLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270
++ + + I + + + + L + +
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN---NLLTDTVFE 342
Query: 271 YFQCWNAMKF--ANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPD 328
++ +QL+ + + + S++ + +
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---TK 399
Query: 329 ILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL 388
L + +SSN + + ++VL L SN ++ IP + L L+ L+++ N+L
Sbjct: 400 SLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456
Query: 389 TFL 391
+
Sbjct: 457 KSV 459
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 65/399 (16%), Positives = 139/399 (34%), Gaps = 54/399 (13%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGNIPKWLLNPSMK 99
+ +L++L+ L ++ N ++ L S+ LE LD + N +
Sbjct: 38 TSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLD------LSHNKLVKISCHPTV 90
Query: 100 NFSYLNLSKNYFPRFDQHPTVLPWTTL---STKIRHYLISKNNLTGEIPSWICNLSSLYV 156
N +L+LS N F LP ++++ +S +L I +L+ V
Sbjct: 91 NLKHLDLSFNAF-------DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Query: 157 -LDLSDNNLSGELLQCLGNFS-GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
L L + E + L +F+ L ++ K F + ++L + ++ L
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF-MGKLPSKYFQ 273
K L+ A L+ + +N + S + + LV + F + + +
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263
Query: 274 CWNAMKFANSS----QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQM--------- 320
+ ++ +S + + + + + Y F + + +M
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323
Query: 321 -------MTHDKIPDI----------LKGIILSSNRFD--GEMPTSIANLKGLQVLGLAS 361
+++ + D L+ +IL N+ ++ +K LQ L ++
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 362 NNLQGHIPSCL-GSLTNLESLDLSKNRLTFLEFFNATHN 399
N++ +L SL++S N LT F
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 61/389 (15%), Positives = 120/389 (30%), Gaps = 46/389 (11%)
Query: 8 ELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPAS 67
L + ++L + L + + N L + F L S
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185
Query: 68 IGSLSSLERLDTFP-PMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126
+ ++++LE + + +L N NL+ N +
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245
Query: 127 STKIRHYLISKNNLTGEIPSWI-----CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181
T + ++ IS L G++ +L +L + + + FS +++
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN-MNI 304
Query: 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241
+ S +D S+NLL + ++ + LE L+ NQ
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ----- 359
Query: 242 PIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFS 298
+++L L+ + +N +S
Sbjct: 360 ---------------LKELSKIAE-------------MTTQMKSLQQLDISQNSVSYDEK 391
Query: 299 FDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLG 358
+ SN +P +K + L SN+ +P + L+ LQ L
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450
Query: 359 LASNNLQGHIPSC-LGSLTNLESLDLSKN 386
+ASN L+ +P LT+L+ + L N
Sbjct: 451 VASNQLK-SVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
+ + +S N + I +L L++L ++ N +Q S LE LDLS
Sbjct: 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78
Query: 386 NRLTFLEFFNATH 398
N+L + +
Sbjct: 79 NKLVKISCHPTVN 91
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 48/267 (17%), Positives = 86/267 (32%), Gaps = 58/267 (21%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNN---LSGELLQCLGNFSGGLSVLSLQGKNFFGT 192
++ L+ E+P I S+ L+L +NN + + + L + L VL L +
Sbjct: 62 TRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHH----LEVLQLGRNSIRQI 114
Query: 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELN 252
F + L ++L N L + + L LRNN I + L
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174
Query: 253 ILVL-----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRY 304
L L ++ + A F L+Y+ + +
Sbjct: 175 RLDLGELKKLEYIS-------------EGA--FEGLFNLKYLNLGMCNIKDMPNLTPLVG 219
Query: 305 FPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364
L+ + +S N F P S L L+ L + ++ +
Sbjct: 220 -------------------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 365 QGHIPSCLGSLTNLESLDLSKNRLTFL 391
+ L +L L+L+ N L+ L
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSL 281
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 36/230 (15%)
Query: 39 QIPP-SLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKW 92
I + +L+ L+ L L N +R++ L+SL L+ + N IP
Sbjct: 89 MIQADTFRHLHHLEVLQLG-RNSIRQIEVGAFNGLASLNTLE------LFDNWLTVIPSG 141
Query: 93 LLNPSMKNFSYLNLSKNYFPRFDQHPTVLP---WTTLSTKIRHYLISKNNLTGEIPSWIC 149
+ L L N +P + + + +R L L
Sbjct: 142 AFEY-LSKLRELWLRNNPI-------ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 150 NLSSLYVLDLSDNNLSGELLQCLGNFSG--GLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207
L +L L+L N+ + N + GL L + G +F P +F S L+ +
Sbjct: 194 GLFNLKYLNLGMCNIKD-----MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQI----NDTFPIWLGSLLELNI 253
+ ++ + + A L +L +N + +D F L L+EL++
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP-LRYLVELHL 297
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 49/229 (21%), Positives = 84/229 (36%), Gaps = 39/229 (17%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKWL 93
++P + + ++L+L NN ++ + A L LE L + N I
Sbjct: 68 EVPQGI--PSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQ------LGRNSIRQIEVGA 118
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNL 151
N + + + L L N+ TV+P +K+R + N + +
Sbjct: 119 FNG-LASLNTLELFDNWL-------TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 152 SSLYVLDLSDNN----LSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207
SL LDL + +S + L N L L+L N L ++
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFN----LKYLNLGMCNI--KDMPNLTPLVGLEELE 224
Query: 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQI----NDTFPIWLGSLLELN 252
+S N P S + L+ + N+Q+ + F L SL+ELN
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELN 272
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 45/197 (22%), Positives = 68/197 (34%), Gaps = 24/197 (12%)
Query: 27 LDRLQRLSDFSG----QIPP-SLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTF 80
L L L + IP + L++L+ L L N + +P+ + SL RLD
Sbjct: 122 LASLNTL-ELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLG 179
Query: 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNL 140
K+ I + + N YLNL +P T + +S N+
Sbjct: 180 ELKKLE-YISEGAFE-GLFNLKYLNLGMCNI-------KDMPNLTPLVGLEELEMSGNHF 230
Query: 141 TGEIPSWICNLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTF 197
P LSSL L + ++ +S L + L L+L N D F
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS----LVELNLAHNNLSSLPHDLF 286
Query: 198 MNGSDLRMVDLSHNLLQ 214
L + L HN
Sbjct: 287 TPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
IP + + L N + +L L+VL L N+++ L +L +L+L
Sbjct: 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132
Query: 386 NRLTFLE 392
N LT +
Sbjct: 133 NWLTVIP 139
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 44/245 (17%)
Query: 152 SSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHN 211
+ + + LS E+ Q L+L N DTF + L ++ L N
Sbjct: 54 NQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 212 LLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKL 267
++ + A L +L +N + L +L L L I+ +P
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP------ 163
Query: 268 PSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIP 327
+ F L ++ L Y + + + N
Sbjct: 164 ---------SYAFNRVPSLMRLD--LGELKKL---EYISEGAFE-GLFN----------- 197
Query: 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387
LK + L + ++ L GL+ L ++ N+ P L++L+ L + ++
Sbjct: 198 --LKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 388 LTFLE 392
++ +E
Sbjct: 254 VSLIE 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 52/267 (19%), Positives = 85/267 (31%), Gaps = 52/267 (19%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN--FFGTT 193
+ LT +P+ I SS L+L N L + L+ LSL F G
Sbjct: 15 NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCC 70
Query: 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPI-WLGSLLELN 252
+ + L+ +DLS N + + + LE D +++ + SL L
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 253 ILVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYF 305
L + + F S L ++ N F D +
Sbjct: 130 YLDISHTHTRVAF---------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365
L + LS + + PT+ +L LQVL ++ NN
Sbjct: 175 RN----------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 366 GHIPSCLGSLTNLESLDLSKNRLTFLE 392
L +L+ LD S N + +
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSK 239
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 51/277 (18%), Positives = 88/277 (31%), Gaps = 43/277 (15%)
Query: 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSG- 177
T +P T + + + N L L+ L L LS N LS + C + G
Sbjct: 20 TSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGT 77
Query: 178 -GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSL-ANCAVLEISDLRNN 235
L L L N T F+ L +D H+ L+ S+ + L D+ +
Sbjct: 78 TSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 236 QINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NF 292
F L L +L + + + + + F L +++
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAG----------NSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 293 LSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLK 352
L ++ S L+ + +S N F L
Sbjct: 187 LEQ---------LSPTAFNSLSS--------------LQVLNMSHNNFFSLDTFPYKCLN 223
Query: 353 GLQVLGLASNNLQGHIPSCLGSL-TNLESLDLSKNRL 388
LQVL + N++ L ++L L+L++N
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 48/223 (21%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100
S L++LDL+FN + + ++ L LE LD
Sbjct: 71 SQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLD---------------------- 107
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
+ + ++ + + IS + LSSL VL
Sbjct: 108 -----FQHS------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156
Query: 159 LSDNN----LSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
++ N+ ++ L N L+ L L +P F + S L+++++SHN
Sbjct: 157 MAGNSFQENFLPDIFTELRN----LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 215 GKIPKSLANCAVLEISDLRNNQI----NDTFPIWLGSLLELNI 253
L++ D N I + SL LN+
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 33/196 (16%)
Query: 9 LTRLTIL-LFY----LMTSDSPFLDRLQRLSDFSG----QIPPS--LGNLNQLQWLDLAF 57
T L L L + M+S+ L++L+ L DF Q+ +L L +LD++
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHL-DFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 58 NNFLRELPASI-GSLSSLERLDTFPPMKIHGNIPKWLLNPSM----KNFSYLNLSKNYFP 112
+ R I LSSLE L + GN + P + +N ++L+LS+
Sbjct: 136 TH-TRVAFNGIFNGLSSLEVLK------MAGNSFQENFLPDIFTELRNLTFLDLSQCQL- 187
Query: 113 RFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQ 170
L T + + ++ +S NN L+SL VLD S N++ Q
Sbjct: 188 ------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 171 CLGNFSGGLSVLSLQG 186
L +F L+ L+L
Sbjct: 242 ELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 33/178 (18%)
Query: 7 SELTRLTILLFY-----LMTSDSPF--LDRLQRLSDFSGQI----PPSLGNLNQLQWLDL 55
L +L L F M+ S F L L L L+ L+ L +
Sbjct: 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157
Query: 56 AFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNY 110
A N+F I L +L LD + + N S+ + LN+S N
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLD------LSQCQLEQLSPTAFN-SLSSLQVLNMSHNN 210
Query: 111 FPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNL-SSLYVLDLSDNNLS 165
F L ++ S N++ + + SSL L+L+ N+ +
Sbjct: 211 F-------FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 61/364 (16%), Positives = 113/364 (31%), Gaps = 61/364 (16%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKWLLN 95
S L LQ+L + + + LSSL L + N + N
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK------LDYNQFLQLETGAFN 100
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWI-CNLSSL 154
+ N L L++ T + ++ NN+ P+ N+
Sbjct: 101 -GLANLEVLTLTQCNLDGAVLSGNFFKPL---TSLEMLVLRDNNIKKIQPASFFLNMRRF 156
Query: 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
+VLDL+ N + C + L+ QGK+F T + S + + D++ L
Sbjct: 157 HVLDLTFNKVKSI---CEEDL------LNFQGKHF------TLLRLSSITLQDMNEYWLG 201
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI--QQLPCFMGKLPSKYF 272
+ + + DL N ++ + + + F
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 273 QCWNAMKFAN--SSQLRYME---NFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIP 327
+ + F +S ++ + + + + F +F
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTD-------------------- 300
Query: 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387
L+ + L+ N + + L L L L+ N L +L LE LDLS N
Sbjct: 301 --LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 388 LTFL 391
+ L
Sbjct: 359 IRAL 362
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 58/303 (19%), Positives = 99/303 (32%), Gaps = 34/303 (11%)
Query: 103 YLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWIC-NLSSLYVLDL 159
Y++LS N L T+ S ++ + + I + LSSL +L L
Sbjct: 34 YVDLSLNSI-------AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 160 SDN---NLSGELLQCLGNFSGGLSVLSLQGKNFFGTT--PDTFMNGSDLRMVDLSHNLLQ 214
N L L N L VL+L N G + F + L M+ L N ++
Sbjct: 87 DYNQFLQLETGAFNGLAN----LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142
Query: 215 GKIPKSL-ANCAVLEISDLRNNQI----NDTFPIWLGSLLELNILVLIQQLPCFMGKLPS 269
P S N + DL N++ + + G L L I L
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202
Query: 270 KYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDI 329
+C N K + + L N + F+ + + M
Sbjct: 203 --EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
K + F G + ++ L+ + + + S T+LE L L++N +
Sbjct: 261 FKD--PDNFTFKGLEASG------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 390 FLE 392
++
Sbjct: 313 KID 315
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 67/404 (16%), Positives = 113/404 (27%), Gaps = 95/404 (23%)
Query: 27 LDRLQRLSDFSGQIPPSLG-----NLNQLQWLDLAFNNFLRELPASI-GSLSSLERLD-- 78
L LQ L + L+ L L L +N +L L++LE L
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLT 111
Query: 79 ------------TFPPMK------IHGN----IPKWLLNPSMKNFSYLNLSKNYFPR--- 113
F P+ + N I +M+ F L+L+ N
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
Query: 114 --FDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQC 171
+ I +++ L E +S+ LDLS N
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE---SM 228
Query: 172 LGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLAN--CAVLEI 229
F ++ +Q ++ S H + + + ++
Sbjct: 229 AKRFFDAIAGTKIQ---------SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 230 SDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQ 285
DL ++I +L L L I ++ F +
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID---------------DNAFWGLTH 324
Query: 286 LRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342
L + +NFL S S F + + L+ + LS N
Sbjct: 325 LLKLNLSQNFLGSIDSRMF----------------------ENLDK-LEVLDLSYNHIRA 361
Query: 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386
S L L+ L L +N L+ LT+L+ + L N
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 40/264 (15%), Positives = 85/264 (32%), Gaps = 41/264 (15%)
Query: 3 RCLCSE----LTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFN 58
+ +C E L L + ++ + + + LDL+ N
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW----LGWEKCGNPFKNTSITTLDLSGN 222
Query: 59 NFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118
F + + ++ + + + ++ + F +
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------NFKDPDNFTFKGLEASG 276
Query: 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWIC-NLSSLYVLDLSDNNLS---GELLQCLGN 174
T +SK+ + + + + + L L L+ N ++ L +
Sbjct: 277 V----KTCD-------LSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 175 FSGGLSVLSLQGKNFFGTTPD-TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233
L L+L NF G+ F N L ++DLS+N ++ +S L+ L
Sbjct: 325 ----LLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 234 NNQI----NDTFPIWLGSLLELNI 253
NQ+ + F L SL ++ +
Sbjct: 380 TNQLKSVPDGIFD-RLTSLQKIWL 402
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-10
Identities = 40/229 (17%), Positives = 67/229 (29%), Gaps = 33/229 (14%)
Query: 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPK 91
R+ + ++ LQ L L G P
Sbjct: 79 RIPSRILFGALRVLGISGLQELTLENLEVT-------------------------GTAPP 113
Query: 92 WLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNL 151
LL + + + LNL + D L L ++ I++ + +
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQ-QWLKPGLKVLSIAQAHSLNFSCEQVRVF 172
Query: 152 SSLYVLDLSDNNLSGEL----LQCLGNFSG--GLSVLSLQGKNFFGTTPDTFMNGSDLRM 205
+L LDLSDN GE C F L++ + + G L+
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232
Query: 206 VDLSHNLLQGKIPKSL-ANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
+DLSHN L+ + L +L + L L++
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 50/330 (15%), Positives = 87/330 (26%), Gaps = 75/330 (22%)
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSW---ICN 150
L ++ YL + Q ++ S ++ + + I +
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIK----SLSLKRLTVRAARIPSRILFGALRVLG 93
Query: 151 LSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMN------GSDLR 204
+S L L L + ++G L +G + L +N T D ++ L+
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152
Query: 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFM 264
++ ++ + + L DL +N L S L +Q L
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--LISALCPLKFPTLQVLALRN 210
Query: 265 GKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD 324
+ + C A QL+
Sbjct: 211 AGMETPSGVCSAL--AAARVQLQG------------------------------------ 232
Query: 325 KIPDILKGIILSSNRFDG-EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDL 383
+ LS N S L L L+ L+ +P L + L LDL
Sbjct: 233 --------LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDL 281
Query: 384 SKNRLTFLEFF---------NATHNNLTGP 404
S NRL + N
Sbjct: 282 SYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 42/226 (18%), Positives = 65/226 (28%), Gaps = 30/226 (13%)
Query: 29 RLQRLS----DFSGQIPPSLGNL--NQLQWLDLAFNNFLRELPASIGSLS-----SLERL 77
LQ L+ + +G PP L L L+L N A + L L+ L
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVL 154
Query: 78 DTFPPMKIHGNIPKWLLNPS---MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYL 134
I S L+LS N + L ++
Sbjct: 155 S------IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLA 207
Query: 135 ISKNNLT---GEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191
+ + G + L LDLS N+L ++ L+ L+L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
Query: 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237
L ++DLS+N L P + L+ N
Sbjct: 268 VPKGLPAK---LSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 53/293 (18%), Positives = 78/293 (26%), Gaps = 83/293 (28%)
Query: 138 NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDT- 196
N L SL L + + + LS+ L + +
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQ--FTDIIKSLSLKRLTVRAARIPSRILF 86
Query: 197 ----FMNGSDLRMVDLSHNLLQGKIPKSLANCAV--LEISDLRNNQIN--DTFPIWLGSL 248
+ S L+ + L + + G P L L I +LRN D + L
Sbjct: 87 GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146
Query: 249 LELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQN 308
L+ + VL + S FS + R FP
Sbjct: 147 LKPGLKVL-------------------------------SIAQAHSLNFSCEQVRVFPA- 174
Query: 309 DYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIA----NLKGLQVLGLASNNL 364
L + LS N GE A LQVL L + +
Sbjct: 175 ---------------------LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 365 Q---GHIPSCLGSLTNLESLDLSKNRLTF------------LEFFNATHNNLT 402
+ G + + L+ LDLS N L L N + L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 4e-10
Identities = 67/430 (15%), Positives = 132/430 (30%), Gaps = 101/430 (23%)
Query: 26 FLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLREL-PASIGSL--------SSL-- 74
++++ RL + + N+++LQ L L EL PA + + +
Sbjct: 112 YIEQRDRLYNDNQVFAK--YNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 75 -----ERLDTFPPMKIH----GNI--PKWLLNPSMKNFSYLNLSKNYFPRFDQHPTV-LP 122
++ KI N P+ +L ++ + N+ R D + L
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKL-LYQIDPNWTSRSDHSSNIKLR 226
Query: 123 WTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD-LSDNNLSGELLQCLGNFSGGLSV 181
++ ++R L SK L VL + + F+ +
Sbjct: 227 IHSIQAELRRLLKSKPYEN-----------CLLVLLNVQNAK-------AWNAFNLSCKI 268
Query: 182 LSLQGKNFFGTTPDT----FMNG---SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234
L TT F++ + + + S L ++ L DL
Sbjct: 269 LL--------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319
Query: 235 NQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQL-RYMENFL 293
++ T P L+I+ + W+ K N +L +E+ L
Sbjct: 320 REVLTTNP------RRLSII----------AESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 294 SSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKG 353
+ ++ + F + S+ + IP IL +I M + N
Sbjct: 364 NVLEPAEYRKMF--DRLSVFPPSA-------HIPTILLSLIWFDVIKSDVM--VVVNK-- 410
Query: 354 LQVLGLA---SNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNAT---HNNLTGPIPQ 407
L L IPS L + + +R + ++ +N ++ P
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYL 469
Query: 408 ANQFPTF-GY 416
F + G+
Sbjct: 470 DQYFYSHIGH 479
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 6e-10
Identities = 63/394 (15%), Positives = 127/394 (32%), Gaps = 66/394 (16%)
Query: 43 SLGNLNQLQWLDLAFNNFLRELP--ASIGSLSSLERLDTFPPMKIHGN----IPKWLLNP 96
S + L+ LDL+FN+ LP G+L+ L L + + +
Sbjct: 116 SCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLG------LSAAKFRQLDLLPVAH 168
Query: 97 SMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYV 156
+ L+L + + +T + H + N+L ++++L
Sbjct: 169 LHLSCILLDLVSYHIKGGE----TESLQIPNTTVLHLVFHPNSLFSVQ--VNMSVNALGH 222
Query: 157 LDLSDNNLSGELLQCLGNFSG----GLSVLSLQGKNFFGTTPDT-----FMNGSDLRMVD 207
L LS+ L+ E Q L F G ++L++ ++ T + F + ++
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Query: 208 LSHNLLQGKIPKSLANCA-----VLEISDLRNNQINDTFPIWLGSLLELNILVL----IQ 258
+ + + +I + + L I ++N + E+NI +L
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342
Query: 259 QLP--CF---------------MGKLPSKYFQCWNAMKFANSSQLRYMENFLSS----YF 297
+ C + L N L +
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-----KRLQTLILQRNGLKNFFKVAL 397
Query: 298 SFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVL 357
D S+ N + + + LSSN G + + ++VL
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL 455
Query: 358 GLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFL 391
L +N + IP + L L+ L+++ N+L +
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 58/381 (15%), Positives = 122/381 (32%), Gaps = 65/381 (17%)
Query: 39 QIPPS-LGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGNIPKWLLNP 96
++ + L++L+ L L+ N +R L + LE LD + N + +
Sbjct: 66 ELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLD------VSHNRLQNISCC 118
Query: 97 SMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYV 156
M + +L+LS N + L + NL+ L
Sbjct: 119 PMASLRHLDLSFN------------DFDVLP----------------VCKEFGNLTKLTF 150
Query: 157 LDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM--NGSDLRMVDLSHNLLQ 214
L LS L + + +L L + G ++ N + L +V ++L
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQC 274
++ S+ L++S+++ N N + L EL + + + K
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTF--LSELTRGPTLLNVTLQHIETTWKCSV- 267
Query: 275 WNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILK 331
+F + Y+ ++ + + Y S+ + +
Sbjct: 268 -KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH--------------- 311
Query: 332 GIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFL 391
+ + F + + + L+ ++ C S ++ L+ ++N T
Sbjct: 312 ---VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368
Query: 392 EFFN-ATHNNLTGPIPQANQF 411
F +T L I Q N
Sbjct: 369 VFQGCSTLKRLQTLILQRNGL 389
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-10
Identities = 43/284 (15%), Positives = 86/284 (30%), Gaps = 58/284 (20%)
Query: 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLS---GELLQCLGNF 175
+P L + N +T NL +L+ L L +N +S L
Sbjct: 44 EKVP-KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK- 101
Query: 176 SGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPK-SLANCAVLEISDLRN 234
L L L L+ + + N + K+ K + + +L
Sbjct: 102 ---LERLYLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQMIVVELGT 154
Query: 235 NQINDTF--PIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288
N + + + +L+ + + I +P + + ++L
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---------------PPSLTELHL 199
Query: 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSI 348
N ++ + ++N L + LS N S+
Sbjct: 200 DGNKITKVDAASLKG----------LNN-------------LAKLGLSFNSISAVDNGSL 236
Query: 349 ANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392
AN L+ L L +N L +P L ++ + L N ++ +
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 44/227 (19%), Positives = 78/227 (34%), Gaps = 33/227 (14%)
Query: 40 IPP-SLGNLNQLQWLDLAFNNFLRELPASIGS-LSSLERLDTFPPMKIHGN----IPKWL 93
I NL L L L NN + ++ + L LERL + N +P+ +
Sbjct: 67 IKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLY------LSKNQLKELPEKM 119
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEI--PSWIC 149
K L + +N T + + + ++ + N L
Sbjct: 120 P----KTLQELRVHENEI-------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209
+ L + ++D N++ + G L+ L L G + ++L + LS
Sbjct: 169 GMKKLSYIRIADTNITT--IP-QGLPPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
N + SLAN L L NN++ P L + ++ L
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYL 270
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 56/300 (18%), Positives = 100/300 (33%), Gaps = 51/300 (17%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSG--GLSVLSLQGKNFFGTT 193
S L ++P + +LDL +N ++ E+ G+F L L L +
Sbjct: 39 SDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIKD--GDFKNLKNLHTLILINNKISKIS 92
Query: 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSL-ANCAVLEISDLRNNQINDTFPIWLGSLLELN 252
P F L + LS N L+ ++P+ + L + N+I L ++
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMI 148
Query: 253 ILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM---ENFLSSYFSFDFYRYFPQND 309
++ L P + + FQ +L Y+ + +++ PQ
Sbjct: 149 VVEL-GTNPLKSSGIENGAFQ--------GMKKLSYIRIADTNITT---------IPQG- 189
Query: 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP 369
+P L + L N+ S+ L L LGL+ N++
Sbjct: 190 ----------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 370 SCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKP 429
L + +L L L+ N+L + A H + N G + F K
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 51/254 (20%), Positives = 81/254 (31%), Gaps = 58/254 (22%)
Query: 40 IPP-SLGNLNQLQWLDLAFN-----------------------NFLRELPASIGSLSSLE 75
+ L L L L N N L E+P SSL
Sbjct: 69 LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLV 126
Query: 76 RLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIR 131
L IH N +PK + + ++N + + + N ++ P K+
Sbjct: 127 ELR------IHDNRIRKVPKGVFS-GLRNMNCIEMGGNPL----ENSGFEPGAFDGLKLN 175
Query: 132 HYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKN 188
+ IS+ LT IP + +L L L N + E L L L L
Sbjct: 176 YLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSK----LYRLGLGHNQ 228
Query: 189 FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI----NDTFP-- 242
+ LR + L +N L ++P L + +L++ L N I + F
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 243 IWLGSLLELNILVL 256
+ N + L
Sbjct: 288 GFGVKRAYYNGISL 301
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 58/277 (20%)
Query: 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVL 182
+S + N+++ L LY L L +N +S + L L L
Sbjct: 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK----LQKL 107
Query: 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPK-SLANCAVLEISDLRNNQINDTF 241
+ + P+ S L + + N ++ K+PK + + ++ N + ++
Sbjct: 108 YISKNHLVEIPPNLP---SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS- 162
Query: 242 PIWLGSLLELNILVL------IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSS 295
G+ L + L + +P + ++L N + +
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDL---------------PETLNELHLDHNKIQA 207
Query: 296 YFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQ 355
D R S L + L N+ S++ L L+
Sbjct: 208 IELEDLLR----------YSK-------------LYRLGLGHNQIRMIENGSLSFLPTLR 244
Query: 356 VLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392
L L +N L +P+ L L L+ + L N +T +
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 51/295 (17%), Positives = 83/295 (28%), Gaps = 42/295 (14%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
S L +P I +LDL +N++S L L L
Sbjct: 41 SDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEK 96
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSL-ANCAVLEISDLRNNQINDTFPIWLGSLLELNIL 254
F L+ + +S N L +IP +L ++ L + +N+I L +N +
Sbjct: 97 AFSPLRKLQKLYISKNHLV-EIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCI 152
Query: 255 VLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITM 314
+ P F + LR E L+
Sbjct: 153 EM-GGNPLENSGFEPGAFDG------LKLNYLRISEAKLTGI------------------ 187
Query: 315 SNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGS 374
+P+ L + L N+ + L LGL N ++ L
Sbjct: 188 --------PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239
Query: 375 LTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKP 429
L L L L N+L+ + L N G + F +
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 31/176 (17%)
Query: 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYL 104
+L +L ++ L +P +L L + N I L L
Sbjct: 173 KLNYLRISEAK-LTGIPK--DLPETLNELH------LDHNKIQAIELEDLL-RYSKLYRL 222
Query: 105 NLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN 162
L N ++ +LS +R + N L+ +P+ + +L L V+ L N
Sbjct: 223 GLGHN-------QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
Query: 163 NLS---GELLQCLGNFSGG--LSVLSLQGKN--FFGTTPDTFMNGSDLRMVDLSHN 211
N++ +G + +SL ++ P TF +D + +
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 41/271 (15%), Positives = 75/271 (27%), Gaps = 68/271 (25%)
Query: 150 NLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206
L L L +S N+L L L L + F ++ +
Sbjct: 100 PLRKLQKLYISKNHLVEIPPNLPS-------SLVELRIHDNRIRKVPKGVFSGLRNMNCI 152
Query: 207 DLSHNLLQ-GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLP 261
++ N L+ + L + ++ I LN L L IQ +
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQAIE 209
Query: 262 CFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQNDYSITMSNEG 318
S+L + N + + +
Sbjct: 210 ---------------LEDLLRYSKLYRLGLGHNQIRMIENGSLS----------FLPT-- 242
Query: 319 QMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS-------C 371
L+ + L +N+ +P + +LK LQV+ L +NN+ +
Sbjct: 243 -----------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGF 289
Query: 372 LGSLTNLESLDLSKNRLTFLEFFNATHNNLT 402
+ L N + + E AT +T
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 4e-09
Identities = 43/235 (18%), Positives = 74/235 (31%), Gaps = 42/235 (17%)
Query: 174 NFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233
S +L+L ++F + L ++ LS N ++ + A L +L
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120
Query: 234 NNQINDTFPIWLGSLLELNILVL----IQQLP----CFMGKLPSKYFQCWNAMK------ 279
+N++ L +L L L I+ +P + L +
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 280 FANSSQLRYM---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILS 336
F S LRY+ L + L + LS
Sbjct: 181 FEGLSNLRYLNLAMCNLREIPNLTPLIK-------------------------LDELDLS 215
Query: 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFL 391
N P S L LQ L + + +Q + +L +L ++L+ N LT L
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-08
Identities = 52/238 (21%), Positives = 82/238 (34%), Gaps = 45/238 (18%)
Query: 31 QRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN- 88
+ L + I + + L+L N ++ + + L LE L + N
Sbjct: 53 KNLREVPDGISTNT------RLLNLHENQ-IQIIKVNSFKHLRHLEILQ------LSRNH 99
Query: 89 ---IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGE 143
I N + N + L L N T +P +K++ + N +
Sbjct: 100 IRTIEIGAFNG-LANLNTLELFDNRL-------TTIPNGAFVYLSKLKELWLRNNPIE-S 150
Query: 144 IPS-WICNLSSLYVLDLSDNN----LSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198
IPS + SL LDL + +S + L N L L+L N
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN----LRYLNLAMCNL--REIPNLT 204
Query: 199 NGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI----NDTFPIWLGSLLELN 252
L +DLS N L P S L+ + +QI + F L SL+E+N
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEIN 261
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
I + + L N+ S +L+ L++L L+ N+++ L NL +L+L
Sbjct: 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 386 NRLTFLE 392
NRLT +
Sbjct: 122 NRLTTIP 128
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 36/175 (20%)
Query: 27 LDRLQRLSDFSG----QIPPSL-GNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTF 80
L +L+ L IP + L+ LDL L + LS+L L+
Sbjct: 135 LSKLKEL-WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN-- 191
Query: 81 PPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYL 134
+ IP + L+LS N+ + + + ++
Sbjct: 192 ----LAMCNLREIPNL---TPLIKLDELDLSGNHL-------SAIRPGSFQGLMHLQKLW 237
Query: 135 ISKNNLTGEIPSWICNLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQG 186
+ ++ + + NL SL ++L+ NNL+ +L L + L + L
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH----LERIHLHH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 15/63 (23%), Positives = 22/63 (34%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
L+ + LS N + L L L L N L L+ L+ L L N +
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 390 FLE 392
+
Sbjct: 150 SIP 152
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS-CLGSLTNLESLDLSKNRL 388
LK + L +N + + + L+ L L +I L+NL L+L+ L
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Query: 389 TFLEFFNATHN----NLTGPIPQANQFPTFGYSSFNGNSRL 425
+ +L+G N SF G L
Sbjct: 198 REIPNLTPLIKLDELDLSG-----NHLSAIRPGSFQGLMHL 233
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 27/238 (11%)
Query: 27 LDRLQRLSDFSGQIP--PSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK 84
LD + LS F + + LN L L+L N + +L + +L+ + L+
Sbjct: 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELE------ 91
Query: 85 IHGNIPKWLLNPS-MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGE 143
+ GN K + + +++ L+L+ T + + ++ + N +T
Sbjct: 92 LSGNPLKNVSAIAGLQSIKTLDLTSTQI-------TDVTPLAGLSNLQVLYLDLNQIT-N 143
Query: 144 IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203
I + L++L L + + +S L L N S L+ L + + +L
Sbjct: 144 ISP-LAGLTNLQYLSIGNAQVSD--LTPLANLSK-LTTLKADDNKI--SDISPLASLPNL 197
Query: 204 RMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLP 261
V L +N + P LAN + L I L N I + + +L+ N++ P
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 50/202 (24%)
Query: 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFS 102
+ +N L ++ LA N + L+ +E N
Sbjct: 39 TEAQMNSLTYITLANIN--------VTDLTGIE---------------------YAHNIK 69
Query: 103 YLNLSKNYFPRFDQHPTVLPWTTLS-----TKIRHYLISKNNLTGEIPSWICNLSSLYVL 157
L ++ + T + + + I ++T + + L+SL +L
Sbjct: 70 DLTINNIHA------------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117
Query: 158 DLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI 217
D+S + +L + ++ + L N T +L+ +++ + +
Sbjct: 118 DISHSAHDDSILTKINTLP-KVNSIDLSY-NGAITDIMPLKTLPELKSLNIQFDGVHDYR 175
Query: 218 PKSLANCAVLEISDLRNNQIND 239
+ + L + I
Sbjct: 176 G--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-- 387
L+ + + + +++ L L +L ++ + I + + +L + S+DLS N
Sbjct: 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 388 --------LTFLEFFNATHNNLT 402
L L+ N + +
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-- 387
L + +S + D + T I L + + L+ N I L +L L+SL++ +
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172
Query: 388 -------LTFLEFFNATHNNLTG 403
L A + G
Sbjct: 173 DYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 115 DQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGN 174
Q +P +T + L + T I ++SL + L++ N++ L +
Sbjct: 11 SQDNVNIPDSTFKAYLNGLL--GQSSTANIT--EAQMNSLTYITLANINVTD--LTGIEY 64
Query: 175 FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234
+ L++ + T + S+L + + + +L+ L + D+ +
Sbjct: 65 AHN-IKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 235 NQINDTFPIWLGSLLELNILVL 256
+ +D+ + +L ++N + L
Sbjct: 122 SAHDDSILTKINTLPKVNSIDL 143
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 17/127 (13%)
Query: 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN-IPKWLLNP--SMKN 100
+ L+ L+ L + + + ++ L+SL LD I + +L ++
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD------ISHSAHDDSILTKINTLPK 137
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS 160
+ ++LS N ++P TL +++ I + + I + L L
Sbjct: 138 VNSIDLSYN-----GAITDIMPLKTL-PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189
Query: 161 DNNLSGE 167
+ G+
Sbjct: 190 SQTIGGK 196
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 58/371 (15%), Positives = 117/371 (31%), Gaps = 66/371 (17%)
Query: 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFS 102
L L +L N L L + L+ L L+ N L +
Sbjct: 80 DLSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLN------CDTNKLTKLDVSQNPLLT 130
Query: 103 YLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN 162
YLN ++N T + + T++ N ++ + + L LD S N
Sbjct: 131 YLNCARNTL-------TEIDVSHN-TQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180
Query: 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLA 222
++ + L+ L+ N T D L +D S N L +I +
Sbjct: 181 KITELDVSQNKL----LNRLNCDTNNI--TKLD-LNQNIQLTFLDCSSNKLT-EID--VT 230
Query: 223 NCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLP-CFMGKLPSKYFQCWNA 277
L D N + + + + +L +L L + ++ +L +
Sbjct: 231 PLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287
Query: 278 MKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSS 337
+K + + + IT + Q L + L++
Sbjct: 288 IKELDVTHNTQLYLLDCQA-----------A--GITELDLSQNPK-------LVYLYLNN 327
Query: 338 NRFDGEMPTSI--ANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFN 395
T + ++ L+ L + ++Q S +G + L + ++ + +
Sbjct: 328 TEL-----TELDVSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKET 380
Query: 396 ATHNNLTGPIP 406
T+N+LT +
Sbjct: 381 LTNNSLTIAVS 391
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 65/397 (16%), Positives = 112/397 (28%), Gaps = 64/397 (16%)
Query: 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFS 102
S L L LD ++ + ++ I L+ L +L N L N +
Sbjct: 37 SEEQLATLTSLDCHNSS-ITDMTG-IEKLTGLTKLI------CTSNNITTLDLSQNTNLT 88
Query: 103 YLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN 162
YL N T L T L TK+ + N LT ++ + L L+ + N
Sbjct: 89 YLACDSNKL-------TNLDVTPL-TKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARN 137
Query: 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLA 222
L+ + L+ L T + L +D S N + ++
Sbjct: 138 TLTEIDVSHNTQ----LTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE---LDVS 188
Query: 223 NCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPS-KYFQCWN- 276
+L + N I + L ++L L + ++ + L YF C
Sbjct: 189 QNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN 243
Query: 277 ------AMKFANSSQLRYMENFLSS--YFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPD 328
+ + L ++ L YF + T
Sbjct: 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ----- 298
Query: 329 ILKGIILSSNRFDGEMPTSI--ANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386
L + + T + + L L L + L + + T L+SL
Sbjct: 299 -LYLLDCQAAGI-----TELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNA 349
Query: 387 RLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNS 423
+ L Q T + NS
Sbjct: 350 HIQDFSSVG-KIPALNNNFEAEGQTITMPKETLTNNS 385
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 43/280 (15%), Positives = 80/280 (28%), Gaps = 62/280 (22%)
Query: 131 RHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190
+ + + L++L LD +++++ + + +G L+ L N
Sbjct: 21 ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTG-LTKLICTSNNI- 76
Query: 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLE 250
TT D N + L + N L + + L + N++ L
Sbjct: 77 -TTLDLSQNTN-LTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131
Query: 251 LNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDY 310
LN N + + S +
Sbjct: 132 LNCA--------------------RNTLTEIDVSHNTQLTELDCHLNK------------ 159
Query: 311 SITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS 370
+ T L + S N+ ++ K L L +NN+ +
Sbjct: 160 -KITKLDVTPQTQ------LTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD- 207
Query: 371 CLGSLTNLESLDLSKNRLTFLEF--------FNATHNNLT 402
L L LD S N+LT ++ F+ + N LT
Sbjct: 208 -LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT 246
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 324 DKIPDI-LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382
D PD + ++ S L L L ++++ + + LT L L
Sbjct: 13 DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLI 70
Query: 383 LSKNRLTFLEFFNATH 398
+ N +T L+ T+
Sbjct: 71 CTSNNITTLDLSQNTN 86
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 7e-08
Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 32/293 (10%)
Query: 42 PSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN-IPKWLLNPSMKN 100
+ LN + + N+ ++ + I L ++ +L ++GN + ++KN
Sbjct: 37 VTQNELNSIDQIIA-NNSDIKSVQG-IQYLPNVTKLF------LNGNKLTDIKPLTNLKN 88
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS 160
+L L +N L K++ + N ++ +I + +L L L L
Sbjct: 89 LGWLFLDENKIKDLS------SLKDL-KKLKSLSLEHNGIS-DING-LVHLPQLESLYLG 139
Query: 161 DNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS 220
+N ++ + L + L LSL+ + + L+ + LS N + ++
Sbjct: 140 NNKITD--ITVLSRLTK-LDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHI--SDLRA 192
Query: 221 LANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKL-------PSKYFQ 273
LA L++ +L + + + +L+ N + +
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252
Query: 274 CWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKI 326
S + F P + + + K+
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKV 305
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-05
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-- 387
LK + L N + +L L+ L L +N + + L LT L++L L N+
Sbjct: 111 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166
Query: 388 -------LTFLEFFNATHNNLT 402
LT L+ + N+++
Sbjct: 167 DIVPLAGLTKLQNLYLSKNHIS 188
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
L+ + L +N+ T ++ L L L L N + I L LT L++L LSKN ++
Sbjct: 133 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 188
Query: 390 FLEFFNATHNNLT 402
L A NL
Sbjct: 189 DLRAL-AGLKNLD 200
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 39/206 (18%), Positives = 60/206 (29%), Gaps = 45/206 (21%)
Query: 39 QIPP-SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPS 97
+P S L L L N L + A + + L L
Sbjct: 46 HVPAASFRACRNLTILWLHSNV-LARIDA--AAFTGLALL-------------------- 82
Query: 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLISKNNLTGEIPS-WICNLSSL 154
L+LS N + T ++ + + L E+ L++L
Sbjct: 83 ----EQLDLSDN------AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAAL 131
Query: 155 YVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHN 211
L L DN L + + LGN L+ L L G F L + L N
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGN----LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 212 LLQGKIPKSLANCAVLEISDLRNNQI 237
+ P + + L L N +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNL 213
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 39/202 (19%), Positives = 59/202 (29%), Gaps = 32/202 (15%)
Query: 27 LDRLQRLSDFSGQI----PPSLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFP 81
L L S + + L L+ LDL+ N LR + + L L L
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH--- 111
Query: 82 PMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS--TKIRHYLI 135
+ + L + YL L N LP T + H +
Sbjct: 112 ---LDRCGLQELGPGLFR-GLAALQYLYLQDNAL-------QALPDDTFRDLGNLTHLFL 160
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLS---GELLQCLGNFSGGLSVLSLQGKNFFGT 192
N ++ L SL L L N ++ + LG L L L N
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR----LMTLYLFANNLSAL 216
Query: 193 TPDTFMNGSDLRMVDLSHNLLQ 214
+ L+ + L+ N
Sbjct: 217 PTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 49/259 (18%), Positives = 77/259 (29%), Gaps = 50/259 (19%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
+ L +P I ++ + L N +S L++L L
Sbjct: 19 PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLARIDAA 74
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKS-LANCAVLEISDLRNNQINDTFPIWLGSLLELNIL 254
F + L +DLS N + + L L + + P L L L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 255 VL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQ 307
L +Q LP F + L ++ N +SS F
Sbjct: 135 YLQDNALQALP---------------DDTFRDLGNLTHLFLHGNRISSVPERAFRG---- 175
Query: 308 NDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367
+ + L ++L NR P + +L L L L +NNL
Sbjct: 176 ------LHS-------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 368 IPSCLGSLTNLESLDLSKN 386
L L L+ L L+ N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 45/226 (19%), Positives = 68/226 (30%), Gaps = 46/226 (20%)
Query: 174 NFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL- 232
+ L G +F +L ++ L N+L + A+LE DL
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 233 RNNQINDTFPIWLGSLLELNILVL----IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288
N Q+ P L L+ L L +Q+L F + L+Y
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG---------------PGLFRGLAALQY 133
Query: 289 M---ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMP 345
+ +N L + F + N L + L NR
Sbjct: 134 LYLQDNALQALPDDTFRD----------LGN-------------LTHLFLHGNRISSVPE 170
Query: 346 TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFL 391
+ L L L L N + P L L +L L N L+ L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
IP + I L NR S + L +L L SN L + L LE LDLS
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 386 N-RLTFLE 392
N +L ++
Sbjct: 90 NAQLRSVD 97
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 8e-07
Identities = 42/293 (14%), Positives = 90/293 (30%), Gaps = 32/293 (10%)
Query: 100 NFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDL 159
+ + D+ P + W T + R + +L + + V+
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323
Query: 160 SDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPK 219
++ +L + + L +LS +
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDE----------------QLFRCELSVEKST-VLQS 366
Query: 220 SLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMK 279
L +C L+ + N T + + L+ L+ ++ + L + +
Sbjct: 367 ELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423
Query: 280 FANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNR 339
S L + R +T+ + + + + LS NR
Sbjct: 424 DLRSKFLLENS---VLKMEYADVRVLHLAHKDLTVLCHLEQLLL------VTHLDLSHNR 474
Query: 340 FDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392
+P ++A L+ L+VL + N L+ ++ + +L L+ L L NRL
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSA 524
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-06
Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 23/194 (11%)
Query: 218 PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNA 277
+ A L +L + L S EL L + L +
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALD---- 396
Query: 278 MKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSS 337
L+Y + Y ++ + + S ++ + L+
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV------LHLAH 450
Query: 338 NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR---------L 388
+ + L + L L+ N L+ +P L +L LE L S N L
Sbjct: 451 KDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANL 507
Query: 389 TFLEFFNATHNNLT 402
L+ +N L
Sbjct: 508 PRLQELLLCNNRLQ 521
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 19/210 (9%)
Query: 41 PPSLGNLNQLQWLDLAFN--NFLRELPASIGSLSSLERLDTFPPMKIHGNIPK----WLL 94
QL +L+ L+ S L LE + + + I +
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401
Query: 95 NPSMKNFSYL------NLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWI 148
+++ FS L + R +R ++ +LT + +
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-L 459
Query: 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208
L + LDLS N L L L L VL N D N L+ + L
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRC-LEVLQASD-NAL-ENVDGVANLPRLQELLL 515
Query: 209 SHNLLQG-KIPKSLANCAVLEISDLRNNQI 237
+N LQ + L +C L + +L+ N +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 51/264 (19%), Positives = 90/264 (34%), Gaps = 34/264 (12%)
Query: 46 NLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKN 100
NL +L + + N L + +L +L+ L I +P S++
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL------ISNTGIKHLPDVHKIHSLQK 130
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTT---LSTKIRHYLISKNNLTGEIPSWICNLSSLYVL 157
L++ N + + + LS + ++KN + EI + N + L L
Sbjct: 131 V-LLDIQDN------INIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182
Query: 158 DLSDNNLSGELLQCLGN--FSG--GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLL 213
+LSDNN L+ L N F G G +L + N LR +
Sbjct: 183 NLSDNNN----LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL-- 236
Query: 214 QGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQ 273
K+P +L L + L F W + EL+ + L + + Q
Sbjct: 237 -KKLP-TLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQ 294
Query: 274 CWNAMKFANSSQLRYMENFLSSYF 297
+ + SS R + + +
Sbjct: 295 RSSLAEDNESSYSRGFDMTYTEFD 318
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 17/220 (7%)
Query: 40 IPP-SLGNLNQLQWLDLAFNNFLRELPASI-GSLSSLERLDTFPPMKIHGNIPKWLLNPS 97
I + L+ ++++ N+ L + A + +L L + + I +
Sbjct: 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQ-N 102
Query: 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL--STKIRHYLISKNNLTGEIPS-WICNLSS- 153
+ N YL +S LP S + I N I LS
Sbjct: 103 LPNLQYLLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155
Query: 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLL 213
+L L+ N + E+ N + + N D F S ++D+S +
Sbjct: 156 SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214
Query: 214 QGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
L N L N + T L +L+E ++
Sbjct: 215 HSLPSYGLENLKKLRARSTYNLKKLPTLEK-LVALMEASL 253
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 49/253 (19%)
Query: 150 NLSSLYVLDLSDNNLSG---ELLQCLGNFSGGLSVLSLQGKNFFGTTPD--TFMNGSDLR 204
+L SL LDLS N LS + L + L+ L+L G N + T + F + + L+
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSS----LTFLNLLG-NPYKTLGETSLFSHLTKLQ 152
Query: 205 MVDLSHNLLQGKIP-KSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL----IQQ 259
++ + + KI K A LE ++ + + P L S+ ++ L+L
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212
Query: 260 LPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDFYRYFPQNDYSITMSN 316
L + +S + +E L + F ++ S +N
Sbjct: 213 LL---------------EIFVDVTSSVECLELRDTDLDT---------FHFSELSTGETN 248
Query: 317 EGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLT 376
+ + ++ ++ + + GL L + N L+ LT
Sbjct: 249 SLIKKFT------FRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301
Query: 377 NLESLDLSKNRLT 389
+L+ + L N
Sbjct: 302 SLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 54/283 (19%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSG--GLSVLSLQGKNFFGTT 193
S +L IPS + ++ LDLS+N ++ + + L L L
Sbjct: 39 SSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISN--SDLQRCVNLQALVLTSNGINTIE 92
Query: 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN----DTFPIWLGSLL 249
D+F + L +DLS+N L + L +L N + L L
Sbjct: 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152
Query: 250 ELNIL--VLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME---NFLSSYFSFDF--- 301
L + ++ FA + L +E + L SY
Sbjct: 153 ILRVGNMDTFTKIQ---------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 302 ----YRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSI--------A 349
+ + + + + + ++ + L D + +
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSS------VECLELRDTDLDTFHFSELSTGETNSLI 251
Query: 350 NLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392
+ + + +L + L ++ L L+ S+N+L +
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVP 293
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 35/263 (13%), Positives = 77/263 (29%), Gaps = 46/263 (17%)
Query: 3 RCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQI----PPSLGNLNQLQWLDLAFN 58
C C + + + Q L + + NL + + ++ +
Sbjct: 7 PCECHQEEDFRVTCKDI-QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65
Query: 59 NFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118
L++L + S +L ++ +++ + ++
Sbjct: 66 VTLQQLES--HSFYNLSKV------------------------THIEIRNT------RNL 93
Query: 119 TVLPWTTLS--TKIRHYLISKNNLTGEIP--SWICNLSSLYVLDLSDNNLSGEL-LQCLG 173
T + L ++ I L P + + + ++L+++DN + +
Sbjct: 94 TYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152
Query: 174 NFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPK-SLAN-CAVLEISD 231
L L F F NG+ L V L+ N I K + + + D
Sbjct: 153 GLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211
Query: 232 LRNNQINDTFPIWLGSLLELNIL 254
+ + L L EL
Sbjct: 212 VSQTSVTALPSKGLEHLKELIAR 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 36/217 (16%), Positives = 85/217 (39%), Gaps = 25/217 (11%)
Query: 42 PSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN-IPKWLLNPSMKN 100
+ LN + + ++ ++ + I L ++ +L ++GN + ++KN
Sbjct: 40 VTQNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLF------LNGNKLTDIKPLANLKN 91
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS 160
+L L +N L K++ + N ++ +I + +L L L L
Sbjct: 92 LGWLFLDENKVKDLS------SLKDL-KKLKSLSLEHNGIS-DING-LVHLPQLESLYLG 142
Query: 161 DNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS 220
+N ++ + L + L LSL+ + + L+ + LS N + + ++
Sbjct: 143 NNKITD--ITVLSRLTK-LDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DL-RA 195
Query: 221 LANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI 257
LA L++ +L + + + +L+ N +
Sbjct: 196 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
LK + L N + +L L+ L L +N + + L LT L++L L N+++
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 169
Query: 390 FLEFFNATHNNLT 402
+ A L
Sbjct: 170 DIVPL-AGLTKLQ 181
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 8e-05
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS-CLGSLTNLESLDLSKNRLTF----- 390
+ + + + L L + + H+ L L L +L + K+ L F
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 391 ------LEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLC 426
L N + N L + Q + +GN C
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 7e-04
Identities = 21/116 (18%), Positives = 30/116 (25%), Gaps = 25/116 (21%)
Query: 40 IPPSLGNLNQLQWLDLAFNNFLRELPA-SIGSLSSLERLDTFPPMKIHGN----IPKWLL 94
L L L + L+ L + L L L I + +
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT------IVKSGLRFVAPDAF 76
Query: 95 NPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICN 150
+ S LNLS N L W T+ L+ N C+
Sbjct: 77 H-FTPRLSRLNLSFN-------ALESLSWKTVQGLSLQELVLSGN------PLHCS 118
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 2e-04
Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 330 LKGIILSSNRFDGEMPTSIAN---LKGLQVLGLASNNLQG----HIPSCLGSLTNLESLD 382
LK + + + L L+ + +++ L + + + +L+ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313
Query: 383 LSKNRLT 389
+ N L+
Sbjct: 314 MKYNYLS 320
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSG-ELLQCLGNFSGGLSVLSLQGKNFFGTTP 194
+ ++ + + L + L LS NN+ L + N L +LSL N
Sbjct: 33 MIPPIE-KMDATLSTLKACKHLALSTNNIEKISSLSGMEN----LRILSLGR-NLIKKIE 86
Query: 195 DTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW-LGSLLELNI 253
+ L + +S+N + + + L + + NN+I + I L +L +L
Sbjct: 87 NLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
Query: 254 LVL 256
L+L
Sbjct: 145 LLL 147
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLT 402
+M +++ LK + L L++NN++ I S L + NL L L +N + +E +A + L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLE 96
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 33/172 (19%), Positives = 50/172 (29%), Gaps = 23/172 (13%)
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGE----IPSWICNLSSL 154
+ L++ L + + + LT I S + +L
Sbjct: 3 LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58
Query: 155 YVLDLSDNNLSGE----LLQCLGNFSGGLSVLSLQGKNFFGTT-----PDTFMNGSDLRM 205
L+L N L +LQ L S + LSLQ T L+
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLTGAGCGVLSSTLRTLPTLQE 117
Query: 206 VDLSHNLLQGKIPKSLA-----NCAVLEISDLRNNQINDTFPIWLGSLLELN 252
+ LS NLL + L LE L ++ L S+L
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 330 LKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389
L + LS N+ +P L L VL ++ N L L L L+ L L N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 390 FL 391
L
Sbjct: 138 TL 139
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
+P+ + I L N P + + K L+ + L++N + P L +L SL L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 386 NRLTFL 391
N++T L
Sbjct: 90 NKITEL 95
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 49/291 (16%), Positives = 80/291 (27%), Gaps = 80/291 (27%)
Query: 135 ISKNNLTGE----IPSWICNLSSLYVLDLSDNNLSGELLQCLGNF---SGGLSVLSLQGK 187
+ + +T E + + + S+ + LS N + E + L L +
Sbjct: 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD- 69
Query: 188 NFFGTTPDTFMNGSD-----------LRMVDLSHNLLQGK----IPKSLANCAVLEISDL 232
F G D L V LS N + L+ LE L
Sbjct: 70 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129
Query: 233 RNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENF 292
NN + + L+ + K N+ LR
Sbjct: 130 HNNGLGPQAGAKIARALQ----------------------ELAVNKKAKNAPPLR----- 162
Query: 293 LSSYFSFDFYRYFPQNDYSITMSNEG-----QMMTHDKIPDILKGIILSSNRFDGE---- 343
S R N + N + + +L + + N E
Sbjct: 163 -----SIICGR----NR----LENGSMKEWAKTFQSHR---LLHTVKMVQNGIRPEGIEH 206
Query: 344 -MPTSIANLKGLQVLGLASNNL--QG--HIPSCLGSLTNLESLDLSKNRLT 389
+ +A + L+VL L N G + L S NL L L+ L+
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 326 IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385
+P K + LS N S + LQVL L+ +Q SL++L +L L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 386 NRLTFL 391
N + L
Sbjct: 86 NPIQSL 91
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.84 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.84 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.83 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.82 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.8 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.77 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.77 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.74 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.73 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.63 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.6 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.58 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.56 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.56 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.54 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.48 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.46 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.42 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.42 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.42 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.34 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.32 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.28 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.27 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.24 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.15 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.97 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.78 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.78 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.78 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.52 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.45 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.38 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.33 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.83 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.79 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.45 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.16 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.08 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.95 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-50 Score=427.89 Aligned_cols=425 Identities=30% Similarity=0.448 Sum_probs=326.5
Q ss_pred ccccCcccceeeeehhccC----CChhhhhhc-cCCcccccCCcCCCCC-CCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 4 CLCSELTRLTILLFYLMTS----DSPFLDRLQ-RLSDFSGQIPPSLGNL-NQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~----~~~~l~~L~-~~n~~~~~~p~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
..|.+|++++++.+.+... ..+.++.|+ ++|.+++.+|..+... ++|++|++++|++.+.+|..|+.+++|++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 3455666666665553322 224455555 6677777777777664 788888888888777778888888888888
Q ss_pred ccCCCCcccccCCch-hccccCCCCcEEEccCCCCC-CCCC-C---C-CC-------------CCcccc---cCccCeee
Q 048443 78 DTFPPMKIHGNIPKW-LLNPSMKNFSYLNLSKNYFP-RFDQ-H---P-TV-------------LPWTTL---STKIRHYL 134 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~-~~~~~l~~L~~L~Ls~N~l~-~~~~-l---~-~l-------------~p~~~~---~~~L~~L~ 134 (486)
+++ +|.+.+.+|.. +.. +++|++|++++|.++ .+|. + . .+ +|..+. +++|++|+
T Consensus 324 ~L~-~n~l~~~ip~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 324 ALS-SNNFSGELPMDTLLK--MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp ECC-SSEEEEECCHHHHTT--CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred ECC-CCcccCcCCHHHHhc--CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 888 78877777765 666 778888888887775 3332 1 0 11 222222 46788888
Q ss_pred cccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccc
Q 048443 135 ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 135 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
+++|++++.+|..+..+++|++|++++|.+++..|..+..++. |+.|++++|.+.+.+|..+..+++|++|++++|.++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 8888888888888889999999999999998888888988887 999999999999888988999999999999999999
Q ss_pred cccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccc
Q 048443 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLS 294 (486)
Q Consensus 215 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~ 294 (486)
+.+|.++..+++|++|++++|++.+..|.+++.+++|+.|++++|. +.+.+|.. +..+++|+.+++++|........
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--FSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEEECCGG-GGGCTTCCEEECCSSEEESBCCG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc--ccCcCCHH-HcCCCCCCEEECCCCccCCcCCh
Confidence 8889999999999999999999998999999999999999999985 66777766 78889999999998854422222
Q ss_pred cccccccccc--CCCCcc-------------------------------------eEEeecCCCcc---ccCcccCcccE
Q 048443 295 SYFSFDFYRY--FPQNDY-------------------------------------SITMSNEGQMM---THDKIPDILKG 332 (486)
Q Consensus 295 ~~~~~~~~~~--~~~~~~-------------------------------------~l~~~~~~~~~---~~~~~~~~L~~ 332 (486)
.......... +..... .+++..+.... .....++.|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 1111000000 000000 00000011111 11223578999
Q ss_pred EEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCcc
Q 048443 333 IILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNL 401 (486)
Q Consensus 333 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l 401 (486)
||+++|++++.+|..++.+++|+.|+|++|+++|.+|..|+++++|++|||++|+ +++|++||+++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999 66899999999999
Q ss_pred ccCCCCCCCCCCCCCccccCCcCCCCCCCCCCCCC
Q 048443 402 TGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECAS 436 (486)
Q Consensus 402 ~~~~p~~~~~~~~~~~~~~~np~~c~~~~~~~C~~ 436 (486)
+|.+|.+.+|.++...+|.|||.+||.|.. .|..
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence 999999999999999999999999999987 8976
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=395.97 Aligned_cols=412 Identities=19% Similarity=0.203 Sum_probs=301.6
Q ss_pred ccCcccceeeeehhccC---C---Chhhhhhc-cCCcccccC-CcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 6 CSELTRLTILLFYLMTS---D---SPFLDRLQ-RLSDFSGQI-PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~~---~---~~~l~~L~-~~n~~~~~~-p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
.+.++.++++.+.+... . .+.|+.|+ ++|...+.+ |.+|+++++|++|+|++|++.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35677888887764322 2 23444554 556566666 6778888888888888888877778888888888888
Q ss_pred ccCCCCcccccCCch--hccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccc------
Q 048443 78 DTFPPMKIHGNIPKW--LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWI------ 148 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~--~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~------ 148 (486)
+|+ +|.+++..|.. +.. +++|++|+|++|.++.++ .+..+. +++|++|++++|.+++..+..+
T Consensus 103 ~Ls-~n~l~~~~~~~~~~~~--L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 103 RLY-FCGLSDAVLKDGYFRN--LKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp ECT-TCCCSSCCSTTCCCSS--CSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred eCc-CCCCCcccccCccccc--cCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 888 78887755554 666 888888888888777652 122333 5666666666665554444333
Q ss_pred --------------------cCCCC------CCEEECcCCcCcccccchhhhc---------------------------
Q 048443 149 --------------------CNLSS------LYVLDLSDNNLSGELLQCLGNF--------------------------- 175 (486)
Q Consensus 149 --------------------~~l~~------L~~L~Ls~N~i~~~~~~~l~~~--------------------------- 175 (486)
..+++ |+.|++++|.+++..+..+...
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 33333 7788888777665554444321
Q ss_pred ----------CCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccc
Q 048443 176 ----------SGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWL 245 (486)
Q Consensus 176 ----------~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 245 (486)
..+|+.|++++|.+.+..+..|..+++|+.|++++|.+++..|.+|..+++|++|++++|.+.+..|..|
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 1238899999999988888889999999999999999998888889999999999999999988888899
Q ss_pred cCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcc-----cccccccccccccc----------------
Q 048443 246 GSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME-----NFLSSYFSFDFYRY---------------- 304 (486)
Q Consensus 246 ~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~-----~~~~~~~~~~~~~~---------------- 304 (486)
..+++|+.|++++| .+..++...|..+++|+.+++++|.... ......+..+.+..
T Consensus 335 ~~l~~L~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 335 YGLPKVAYIDLQKN---HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411 (844)
T ss_dssp SSCTTCCEEECCSC---CCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred cCCCCCCEEECCCC---CCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccC
Confidence 99999999999998 5677777778889999999988874321 01111111111111
Q ss_pred ------------CCCCcceEEeecCCCcccc----CcccCcccEEEccccccc-----ccCccchhccCCCCeeeCCCcc
Q 048443 305 ------------FPQNDYSITMSNEGQMMTH----DKIPDILKGIILSSNRFD-----GEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 305 ------------~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
--+.+..++++++.+.... ...+++|+.|++++|.++ +..+..|..+++|++|+|++|+
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 1245666777777665322 223577888888888876 3445668899999999999999
Q ss_pred cCccCchhccCCCCCCEEeCCCCCC---------CCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCCC
Q 048443 364 LQGHIPSCLGSLTNLESLDLSKNRL---------TFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPL 430 (486)
Q Consensus 364 l~~~~~~~~~~l~~L~~L~Ls~N~l---------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~~ 430 (486)
+++.+|..|.++++|++|+|++|++ ++|+.|++++|++++..|.. +..+..+++.+||+.|+|+.
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 9999999999999999999999995 47899999999999988864 66888899999999998764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=368.45 Aligned_cols=421 Identities=17% Similarity=0.148 Sum_probs=262.2
Q ss_pred CCcccccCcccceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
+..|.|........|..... ...++.++.|+ ++|.+++..|.+|+++++|++|+|++|++.+..|.+|.++++|+
T Consensus 5 ~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (606)
T 3t6q_A 5 DQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84 (606)
T ss_dssp -CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccC
Confidence 35688865554444443322 33455677787 88889888888999999999999999999888899999999999
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCC--CCCC-----------------CCcccccCccCeeecc
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ--HPTV-----------------LPWTTLSTKIRHYLIS 136 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-----------------~p~~~~~~~L~~L~Ls 136 (486)
+|+++ +|.+++..|..+.. +++|++|++++|.++.++. +..+ .|..+.+++|++|+++
T Consensus 85 ~L~Ls-~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 85 TLVLT-ANPLIFMAETALSG--PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp EEECT-TCCCSEECTTTTSS--CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred eeeCC-CCcccccChhhhcc--cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 99999 99999888888888 9999999999998887522 1100 1222224445555555
Q ss_pred cCcccccCCccccCCCCCC--EEECcCCcCcccccchhhhc---------------------------------------
Q 048443 137 KNNLTGEIPSWICNLSSLY--VLDLSDNNLSGELLQCLGNF--------------------------------------- 175 (486)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~--~L~Ls~N~i~~~~~~~l~~~--------------------------------------- 175 (486)
+|.+++..+..|..+++|+ .|++++|.+++..|..+...
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred cCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 5555444444445555555 45555555443333222110
Q ss_pred ----------C-CCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCcc
Q 048443 176 ----------S-GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW 244 (486)
Q Consensus 176 ----------~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 244 (486)
. .+|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh
Confidence 0 01444555555555555555777788888888888887 67777888888888888888887777777
Q ss_pred ccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccc--c----------cccccccccc-----cC--
Q 048443 245 LGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENF--L----------SSYFSFDFYR-----YF-- 305 (486)
Q Consensus 245 ~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~--~----------~~~~~~~~~~-----~~-- 305 (486)
+..+++|+.|++++|. ..+.+|...+..+++|+.++++++...... . ...+..+... .+
T Consensus 321 ~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNT--KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GGGCTTCSEEECCSCS--SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhccCcCCEEECCCCC--cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 7778888888887764 445666666666666666666655332111 0 0000111000 00
Q ss_pred C-------------------------CCcceEEeecCCCccccC---cccCcccEEEccccccccc---CccchhccCCC
Q 048443 306 P-------------------------QNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFDGE---MPTSIANLKGL 354 (486)
Q Consensus 306 ~-------------------------~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~~---~~~~~~~l~~L 354 (486)
. +.+..++++++.+....+ ..+++|+.|++++|.+++. .+..+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 1 234444444444433221 2245566666666665541 22345666666
Q ss_pred CeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCC
Q 048443 355 QVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGN 422 (486)
Q Consensus 355 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n 422 (486)
++|++++|++++..|..|..+++|++|++++|+ ++.| +|++++|++++..|.. ..+..+..+++.+|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 666666666666666666666777777777766 3455 6777777777655543 33456677888999
Q ss_pred cCCCCC
Q 048443 423 SRLCGK 428 (486)
Q Consensus 423 p~~c~~ 428 (486)
|+.|+|
T Consensus 558 ~~~c~c 563 (606)
T 3t6q_A 558 PLDCTC 563 (606)
T ss_dssp CEECSG
T ss_pred CccccC
Confidence 999963
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=378.39 Aligned_cols=404 Identities=28% Similarity=0.364 Sum_probs=266.2
Q ss_pred ccccCcccceeeeehhccCC-----Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 4 CLCSELTRLTILLFYLMTSD-----SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~~-----~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
..|.+|++++++.+.+.... .+.|+.|+ ++|.+++.+|..|+.+++|++|++++|++.+.+|.. .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 56788888888887754432 24455555 778888888888888888888888888887766654 67778888
Q ss_pred ccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc-ccCCCCCC
Q 048443 78 DTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW-ICNLSSLY 155 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 155 (486)
+++ +|.+++.+|..+... +++|++|++++|.++.. +|..+. +++|++|++++|++++.+|.. +..+++|+
T Consensus 275 ~L~-~n~l~~~ip~~~~~~-~~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 275 SLA-ENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYGA------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp ECC-SSEEEESCCCCSCTT-CTTCSEEECCSSEEEEC------CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ECc-CCccCCccCHHHHhh-cCcCCEEECcCCcCCCc------cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 887 777777777777662 37788888888777644 455555 677777777777776666654 66777777
Q ss_pred EEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccC--CCCccEEECcCCccccccCccCcCCCCCCEEEcc
Q 048443 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMN--GSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 233 (486)
+|++++|++++.+|..+..+..+|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 77777777766666666666522666666666555554444443 4445555555555554455555555555555555
Q ss_pred CCccccCCCccccCCCCCCEEEcCccCCCccccCChh-----------------------hhhccccccccccccchhcc
Q 048443 234 NNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK-----------------------YFQCWNAMKFANSSQLRYME 290 (486)
Q Consensus 234 ~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~-----------------------~~~~l~~L~~l~~~~~~~~~ 290 (486)
+|.+.+..|..+..+++|+.|++++|. +.+.+|.. .+..+++|+.+++++|....
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNM--LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCc--ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 555554445555555555555554442 33333332 14444445555544442211
Q ss_pred ccccccccccccccCCCCcceEEeecCCCccccCc---ccCcccEEEcccccccccCccch-------------------
Q 048443 291 NFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK---IPDILKGIILSSNRFDGEMPTSI------------------- 348 (486)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~------------------- 348 (486)
.....+ . --+.+..++++++.+....+. .+++|+.|++++|.+++.+|..+
T Consensus 505 ~~p~~~------~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 505 EIPKWI------G-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CCCGGG------G-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCChHH------h-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 111000 0 114567788888877654433 36778888888888876666543
Q ss_pred ---------------------------------------------------hccCCCCeeeCCCcccCccCchhccCCCC
Q 048443 349 ---------------------------------------------------ANLKGLQVLGLASNNLQGHIPSCLGSLTN 377 (486)
Q Consensus 349 ---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 377 (486)
..+++|++|+|++|+++|.+|..|+.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 33567889999999999999999999999
Q ss_pred CCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCCcCCC
Q 048443 378 LESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 378 L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~np~~c 426 (486)
|+.|+|++|+ +++|++||+++|+++|.+|.. ..+..+..+++.+|+...
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 9999999998 568999999999999999976 456777888888887543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=355.89 Aligned_cols=392 Identities=17% Similarity=0.169 Sum_probs=277.6
Q ss_pred CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCC
Q 048443 22 SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100 (486)
Q Consensus 22 ~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~ 100 (486)
..++.++.|+ ++|.+++..|.+|+++++|++|++++|++.+..|.+|.++++|++|+++ +|.+++..|.+|.+ +++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~--l~~ 105 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSG--LTS 105 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTT--CTT
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCC--ccc
Confidence 3456778887 8899999888899999999999999999999989999999999999999 99999988999999 999
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCC
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGG 178 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~ 178 (486)
|++|++++|.++.++ +..+. +++|++|++++|.+++ .+|..|.++++|++|++++|++++..+..++.+..
T Consensus 106 L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~- 178 (606)
T 3vq2_A 106 LENLVAVETKLASLE------SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE- 178 (606)
T ss_dssp CCEEECTTSCCCCSS------SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH-
T ss_pred CCEEEccCCcccccc------ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc-
Confidence 999999999998874 23455 8999999999999986 56889999999999999999998777766665543
Q ss_pred Cc----EEEccCccccccCCcccc--------------------------------------------------------
Q 048443 179 LS----VLSLQGKNFFGTTPDTFM-------------------------------------------------------- 198 (486)
Q Consensus 179 L~----~L~L~~n~i~~~~~~~~~-------------------------------------------------------- 198 (486)
|+ +|++++|.+.+..+..+.
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 33 566666665544333322
Q ss_pred ----------------------------------------------CCCCccEEECcCCccccccCccCcCCCCCCEEEc
Q 048443 199 ----------------------------------------------NGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL 232 (486)
Q Consensus 199 ----------------------------------------------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 232 (486)
.+++|++|++++|.++ .+| .+ .+++|++|++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccc-cC-CCCccceeec
Confidence 2223333333333331 233 12 3333333333
Q ss_pred cCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccc---------ccccccccccc
Q 048443 233 RNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENF---------LSSYFSFDFYR 303 (486)
Q Consensus 233 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~---------~~~~~~~~~~~ 303 (486)
++|...+ +..+..+++|+.|++++|.-...+.+|. .+..+++|+.++++++...... ....+..+...
T Consensus 336 ~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 336 TMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp ESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEE
T ss_pred cCCcCcc--chhhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccC
Confidence 3332211 1134456677777777652111111233 2556666666666655321100 00011111110
Q ss_pred --------cCCCCcceEEeecCCCccccC---cccCcccEEEcccccccc-cCccchhccCCCCeeeCCCcccCccCchh
Q 048443 304 --------YFPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFDG-EMPTSIANLKGLQVLGLASNNLQGHIPSC 371 (486)
Q Consensus 304 --------~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 371 (486)
.-.+.+..++++.+.+....+ ..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 112467788888888766443 346889999999999987 47888999999999999999999888999
Q ss_pred ccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCC-CCCCccccCCcCCCCCCC
Q 048443 372 LGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFP-TFGYSSFNGNSRLCGKPL 430 (486)
Q Consensus 372 ~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~np~~c~~~~ 430 (486)
|..+++|++|++++|+ +++|++|++++|+++ .+|.. ..+. .+..+++.+||+.|+|+.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999998 568999999999998 45554 3343 478889999999997553
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=358.84 Aligned_cols=351 Identities=17% Similarity=0.227 Sum_probs=292.2
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCC-----------------Cccccc--CCCCCCeeccCCCCcccccCCchh
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRE-----------------LPASIG--SLSSLERLDTFPPMKIHGNIPKWL 93 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~-----------------~~~~~~--~l~~L~~L~L~~~n~i~~~~p~~~ 93 (486)
.|+++| +|++|+++++|++|+|++|++.+. +|..++ ++++|++|+++ +|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~-~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY-NCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-CCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec-CCcCCccChHHH
Confidence 578889 999999999999999999999886 899998 99999999999 999999999999
Q ss_pred ccccCCCCcEEEccCCC-CCC-CCCCCCCCCcccc-c------CccCeeecccCcccccCCc--cccCCCCCCEEECcCC
Q 048443 94 LNPSMKNFSYLNLSKNY-FPR-FDQHPTVLPWTTL-S------TKIRHYLISKNNLTGEIPS--WICNLSSLYVLDLSDN 162 (486)
Q Consensus 94 ~~~~l~~L~~L~Ls~N~-l~~-~~~l~~l~p~~~~-~------~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N 162 (486)
.+ +++|++|++++|+ ++. . +|..++ + ++|++|++++|+++ .+|. .+..+++|++|++++|
T Consensus 270 ~~--l~~L~~L~Ls~n~~l~~~~------lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 270 KA--LPEMQLINVACNRGISGEQ------LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp TT--CSSCCEEECTTCTTSCHHH------HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred hc--CCCCCEEECcCCCCCcccc------chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 99 9999999999998 874 2 444554 4 89999999999999 8888 8999999999999999
Q ss_pred cCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC-ccEEECcCCccccccCccCcCCC--CCCEEEccCCcccc
Q 048443 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD-LRMVDLSHNLLQGKIPKSLANCA--VLEISDLRNNQIND 239 (486)
Q Consensus 163 ~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~ 239 (486)
+++|.+| .+..++. |++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+
T Consensus 341 ~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 341 QLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 9998898 8888887 999999999998 77888999999 999999999999 7888887755 89999999999999
Q ss_pred CCCcccc-------CCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceE
Q 048443 240 TFPIWLG-------SLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSI 312 (486)
Q Consensus 240 ~~~~~~~-------~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (486)
..|..+. .+++|+.|++++| ....+|...+..+++|+.+++++|... ......... ..
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N---~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~-----~~------ 481 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNN---QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD-----EN------ 481 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSS---CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE-----TT------
T ss_pred cchhhhcccccccccCCCCCEEECcCC---ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc-----cc------
Confidence 9998888 8889999999998 566899999999999999999988432 111100000 00
Q ss_pred EeecCCCccccCcccCcccEEEcccccccccCccchh--ccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCC-----
Q 048443 313 TMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIA--NLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK----- 385 (486)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~----- 385 (486)
.....+++|+.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|++++
T Consensus 482 ---------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 482 ---------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp ---------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred ---------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 00011236888888888888 6777776 78888888888888885 777788888888888854
Q ss_pred -CC-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCC
Q 048443 386 -NR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 386 -N~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c 426 (486)
|+ +++|++|++++|++ +.+|.. .+..+..+++.+||+.|
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 33 56788888888888 567765 33677888888888887
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=353.58 Aligned_cols=421 Identities=19% Similarity=0.143 Sum_probs=226.1
Q ss_pred cccccCcccceeeeehhccCCC------hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 3 RCLCSELTRLTILLFYLMTSDS------PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~~~~------~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
+..|.+|++++++.+.+....+ +.|+.|+ ++|.+++..+.+|+++++|++|++++|++.+..|..|+++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 3455666666666655433322 2233333 55666654444566777777777777776666666666777777
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCC--C------------------CCCCCcccc-c-------
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ--H------------------PTVLPWTTL-S------- 127 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~--l------------------~~l~p~~~~-~------- 127 (486)
+|+++ +|.+++..|..+.. +++|++|++++|.++.++. + ....|..+. +
T Consensus 125 ~L~Ls-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 125 TLDLS-HNGLSSTKLGTQVQ--LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp EEECC-SSCCSCCCCCSSSC--CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred EEECC-CCcccccCchhhcc--cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 77776 66666666666666 6666666666666654321 0 000111100 0
Q ss_pred --------------------CccCeeecccCcccccCCccccCCCC--CCEEECcCCcCcccccchhhhcCCCCcEEEcc
Q 048443 128 --------------------TKIRHYLISKNNLTGEIPSWICNLSS--LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 128 --------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~ 185 (486)
++|++|++++|.+++..|..|.+++. |++|++++|++++..|..+..++. |++|+++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~ 280 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEYFFLE 280 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT-CCEEECC
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc-ccEeeCC
Confidence 22333333333333333333333322 555555555554444444444444 5555555
Q ss_pred CccccccCCccccCCCCccEEECcCCcccc-----ccCc----cCcCCCCCCEEEccCCccccCCCccccCCCCCC----
Q 048443 186 GKNFFGTTPDTFMNGSDLRMVDLSHNLLQG-----KIPK----SLANCAVLEISDLRNNQINDTFPIWLGSLLELN---- 252 (486)
Q Consensus 186 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---- 252 (486)
+|.+.+..+..|.++++|++|++++|...+ .+|. .|..+++|++|++++|.+.+..+..|..+++|+
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 555544444333333333333333222110 0111 233344444444444444444444444444444
Q ss_pred ------------------------------------------------EEEcCccCCCccccCChhhhhccccccccccc
Q 048443 253 ------------------------------------------------ILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 253 ------------------------------------------------~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
.|++++|. ..+.+|...|..+++|+.++++
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE--IGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CEEECCSGGGTTCTTCCEEECC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc--CccccCcccccCcccccEEecC
Confidence 44444432 2333444445555555555555
Q ss_pred cchhcccccccc----------cccccc---cc------CCCCcceEEeecCCCccccC---cccCcccEEEcccccccc
Q 048443 285 QLRYMENFLSSY----------FSFDFY---RY------FPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFDG 342 (486)
Q Consensus 285 ~~~~~~~~~~~~----------~~~~~~---~~------~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~ 342 (486)
+|.........+ +..+.. .. -.+.+..++++++.+..... ..+++|+.|++++|.+++
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 443211000000 000000 00 11456677777776655433 236778888888888875
Q ss_pred cCc--------cchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCcccc
Q 048443 343 EMP--------TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTG 403 (486)
Q Consensus 343 ~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~ 403 (486)
..+ ..+.++++|++|+|++|+++...+..|.++++|++|++++|+ +++|++|++++|++++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 321 236778888888888888885555678888999999998887 4678899999999987
Q ss_pred CCCCCC--CCCCCCCccccCCcCCCCCC
Q 048443 404 PIPQAN--QFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 404 ~~p~~~--~~~~~~~~~~~~np~~c~~~ 429 (486)
..|... .+..+..+++.+|||.|+|+
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cChhHhcccccccCEEEccCCCcccCCc
Confidence 666432 46778888999999999854
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=338.94 Aligned_cols=404 Identities=17% Similarity=0.133 Sum_probs=291.4
Q ss_pred cccccCcccceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 3 RCLCSELTRLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
.|.|..-.....|..... ...++.++.|+ ++|.+++..+.+|.++++|++|+|++|++.+..+..|.++++|++|
T Consensus 2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence 576655444455544323 23445678887 8899999889999999999999999999998888999999999999
Q ss_pred ccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc-cCCccccCCCCCC
Q 048443 78 DTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG-EIPSWICNLSSLY 155 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 155 (486)
+++ +|.+++..|..|.. +++|++|++++|.++.++. ..+. +++|++|++++|.+++ .+|..|.++++|+
T Consensus 82 ~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 82 ILT-GNPIQSLALGAFSG--LSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp ECT-TCCCCEECTTTTTT--CTTCCEEECTTSCCCCSTT------CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred eCc-CCcCCccCHhhhcC--ccccccccccccccccCCC------ccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 999 99999988899999 9999999999999998743 2344 8999999999999986 4689999999999
Q ss_pred EEECcCCcCcccccchhhhcCCCC----cEEEccCccccccCCccccC--------------------------------
Q 048443 156 VLDLSDNNLSGELLQCLGNFSGGL----SVLSLQGKNFFGTTPDTFMN-------------------------------- 199 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~~l~~~~~~L----~~L~L~~n~i~~~~~~~~~~-------------------------------- 199 (486)
+|++++|++++..+..++.+.. | +.+++++|.+.+..+..|..
T Consensus 153 ~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 153 HLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp EEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred EEeCcCCccceecHHHccchhc-cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceee
Confidence 9999999999777777877776 7 78888888877665554443
Q ss_pred -------------------------------------------------CCCccEEECcCCccccccCccCcCCCCCCEE
Q 048443 200 -------------------------------------------------GSDLRMVDLSHNLLQGKIPKSLANCAVLEIS 230 (486)
Q Consensus 200 -------------------------------------------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 230 (486)
+++|++|++++|.++ .+|..+..+ +|++|
T Consensus 232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L 309 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHL 309 (570)
T ss_dssp EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEE
T ss_pred eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEE
Confidence 344444444444444 334444444 44444
Q ss_pred EccCCccccCCCcc-c-------------------cCCCCCCEEEcCccCCCccccCC--hhhhhccccccccccccchh
Q 048443 231 DLRNNQINDTFPIW-L-------------------GSLLELNILVLIQQLPCFMGKLP--SKYFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 231 ~L~~N~l~~~~~~~-~-------------------~~l~~L~~L~l~~n~~~~~~~ip--~~~~~~l~~L~~l~~~~~~~ 288 (486)
++++|.+. ..|.. + ..+++|+.|++++|. ...++ ...+..+++|+.++++++..
T Consensus 310 ~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 310 ELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG---LSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp EEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC---CBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred eeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc---cCccccccccccccCccCEEECCCCcc
Confidence 44444443 12210 0 122333333333331 11110 11234444444444444422
Q ss_pred ccccccccccccccccCCCCcceEEeecCCCcccc----CcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH----DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
.... .. -.-.+.+..++++.+.+.... ...+++|+.|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 386 ~~~~-~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 457 (570)
T 2z63_A 386 ITMS-SN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457 (570)
T ss_dssp EEEE-EE-------EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred cccc-cc-------ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC
Confidence 1100 00 001245677888877665432 33478899999999999988899999999999999999999
Q ss_pred C-ccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCCcCCCCCCC
Q 048443 365 Q-GHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGNSRLCGKPL 430 (486)
Q Consensus 365 ~-~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~np~~c~~~~ 430 (486)
+ +.+|..+..+++|++|++++|+ +++|++|++++|++++..|.. ..+..+..+++.+||+.|+++.
T Consensus 458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8 5788999999999999999998 568999999999999877754 4677888899999999997553
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=356.14 Aligned_cols=393 Identities=20% Similarity=0.144 Sum_probs=292.9
Q ss_pred cccccCcccceeeeehhcc-------CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCccc--ccCCC
Q 048443 3 RCLCSELTRLTILLFYLMT-------SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPAS--IGSLS 72 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~-------~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~--~~~l~ 72 (486)
+..+.+|++|+++.+.... ...+.|+.|+ ++|.+.+..|.+|+++++|++|+|++|.+.+..|.. |..++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 4678899999999884332 2234566665 889999999999999999999999999998866655 89999
Q ss_pred CCCeeccCCCCcccccCC-chhccccCCCCcEEEccCCCCCCCCC----------CCCC----------CCcccc-cC--
Q 048443 73 SLERLDTFPPMKIHGNIP-KWLLNPSMKNFSYLNLSKNYFPRFDQ----------HPTV----------LPWTTL-ST-- 128 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p-~~~~~~~l~~L~~L~Ls~N~l~~~~~----------l~~l----------~p~~~~-~~-- 128 (486)
+|++|+++ +|.+++..+ ..+.+ +++|++|++++|.++.+.. +..+ .|..+. ++
T Consensus 124 ~L~~L~Ls-~N~l~~~~~~~~~~~--L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 124 ALTRLDLS-KNQIRSLYLHPSFGK--LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCCEEEEE-SCCCCCCCCCGGGGT--CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred CCCEEECC-CCcccccccchhHhh--CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 99999999 999987765 57888 9999999999999875421 1111 122111 22
Q ss_pred ----ccCeeecccCcccccCCccccC--------------------------------------CCCCCEEECcCCcCcc
Q 048443 129 ----KIRHYLISKNNLTGEIPSWICN--------------------------------------LSSLYVLDLSDNNLSG 166 (486)
Q Consensus 129 ----~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------l~~L~~L~Ls~N~i~~ 166 (486)
.|++|++++|.+++..+..+.. .++|+.|++++|.+.+
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 3788888888776554443321 2578888888888887
Q ss_pred cccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCcccc
Q 048443 167 ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLG 246 (486)
Q Consensus 167 ~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 246 (486)
..+..+..++. |+.|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|.
T Consensus 281 ~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 281 LNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp ECSCCSSSCCC-CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred cChhhhhcCCC-CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 77777888877 88888888888888888888888888888888888877788888888888888888888877777888
Q ss_pred CCCCCCEEEcCccCCCc----------------cccCCh---------------------hhhhccccccccccccchhc
Q 048443 247 SLLELNILVLIQQLPCF----------------MGKLPS---------------------KYFQCWNAMKFANSSQLRYM 289 (486)
Q Consensus 247 ~l~~L~~L~l~~n~~~~----------------~~~ip~---------------------~~~~~l~~L~~l~~~~~~~~ 289 (486)
.+++|+.|++++|.-.. ...+|. ..+..+++|+.+++++|...
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 88888888888763111 011111 01224455555555555321
Q ss_pred cccccccccccccccCCCCcceEEeecCCCcccc--------CcccCcccEEEcccccccccCccchhccCCCCeeeCCC
Q 048443 290 ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH--------DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLAS 361 (486)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 361 (486)
.. .........+.+..++++++.+.... ...+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus 440 ~~------~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 440 SC------SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp CC------CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred cc------ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 10 00000111356788999998875322 23468899999999999988888899999999999999
Q ss_pred cccCccCchhccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCCC
Q 048443 362 NNLQGHIPSCLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 362 N~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p~ 407 (486)
|++++..+..+. ++|++|++++|+ +.+|+.+++++|++.|.++.
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccccc
Confidence 999987777765 899999999999 44789999999999988764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=337.59 Aligned_cols=390 Identities=18% Similarity=0.097 Sum_probs=257.6
Q ss_pred cccccCcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 3 RCLCSELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
+..|.+|++++++.+.+... ..+.|+.|+ ++|.+.+..|.+|+++++|++|++++|++.+..+..|.++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 56678888888887764332 223455554 77888888888888888888888888887777677777788888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCC--------CC--CC-------------------------
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ--------HP--TV------------------------- 120 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~--------l~--~l------------------------- 120 (486)
+|+++ +|.+.+.....+.. +++|++|++++|.++.++. +. .+
T Consensus 133 ~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 133 SLYLG-SNHISSIKLPKGFP--TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp EEECC-SSCCCCCCCCTTCC--CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred EEECC-CCcccccCcccccC--CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 88887 77777654445555 6677777777776653211 11 00
Q ss_pred ------------------------------------------------------------CCcccc-cCccCeeecccCc
Q 048443 121 ------------------------------------------------------------LPWTTL-STKIRHYLISKNN 139 (486)
Q Consensus 121 ------------------------------------------------------------~p~~~~-~~~L~~L~Ls~n~ 139 (486)
.+..+. +++|++|++++|+
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 011122 4455555555555
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCc-cccCCCCccEEECcCCcccccc-
Q 048443 140 LTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD-TFMNGSDLRMVDLSHNLLQGKI- 217 (486)
Q Consensus 140 l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~~~- 217 (486)
++ .+|..+..+++|++|++++|.+++..|..+..++. |++|++++|.+.+.++. .+..+++|++|++++|.+++..
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 55 44555555555555555555555444555555554 55555555555533332 3555666666666666665443
Q ss_pred -CccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccccc
Q 048443 218 -PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSY 296 (486)
Q Consensus 218 -p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 296 (486)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|. ..+..|...+..+++|+.++++++.........
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 444 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR--LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL- 444 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC--EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT-
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc--CCCcccchhhhCcccCCEEECCCCccCCcCHHH-
Confidence 4556666666666666666665556666666666666666653 333444444666666666666665321110000
Q ss_pred ccccccccCCCCcceEEeecCCCccc------cCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch
Q 048443 297 FSFDFYRYFPQNDYSITMSNEGQMMT------HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS 370 (486)
Q Consensus 297 ~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 370 (486)
. .-.+.+..++++++.+... ....+++|+.|++++|++++..|..|..+++|++|+|++|++++..|.
T Consensus 445 -----~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 445 -----F-DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp -----T-TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred -----H-hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 0 1135678999999987652 234478999999999999988899999999999999999999999999
Q ss_pred hccCCCCCCEEeCCCCCC-----------CCCCEEeccCCccccCCCC
Q 048443 371 CLGSLTNLESLDLSKNRL-----------TFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 371 ~~~~l~~L~~L~Ls~N~l-----------~~L~~L~ls~N~l~~~~p~ 407 (486)
.+..+++| +|++++|++ ++|+.+++++|+++|.++.
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999999 999999993 4789999999999987763
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=345.20 Aligned_cols=337 Identities=18% Similarity=0.201 Sum_probs=289.0
Q ss_pred hhhhhhc-cCCccccc-----------------CCcCCC--CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc
Q 048443 25 PFLDRLQ-RLSDFSGQ-----------------IPPSLG--NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK 84 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~-----------------~p~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~ 84 (486)
+.|+.|+ ++|.+++. +|+.++ ++++|++|+|++|++.+.+|..|+++++|++|+++ +|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA-CNR 284 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT-TCT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc-CCC
Confidence 3444554 88888886 999999 99999999999999999999999999999999999 998
Q ss_pred -ccc-cCCchhccccC------CCCcEEEccCCCCCCCCCCCCCCCc--ccc-cCccCeeecccCcccccCCccccCCCC
Q 048443 85 -IHG-NIPKWLLNPSM------KNFSYLNLSKNYFPRFDQHPTVLPW--TTL-STKIRHYLISKNNLTGEIPSWICNLSS 153 (486)
Q Consensus 85 -i~~-~~p~~~~~~~l------~~L~~L~Ls~N~l~~~~~l~~l~p~--~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 153 (486)
+++ .+|..+.. + ++|++|++++|.++. +|. .+. +++|++|++++|+++|.+| .|..+++
T Consensus 285 ~l~~~~lp~~~~~--L~~~~~l~~L~~L~L~~n~l~~-------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 285 GISGEQLKDDWQA--LADAPVGEKIQIIYIGYNNLKT-------FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp TSCHHHHHHHHHH--HHHSGGGGTCCEEECCSSCCSS-------CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred CCccccchHHHHh--hhccccCCCCCEEECCCCcCCc-------cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 998 89998887 6 999999999999996 555 566 8999999999999999999 8999999
Q ss_pred CCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC--CccEEECcCCccccccCccCc-------CC
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS--DLRMVDLSHNLLQGKIPKSLA-------NC 224 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l 224 (486)
|++|++++|+++ .+|..+..++.+|++|++++|.++ .+|..+...+ +|++|++++|.+++..|..+. .+
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999999999999 888888888755999999999998 6787777655 899999999999999998888 78
Q ss_pred CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccc-------cccccccccchhccccccccc
Q 048443 225 AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWN-------AMKFANSSQLRYMENFLSSYF 297 (486)
Q Consensus 225 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~-------~L~~l~~~~~~~~~~~~~~~~ 297 (486)
++|++|++++|.+.+..+..+..+++|+.|++++| ....+|...+.... +|+.+++++|... ...
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp---- 504 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGN---MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS---- 504 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS---CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC----
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC---CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC----
Confidence 89999999999999655566778999999999998 45588887766543 8888888877332 100
Q ss_pred cccccccCCCCcceEEeecCCCccccC-cccCcccEEEcccccccccCccchhccCCCCeeeC------CCcccCccCch
Q 048443 298 SFDFYRYFPQNDYSITMSNEGQMMTHD-KIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGL------ASNNLQGHIPS 370 (486)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~ 370 (486)
..+. ..+++|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|.
T Consensus 505 -----------------------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 505 -----------------------DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp -----------------------GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred -----------------------hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 0111 135789999999999996 8999999999999999 56888889999
Q ss_pred hccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCC
Q 048443 371 CLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 371 ~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p 406 (486)
.+..+++|++|++++|+ .++|++|++++|++...-+
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTTCEEEC
T ss_pred HHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCCccccH
Confidence 99999999999999999 3578999999999875443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=340.64 Aligned_cols=227 Identities=23% Similarity=0.191 Sum_probs=142.3
Q ss_pred Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCc
Q 048443 24 SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFS 102 (486)
Q Consensus 24 ~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~ 102 (486)
++.++.|+ ++|.+.+..+.+|+++++|++|++++|.+.+..|..|+++++|++|+++ +|.+++..+..|.. +++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~--l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFAF--CTNLT 100 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC-SSCCCCCCTTTTTT--CTTCS
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC-CCccCccChhhhcc--CCCCC
Confidence 34566666 6666766666667777777777777777777777777777777777777 77777555556666 77777
Q ss_pred EEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhh--cCC--
Q 048443 103 YLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGN--FSG-- 177 (486)
Q Consensus 103 ~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~--~~~-- 177 (486)
+|++++|.+++++ |..+. +++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. ...
T Consensus 101 ~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 101 ELHLMSNSIQKIK------NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp EEECCSSCCCCCC------SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred EEECCCCccCccC------hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 7777777776653 22333 555555555555555555555555555555555555554433333221 122
Q ss_pred ------------------------------------------------CCcEEEccCccccccCCccccCCC--CccEEE
Q 048443 178 ------------------------------------------------GLSVLSLQGKNFFGTTPDTFMNGS--DLRMVD 207 (486)
Q Consensus 178 ------------------------------------------------~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~ 207 (486)
+|+.|++++|.+.+..+..|..++ +|++|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 144444444555444455555443 377777
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+++|.+++..|.+|+.+++|++|++++|.+.+..|.++..+++|+.|+++++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 7777777666677777777888888877777776766777777777766653
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=339.25 Aligned_cols=388 Identities=18% Similarity=0.141 Sum_probs=261.8
Q ss_pred CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCC
Q 048443 23 DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101 (486)
Q Consensus 23 ~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L 101 (486)
.++.++.|+ ++|++++..|.+|+++++|++|++++|++.+..|.+|.++++|++|+++ +|.+++..|..+.. +++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~--l~~L 100 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGP--LSSL 100 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTT--CTTC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhcc--CCCC
Confidence 346778887 8888998888899999999999999999998888899999999999999 99999888888888 9999
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccC-CccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEI-PSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
++|++++|.++.++ .|..+. +++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+.. |
T Consensus 101 ~~L~Ls~n~l~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L 174 (549)
T 2z81_A 101 KYLNLMGNPYQTLG-----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-I 174 (549)
T ss_dssp CEEECTTCCCSSSC-----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-E
T ss_pred cEEECCCCcccccc-----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc-C
Confidence 99999999988643 233444 788888888888743344 457888888888888888888777777776665 6
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCcccccc---------------------------C----ccCcCCCCCC
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI---------------------------P----KSLANCAVLE 228 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------p----~~~~~l~~L~ 228 (486)
++|++++|.+.......+..+++|++|++++|.+++.. + ..+..+++|+
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 66666666654332222334566666666666655421 1 1122334444
Q ss_pred EEEccCCccccCCC-----------------------------------ccccCCCCCCEEEcCccCCCccccCChhhhh
Q 048443 229 ISDLRNNQINDTFP-----------------------------------IWLGSLLELNILVLIQQLPCFMGKLPSKYFQ 273 (486)
Q Consensus 229 ~L~L~~N~l~~~~~-----------------------------------~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~ 273 (486)
.+++++|.+.+... ..+...++|+.|+++++ ....+|...+.
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n---~l~~ip~~~~~ 331 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS---KVFLVPCSFSQ 331 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS---CCCCCCHHHHH
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC---ccccCCHHHHh
Confidence 44444444432110 00112345666666665 45678888777
Q ss_pred ccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcccc-----CcccCcccEEEcccccccccCccch
Q 048443 274 CWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH-----DKIPDILKGIILSSNRFDGEMPTSI 348 (486)
Q Consensus 274 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~L~~L~Ls~N~l~~~~~~~~ 348 (486)
.+++|+.+++++|........... .. ...+.++.++++++.+.... ...+++|+.|++++|+++ .+|..+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~---~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 406 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSA---CK-GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHT---CT-TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC
T ss_pred cCccccEEEccCCccccccccchh---hh-hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh
Confidence 888888888888854321110000 00 11235567777777664321 334667777777777777 566666
Q ss_pred hccCCCCeeeCCCcccCccCchhc------------------cCCCCCCEEeCCCCC---------CCCCCEEeccCCcc
Q 048443 349 ANLKGLQVLGLASNNLQGHIPSCL------------------GSLTNLESLDLSKNR---------LTFLEFFNATHNNL 401 (486)
Q Consensus 349 ~~l~~L~~L~Ls~N~l~~~~~~~~------------------~~l~~L~~L~Ls~N~---------l~~L~~L~ls~N~l 401 (486)
..+++|++|++++|++++ +|..+ ..+++|++|++++|+ +++|++|++++|++
T Consensus 407 ~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQL 485 (549)
T ss_dssp CCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCC
T ss_pred cccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCcc
Confidence 677777777777777662 22221 256778888888887 45678888888888
Q ss_pred ccCCCCC-CCCCCCCCccccCCcCCCCC
Q 048443 402 TGPIPQA-NQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 402 ~~~~p~~-~~~~~~~~~~~~~np~~c~~ 428 (486)
++..|.. ..+..+..+++.+||+.|+|
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 8776653 45677788888999998863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=345.36 Aligned_cols=349 Identities=18% Similarity=0.224 Sum_probs=194.3
Q ss_pred CcccccCCcCCCCCCCCCEeeCcCCCCCC-----------------CCccccc--CCCCCCeeccCCCCcccccCCchhc
Q 048443 34 SDFSGQIPPSLGNLNQLQWLDLAFNNFLR-----------------ELPASIG--SLSSLERLDTFPPMKIHGNIPKWLL 94 (486)
Q Consensus 34 n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~-----------------~~~~~~~--~l~~L~~L~L~~~n~i~~~~p~~~~ 94 (486)
|++++ +|+.|+++++|++|+|++|++.+ .+|..++ ++++|++|+|+ +|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls-~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY-NCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-SCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc-CCCCCccChHHHh
Confidence 44444 56666666666666666666555 2555554 66666666666 6666666666666
Q ss_pred cccCCCCcEEEccCCC-CCC-CCCCCCCCCcccc--------cCccCeeecccCcccccCCc--cccCCCCCCEEECcCC
Q 048443 95 NPSMKNFSYLNLSKNY-FPR-FDQHPTVLPWTTL--------STKIRHYLISKNNLTGEIPS--WICNLSSLYVLDLSDN 162 (486)
Q Consensus 95 ~~~l~~L~~L~Ls~N~-l~~-~~~l~~l~p~~~~--------~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N 162 (486)
+ +++|++|++++|+ ++. . +|..+. +++|++|++++|+++ .+|. .|.++++|++|++++|
T Consensus 513 ~--L~~L~~L~Ls~N~~lsg~~------iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 513 D--LPELQSLNIACNRGISAAQ------LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp G--CSSCCEEECTTCTTSCHHH------HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS
T ss_pred C--CCCCCEEECcCCCCccccc------chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC
Confidence 6 6666666666665 543 1 222222 236666666666666 5555 5666666666666666
Q ss_pred cCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC-ccEEECcCCccccccCccCcCCCC--CCEEEccCCcccc
Q 048443 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD-LRMVDLSHNLLQGKIPKSLANCAV--LEISDLRNNQIND 239 (486)
Q Consensus 163 ~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~ 239 (486)
+++ .+| .+..++. |+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+
T Consensus 584 ~l~-~lp-~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 584 KVR-HLE-AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCC-BCC-CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred Ccc-cch-hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 665 455 5555554 666666666665 45555555665 666666666665 45555554433 6666666666655
Q ss_pred CCCccc---c--CCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEe
Q 048443 240 TFPIWL---G--SLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITM 314 (486)
Q Consensus 240 ~~~~~~---~--~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (486)
.+|... . .+++|+.|++++| ....+|...+..+++|+.+++++|... ......... ..+
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N---~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~-----~~~------- 722 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYN---EIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP-----KDG------- 722 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSS---CCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC-----TTS-------
T ss_pred ccccchhhhccccCCCcCEEEccCC---cCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc-----ccc-------
Confidence 444221 1 2335666666665 344566666666666666666665221 000000000 000
Q ss_pred ecCCCccccCcccCcccEEEcccccccccCccchh--ccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCC------C
Q 048443 315 SNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIA--NLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK------N 386 (486)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N 386 (486)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |
T Consensus 723 --------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 723 --------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp --------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred --------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 0000125666666666666 5565554 66666666666666664 566666666666666655 2
Q ss_pred C-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCC
Q 048443 387 R-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 387 ~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c 426 (486)
+ +++|+.|++++|++ +.+|.. ....+..+++.+|++..
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 2 44666666666666 556654 23455666666666543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=332.15 Aligned_cols=382 Identities=20% Similarity=0.097 Sum_probs=277.6
Q ss_pred cCcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
..+++++++.+.+... ..+.++.|+ ++|.+++..|.+|+++++|++|+|++|++.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4566777776663322 234455555 778888877888888888888888888888887888888888888888
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC---
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY--- 155 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--- 155 (486)
+ +|.+++..+..+.+ +++|++|++++|.++.+. +|..+. +++|++|++++|++++..+..|..+.+|+
T Consensus 112 ~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 112 V-ETKLASLESFPIGQ--LITLKKLNVAHNFIHSCK-----LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp T-TSCCCCSSSSCCTT--CTTCCEEECCSSCCCCCC-----CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred c-CCccccccccccCC--CCCCCEEeCCCCccccee-----chHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 8 88888777777777 888888888888887532 355555 77777777777777665554444333222
Q ss_pred -EEECcCCcCcccccc----------------------------------------------------------------
Q 048443 156 -VLDLSDNNLSGELLQ---------------------------------------------------------------- 170 (486)
Q Consensus 156 -~L~Ls~N~i~~~~~~---------------------------------------------------------------- 170 (486)
+|++++|.+++..+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 333333333311111
Q ss_pred --------------------------------------hhhhcCCCCcEEEccCccccccCC------------------
Q 048443 171 --------------------------------------CLGNFSGGLSVLSLQGKNFFGTTP------------------ 194 (486)
Q Consensus 171 --------------------------------------~l~~~~~~L~~L~L~~n~i~~~~~------------------ 194 (486)
.+..++. |+.|++++|.+ +.+|
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~-L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK-WQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCC-CSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhhhcccccc-CCEEEcccccC-cccccCCCCccceeeccCCcCc
Confidence 1122222 44444444444 2222
Q ss_pred --ccccCCCCccEEECcCCccccc--cCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 195 --DTFMNGSDLRMVDLSHNLLQGK--IPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 195 --~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|. ..+..|..
T Consensus 342 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~--l~~~~~~~ 418 (606)
T 3vq2_A 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST--LKRVTEFS 418 (606)
T ss_dssp EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE--EESTTTTT
T ss_pred cchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc--cCCccChh
Confidence 1355778899999999998865 37888999999999999999875 55889999999999999984 44444546
Q ss_pred hhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccc-c---CcccCcccEEEcccccccccCcc
Q 048443 271 YFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMT-H---DKIPDILKGIILSSNRFDGEMPT 346 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~~L~~L~Ls~N~l~~~~~~ 346 (486)
.+..+++|+.++++++.........+. -.+.+..++++++.+... . ...+++|+.|++++|++++..|.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFL-------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTT-------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhc-------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 788999999999999854321111111 124678888888877652 2 33478999999999999988899
Q ss_pred chhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCC----------C-CCCEEeccCCccccCCCCC
Q 048443 347 SIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL----------T-FLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 347 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----------~-~L~~L~ls~N~l~~~~p~~ 408 (486)
.+..+++|++|++++|++++..|..|..+++|++|++++|++ + +|+++++++|++.|.++..
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999999998899999999999999999993 3 5999999999999887753
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=326.14 Aligned_cols=327 Identities=20% Similarity=0.166 Sum_probs=199.4
Q ss_pred CCcccccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 1 EKRCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
|..|.|..-.....|...... .+|..+. ++++.|+|++|++.+..+..|.++++|++|+|+
T Consensus 4 p~~C~C~~~~~~v~c~~~~l~-----------------~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 64 (477)
T 2id5_A 4 PPRCECSAQDRAVLCHRKRFV-----------------AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64 (477)
T ss_dssp STTCEEETTTTEEECCSCCCS-----------------SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCeECCCCCEEEeCCCCcC-----------------cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECC
Confidence 778999764444444332121 2333332 356666666666666555666666666666666
Q ss_pred CCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEEC
Q 048443 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDL 159 (486)
Q Consensus 81 ~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 159 (486)
+|.+++..|..|.+ +++|++|+|++|.++.+|. ..+. +++|++|++++|++++..+..|..+++|++|++
T Consensus 65 -~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 65 -ENIVSAVEPGAFNN--LFNLRTLGLRSNRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp -TSCCCEECTTTTTT--CTTCCEEECCSSCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred -CCccCEeChhhhhC--CccCCEEECCCCcCCccCc------ccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 66666655666666 6666666666666665421 2233 566666666666666555556666666666666
Q ss_pred cCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 160 SDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 160 s~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
++|.+++..+..|..++. |++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 136 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp CCTTCCEECTTSSTTCTT-CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCccceeChhhccCCCC-CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 666666555555665555 6666666666655555556666666666666666665555556666666666666665555
Q ss_pred CCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCC
Q 048443 240 TFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319 (486)
Q Consensus 240 ~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 319 (486)
..|.......+|+.|++++| ....+|...+..+++|+.+++++|.... ..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-------------------------- 264 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHC---NLTAVPYLAVRHLVYLRFLNLSYNPIST-IE-------------------------- 264 (477)
T ss_dssp EECTTTTTTCCCSEEEEESS---CCCSCCHHHHTTCTTCCEEECCSSCCCE-EC--------------------------
T ss_pred ccCcccccCccccEEECcCC---cccccCHHHhcCccccCeeECCCCcCCc-cC--------------------------
Confidence 55554444556666666665 4445555555555555555554442110 00
Q ss_pred ccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 320 MMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 320 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
......+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus 265 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 -GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 0001124568888888888887778888888888888888888887777777888888888888877
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=322.45 Aligned_cols=345 Identities=17% Similarity=0.104 Sum_probs=244.7
Q ss_pred CcccccCcccceeeeehhccC---CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCC-cccccCCCCCCe
Q 048443 2 KRCLCSELTRLTILLFYLMTS---DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLREL-PASIGSLSSLER 76 (486)
Q Consensus 2 ~~c~c~~l~~l~~~~~~~~~~---~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~ 76 (486)
..|.|.. +...|.....+. .++.++.|+ ++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++
T Consensus 6 ~~c~~~~--~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 6 SECSVIG--YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp -CCEEET--TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred ceeEEEc--cccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE
Confidence 3466643 233444332222 446788887 889999998999999999999999999987554 678999999999
Q ss_pred eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc-ccCCCCC
Q 048443 77 LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW-ICNLSSL 154 (486)
Q Consensus 77 L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L 154 (486)
|+++ +|.+++..|..+.+ +++|++|++++|.+++... .+..+. +++|++|++++|++++..|.. +.++++|
T Consensus 84 L~Ls-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 84 LKLD-YNQFLQLETGAFNG--LANLEVLTLTQCNLDGAVL----SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp EECT-TCTTCEECTTTTTT--CTTCCEEECTTSCCBTHHH----HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred EeCC-CCccCccChhhccC--cccCCEEeCCCCCCCcccc----CcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 9999 99999999999999 9999999999999975200 112244 899999999999999877776 8999999
Q ss_pred CEEECcCCcCcccccchhhhc--CCCCcEEEccCccccccCCccc--------cCCCCccEEECcCCccccccCccCcCC
Q 048443 155 YVLDLSDNNLSGELLQCLGNF--SGGLSVLSLQGKNFFGTTPDTF--------MNGSDLRMVDLSHNLLQGKIPKSLANC 224 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~~~l~~~--~~~L~~L~L~~n~i~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~p~~~~~l 224 (486)
++|++++|++++..+..+..+ .. |+.|++++|.+.+..+..+ ..+++|++|++++|.+++..|..+...
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCE-EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred cEEeCCCCcccccChhhhhcccccc-ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 999999999998888888776 44 9999999999987655443 356889999999999988777766543
Q ss_pred ---CCCCEEEccCCccccC----------CCccccC--CCCCCEEEcCccCCCccccCChhhhhccccccccccccchhc
Q 048443 225 ---AVLEISDLRNNQINDT----------FPIWLGS--LLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM 289 (486)
Q Consensus 225 ---~~L~~L~L~~N~l~~~----------~~~~~~~--l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~ 289 (486)
++|+.|++++|.+.+. .+..+.. .++|+.|++++| ....++...+..+++|+.+++++|...
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS---KIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS---CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc---cccccchhhcccCCCCCEEECCCCccc
Confidence 7888999988865432 1222222 368899999887 333444444555555555555554221
Q ss_pred cccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCc
Q 048443 290 ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP 369 (486)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 369 (486)
... ......+++|+.|++++|.+++..|..+..+++|++|+|++|++++..|
T Consensus 313 ~~~----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 313 KID----------------------------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp EEC----------------------------TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ccC----------------------------hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 000 0001113456666666666665555666666666666666666665556
Q ss_pred hhccCCCCCCEEeCCCCC
Q 048443 370 SCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 370 ~~~~~l~~L~~L~Ls~N~ 387 (486)
..|..+++|++|++++|+
T Consensus 365 ~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hhccccccccEEECCCCc
Confidence 666666666666666555
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=329.70 Aligned_cols=406 Identities=17% Similarity=0.147 Sum_probs=300.9
Q ss_pred ccccCcccceeeeehhccC----CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeec
Q 048443 4 CLCSELTRLTILLFYLMTS----DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLD 78 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~----~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 78 (486)
|.|..-...+.|.....+. .|+.++.|+ ++|+|++..|.+|.++++|++|+|++|++.++.+.+|.++++|++|+
T Consensus 27 c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 27 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp SEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence 5554333444555443333 445788888 99999998889999999999999999999999899999999999999
Q ss_pred cCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc-cCCccccCCCCCCE
Q 048443 79 TFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG-EIPSWICNLSSLYV 156 (486)
Q Consensus 79 L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 156 (486)
|+ +|++++..+.+|.+ +++|++|++++|+++.+| +..+. +++|++|++++|.+++ ..|..+..+++|++
T Consensus 107 Ls-~N~l~~l~~~~f~~--L~~L~~L~Ls~N~l~~l~------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 107 LT-GNPIQSLALGAFSG--LSSLQKLVAVETNLASLE------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp CT-TCCCCEECGGGGTT--CTTCCEEECTTSCCCCST------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred cc-CCcCCCCCHHHhcC--CCCCCEEECCCCcCCCCC------hhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 99 99999888888998 999999999999999874 34455 8999999999999986 46788899999999
Q ss_pred EECcCCcCcccccchhhhcCC---CCcEEEccCccccccCC---------------------------------------
Q 048443 157 LDLSDNNLSGELLQCLGNFSG---GLSVLSLQGKNFFGTTP--------------------------------------- 194 (486)
Q Consensus 157 L~Ls~N~i~~~~~~~l~~~~~---~L~~L~L~~n~i~~~~~--------------------------------------- 194 (486)
|++++|++++..+..+..+.. ....++++.|.+....+
T Consensus 178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred hcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 999999998776666654332 12233443333221100
Q ss_pred ----------------------------------------------------------------ccccCCCCccEEECcC
Q 048443 195 ----------------------------------------------------------------DTFMNGSDLRMVDLSH 210 (486)
Q Consensus 195 ----------------------------------------------------------------~~~~~l~~L~~L~L~~ 210 (486)
..+....+++.|++.+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 337 (635)
T ss_dssp EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEES
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccc
Confidence 0122234566777777
Q ss_pred CccccccCc-------------------cCcCCCCCCEEEccCCcccc--CCCccccCCCCCCEEEcCccCCCccccCCh
Q 048443 211 NLLQGKIPK-------------------SLANCAVLEISDLRNNQIND--TFPIWLGSLLELNILVLIQQLPCFMGKLPS 269 (486)
Q Consensus 211 N~l~~~~p~-------------------~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~ 269 (486)
|.+....+. ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+ ....++.
T Consensus 338 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~---~~~~~~~ 414 (635)
T 4g8a_A 338 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSS 414 (635)
T ss_dssp CEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC---SEEEECS
T ss_pred ccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc---ccccccc
Confidence 665432221 23357889999999998853 45566778889999998876 2333333
Q ss_pred hhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccC---cccCcccEEEccccccc-ccCc
Q 048443 270 KYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFD-GEMP 345 (486)
Q Consensus 270 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~-~~~~ 345 (486)
. +..++.++.+++..+........... .--..+..++++.+.+..... ..++.++.|++++|.+. +..|
T Consensus 415 ~-~~~l~~L~~l~l~~~~~~~~~~~~~~------~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 415 N-FLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp C-CTTCTTCCEEECTTSEEESTTSSCTT------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred c-ccccccccchhhhhcccccccccccc------ccccccccccccccccccccccccccchhhhhhhhhhcccccccCc
Confidence 3 66778888888776643221111100 111344566777766654433 34688999999999854 4578
Q ss_pred cchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCCC-CC-C
Q 048443 346 TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQAN-QF-P 412 (486)
Q Consensus 346 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~~-~~-~ 412 (486)
..|..+++|++|+|++|++++..|..|.++++|++|+|++|+ +++|++|++++|++++..|... .+ .
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 889999999999999999999999999999999999999998 5689999999999999888763 33 5
Q ss_pred CCCCccccCCcCCCCC
Q 048443 413 TFGYSSFNGNSRLCGK 428 (486)
Q Consensus 413 ~~~~~~~~~np~~c~~ 428 (486)
++..+++.+|||.|+|
T Consensus 568 ~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 568 SLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCCEEECTTCCBCCSG
T ss_pred cCCEEEeeCCCCcccC
Confidence 6888899999999973
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=341.16 Aligned_cols=354 Identities=16% Similarity=0.147 Sum_probs=285.8
Q ss_pred hhhhc-cCCcccc-----------------cCCcCCC--CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc-c
Q 048443 27 LDRLQ-RLSDFSG-----------------QIPPSLG--NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK-I 85 (486)
Q Consensus 27 l~~L~-~~n~~~~-----------------~~p~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~-i 85 (486)
|+.|+ ++|.+++ .+|+.++ ++++|++|+|++|++.+.+|..|+++++|++|+++ +|+ +
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls-~N~~l 528 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA-CNRGI 528 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT-TCTTS
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc-CCCCc
Confidence 33444 8899998 4999988 99999999999999999999999999999999999 998 9
Q ss_pred cc-cCCchhccccCC-------CCcEEEccCCCCCCCCCCCCCCCc--ccc-cCccCeeecccCcccccCCccccCCCCC
Q 048443 86 HG-NIPKWLLNPSMK-------NFSYLNLSKNYFPRFDQHPTVLPW--TTL-STKIRHYLISKNNLTGEIPSWICNLSSL 154 (486)
Q Consensus 86 ~~-~~p~~~~~~~l~-------~L~~L~Ls~N~l~~~~~l~~l~p~--~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 154 (486)
++ .+|..+.. ++ +|++|++++|.++. +|. .+. +++|++|++++|+++ .+| .|..+++|
T Consensus 529 sg~~iP~~i~~--L~~~~~~l~~L~~L~Ls~N~L~~-------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 529 SAAQLKADWTR--LADDEDTGPKIQIFYMGYNNLEE-------FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp CHHHHHHHHHH--HHHCTTTTTTCCEEECCSSCCCB-------CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ccccchHHHHh--hhhcccccCCccEEEeeCCcCCc-------cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 88 88887766 55 99999999999996 556 566 899999999999999 888 89999999
Q ss_pred CEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC--ccEEECcCCccccccCccC---c--CCCCC
Q 048443 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD--LRMVDLSHNLLQGKIPKSL---A--NCAVL 227 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L 227 (486)
+.|++++|+++ .+|..+..++.+|+.|++++|.+. .+|..+..++. |+.|++++|.+++.+|... . .+++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 99999999999 888888888755999999999998 67887777654 9999999999987665422 2 34589
Q ss_pred CEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcc-------ccccccccccchhcccccccccccc
Q 048443 228 EISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCW-------NAMKFANSSQLRYMENFLSSYFSFD 300 (486)
Q Consensus 228 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l-------~~L~~l~~~~~~~~~~~~~~~~~~~ 300 (486)
++|++++|.+....+..+..+++|+.|++++| .+..+|...+... ++|+.+++++|... ..
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N---~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l-------- 743 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNN---LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL-------- 743 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSC---CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC--------
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCC---cCCccChHHhccccccccccCCccEEECCCCCCc-cc--------
Confidence 99999999999544444568999999999998 5558888766543 38888888877331 00
Q ss_pred ccccCCCCcceEEeecCCCccccC-cccCcccEEEcccccccccCccchhccCCCCeeeCCC------cccCccCchhcc
Q 048443 301 FYRYFPQNDYSITMSNEGQMMTHD-KIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLAS------NNLQGHIPSCLG 373 (486)
Q Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~ 373 (486)
...+. ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..|.
T Consensus 744 -------------------p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 744 -------------------SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp -------------------CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred -------------------hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 00111 135789999999999996 788899999999999976 888889999999
Q ss_pred CCCCCCEEeCCCCCC--------CCCCEEeccCCccccCCCCCC-CCCCCCCccccCCcCCC
Q 048443 374 SLTNLESLDLSKNRL--------TFLEFFNATHNNLTGPIPQAN-QFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 374 ~l~~L~~L~Ls~N~l--------~~L~~L~ls~N~l~~~~p~~~-~~~~~~~~~~~~np~~c 426 (486)
.+++|++|+|++|++ ++|+.|++++|++....+... .........+.+|+..+
T Consensus 804 ~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp GCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred cCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 999999999999993 468999999999875544321 01112334455565544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=321.86 Aligned_cols=377 Identities=17% Similarity=0.149 Sum_probs=236.4
Q ss_pred cccccCcccceeeeehhc---cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeec
Q 048443 3 RCLCSELTRLTILLFYLM---TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLD 78 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~---~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 78 (486)
-|.|...++++++++.+. ...++.++.|+ ++|.+.+..|.+|+++++|++|+|++|++.+..|..|.++++|++|+
T Consensus 27 ~~~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 27 PFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 366666677777766533 22345667776 77778777777888888888888888888887788888888888888
Q ss_pred cCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC--C
Q 048443 79 TFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL--Y 155 (486)
Q Consensus 79 L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~ 155 (486)
++ +|.++. +|.. . +++|++|++++|++++++ +|..+. +++|++|++++|++++. .+..+++| +
T Consensus 107 Ls-~N~l~~-lp~~--~--l~~L~~L~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~ 172 (562)
T 3a79_B 107 VS-HNRLQN-ISCC--P--MASLRHLDLSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLS 172 (562)
T ss_dssp CT-TSCCCE-ECSC--C--CTTCSEEECCSSCCSBCC-----CCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEE
T ss_pred CC-CCcCCc-cCcc--c--cccCCEEECCCCCccccC-----chHhhcccCcccEEecCCCccccC---chhhhhhceee
Confidence 88 888873 5544 4 888888888888887754 345566 78888888888888742 34555555 8
Q ss_pred EEECcCCcC--cccccchhhhcC-------------------------CCCcEEEccCcc--------------------
Q 048443 156 VLDLSDNNL--SGELLQCLGNFS-------------------------GGLSVLSLQGKN-------------------- 188 (486)
Q Consensus 156 ~L~Ls~N~i--~~~~~~~l~~~~-------------------------~~L~~L~L~~n~-------------------- 188 (486)
+|++++|.+ ++..|..+..+. .+|+.+++++|.
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 888888887 555555554422 013333333331
Q ss_pred --------cccc----CCccccCCCCccEEECcCCccccccCccC-----cCC--------------------------C
Q 048443 189 --------FFGT----TPDTFMNGSDLRMVDLSHNLLQGKIPKSL-----ANC--------------------------A 225 (486)
Q Consensus 189 --------i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l--------------------------~ 225 (486)
+.+. .+. ....++|++|++++|.+++.+|..+ ..+ .
T Consensus 253 ~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEECHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEEecCCcCcHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 0000 000 0011255666666666655555443 222 2
Q ss_pred CCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccC
Q 048443 226 VLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYF 305 (486)
Q Consensus 226 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (486)
+|++|++++|.+.... ....+++|+.|++++|. +.+.+|. .+..+++|+.+++++|.... ...
T Consensus 332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~--l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~----------- 394 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV--FTDSVFQ-GCSTLKRLQTLILQRNGLKN-FFK----------- 394 (562)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC--CCTTTTT-TCCSCSSCCEEECCSSCCCB-TTH-----------
T ss_pred cceEEEccCCCccccc--CccCCCCceEEECCCCc--cccchhh-hhcccCCCCEEECCCCCcCC-ccc-----------
Confidence 3555555555543211 11567778888887773 3333443 35667777777776663210 000
Q ss_pred CCCcceEEeecCCCccccCcccCcccEEEcccccccccCcc-chhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCC
Q 048443 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPT-SIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS 384 (486)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 384 (486)
.......+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|+++
T Consensus 395 --------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~ 458 (562)
T 3a79_B 395 --------------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458 (562)
T ss_dssp --------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECC
T ss_pred --------------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECC
Confidence 000012246788888888888863444 477788888888888888766665543 678888888
Q ss_pred CCC----------CCCCCEEeccCCccccCCCCC--CCCCCCCCccccCCcCCCCC
Q 048443 385 KNR----------LTFLEFFNATHNNLTGPIPQA--NQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 385 ~N~----------l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~~~~~~np~~c~~ 428 (486)
+|+ +++|++|++++|++++ +|.. ..+..+..+++.+||+.|+|
T Consensus 459 ~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 459 NNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 887 4577888888888884 5543 45677788899999999963
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=314.38 Aligned_cols=357 Identities=19% Similarity=0.168 Sum_probs=283.4
Q ss_pred ccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccC-CchhccccCCCCcEEEccCCCCCCCCC
Q 048443 38 GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNI-PKWLLNPSMKNFSYLNLSKNYFPRFDQ 116 (486)
Q Consensus 38 ~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~-p~~~~~~~l~~L~~L~Ls~N~l~~~~~ 116 (486)
..+|. +. ++|++|+|++|.+.+..|..|.++++|++|+++ +|.+.+.+ +..|.. +++|++|++++|.++.+
T Consensus 23 ~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~--l~~L~~L~Ls~n~l~~~-- 94 (455)
T 3v47_A 23 HQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE-QQTPGLVIRNNTFRG--LSSLIILKLDYNQFLQL-- 94 (455)
T ss_dssp SSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECC-CCSTTCEECTTTTTT--CTTCCEEECTTCTTCEE--
T ss_pred ccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECc-CCcccceECcccccc--cccCCEEeCCCCccCcc--
Confidence 34564 33 789999999999999889999999999999999 99887555 567888 99999999999999876
Q ss_pred CCCCCCcccc-cCccCeeecccCcccccCCcc--ccCCCCCCEEECcCCcCcccccch-hhhcCCCCcEEEccCcccccc
Q 048443 117 HPTVLPWTTL-STKIRHYLISKNNLTGEIPSW--ICNLSSLYVLDLSDNNLSGELLQC-LGNFSGGLSVLSLQGKNFFGT 192 (486)
Q Consensus 117 l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~i~~~~~~~-l~~~~~~L~~L~L~~n~i~~~ 192 (486)
.|..+. +++|++|++++|++++..+.. |..+++|++|++++|.+++..|.. +..++. |++|++++|.+.+.
T Consensus 95 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 95 ----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVKSI 169 (455)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBSCC
T ss_pred ----ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCccccc
Confidence 456666 899999999999998755444 899999999999999999877776 788887 99999999999998
Q ss_pred CCccccCC--CCccEEECcCCccccccCcc--------CcCCCCCCEEEccCCccccCCCccccCC---CCCCEEEcCcc
Q 048443 193 TPDTFMNG--SDLRMVDLSHNLLQGKIPKS--------LANCAVLEISDLRNNQINDTFPIWLGSL---LELNILVLIQQ 259 (486)
Q Consensus 193 ~~~~~~~l--~~L~~L~L~~N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~n 259 (486)
.+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+... ++|+.|+++++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 88888765 78999999999998654433 3366899999999999998888776554 88899998875
Q ss_pred CCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccC---cccCcccEEEcc
Q 048443 260 LPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD---KIPDILKGIILS 336 (486)
Q Consensus 260 ~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls 336 (486)
. ..+.... ...+..+.... +.....+.+..++++.+.+....+ ..+++|+.|+++
T Consensus 250 ~--~~~~~~~--~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 250 Y--NMGSSFG--HTNFKDPDNFT------------------FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp T--TTSCCTT--CCSSCCCCTTT------------------TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred c--ccccccc--hhhhccCcccc------------------cccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence 3 1111000 00000000000 000011345566666666654432 346889999999
Q ss_pred cccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCC
Q 048443 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPI 405 (486)
Q Consensus 337 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~ 405 (486)
+|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+ +++|++|++++|++++..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 999998889999999999999999999998889999999999999999998 578999999999999765
Q ss_pred CCC-CCCCCCCCccccCCcCCCCCC
Q 048443 406 PQA-NQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 406 p~~-~~~~~~~~~~~~~np~~c~~~ 429 (486)
+.. ..+..+..+++.+||+.|++|
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhHhccCCcccEEEccCCCcccCCC
Confidence 544 467788899999999999865
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=319.01 Aligned_cols=375 Identities=17% Similarity=0.134 Sum_probs=213.0
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|+ ++|.+.+..|.+|.++++|++|+|++|++.+..|..|+++++|++|+++ +|+++. +|.. . +++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~-lp~~--~--l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HNKLVK-ISCH--P--TVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC-SSCCCE-EECC--C--CCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC-CCceee-cCcc--c--cCCccE
Confidence 3445554 5555555555555555666666666665555555555556666666665 555553 3333 3 555666
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC--CEEECcCCcC--cccccchhhhcCC-
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL--YVLDLSDNNL--SGELLQCLGNFSG- 177 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~Ls~N~i--~~~~~~~l~~~~~- 177 (486)
|++++|.++.++ +|..+. +++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+..
T Consensus 95 L~L~~N~l~~~~-----~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 95 LDLSFNAFDALP-----ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp EECCSSCCSSCC-----CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred EeccCCcccccc-----chhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 666666555432 334444 5556666666665553 234445555 5666666555 4444444433220
Q ss_pred ------------------------CCcEEEccCcc-------ccccCCccccCCCCccEEECcCCccccccCccCc---C
Q 048443 178 ------------------------GLSVLSLQGKN-------FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLA---N 223 (486)
Q Consensus 178 ------------------------~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~ 223 (486)
+|+.+++++|. +.+.++ .+..+++|+.|++++|.+++..+..+. .
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence 02222222222 111111 122222222222222222211100000 0
Q ss_pred CCCCCEEEccCCccccCCCccc-----cCCCCCCEEEcCccCCCccccCChhh-------------------------hh
Q 048443 224 CAVLEISDLRNNQINDTFPIWL-----GSLLELNILVLIQQLPCFMGKLPSKY-------------------------FQ 273 (486)
Q Consensus 224 l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~ip~~~-------------------------~~ 273 (486)
.++|++|++++|.+.+..|.++ +.++.|+.++++.+. . .+|... +.
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~---~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV---F-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC---C-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccc---e-ecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 2355555555555555555555 555555555554442 1 333111 14
Q ss_pred ccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcc--c---cCcccCcccEEEcccccccccCcc-c
Q 048443 274 CWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMM--T---HDKIPDILKGIILSSNRFDGEMPT-S 347 (486)
Q Consensus 274 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~---~~~~~~~L~~L~Ls~N~l~~~~~~-~ 347 (486)
.+++|+.+++++|.........+ .-.+.++.++++.+.+.. . ....+++|+.|++++|.+++.+|. .
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~-------~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC-------GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC-------CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hCCcccEEEeECCccChhhhhhh-------ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 66778888888774322111111 112456788888887764 1 134578899999999999974665 4
Q ss_pred hhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCCC--CCCCCCC
Q 048443 348 IANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQA--NQFPTFG 415 (486)
Q Consensus 348 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~~--~~~~~~~ 415 (486)
+..+++|++|++++|++++..|..+. ++|++|++++|+ +++|++|++++|+++. +|.. ..+..+.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCccc
Confidence 88899999999999999887777664 799999999998 5688999999999994 5553 4566788
Q ss_pred CccccCCcCCCCC
Q 048443 416 YSSFNGNSRLCGK 428 (486)
Q Consensus 416 ~~~~~~np~~c~~ 428 (486)
.+.+.+||+.|+|
T Consensus 472 ~L~l~~N~~~c~c 484 (520)
T 2z7x_B 472 KIWLHTNPWDCSC 484 (520)
T ss_dssp EEECCSSCBCCCH
T ss_pred EEECcCCCCcccC
Confidence 8899999999963
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=320.93 Aligned_cols=371 Identities=19% Similarity=0.206 Sum_probs=279.0
Q ss_pred CcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 8 ELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 8 ~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
.+++++++.+.+... ..+.++.|+ ++|.+.+..|.+|+.+++|++|++++|++.+..+..|+++++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 789999998874422 234566666 8899999999999999999999999999999888889999999999999
Q ss_pred CCCccccc-CCchhccccCCCCcEEEccCCC-CCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEE
Q 048443 81 PPMKIHGN-IPKWLLNPSMKNFSYLNLSKNY-FPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVL 157 (486)
Q Consensus 81 ~~n~i~~~-~p~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 157 (486)
+|.+++. .|..+.. +++|++|++++|. +..+| +..+. +++|++|++++|++++..|..+..+++|++|
T Consensus 107 -~n~l~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 107 -GNPYQTLGVTSLFPN--LTNLQTLRIGNVETFSEIR------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp -TCCCSSSCSSCSCTT--CTTCCEEEEEESSSCCEEC------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred -CCcccccchhhhhhc--cCCccEEECCCCccccccC------HhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 9999873 5778888 9999999999998 55542 23444 8899999999999998888888877777777
Q ss_pred ECcCCcCcccccchh-hhcCCCCcEEEccCccccccC--Ccc--------------------------------------
Q 048443 158 DLSDNNLSGELLQCL-GNFSGGLSVLSLQGKNFFGTT--PDT-------------------------------------- 196 (486)
Q Consensus 158 ~Ls~N~i~~~~~~~l-~~~~~~L~~L~L~~n~i~~~~--~~~-------------------------------------- 196 (486)
++++|.+. ..|..+ ..++. |++|++++|++.+.. +..
T Consensus 178 ~l~~n~~~-~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 178 TLHLSESA-FLLEIFADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEECSBST-THHHHHHHSTTT-BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred ecccCccc-ccchhhHhhccc-ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 77777665 334333 23443 666666666665421 000
Q ss_pred ---------------------c-----------------------------cCCCCccEEECcCCccccccCccC-cCCC
Q 048443 197 ---------------------F-----------------------------MNGSDLRMVDLSHNLLQGKIPKSL-ANCA 225 (486)
Q Consensus 197 ---------------------~-----------------------------~~l~~L~~L~L~~N~l~~~~p~~~-~~l~ 225 (486)
+ ...++|+.|++++|.++ .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 0 01134556666666665 455554 4688
Q ss_pred CCCEEEccCCccccCCC---ccccCCCCCCEEEcCccCCCccccCCh--hhhhccccccccccccchhcccccccccccc
Q 048443 226 VLEISDLRNNQINDTFP---IWLGSLLELNILVLIQQLPCFMGKLPS--KYFQCWNAMKFANSSQLRYMENFLSSYFSFD 300 (486)
Q Consensus 226 ~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~ip~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 300 (486)
+|++|++++|.+.+..| ..++.+++|+.|++++| ....+|. ..+..+++|+.+++++|... ....
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~------ 404 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN---HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD------ 404 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS---CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS------
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCC---cccccccchhhhhcCCCCCEEECCCCCCc-cCCh------
Confidence 89999999998887654 34678888999999887 4445543 45788889999999888432 1111
Q ss_pred ccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCE
Q 048443 301 FYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLES 380 (486)
Q Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 380 (486)
.....+.+..++++++.+.......++.|+.|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++
T Consensus 405 -~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 405 -SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV 477 (549)
T ss_dssp -CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred -hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence 1112356788999999887666666789999999999998542 57899999999999999 6665 467899999
Q ss_pred EeCCCCC-----------CCCCCEEeccCCccccCCCC
Q 048443 381 LDLSKNR-----------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 381 L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~ 407 (486)
|++++|+ +++|++|++++|+++|.+|.
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9999998 56789999999999998874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=315.22 Aligned_cols=380 Identities=19% Similarity=0.146 Sum_probs=286.9
Q ss_pred cCcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
+.+++++++.+.+... ..+.++.|+ ++|.+.+..|..|+++++|++|+|++|++.+..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4577788877764322 234556665 777888877888888999999999999888888888888999999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC----
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL---- 154 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L---- 154 (486)
+ +|.+++..+..+.. +++|++|++++|.++.++ +|..+. +++|++|++++|++++..+..+..+++|
T Consensus 108 ~-~n~l~~l~~~~~~~--l~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 108 V-ETNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp T-TSCCCCSTTCSCTT--CTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred c-ccccccCCCccccc--cccccEEecCCCccceec-----ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 8 88888766666777 888999999988887643 455666 7888888888888876666667666666
Q ss_pred CEEECcCCcCccccc-----------------------------------------------------------------
Q 048443 155 YVLDLSDNNLSGELL----------------------------------------------------------------- 169 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~----------------------------------------------------------------- 169 (486)
+.|++++|.+++..+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 677777766553322
Q ss_pred ----------------chhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCcc-------------
Q 048443 170 ----------------QCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS------------- 220 (486)
Q Consensus 170 ----------------~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~------------- 220 (486)
..+..++. |+.|++++|.+.+ +|..+..+ +|++|++++|.+. .+|..
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESC
T ss_pred hhhhhhcchhhhhhchhhhcCcCc-ccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCC
Confidence 23334454 7778888777763 55556655 6666666666665 33321
Q ss_pred -------CcCCCCCCEEEccCCccccCC--CccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccc
Q 048443 221 -------LANCAVLEISDLRNNQINDTF--PIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMEN 291 (486)
Q Consensus 221 -------~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~ 291 (486)
...+++|++|++++|.+.+.. +..+..+++|+.|++++| ....+|.. +..+++|+.++++++.....
T Consensus 336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC---SEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred ccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC---cccccccc-ccccCCCCEEEccCCccccc
Confidence 156788999999999987654 677889999999999998 45556666 78899999999998743221
Q ss_pred cccccccccccccCCCCcceEEeecCCCccccC---cccCcccEEEccccccc-ccCccchhccCCCCeeeCCCcccCcc
Q 048443 292 FLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFD-GEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
..... ..-.+.+..++++.+.+....+ ..+++|+.|++++|.++ +.+|..+..+++|++|++++|++++.
T Consensus 412 ~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 412 SEFSV------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp TTSCT------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred cchhh------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 11000 0112467888888887765443 34789999999999998 57899999999999999999999988
Q ss_pred CchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~ 408 (486)
.|..|..+++|++|++++|+ +++|++|++++|+++|.+|..
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 89999999999999999998 568899999999999999864
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=314.53 Aligned_cols=349 Identities=19% Similarity=0.172 Sum_probs=233.8
Q ss_pred cCcccceeeeehhccCC------Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTSD------SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~~------~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
.++++++++.+.+.... .+.|+.|+ ++|.+++..|.+|+++++|++|+|++|++.. +|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 67899999988755433 34555565 8899999989999999999999999999874 5555 8999999999
Q ss_pred CCCCcccc-cCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCcc--CeeecccCcc--cccCCccccC---
Q 048443 80 FPPMKIHG-NIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKI--RHYLISKNNL--TGEIPSWICN--- 150 (486)
Q Consensus 80 ~~~n~i~~-~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L--~~L~Ls~n~l--~~~~~~~~~~--- 150 (486)
+ +|.+++ .+|..+.. +++|++|++++|.++.. .+. +++| ++|++++|.+ ++..|..+..
T Consensus 98 ~-~N~l~~~~~p~~~~~--l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 98 S-FNAFDALPICKEFGN--MSQLKFLGLSTTHLEKS---------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp C-SSCCSSCCCCGGGGG--CTTCCEEEEEESSCCGG---------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred c-CCccccccchhhhcc--CCcceEEEecCcccchh---------hccccccceeeEEEeeccccccccccccccccccc
Confidence 9 999997 47899999 99999999999998752 233 6777 9999999999 5555555544
Q ss_pred -----------------------CCCCCEEECcCCc-------CcccccchhhhcCC-----------------------
Q 048443 151 -----------------------LSSLYVLDLSDNN-------LSGELLQCLGNFSG----------------------- 177 (486)
Q Consensus 151 -----------------------l~~L~~L~Ls~N~-------i~~~~~~~l~~~~~----------------------- 177 (486)
+++|+.|++++|. +.+.++ .+..++.
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHh
Confidence 4455555555553 221111 1222211
Q ss_pred ---CCcEEEccCccccccCCccc-----cCCCCccEEECcCCccccccC-cc-------------------------CcC
Q 048443 178 ---GLSVLSLQGKNFFGTTPDTF-----MNGSDLRMVDLSHNLLQGKIP-KS-------------------------LAN 223 (486)
Q Consensus 178 ---~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p-~~-------------------------~~~ 223 (486)
+|++|++++|++.+.+|..+ ..+++|+.+++++|.+ .+| .. +..
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 37788888888877777766 6666666666666665 222 11 145
Q ss_pred CCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCCh--hhhhccccccccccccchhccccccccccccc
Q 048443 224 CAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPS--KYFQCWNAMKFANSSQLRYMENFLSSYFSFDF 301 (486)
Q Consensus 224 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 301 (486)
+++|++|++++|.+++..|.+++.+++|+.|++++| ....++. ..+..+++|+.+++++|.........
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------ 393 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN---QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------ 393 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS---CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC------
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCC---ccCccccchHHHhhCCCCCEEECCCCcCCcccccc------
Confidence 666677777777766666666666777777777666 2332222 23556666666666665321101000
Q ss_pred cccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEE
Q 048443 302 YRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESL 381 (486)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 381 (486)
....++.|+.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|
T Consensus 394 ---------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 394 ---------------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp ---------------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred ---------------------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 012245677777777777665555443 56777777777777 566655577777777
Q ss_pred eCCCCC-----------CCCCCEEeccCCccccCCC
Q 048443 382 DLSKNR-----------LTFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 382 ~Ls~N~-----------l~~L~~L~ls~N~l~~~~p 406 (486)
++++|+ +++|++|++++|+++|.++
T Consensus 450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 777776 3456777778888877665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=305.63 Aligned_cols=333 Identities=18% Similarity=0.138 Sum_probs=276.9
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
-+.++.+++++. .+|..+. +++++|+++ +|.+++..+..|.. +++|++|+|++|.++.+ .|..+. ++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~------~~~~~~~l~ 80 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLG-KNRIKTLNQDEFAS--FPHLEELELNENIVSAV------EPGAFNNLF 80 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECC-SSCCCEECTTTTTT--CTTCCEEECTTSCCCEE------CTTTTTTCT
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECC-CCccceECHhHccC--CCCCCEEECCCCccCEe------ChhhhhCCc
Confidence 357888888854 4565553 689999999 99999998999999 99999999999999886 455666 89
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|+|++|++++..+..|.++++|++|++++|++.+..+..|..+++ |++|++++|.+.+..+..|..+++|++|++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 9999999999999766677899999999999999999888888999997 999999999999999999999999999999
Q ss_pred cCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchh
Q 048443 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~ 288 (486)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|+++++. ..+.+|...+.. .+|+.++++++
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~-~~L~~L~l~~n-- 234 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP--YLDTMTPNCLYG-LNLTSLSITHC-- 234 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT--TCCEECTTTTTT-CCCSEEEEESS--
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc--cccccCcccccC-ccccEEECcCC--
Confidence 9999997666789999999999999999998888899999999999999864 566666654432 25555555544
Q ss_pred ccccccccccccccccCCCCcceEEeecCCCcccc---CcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccC
Q 048443 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH---DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 365 (486)
.+.... ...+++|+.|+|++|.+++..+..|..+++|++|+|++|+++
T Consensus 235 -----------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 235 -----------------------------NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp -----------------------------CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred -----------------------------cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 333222 223578999999999999888888999999999999999999
Q ss_pred ccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCC
Q 048443 366 GHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 366 ~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~ 429 (486)
+..|..|..+++|++|++++|+ +++|++|++++|++++.++....+.......+.++...|..|
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 8889999999999999999998 347889999999998766533222233345567777888654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=305.89 Aligned_cols=348 Identities=16% Similarity=0.152 Sum_probs=233.4
Q ss_pred cCcccceeeeehhccCC------Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTSD------SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~~------~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
.++++++++.+.+.... .+.|+.|+ ++|.+++..|.+|.++++|++|+|++|++.. +|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEEC
Confidence 67899999988854432 24555565 8899999999999999999999999999874 5555 8999999999
Q ss_pred CCCCccccc-CCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCcc--CeeecccCcc--cccCCccccC---
Q 048443 80 FPPMKIHGN-IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKI--RHYLISKNNL--TGEIPSWICN--- 150 (486)
Q Consensus 80 ~~~n~i~~~-~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L--~~L~Ls~n~l--~~~~~~~~~~--- 150 (486)
+ +|.+++. .|..+.+ +++|++|++++|.++.. .+. +++| ++|++++|.+ ++..|..+..
T Consensus 129 s-~N~l~~l~~p~~~~~--l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 129 S-FNDFDVLPVCKEFGN--LTKLTFLGLSAAKFRQL---------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp C-SSCCSBCCCCGGGGG--CTTCCEEEEECSBCCTT---------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred C-CCCccccCchHhhcc--cCcccEEecCCCccccC---------chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 9 9999974 5789999 99999999999998753 222 4556 9999999999 6666666554
Q ss_pred -----------------------CCCCCEEECcCCcC----------------------------ccc----ccchhhhc
Q 048443 151 -----------------------LSSLYVLDLSDNNL----------------------------SGE----LLQCLGNF 175 (486)
Q Consensus 151 -----------------------l~~L~~L~Ls~N~i----------------------------~~~----~~~~l~~~ 175 (486)
+++|+.|++++|+. ++. .+..+ ..
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~ 275 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WP 275 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TT
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hc
Confidence 34566666666531 100 00111 11
Q ss_pred CCCCcEEEccCccccccCCccc-----cCC--------------------------CCccEEECcCCccccccCccCcCC
Q 048443 176 SGGLSVLSLQGKNFFGTTPDTF-----MNG--------------------------SDLRMVDLSHNLLQGKIPKSLANC 224 (486)
Q Consensus 176 ~~~L~~L~L~~n~i~~~~~~~~-----~~l--------------------------~~L~~L~L~~N~l~~~~p~~~~~l 224 (486)
.. |++|++++|.+.+.+|..+ ..+ .+|++|++++|.+... + ....+
T Consensus 276 ~~-L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~~~~l 352 (562)
T 3a79_B 276 RP-VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM-V-CPPSP 352 (562)
T ss_dssp SS-EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSC
T ss_pred cc-ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc-c-CccCC
Confidence 23 8888888888887777655 222 2356666666665421 1 12678
Q ss_pred CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCCh--hhhhccccccccccccchhcccccccccccccc
Q 048443 225 AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPS--KYFQCWNAMKFANSSQLRYMENFLSSYFSFDFY 302 (486)
Q Consensus 225 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 302 (486)
++|++|++++|.+++..|.++..+++|+.|++++| ....++. ..+..+++|+.+++++|.........
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------- 422 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN---GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR------- 422 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS---CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-------
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCC---CcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-------
Confidence 88899999999888888888888889999998887 4555553 34677888888888877432101110
Q ss_pred ccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEe
Q 048443 303 RYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382 (486)
Q Consensus 303 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 382 (486)
....+++|+.|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|+
T Consensus 423 --------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 423 --------------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479 (562)
T ss_dssp --------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred --------------------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence 011134455666666655544444332 45566666666555 4444444555666666
Q ss_pred CCCCC-----------CCCCCEEeccCCccccCCC
Q 048443 383 LSKNR-----------LTFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 383 Ls~N~-----------l~~L~~L~ls~N~l~~~~p 406 (486)
+++|+ +++|++|++++|+++|.+|
T Consensus 480 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 66555 2345566666777776655
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=286.27 Aligned_cols=324 Identities=19% Similarity=0.152 Sum_probs=221.6
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|+ +++.+....+..|..+++|++|++++|.+.+..+..|..+++|++|+++ +|.+++..|..+.. +++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQN--VPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTT--CTTCCE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcC--CCCCCE
Confidence 4455555 5555554444446788888888888888887777788888888888888 88888887888888 888888
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEE
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L 182 (486)
|++++|.++.+|. ..+. +++|++|++++|++++..+..|..+++|++|++++|++++. .+..++. |+.|
T Consensus 122 L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~-L~~L 191 (390)
T 3o6n_A 122 LVLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS-LFHA 191 (390)
T ss_dssp EECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT-CSEE
T ss_pred EECCCCccCcCCH------HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc-ccee
Confidence 8888888887532 2234 78888888888888877777788888888888888888753 2455665 8888
Q ss_pred EccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCC
Q 048443 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPC 262 (486)
Q Consensus 183 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~ 262 (486)
++++|.+.+. ...++|++|++++|.++.. |.. ..++|++|++++|.+++. .++..+++|+.|++++|
T Consensus 192 ~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n--- 258 (390)
T 3o6n_A 192 NVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN--- 258 (390)
T ss_dssp ECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS---
T ss_pred eccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCC---
Confidence 8888887643 3345788888888888744 332 347888888888888753 57788888888888887
Q ss_pred ccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc
Q 048443 263 FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342 (486)
Q Consensus 263 ~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 342 (486)
....++...|..++ +|+.|++++|+++
T Consensus 259 ~l~~~~~~~~~~l~----------------------------------------------------~L~~L~L~~n~l~- 285 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQ----------------------------------------------------RLERLYISNNRLV- 285 (390)
T ss_dssp CCCEEESGGGTTCS----------------------------------------------------SCCEEECCSSCCC-
T ss_pred cCCCcChhHccccc----------------------------------------------------cCCEEECCCCcCc-
Confidence 33333333344433 4555555555555
Q ss_pred cCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCCCCCCCCCC
Q 048443 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIPQANQFPTF 414 (486)
Q Consensus 343 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p~~~~~~~~ 414 (486)
.+|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+ +++|++|++++|++++.... ..+..+
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~ 363 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR-ALFRNV 363 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHH-HHTTTC
T ss_pred ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhHH-HHHHHH
Confidence 23444445555555555555555 344445555555555555555 34566677777777654322 234455
Q ss_pred CCccccCCcCCCCCC
Q 048443 415 GYSSFNGNSRLCGKP 429 (486)
Q Consensus 415 ~~~~~~~np~~c~~~ 429 (486)
....+.+++..|.++
T Consensus 364 ~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 364 ARPAVDDADQHCKID 378 (390)
T ss_dssp CTTTBCCCCSCCCTT
T ss_pred HhhcccccCceeccc
Confidence 556677788888654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=300.02 Aligned_cols=323 Identities=19% Similarity=0.156 Sum_probs=232.8
Q ss_pred hhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEE
Q 048443 26 FLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYL 104 (486)
Q Consensus 26 ~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L 104 (486)
.++.+. ++|.+.+..+..|+.+++|++|+|++|.+.+..|..|+.+++|++|+|+ +|.+++..|..|.. +++|++|
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L 128 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQN--VPLLTVL 128 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTT--CTTCCEE
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECC-CCcCCCCCHHHHcC--CCCCCEE
Confidence 344444 5555555555557788899999999999888888888899999999998 88888888888888 8999999
Q ss_pred EccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEE
Q 048443 105 NLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLS 183 (486)
Q Consensus 105 ~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~ 183 (486)
+|++|.++.+|. ..+. +++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..++. |+.|+
T Consensus 129 ~L~~n~l~~l~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~-L~~L~ 198 (597)
T 3oja_B 129 VLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS-LFHAN 198 (597)
T ss_dssp ECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTT-CSEEE
T ss_pred EeeCCCCCCCCH------HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhh-hhhhh
Confidence 999998887632 3344 788999999999998877778888999999999999888542 445665 88899
Q ss_pred ccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCc
Q 048443 184 LQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263 (486)
Q Consensus 184 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 263 (486)
+++|.+.+. ...++|+.|++++|.++.. +..+ .++|++|++++|.+++ +.++..+++|+.|++++|.
T Consensus 199 l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~--- 265 (597)
T 3oja_B 199 VSYNLLSTL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE--- 265 (597)
T ss_dssp CCSSCCSEE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC---
T ss_pred cccCccccc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCc---
Confidence 998888653 3446788999999988744 3322 3688899999998875 4678888888888888873
Q ss_pred cccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccccc
Q 048443 264 MGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE 343 (486)
Q Consensus 264 ~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 343 (486)
...++...|..+ ++|+.|+|++|.+++
T Consensus 266 l~~~~~~~~~~l----------------------------------------------------~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 266 LEKIMYHPFVKM----------------------------------------------------QRLERLYISNNRLVA- 292 (597)
T ss_dssp CCEEESGGGTTC----------------------------------------------------SSCCEEECTTSCCCE-
T ss_pred cCCCCHHHhcCc----------------------------------------------------cCCCEEECCCCCCCC-
Confidence 322322223333 446666666666663
Q ss_pred CccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCCCCCCCCCCC
Q 048443 344 MPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIPQANQFPTFG 415 (486)
Q Consensus 344 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p~~~~~~~~~ 415 (486)
+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|+ +++|+.|++++|+++|..+. ..+..+.
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~ 370 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR-ALFRNVA 370 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHH-HHTTTCC
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHH-HHHHHHh
Confidence 4555555666666666666666 455556666666666666666 45677788888888765432 2455566
Q ss_pred CccccCCcCCCCCC
Q 048443 416 YSSFNGNSRLCGKP 429 (486)
Q Consensus 416 ~~~~~~np~~c~~~ 429 (486)
...+.+++..|+.+
T Consensus 371 ~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 371 RPAVDDADQHCKID 384 (597)
T ss_dssp TTTBCCCCCCCCTT
T ss_pred hhccccccccCCcc
Confidence 66778888889754
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=275.84 Aligned_cols=258 Identities=30% Similarity=0.494 Sum_probs=170.1
Q ss_pred CCCCeeccCCCCcccc--cCCchhccccCCCCcEEEccC-CCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc
Q 048443 72 SSLERLDTFPPMKIHG--NIPKWLLNPSMKNFSYLNLSK-NYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW 147 (486)
Q Consensus 72 ~~L~~L~L~~~n~i~~--~~p~~~~~~~l~~L~~L~Ls~-N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~ 147 (486)
.+++.|+++ +|.+.+ .+|..+.. +++|++|++++ |.+... +|..+. +++|++|++++|++++.+|..
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~l~~--l~~L~~L~L~~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGP------IPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGGGGG--CTTCSEEEEEEETTEESC------CCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECC-CCCccCCcccChhHhC--CCCCCeeeCCCCCccccc------CChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 355566666 566655 55556655 66666666653 555433 344444 566666666666666666666
Q ss_pred ccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC-CccEEECcCCccccccCccCcCCCC
Q 048443 148 ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS-DLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 148 ~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
|..+++|++|++++|.+++..|..+..++. |++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..++
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCC-CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 667777777777777776666666666665 77777777777666666666666 677777777777766666666665
Q ss_pred CCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCC
Q 048443 227 LEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFP 306 (486)
Q Consensus 227 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (486)
|++|++++|.+.+..|..+..++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------------------------------- 221 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDK--------------------------------------------------------- 221 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTS---------------------------------------------------------
T ss_pred ccEEECcCCcccCcCCHHHhcCC---------------------------------------------------------
Confidence 77777777776655555444433
Q ss_pred CCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
+|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|..+++|++|+++
T Consensus 222 ----------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-- 276 (313)
T 1ogq_A 222 ----------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS-- 276 (313)
T ss_dssp ----------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC--
T ss_pred ----------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc--
Confidence 355555555666544444 6667778888888888877777777776666655555
Q ss_pred CCCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCCCCCCC
Q 048443 387 RLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKEC 434 (486)
Q Consensus 387 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~~~~~C 434 (486)
+|+++|.+|....+..+..+.+.+||++||.|.. .|
T Consensus 277 -----------~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 277 -----------FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp -----------SSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred -----------CCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 4457777777777777888888899999987766 46
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=292.27 Aligned_cols=380 Identities=20% Similarity=0.115 Sum_probs=286.5
Q ss_pred Ccccceeeeehhcc---CC---Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 8 ELTRLTILLFYLMT---SD---SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 8 ~l~~l~~~~~~~~~---~~---~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
.+++|+++++.+.. .. .+.|+.|+ ++|+|++..|.+|.++++|++|+|++|++.+..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56889999887432 22 34566666 8899999888899999999999999999998888899999999999999
Q ss_pred CCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC----
Q 048443 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY---- 155 (486)
Q Consensus 81 ~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---- 155 (486)
+|++++..+..|.+ +++|++|++++|.++.++ .|..+. +++|++|++++|++++..+..|..+.+++
T Consensus 133 -~N~l~~l~~~~~~~--L~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 133 -ETNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp -TSCCCCSTTCCCTT--CTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred -CCcCCCCChhhhhc--CcccCeeccccCccccCC-----CchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 99999888888988 999999999999998764 456666 89999999999999977776665544332
Q ss_pred EEECcCCcCcccccc-----------------------------------------------------------------
Q 048443 156 VLDLSDNNLSGELLQ----------------------------------------------------------------- 170 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~----------------------------------------------------------------- 170 (486)
.++++.|.++...+.
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 455555543311100
Q ss_pred --------------------------------------hhhhcCCCCcEEEccCccccccCCc-----------------
Q 048443 171 --------------------------------------CLGNFSGGLSVLSLQGKNFFGTTPD----------------- 195 (486)
Q Consensus 171 --------------------------------------~l~~~~~~L~~L~L~~n~i~~~~~~----------------- 195 (486)
.+.... .++.|++.+|.+.+..+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCC-CCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccch-hhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 011111 266677776665443221
Q ss_pred --cccCCCCccEEECcCCcccc--ccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhh
Q 048443 196 --TFMNGSDLRMVDLSHNLLQG--KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKY 271 (486)
Q Consensus 196 --~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~ 271 (486)
.+..+++|+.|++++|.+.. ..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++..+. .....+...
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~ 440 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN--LKQMSEFSV 440 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSE--EESTTSSCT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcc--ccccccccc
Confidence 23357889999999998753 345566778899999999888764 45567788899999888753 445556666
Q ss_pred hhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcc----ccCcccCcccEEEcccccccccCccc
Q 048443 272 FQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMM----THDKIPDILKGIILSSNRFDGEMPTS 347 (486)
Q Consensus 272 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~~~~~~~ 347 (486)
|..+..+..++++.+......... ....+.+..++++++.... .....+++|+.|+|++|++++..|..
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~-------~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGI-------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTT-------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccccccccccccccccccccccc-------cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 788888888888877432111111 1122455677777665432 22344788999999999999989999
Q ss_pred hhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------C-CCCCEEeccCCccccCCC
Q 048443 348 IANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------L-TFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 348 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l-~~L~~L~ls~N~l~~~~p 406 (486)
|.++++|++|+|++|+|++..|..|.++++|++|||++|+ + ++|++|++++|+++|.+.
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999998889999999999999999998 2 579999999999998775
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=283.02 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=107.0
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
++|.+++. | .++.+++|++|++++|++.+. | ++.+++|++|+++ +|.+++. + +.. +++|++|++++|++
T Consensus 50 s~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls-~N~l~~~-~--~~~--l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 50 HNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACD-SNKLTNL-D--VTP--LTKLTYLNCDTNKL 118 (457)
T ss_dssp CSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECC-SSCCSCC-C--CTT--CTTCCEEECCSSCC
T ss_pred cCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECc-CCCCcee-e--cCC--CCcCCEEECCCCcC
Confidence 44555542 3 456666666666666665553 2 5566666666666 6666553 2 444 66666666666666
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.+| +. +++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..++. |++|++++|+++
T Consensus 119 ~~l~---------~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~ 183 (457)
T 3bz5_A 119 TKLD---------VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQ-LTTLDCSFNKIT 183 (457)
T ss_dssp SCCC---------CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTT-CCEEECCSSCCC
T ss_pred Ceec---------CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCc-CCEEECCCCccc
Confidence 5531 22 4566666666666654 22 555566666666666433233 2444444 666666666665
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+. | +..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| ++.+++|+.|++++|
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 42 2 45555666666666666543 25555666666666666654 23 555566666666655
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=264.93 Aligned_cols=281 Identities=19% Similarity=0.168 Sum_probs=222.8
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCC
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
++.+. .+|..+. +++++|++++|++.+..+..|.++++|++|+++ +|.+++..|..+.. +++|++|++++|.++
T Consensus 40 ~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~ 113 (330)
T 1xku_A 40 DLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAP--LVKLERLYLSKNQLK 113 (330)
T ss_dssp TSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTT--CTTCCEEECCSSCCS
T ss_pred CCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECC-CCcCCeeCHHHhcC--CCCCCEEECCCCcCC
Confidence 33443 4665554 689999999999888888889999999999999 99999888999988 999999999999998
Q ss_pred CCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc--cccchhhhcCCCCcEEEccCcccc
Q 048443 113 RFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG--ELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 113 ~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
++|. .+ .++|++|++++|++++..+..|.++++|++|++++|.+.. ..+..+..++. |++|++++|.++
T Consensus 114 ~l~~-------~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~ 184 (330)
T 1xku_A 114 ELPE-------KM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADTNIT 184 (330)
T ss_dssp BCCS-------SC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CCEEECCSSCCC
T ss_pred ccCh-------hh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-cCEEECCCCccc
Confidence 7643 22 3789999999999997777788999999999999999863 56777888887 999999999987
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
.. |..+. ++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.++..+++|+.|++++| ....+|..
T Consensus 185 ~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~lp~~ 258 (330)
T 1xku_A 185 TI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN---KLVKVPGG 258 (330)
T ss_dssp SC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS---CCSSCCTT
T ss_pred cC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC---cCccCChh
Confidence 54 44333 78999999999999887888999999999999999998887778888899999998887 33455543
Q ss_pred hhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhc
Q 048443 271 YFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIAN 350 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 350 (486)
. . .+++|+.|++++|.+++..+..|..
T Consensus 259 l-~----------------------------------------------------~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 259 L-A----------------------------------------------------DHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp T-T----------------------------------------------------TCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred h-c----------------------------------------------------cCCCcCEEECCCCcCCccChhhcCC
Confidence 1 1 1356888888888888665555543
Q ss_pred ------cCCCCeeeCCCcccCc--cCchhccCCCCCCEEeCCCCC
Q 048443 351 ------LKGLQVLGLASNNLQG--HIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 351 ------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
...++.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3678888999998863 566788888888888888875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.27 Aligned_cols=302 Identities=20% Similarity=0.153 Sum_probs=251.0
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.++++++|++++|.+....+..|..+++|++|+++ +|.+++..+..+.. +++|++|++++|.++.+ .|..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYL------PPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTT--CTTCCEEECCSSCCCCC------CTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECC-CCcccccChhhccC--CCCcCEEECCCCCCCcC------CHHHh
Confidence 46899999999999877766678999999999999 99999888889988 99999999999999987 34555
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCcc
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 204 (486)
. +++|++|++++|+++...+..|..+++|++|++++|.+++..+..+..++. |++|++++|.+++. .+..+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEEECCSSCCSBC---CGGGCTTCS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC-CCEEECCCCcCCcc---ccccccccc
Confidence 5 899999999999999555555789999999999999999877778888887 99999999999875 355678999
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
+|++++|.+++. ...++|++|++++|.+..... ...++|+.|++++|. ...++.
T Consensus 190 ~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~---l~~~~~--------------- 243 (390)
T 3o6n_A 190 HANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNN---LTDTAW--------------- 243 (390)
T ss_dssp EEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSC---CCCCGG---------------
T ss_pred eeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCC---CcccHH---------------
Confidence 999999988742 345689999999999975432 224788888888863 111110
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
...+++|+.|++++|.+++..|..+..+++|++|++++|++
T Consensus 244 ---------------------------------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 244 ---------------------------------------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp ---------------------------------------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred ---------------------------------------HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 01146799999999999988899999999999999999999
Q ss_pred CccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCC
Q 048443 365 QGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 365 ~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~ 428 (486)
+ .+|..+..+++|++|++++|+ +++|++|++++|+++.. | ...+..+..+++.+||+.|++
T Consensus 285 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 285 V-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp C-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred c-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 9 456667889999999999999 46899999999999865 3 346778889999999999953
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=278.17 Aligned_cols=227 Identities=21% Similarity=0.239 Sum_probs=152.5
Q ss_pred hhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEE
Q 048443 26 FLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYL 104 (486)
Q Consensus 26 ~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L 104 (486)
.++.|. .++.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|+++ +|.+.+..+ +.. +++|++|
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~-~n~l~~~~~--~~~--l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIADITP--LAN--LTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEE
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECC-CCccccChh--hcC--CCCCCEE
Confidence 444444 4444443 45 46777888888888888766544 7788888888888 787776554 666 8888888
Q ss_pred EccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEE
Q 048443 105 NLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLS 183 (486)
Q Consensus 105 ~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~ 183 (486)
++++|.++.++. +. +++|++|++++|.+++ ++ .+..+++|+.|+++ |.+.+.. .+..++. |++|+
T Consensus 118 ~L~~n~l~~~~~--------~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~-L~~L~ 183 (466)
T 1o6v_A 118 TLFNNQITDIDP--------LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTT-LERLD 183 (466)
T ss_dssp ECCSSCCCCCGG--------GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTT-CCEEE
T ss_pred ECCCCCCCCChH--------HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCC-CCEEE
Confidence 888888777532 33 6788888888888774 33 47777777777775 3444222 2666665 77777
Q ss_pred ccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCc
Q 048443 184 LQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263 (486)
Q Consensus 184 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 263 (486)
+++|.+.+. ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+.+. ..+..+++|+.|++++| .
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n---~ 254 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN---Q 254 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS---C
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCC---c
Confidence 777777654 246677777777777777775443 56677777777777777643 35667777777777776 3
Q ss_pred cccCChhhhhccccccccccccc
Q 048443 264 MGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 264 ~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
...++. +..+++|+.++++++
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGAN 275 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSS
T ss_pred cccchh--hhcCCCCCEEECCCC
Confidence 333333 566677777777666
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=274.83 Aligned_cols=358 Identities=20% Similarity=0.180 Sum_probs=240.6
Q ss_pred ccCcccceeeeehhccCCCh------hhhhhc-cCCcccccCCcCCCCCCCC-------------CEeeCcCCCCCCCCc
Q 048443 6 CSELTRLTILLFYLMTSDSP------FLDRLQ-RLSDFSGQIPPSLGNLNQL-------------QWLDLAFNNFLRELP 65 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~~~~~------~l~~L~-~~n~~~~~~p~~~~~l~~L-------------~~L~Ls~n~~~~~~~ 65 (486)
-..++.++++.+.+ +..|+ .++.|+ +.|.+.|.+|.+++++++| ++|++++|++.+. |
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 35677788877765 44443 344444 7788889999999888764 8999999987653 3
Q ss_pred ccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC
Q 048443 66 ASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP 145 (486)
Q Consensus 66 ~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~ 145 (486)
. -.++|++|+++ +|.+++ +|.. +++|++|++++|+++.+|. . .++|++|++++|++++ +|
T Consensus 88 ~---~~~~L~~L~l~-~n~l~~-lp~~-----~~~L~~L~l~~n~l~~l~~----~-----~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 88 E---LPPHLESLVAS-CNSLTE-LPEL-----PQSLKSLLVDNNNLKALSD----L-----PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp S---CCTTCSEEECC-SSCCSS-CCCC-----CTTCCEEECCSSCCSCCCS----C-----CTTCCEEECCSSCCSS-CC
T ss_pred C---CcCCCCEEEcc-CCcCCc-cccc-----cCCCcEEECCCCccCcccC----C-----CCCCCEEECcCCCCCC-Cc
Confidence 3 23789999999 898887 5542 6789999999999887654 1 2689999999999995 77
Q ss_pred ccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCC
Q 048443 146 SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCA 225 (486)
Q Consensus 146 ~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 225 (486)
.|.++++|++|++++|++++ +|..+ . +|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .+
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~~---~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 215 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDLP---P-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PL 215 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CT
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCCc---c-cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cC
Confidence 59999999999999999985 55543 2 39999999999987 45 58899999999999999985 4543 25
Q ss_pred CCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccC
Q 048443 226 VLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYF 305 (486)
Q Consensus 226 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (486)
+|++|++++|.+. .+| .++.+++|+.|++++| ....+|.. .++|+.+++++|.... ....
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N---~l~~l~~~----~~~L~~L~l~~N~l~~-----------l~~~ 275 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN---LLKTLPDL----PPSLEALNVRDNYLTD-----------LPEL 275 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS---CCSSCCSC----CTTCCEEECCSSCCSC-----------CCCC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC---cCCccccc----ccccCEEECCCCcccc-----------cCcc
Confidence 8999999999998 556 4889999999999998 44456642 3678888888874321 1112
Q ss_pred CCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCC
Q 048443 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385 (486)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 385 (486)
++.+..++++++.+... +..+++|+.|++++|.+++ ++. ..++|++|++++|++++ +|.. +++|++|++++
T Consensus 276 ~~~L~~L~ls~N~l~~l-~~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGL-SELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 346 (454)
T ss_dssp CTTCCEEECCSSCCSEE-SCCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred cCcCCEEECcCCccCcc-cCcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence 35677788887776542 2335678888888888874 222 12478888888888885 5543 47788888888
Q ss_pred CCC-------CCCCEEeccCCcccc--CCCCCC-CC-------------CCCCCccccCCcCCC
Q 048443 386 NRL-------TFLEFFNATHNNLTG--PIPQAN-QF-------------PTFGYSSFNGNSRLC 426 (486)
Q Consensus 386 N~l-------~~L~~L~ls~N~l~~--~~p~~~-~~-------------~~~~~~~~~~np~~c 426 (486)
|++ ++|++|++++|++++ .+|... .+ ..++.+++.+|+...
T Consensus 347 N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 347 NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 873 467888888888887 566541 11 456677777887654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=267.26 Aligned_cols=286 Identities=17% Similarity=0.174 Sum_probs=225.7
Q ss_pred hhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEE
Q 048443 27 LDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLN 105 (486)
Q Consensus 27 l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~ 105 (486)
++.++ +++.+. .+|..+. +++++|++++|++.+..+..|.++++|++|+++ +|.+++..|..+.. +++|++|+
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~ 108 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSP--LRKLQKLY 108 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGSTT--CTTCCEEE
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECC-CCccCccCHhHhhC--cCCCCEEE
Confidence 34444 445554 5676664 689999999999888888889999999999999 99999888889988 99999999
Q ss_pred ccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc--cccchhhhcCCCCcEEE
Q 048443 106 LSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG--ELLQCLGNFSGGLSVLS 183 (486)
Q Consensus 106 Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~~~~~L~~L~ 183 (486)
+++|.++.+|. .+ .++|++|++++|++++..+..|.++++|++|++++|.++. ..+..+..+ . |++|+
T Consensus 109 L~~n~l~~l~~-------~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~-L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVEIPP-------NL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K-LNYLR 178 (332)
T ss_dssp CCSSCCCSCCS-------SC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C-CSCCB
T ss_pred CCCCcCCccCc-------cc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c-cCEEE
Confidence 99999987643 22 2789999999999997666778999999999999999863 556667666 4 99999
Q ss_pred ccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCc
Q 048443 184 LQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263 (486)
Q Consensus 184 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 263 (486)
+++|.+++. |..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.++..+++|+.|++++| .
T Consensus 179 l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N---~ 252 (332)
T 2ft3_A 179 ISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN---K 252 (332)
T ss_dssp CCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS---C
T ss_pred CcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC---c
Confidence 999999764 44443 68999999999999777788999999999999999998888888889999999999887 3
Q ss_pred cccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccccc
Q 048443 264 MGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE 343 (486)
Q Consensus 264 ~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 343 (486)
...+|.. +.. +++|+.|++++|.+++.
T Consensus 253 l~~lp~~-l~~----------------------------------------------------l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 253 LSRVPAG-LPD----------------------------------------------------LKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCBCCTT-GGG----------------------------------------------------CTTCCEEECCSSCCCBC
T ss_pred CeecChh-hhc----------------------------------------------------CccCCEEECCCCCCCcc
Confidence 4455543 111 35688888888888866
Q ss_pred Cccchhc------cCCCCeeeCCCcccC--ccCchhccCCCCCCEEeCCCCC
Q 048443 344 MPTSIAN------LKGLQVLGLASNNLQ--GHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 344 ~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+..|.. ...|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6665554 356888999999887 5777788889999999998875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=272.33 Aligned_cols=249 Identities=26% Similarity=0.389 Sum_probs=217.4
Q ss_pred CCCCEeeCcCCCCCC--CCcccccCCCCCCeeccCCC-CcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcc
Q 048443 48 NQLQWLDLAFNNFLR--ELPASIGSLSSLERLDTFPP-MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT 124 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~~-n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~ 124 (486)
.+++.|+|++|++.+ .+|..|..+++|++|+++ + |.+.+.+|..+.. +++|++|++++|.++.. +|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~-~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~------~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAIAK--LTQLHYLYITHTNVSGA------IPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEE-EETTEESCCCGGGGG--CTTCSEEEEEEECCEEE------CCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCC-CCCcccccCChhHhc--CCCCCEEECcCCeeCCc------CCHH
Confidence 579999999999998 899999999999999998 6 8999999999999 99999999999999844 5666
Q ss_pred cc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCc
Q 048443 125 TL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203 (486)
Q Consensus 125 ~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 203 (486)
+. +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+..+|++|++++|++.+..|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 66 899999999999999999999999999999999999999899999999983499999999999999999999887 9
Q ss_pred cEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcccccccccc
Q 048443 204 RMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283 (486)
Q Consensus 204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~ 283 (486)
++|++++|.+++..|..+..+++|++|++++|.+++..|. +..+
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l----------------------------------- 243 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS----------------------------------- 243 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC-----------------------------------
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc-----------------------------------
Confidence 9999999999998999999999999999999999754443 2222
Q ss_pred ccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcc
Q 048443 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
++|++|++++|.+++.+|..+..+++|++|+|++|+
T Consensus 244 --------------------------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 244 --------------------------------------------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp --------------------------------------------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred --------------------------------------------CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 447778888888887888888888888888888888
Q ss_pred cCccCchhccCCCCCCEEeCCCCC
Q 048443 364 LQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 364 l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+++.+|.. ..+++|+.|++++|+
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccccCCCC-ccccccChHHhcCCC
Confidence 88877765 666777777666665
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=273.56 Aligned_cols=330 Identities=24% Similarity=0.255 Sum_probs=257.5
Q ss_pred ccCcccceeeeehhcc----CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 6 CSELTRLTILLFYLMT----SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~----~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
+.+++.+++..+.+.. ...+.++.|+ ++|.+.+..| +.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 4567777777655322 1234556665 7788877654 9999999999999999887655 9999999999999
Q ss_pred CCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEEC
Q 048443 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDL 159 (486)
Q Consensus 81 ~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 159 (486)
+|.+++..+ +.. +++|++|++++|.++.++ . +. +++|++|+++ |.+.+. + .+..+++|+.|++
T Consensus 121 -~n~l~~~~~--~~~--l~~L~~L~l~~n~l~~~~-------~-~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l 184 (466)
T 1o6v_A 121 -NNQITDIDP--LKN--LTNLNRLELSSNTISDIS-------A-LSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDI 184 (466)
T ss_dssp -SSCCCCCGG--GTT--CTTCSEEEEEEEEECCCG-------G-GTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEEC
T ss_pred -CCCCCCChH--HcC--CCCCCEEECCCCccCCCh-------h-hccCCcccEeecC-CcccCc-h-hhccCCCCCEEEC
Confidence 999987644 777 999999999999998753 2 33 7899999996 555533 2 3889999999999
Q ss_pred cCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 160 SDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 160 s~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
++|.+++. ..+..++. |++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 185 ~~n~l~~~--~~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CSSCCCCC--GGGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred cCCcCCCC--hhhccCCC-CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence 99998853 35778887 9999999999987655 67789999999999999853 468889999999999999987
Q ss_pred CCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCC
Q 048443 240 TFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319 (486)
Q Consensus 240 ~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 319 (486)
..+ +..+++|+.|++++| ....+|. +..+++|+.++++++.... .
T Consensus 258 ~~~--~~~l~~L~~L~l~~n---~l~~~~~--~~~l~~L~~L~L~~n~l~~-~--------------------------- 302 (466)
T 1o6v_A 258 LAP--LSGLTKLTELKLGAN---QISNISP--LAGLTALTNLELNENQLED-I--------------------------- 302 (466)
T ss_dssp CGG--GTTCTTCSEEECCSS---CCCCCGG--GTTCTTCSEEECCSSCCSC-C---------------------------
T ss_pred chh--hhcCCCCCEEECCCC---ccCcccc--ccCCCccCeEEcCCCcccC-c---------------------------
Confidence 655 888999999999998 4444554 6778888888887763211 0
Q ss_pred ccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC---------CCC
Q 048443 320 MMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR---------LTF 390 (486)
Q Consensus 320 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~ 390 (486)
.....+++|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|++|++++|+ +++
T Consensus 303 --~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 376 (466)
T 1o6v_A 303 --SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTR 376 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred --hhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCC
Confidence 001235678889999988886554 67888899999999888854 467888888888888888 567
Q ss_pred CCEEeccCCcccc
Q 048443 391 LEFFNATHNNLTG 403 (486)
Q Consensus 391 L~~L~ls~N~l~~ 403 (486)
|+.|++++|++++
T Consensus 377 L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 377 ITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCCEEEEC
T ss_pred CCEEeccCCcccC
Confidence 8888888888886
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=287.53 Aligned_cols=302 Identities=20% Similarity=0.159 Sum_probs=252.2
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+.+++.+++++|.+....+..|..+++|++|+++ +|.+++..|..|.. +++|++|+|++|.++.+ .|..+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYL------PPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTT--CTTCCEEECCSSCCCCC------CTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcC--CCCCCEEECCCCcCCCC------CHHHH
Confidence 36789999999999887777778999999999999 99999988889998 99999999999999987 34455
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCcc
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 204 (486)
. +++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..+..++. |++|++++|.+++.. +..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~---~~~l~~L~ 195 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLF 195 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECTTSCCSBCC---GGGCTTCS
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEEECcCCCCCCcC---hhhhhhhh
Confidence 5 899999999999999666666799999999999999999888888998887 999999999998753 45678899
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|. ....+
T Consensus 196 ~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~---l~~~~---------------- 248 (597)
T 3oja_B 196 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN---LTDTA---------------- 248 (597)
T ss_dssp EEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSC---CCCCG----------------
T ss_pred hhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCC---CCCCh----------------
Confidence 99999998874 344578999999999987544332 3678888888863 11110
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
....+++|+.|+|++|.+++..|..|..+++|++|+|++|.+
T Consensus 249 --------------------------------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 249 --------------------------------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp --------------------------------------GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred --------------------------------------hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 011146799999999999998899999999999999999999
Q ss_pred CccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCC
Q 048443 365 QGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 365 ~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~ 428 (486)
++ +|..+..+++|++|+|++|. +++|++|++++|++++.. ...+..+..+.+.+||+.|++
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 95 57777889999999999999 468899999999998653 345778889999999999954
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=270.04 Aligned_cols=311 Identities=22% Similarity=0.270 Sum_probs=114.7
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
++|++|++++|.+.+ +|.. +++|++|+++ +|++++. |.. .++|++|++++|+++++|. +.
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~-~n~l~~l-~~~-----~~~L~~L~L~~n~l~~lp~--------~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVD-NNNLKAL-SDL-----PPLLEYLGVSNNQLEKLPE--------LQN 151 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECC-SSCCSCC-CSC-----CTTCCEEECCSSCCSSCCC--------CTT
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECC-CCccCcc-cCC-----CCCCCEEECcCCCCCCCcc--------cCC
Confidence 345555555555444 3321 2444455554 4444421 110 2344445555444444221 12
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.++. |++|++++|.+++ +|.. .++|++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~-L~~L~l~~N~l~~-l~~~---~~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPF-LTAIYADNNSLKK-LPDL---PLSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTT-CCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCC-CCEEECCCCcCCc-CCCC---cCcccEE
Confidence 3444444444444442 33221 244444444444443 23 3444443 4444444444443 1211 1244444
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
++++|.++ .+| .++.+++|++|++++|++++ +|. .+++|+.|++++| ....+|.. .++|+.+++++|
T Consensus 221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N---~l~~l~~~----~~~L~~L~ls~N 287 (454)
T 1jl5_A 221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDN---YLTDLPEL----PQSLTFLDVSEN 287 (454)
T ss_dssp ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSS---CCSCCCCC----CTTCCEEECCSS
T ss_pred ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCC---cccccCcc----cCcCCEEECcCC
Confidence 44444444 333 24444444444444444443 121 1234444444444 22223321 134444444443
Q ss_pred hhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc
Q 048443 287 RYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
.... ....++.+..++++.+.+... ...+++|+.|++++|++++ +|.. +++|++|++++|+++
T Consensus 288 ~l~~-----------l~~~~~~L~~L~l~~N~l~~i-~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 288 IFSG-----------LSELPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA- 350 (454)
T ss_dssp CCSE-----------ESCCCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-
T ss_pred ccCc-----------ccCcCCcCCEEECcCCcCCcc-cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-
Confidence 2110 001123334444444443321 1222345555555555553 3332 345555555555555
Q ss_pred cCchhccCCCCCCEEeCCCCCC--------------------------CCCCEEeccCCcccc--CCCCCCCCCCCCCcc
Q 048443 367 HIPSCLGSLTNLESLDLSKNRL--------------------------TFLEFFNATHNNLTG--PIPQANQFPTFGYSS 418 (486)
Q Consensus 367 ~~~~~~~~l~~L~~L~Ls~N~l--------------------------~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~~ 418 (486)
.+|. .+++|++|++++|++ ++|++|++++|++++ .+|. ++..+.
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~ 422 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLR 422 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhhee
Confidence 2333 244555555555552 458888999999987 6664 344455
Q ss_pred ccCCcCCC
Q 048443 419 FNGNSRLC 426 (486)
Q Consensus 419 ~~~np~~c 426 (486)
+.+|.+.|
T Consensus 423 ~~~~~~~~ 430 (454)
T 1jl5_A 423 MNSERVVD 430 (454)
T ss_dssp --------
T ss_pred CcCcccCC
Confidence 55555544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=275.44 Aligned_cols=336 Identities=17% Similarity=0.132 Sum_probs=259.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
......+..+.+++++++|++|++++|.+.+. | .+..+++|++|+++ +|.+++. | +.. +++|++|++++|.+
T Consensus 26 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls-~n~l~~~-~--~~~--l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 26 AAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICT-SNNITTL-D--LSQ--NTNLTYLACDSNKL 97 (457)
T ss_dssp HHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECC-SSCCSCC-C--CTT--CTTCSEEECCSSCC
T ss_pred HhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEcc-CCcCCeE-c--ccc--CCCCCEEECcCCCC
Confidence 34455556666789999999999999998875 5 79999999999999 9999975 4 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
++++ +. +++|++|++++|++++ ++ +..+++|++|++++|++++. + ++.++. |++|++++|...
T Consensus 98 ~~~~---------~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~-L~~L~l~~n~~~ 161 (457)
T 3bz5_A 98 TNLD---------VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQ-LTELDCHLNKKI 161 (457)
T ss_dssp SCCC---------CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTT-CCEEECTTCSCC
T ss_pred ceee---------cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCc-CCEEECCCCCcc
Confidence 8852 33 7999999999999996 44 89999999999999999964 3 677777 999999999665
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|+.|++++| ....+|
T Consensus 162 ~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N---~l~~ip-- 228 (457)
T 3bz5_A 162 TKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN---KLTEID-- 228 (457)
T ss_dssp CCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS---CCSCCC--
T ss_pred ccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC---cccccC--
Confidence 555 47889999999999999996 45 88999999999999999875 4889999999999998 445577
Q ss_pred hhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcccc-CcccCcccEEEcccccccccCcc---
Q 048443 271 YFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH-DKIPDILKGIILSSNRFDGEMPT--- 346 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~--- 346 (486)
+..+++|+.+++++|......................+..++++.+...... ...++.|+.|++++|.+.+.+|.
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred -ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCC
Confidence 7788999999999985432111111000001111123445555555543322 23468899999999987665553
Q ss_pred -----chhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC----------------------CCCEEeccCC
Q 048443 347 -----SIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT----------------------FLEFFNATHN 399 (486)
Q Consensus 347 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------------------~L~~L~ls~N 399 (486)
.++.+++|++|++++|++++. + ++.+++|+.|++++|+++ .|+.+++++|
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTT
T ss_pred cceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccC
Confidence 256678899999999999974 3 888999999999999943 2455677777
Q ss_pred ccccCCCCC
Q 048443 400 NLTGPIPQA 408 (486)
Q Consensus 400 ~l~~~~p~~ 408 (486)
+++|.+|..
T Consensus 385 ~l~g~ip~~ 393 (457)
T 3bz5_A 385 SLTIAVSPD 393 (457)
T ss_dssp BEEEECCTT
T ss_pred cEEEEcChh
Confidence 777777754
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=259.25 Aligned_cols=297 Identities=24% Similarity=0.305 Sum_probs=169.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
+..+++|++|++++|.+... + .+..+++|++|+++ +|.+++..+ +.. +++|++|++++|.++.++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~-~n~i~~~~~--~~~--l~~L~~L~L~~n~i~~~~-------- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLN-GNQITDISP--LSN--LVKLTNLYIGTNKITDIS-------- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCCCCCG--------
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEcc-CCccccchh--hhc--CCcCCEEEccCCcccCch--------
Confidence 34566666666666665433 2 35666666666666 666664333 555 666666666666666532
Q ss_pred ccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 124 TTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 124 ~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
.+. +++|++|++++|.+++ ++. +..+++|++|++++|..... +..+..++. |++|++++|.+.+..+ +..+++
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~-L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTG-LNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTT-CCEEECCSSCCCCCGG--GGGCTT
T ss_pred HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCC-CcEEEecCCCcCCchh--hccCCC
Confidence 122 5666666666666663 232 66666666666666644422 233555555 6666666666654433 556666
Q ss_pred ccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccc
Q 048443 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFAN 282 (486)
Q Consensus 203 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~ 282 (486)
|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|+.|+++++ ....++. +..+++|+.++
T Consensus 179 L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n---~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 179 LYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN---KITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS---CCCCCGG--GTTCTTCCEEE
T ss_pred CCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC---ccCCCcc--hhcCCCCCEEE
Confidence 66666666666532 22 5566666666666666654433 566666666666665 3333333 45555555555
Q ss_pred cccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCc
Q 048443 283 SSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 362 (486)
++++.... . .....+++|+.|++++|.+++ + ..+..+++|++|++++|
T Consensus 250 l~~n~l~~-~-----------------------------~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 250 IGTNQISD-I-----------------------------NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCSSCCCC-C-----------------------------GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred CCCCccCC-C-----------------------------hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCC
Confidence 55542110 0 001123556666666666663 2 33566666666666666
Q ss_pred ccCccCchhccCCCCCCEEeCCCCC---------CCCCCEEeccCCccc
Q 048443 363 NLQGHIPSCLGSLTNLESLDLSKNR---------LTFLEFFNATHNNLT 402 (486)
Q Consensus 363 ~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~L~~L~ls~N~l~ 402 (486)
++++..+..+..+++|++|++++|+ +++|++|++++|+++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 6666666666666666666666666 334555555555543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=258.24 Aligned_cols=301 Identities=21% Similarity=0.260 Sum_probs=242.6
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|. +++.+.. +| .+..+++|++|++++|++.+..+ |..+++|++|+++ +|.++.. +.+.. +++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~-~n~i~~~--~~~~~--l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG-TNKITDI--SALQN--LTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCCC--GGGTT--CTTCSE
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEcc-CCcccCc--hHHcC--CCcCCE
Confidence 3445555 5555544 44 48889999999999999876544 9999999999999 9998863 46777 999999
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEE
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L 182 (486)
|++++|.++.++ . +. +++|++|++++|..... +..+..+++|++|++++|.+.+..+ +..++. |++|
T Consensus 115 L~l~~n~i~~~~-------~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~-L~~L 182 (347)
T 4fmz_A 115 LYLNEDNISDIS-------P-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTD-LYSL 182 (347)
T ss_dssp EECTTSCCCCCG-------G-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTT-CSEE
T ss_pred EECcCCcccCch-------h-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCC-CCEE
Confidence 999999998853 2 33 79999999999976644 4458999999999999999985443 778887 9999
Q ss_pred EccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCC
Q 048443 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPC 262 (486)
Q Consensus 183 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~ 262 (486)
++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n--- 253 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN--- 253 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS---
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC---
Confidence 999999976544 7889999999999999985443 8889999999999999986554 889999999999998
Q ss_pred ccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc
Q 048443 263 FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342 (486)
Q Consensus 263 ~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 342 (486)
....++ .+..+++|+.+++++|.... . .....+++|+.|++++|.+++
T Consensus 254 ~l~~~~--~~~~l~~L~~L~l~~n~l~~-~-----------------------------~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 254 QISDIN--AVKDLTKLKMLNVGSNQISD-I-----------------------------SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CCCCCG--GGTTCTTCCEEECCSSCCCC-C-----------------------------GGGGGCTTCSEEECCSSCCCG
T ss_pred ccCCCh--hHhcCCCcCEEEccCCccCC-C-----------------------------hhhcCCCCCCEEECcCCcCCC
Confidence 444453 37788888888888873211 0 011235789999999999998
Q ss_pred cCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 343 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
..+..+..+++|++|++++|.+++..| +..+++|++|++++|+++
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888999999999999999999997666 889999999999999864
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=251.86 Aligned_cols=265 Identities=20% Similarity=0.218 Sum_probs=213.9
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.+++.++++++.+. .+|..+. +.|++|+++ +|.+++..+..+.. +++|++|++++|.++.+ .|..+.
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~~ 98 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQ-NNKITEIKDGDFKN--LKNLHTLILINNKISKI------SPGAFAP 98 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECC-SSCCCCBCTTTTTT--CTTCCEEECCSSCCCCB------CTTTTTT
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECC-CCcCCEeChhhhcc--CCCCCEEECCCCcCCee------CHHHhcC
Confidence 47999999999865 4565543 689999999 99999888888988 99999999999999886 455666
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc--cCCccccCCCCcc
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG--TTPDTFMNGSDLR 204 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~ 204 (486)
+++|++|++++|+++ .+|..+. ++|++|++++|.+++..+..+..++. |++|++++|.+.. ..+..|..+++|+
T Consensus 99 l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcC
Confidence 899999999999998 5665554 79999999999999777777888887 9999999999964 6778889999999
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++| ....++...+.
T Consensus 175 ~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~----------- 237 (330)
T 1xku_A 175 YIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN---SISAVDNGSLA----------- 237 (330)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS---CCCEECTTTGG-----------
T ss_pred EEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC---cCceeChhhcc-----------
Confidence 9999999998 4565553 89999999999999888889999999999999887 33333322111
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
.+++|+.|++++|.++ .+|..+..+++|++|++++|++
T Consensus 238 -----------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 238 -----------------------------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp -----------------------------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred -----------------------------------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 1356999999999998 7888899999999999999999
Q ss_pred CccCchhccCC------CCCCEEeCCCCC
Q 048443 365 QGHIPSCLGSL------TNLESLDLSKNR 387 (486)
Q Consensus 365 ~~~~~~~~~~l------~~L~~L~Ls~N~ 387 (486)
++..+..|... +.++.|++++|+
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CccChhhcCCcccccccccccceEeecCc
Confidence 97777776543 344445554444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-31 Score=254.60 Aligned_cols=264 Identities=22% Similarity=0.232 Sum_probs=211.0
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.+++.++++++.+. .+|..+. ++|++|+++ +|.+++..|..+.. +++|++|++++|.++.+ .|..+.
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~~ 100 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQ-NNDISELRKDDFKG--LQHLYALVLVNNKISKI------HEKAFSP 100 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECC-SSCCCEECTTTTTT--CTTCCEEECCSSCCCEE------CGGGSTT
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECC-CCcCCccCHhHhhC--CCCCcEEECCCCccCcc------CHhHhhC
Confidence 37999999999965 5565553 689999999 99999888888988 99999999999999876 455666
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc--cCCccccCCCCcc
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG--TTPDTFMNGSDLR 204 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~ 204 (486)
+++|++|++++|+++ .+|..+. ++|++|++++|++++..+..+..++. |++|++++|.+.. ..+..|..+ +|+
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccC
Confidence 899999999999998 5665554 79999999999998666667888887 9999999999963 677778777 899
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
+|++++|.+++ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++| ....++...+..
T Consensus 176 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N---~l~~~~~~~~~~---------- 239 (332)
T 2ft3_A 176 YLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN---QIRMIENGSLSF---------- 239 (332)
T ss_dssp CCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS---CCCCCCTTGGGG----------
T ss_pred EEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC---cCCcCChhHhhC----------
Confidence 99999999984 565554 78999999999999888888889999999998887 333343322221
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
+++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus 240 ------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 240 ------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 356899999999998 7888899999999999999999
Q ss_pred CccCchhccCC------CCCCEEeCCCCC
Q 048443 365 QGHIPSCLGSL------TNLESLDLSKNR 387 (486)
Q Consensus 365 ~~~~~~~~~~l------~~L~~L~Ls~N~ 387 (486)
++..+..|... ..|+.|++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CccChhHccccccccccccccceEeecCc
Confidence 97777776553 345555555544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=253.77 Aligned_cols=261 Identities=15% Similarity=0.157 Sum_probs=162.2
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
.+|..+. ++|++|++++|++.+..+..|.++++|++|+++ +|.+++..|..+.. +++|++|++++|+++++|
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~--- 116 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLS--- 116 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTT--CTTCCEEECCSSCCSSCC---
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECC-CCccCccCHhhcCC--CCCCCEEECCCCcCCcCC---
Confidence 3454444 467777777777666655567777777777777 77777666666666 777777777777766642
Q ss_pred CCCCcccc-cCccCeeecccCcccccCC-ccccCCCCCCEEECcCC-cCcccccchhhhcCCCCcEEEccCccccccCCc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIP-SWICNLSSLYVLDLSDN-NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
+..+. +++|++|++++|++++..+ ..|..+++|++|++++| .+.+..+..+..++. |++|++++|.+.+..|.
T Consensus 117 ---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 117 ---SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPK 192 (353)
T ss_dssp ---HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCCEECTT
T ss_pred ---HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcCccCHH
Confidence 12233 5666777777776663222 25666666666666666 355444455655555 66666666666666666
Q ss_pred cccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcc
Q 048443 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCW 275 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l 275 (486)
.|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+...
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------------- 245 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG--------------------------- 245 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------------
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc---------------------------
Confidence 66666666666666666653322233345666666666666654332211100
Q ss_pred ccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc----cCccchhcc
Q 048443 276 NAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG----EMPTSIANL 351 (486)
Q Consensus 276 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~~~~l 351 (486)
.....++.++++++.+++ .+|..+..+
T Consensus 246 -------------------------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 246 -------------------------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp --------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred -------------------------------------------------cccchhhccccccccccCcchhhhHHHHhcc
Confidence 001235555555555543 577889999
Q ss_pred CCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 999999999999994444446888888888888776
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=234.75 Aligned_cols=209 Identities=19% Similarity=0.126 Sum_probs=179.9
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC-CCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY-FPRFDQHP 118 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~ 118 (486)
+|..+ .++|++|++++|++.+..+..|..+++|++|+++ +|.+++..|..+.. +++|++|++++|. ++.+
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~l~~n~~l~~~---- 96 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTG--LALLEQLDLSDNAQLRSV---- 96 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTT--CTTCCEEECCSCTTCCCC----
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECC-CCccceeCHhhcCC--ccCCCEEeCCCCCCcccc----
Confidence 45443 3689999999999988888889999999999999 99999888889988 9999999999997 7775
Q ss_pred CCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTF 197 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~ 197 (486)
.+..+. +++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++. |++|++++|++++..+..|
T Consensus 97 --~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 97 --DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEECTTTT
T ss_pred --CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-ccEEECCCCcccccCHHHh
Confidence 344555 789999999999999777888899999999999999998766666888887 9999999999988877788
Q ss_pred cCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 198 MNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
..+++|++|++++|.+++..|.++..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 899999999999999998888889999999999999999987777778888888888888873
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=241.19 Aligned_cols=207 Identities=20% Similarity=0.243 Sum_probs=152.7
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCccccc--CCchhccccCCCCcEEEccCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN--IPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~--~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l 117 (486)
+|..+. ++|++|++++|++....+..|.++++|++|+++ +|.++.. .+..+.. +++|++|++++|.++.+
T Consensus 22 ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~l--- 93 (306)
T 2z66_A 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVITM--- 93 (306)
T ss_dssp CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCEEEEEEHHHHS--CSCCCEEECCSCSEEEE---
T ss_pred CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECC-CCccCcccCccccccc--ccccCEEECCCCccccC---
Confidence 454443 578888888888776656667888888888888 8888743 3566666 88888888888887764
Q ss_pred CCCCCcccc-cCccCeeecccCcccccCC-ccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc-cCC
Q 048443 118 PTVLPWTTL-STKIRHYLISKNNLTGEIP-SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG-TTP 194 (486)
Q Consensus 118 ~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~-~~~ 194 (486)
|..+. +++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..++. |++|++++|.+.+ ..|
T Consensus 94 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 94 ----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLP 168 (306)
T ss_dssp ----EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEEGGGEEC
T ss_pred ----hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCccccccch
Confidence 33344 7788888888888875443 46777888888888888887767777777776 8888888888776 567
Q ss_pred ccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 195 DTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 77777888888888888887766777777888888888888877666656666666665555554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=241.16 Aligned_cols=246 Identities=21% Similarity=0.190 Sum_probs=166.8
Q ss_pred CEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCc
Q 048443 51 QWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STK 129 (486)
Q Consensus 51 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~ 129 (486)
+.++.+++.+. .+|..+. ++|++|+++ +|.++...+..+.. +++|++|++++|.++.+.. .+..+. +++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~-~n~l~~i~~~~~~~--l~~L~~L~L~~n~l~~~~~----~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELE-SNKLQSLPHGVFDK--LTQLTKLSLSSNGLSFKGC----CSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECC-SSCCCCCCTTTTTT--CTTCSEEECCSSCCCEEEE----EEHHHHSCSC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECC-CCccCccCHhHhhc--cccCCEEECCCCccCcccC----cccccccccc
Confidence 46777777754 3444332 578888888 88887555555666 8888888888887764311 122222 677
Q ss_pred cCeeecccCcccccCCccccCCCCCCEEECcCCcCccccc-chhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELL-QCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..++. |++|++++|.+.+..+..|..+++|++|++
T Consensus 80 L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-CCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC-CCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 888888888777 456667777888888888877775443 45666665 777777777777777777777777777777
Q ss_pred cCCcccc-ccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 209 SHNLLQG-KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 209 ~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
++|.+++ ..|..+..+++|++|++++|.+++..|.++..++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------------------- 199 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-------------------------------------- 199 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT--------------------------------------
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC--------------------------------------
Confidence 7777765 4666777777777777777777665555544443
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
+|+.|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 200 -----------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 200 -----------------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp -----------------------------------------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred -----------------------------------------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 355666666666655555667777777777777777777
Q ss_pred CchhccCCC-CCCEEeCCCCC
Q 048443 368 IPSCLGSLT-NLESLDLSKNR 387 (486)
Q Consensus 368 ~~~~~~~l~-~L~~L~Ls~N~ 387 (486)
.|..+..++ +|++|++++|+
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCC
T ss_pred CHHHHHhhhccCCEEEccCCC
Confidence 776666663 66666666665
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-29 Score=248.75 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=179.6
Q ss_pred CCcccccCcccceeeeehhcc----CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTILLFYLMT----SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~----~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
|..|.|..-.....|.....+ ..++.++.|+ ++|++.+..|..|.++++|++|+|++|++.+..+..|.++++|+
T Consensus 47 p~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 47 PSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp CTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence 567888754333444433222 2345666776 77777777777888888888888888887777777788888888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeeccc-CcccccCCccccCCCC
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISK-NNLTGEIPSWICNLSS 153 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~~l~~ 153 (486)
+|+|+ +|.++...+..+.. +++|++|+|++|+++.++ +..+. +++|++|++++ +.+....+..|.++++
T Consensus 127 ~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 127 TLELF-DNWLTVIPSGAFEY--LSKLRELWLRNNPIESIP------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp EEECC-SSCCSBCCTTTSSS--CTTCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred EEECC-CCcCCccChhhhcc--cCCCCEEECCCCCcceeC------HhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 88888 78887766666777 788888888888877653 23344 67888888887 4444344446777888
Q ss_pred CCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEcc
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 233 (486)
|++|++++|++++ +| .+..++. |++|++++|.+++..|..|.++++|++|++++|.+++..+.+|..+++|++|+++
T Consensus 198 L~~L~L~~n~l~~-~~-~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-MP-NLTPLVG-LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CCEEECTTSCCSS-CC-CCTTCTT-CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccc-cc-ccccccc-ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 8888888888774 33 4566665 8888888888887777778888888888888888877777777788888888888
Q ss_pred CCccccCCCccccCCCCCCEEEcCcc
Q 048443 234 NNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 234 ~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+|++++..+..+..+++|+.|++++|
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCcCCccChHHhccccCCCEEEccCC
Confidence 88887766777777888888888776
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=247.12 Aligned_cols=247 Identities=18% Similarity=0.147 Sum_probs=177.5
Q ss_pred CCcccccCcccceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
|..|.|..-.....|..... ...++.++.|+ ++|++.+..+..|.++++|++|+|++|++.+..+..|.++++|+
T Consensus 36 p~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 36 PSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp CSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence 67789975333334443322 23344566666 77777777777788888888888888887777777788888888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccC-cccccCCccccCCCC
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKN-NLTGEIPSWICNLSS 153 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 153 (486)
+|+|+ +|+++...+..|.. +++|++|++++|.++.++ +..+. +++|++|++++| .++...+..|.++++
T Consensus 116 ~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 116 TLELF-DNRLTTIPNGAFVY--LSKLKELWLRNNPIESIP------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp EEECC-SSCCSSCCTTTSCS--CSSCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred EEECC-CCcCCeeCHhHhhc--cccCceeeCCCCcccccC------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 88888 77777666667777 788888888888777653 23344 677888888874 444344446777888
Q ss_pred CCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEcc
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 233 (486)
|++|++++|+++ .+| .+..++. |++|++++|++++..+..|.++++|++|++++|.+++..+.+|..+++|++|+|+
T Consensus 187 L~~L~L~~n~l~-~~~-~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 187 LRYLNLAMCNLR-EIP-NLTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp CCEEECTTSCCS-SCC-CCTTCSS-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred cCeecCCCCcCc-ccc-ccCCCcc-cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 888888888777 344 3566665 8888888888877777778788888888888888877777777778888888888
Q ss_pred CCccccCCCccccCCCCCCEEEcCcc
Q 048443 234 NNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 234 ~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+|++++..+..|..+++|+.|++++|
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCccChhHhccccCCCEEEcCCC
Confidence 88887777777777788888887776
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-32 Score=273.33 Aligned_cols=328 Identities=16% Similarity=0.095 Sum_probs=158.4
Q ss_pred CCCCCCCCEeeCcCCCCCC----CCcccccCCCCCCeeccCCCCcccccCCchhccccCC----CCcEEEccCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLR----ELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMK----NFSYLNLSKNYFPRFD 115 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~----~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~----~L~~L~Ls~N~l~~~~ 115 (486)
+..+++|++|++++|++.. .++..+..+++|++|+++ +|.+.+..+..+... ++ +|++|++++|.++...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-~n~l~~~~~~~l~~~-l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-SNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-TCCCHHHHHHHHHHT-TCSTTCCCCEEECTTSCCBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-CCcCChHHHHHHHHH-HhhCCCceeEEEccCCCCCHHH
Confidence 4445556666666665543 234445555666666666 555554333333221 33 4666666666554210
Q ss_pred CCCCCCCcccc-cCccCeeecccCcccccCCcccc-----CCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEcc
Q 048443 116 QHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWIC-----NLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 116 ~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~ 185 (486)
. ..++..+. +++|++|++++|.+++..+..+. ..++|++|++++|++++.. +..+..++. |++|+++
T Consensus 102 ~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L~ 178 (461)
T 1z7x_W 102 C--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD-FKELTVS 178 (461)
T ss_dssp H--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT-CCEEECC
T ss_pred H--HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC-CCEEECc
Confidence 0 00122223 45566666666665533222221 2345666666666555422 333344444 6666666
Q ss_pred CccccccCCcccc-----CCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCccccCC-----CccccCCCCC
Q 048443 186 GKNFFGTTPDTFM-----NGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQINDTF-----PIWLGSLLEL 251 (486)
Q Consensus 186 ~n~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L 251 (486)
+|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 6655443332222 234566666666655532 3444555566666666666554321 1222245566
Q ss_pred CEEEcCccCCCcccc-----CChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcc
Q 048443 252 NILVLIQQLPCFMGK-----LPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKI 326 (486)
Q Consensus 252 ~~L~l~~n~~~~~~~-----ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 326 (486)
+.|+++++ ..+. ++.. +..+++|+.+++++|............ .....
T Consensus 259 ~~L~L~~n---~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~-----------------------~l~~~ 311 (461)
T 1z7x_W 259 RTLWIWEC---GITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGARLLCE-----------------------TLLEP 311 (461)
T ss_dssp CEEECTTS---CCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHH-----------------------HHTST
T ss_pred eEEECcCC---CCCHHHHHHHHHH-HhhCCCcceEECCCCCCchHHHHHHHH-----------------------HhccC
Confidence 66666554 2221 2222 344555555555554211000000000 00001
Q ss_pred cCcccEEEccccccccc----CccchhccCCCCeeeCCCcccCccCchhccC-----CCCCCEEeCCCCC----------
Q 048443 327 PDILKGIILSSNRFDGE----MPTSIANLKGLQVLGLASNNLQGHIPSCLGS-----LTNLESLDLSKNR---------- 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~---------- 387 (486)
.+.|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|+
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 13566667776666643 3444555666777777777666544443332 4566677776666
Q ss_pred -----CCCCCEEeccCCcccc
Q 048443 388 -----LTFLEFFNATHNNLTG 403 (486)
Q Consensus 388 -----l~~L~~L~ls~N~l~~ 403 (486)
+++|++|++++|++++
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHhCCCccEEECCCCCCCH
Confidence 3466667777766653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=235.74 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=178.0
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|+ ++|.+. .+|+.+.++++|++|+|++|.+. .+|..|+.+++|++|+++ +|.++ .+|..+.. +++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls-~n~l~-~lp~~l~~--l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA-RNPLR-ALPASIAS--LNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEE-SCCCC-CCCGGGGG--CTTCCE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECC-CCccc-cCcHHHhc--CcCCCE
Confidence 4455555 666666 67878888888888888888877 778888888888888888 88888 67888888 888888
Q ss_pred EEccCCCCC-CCCC-CCC-CCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 104 LNLSKNYFP-RFDQ-HPT-VLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 104 L~Ls~N~l~-~~~~-l~~-l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
|++++|.+. .+|. +.. ..+..+. +++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+..++. |
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~-L 231 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK-L 231 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTT-C
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCC-C
Confidence 888886554 3332 000 0011122 788888888888888 77888888888888888888888 46667888887 8
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
++|++++|++.+.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.+++.+++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887765
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=234.94 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=47.2
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~L~ 392 (486)
++|+.|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.+++..|.+..+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 34666667777776677777778888888888888877788888888888888877776654443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-29 Score=241.02 Aligned_cols=275 Identities=16% Similarity=0.181 Sum_probs=144.8
Q ss_pred CCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 47 LNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 47 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
++.....+.+++++. .+|..+. ++|++|+++ +|.+++..+..+.. +++|++|++++|.++++ .+..+.
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~ 97 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLS-NNRITYISNSDLQR--CVNLQALVLTSNGINTI------EEDSFS 97 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECT-TSCCCEECTTTTTT--CTTCCEEECTTSCCCEE------CTTTTT
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECC-CCcCcccCHHHhcc--CCCCCEEECCCCccCcc------CHhhcC
Confidence 444455666666643 3343333 356666666 66666555555555 66666666666655543 222233
Q ss_pred -cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCC-ccccCCCCcc
Q 048443 127 -STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP-DTFMNGSDLR 204 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~ 204 (486)
+++|++|++++|++++..+..|.++++|++|++++|+++ +..+ ..|..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-------------------------TLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-------------------------SSCSSCSCTTCTTCC
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-------------------------ccCchhhhccCCCCc
Confidence 455555555555555322223455555555555555554 3222 2344444444
Q ss_pred EEECcCC-ccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcccccccccc
Q 048443 205 MVDLSHN-LLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283 (486)
Q Consensus 205 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~ 283 (486)
+|++++| .+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++| ....+|...+..
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n---~l~~~~~~~~~~--------- 220 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK---QHILLLEIFVDV--------- 220 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS---CSTTHHHHHHHH---------
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC---ccccchhhhhhh---------
Confidence 4444444 233333344444444444444444444444444444444444444443 122222221111
Q ss_pred ccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccch---hccCCCCeeeCC
Q 048443 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSI---ANLKGLQVLGLA 360 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls 360 (486)
+++|+.|++++|.+++..+..+ .....++.++++
T Consensus 221 -------------------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 221 -------------------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp -------------------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred -------------------------------------------cccccEEECCCCccccccccccccccccchhhccccc
Confidence 2457778888888876544433 235667888888
Q ss_pred CcccCc----cCchhccCCCCCCEEeCCCCCCCCCCEEeccCCccccCCCCC--CCCCCCCCccccCCcCCCC
Q 048443 361 SNNLQG----HIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQA--NQFPTFGYSSFNGNSRLCG 427 (486)
Q Consensus 361 ~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~~~~~~np~~c~ 427 (486)
++.+.+ .+|..+..+++|++|++++|+++ .+|.. ..+..+..+.+.+||+.|+
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--------------~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK--------------SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC--------------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC--------------ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 888775 46777888888888888877633 22222 2345556666667776665
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=229.80 Aligned_cols=243 Identities=20% Similarity=0.215 Sum_probs=169.7
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
++++.+++.++.+|. .+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..++. |++
T Consensus 14 ~~~~c~~~~l~~ip~-------~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-------GI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCT-------TC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCE
T ss_pred eEEEcCcCCcccCCc-------CC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC-CCE
Confidence 456666666665432 11 356677777777776555566667777777777777776655666666665 777
Q ss_pred EEccCcc-ccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 182 LSLQGKN-FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 182 L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
|++++|. +....+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n- 163 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN- 163 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-
Confidence 7777775 55555666777777777777777777665666777777777777777776666666667777777777665
Q ss_pred CCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccc
Q 048443 261 PCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRF 340 (486)
Q Consensus 261 ~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 340 (486)
....+|...|.. +++|+.|++++|.+
T Consensus 164 --~l~~~~~~~~~~----------------------------------------------------l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 164 --RISSVPERAFRG----------------------------------------------------LHSLDRLLLHQNRV 189 (285)
T ss_dssp --CCCEECTTTTTT----------------------------------------------------CTTCCEEECCSSCC
T ss_pred --cccccCHHHhcC----------------------------------------------------ccccCEEECCCCcc
Confidence 233333321111 35688899999999
Q ss_pred cccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC----------CCCEEeccCCccccCCCCC
Q 048443 341 DGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT----------FLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 341 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~L~~L~ls~N~l~~~~p~~ 408 (486)
++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++. .++.+..+.+.+.+..|..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 9888999999999999999999999877778999999999999999843 3455566777777777764
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=239.28 Aligned_cols=244 Identities=19% Similarity=0.154 Sum_probs=154.2
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
.+.++.++..+. .+|..+. +++++|+|+ +|.+++..+..|.+ +++|++|+|++|.++.+ .+..+. ++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~------~~~~~~~l~ 123 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLM-ENNIQMIQADTFRH--LHHLEVLQLGRNSIRQI------EVGAFNGLA 123 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECC-SSCCCEECTTTTTT--CTTCCEEECCSSCCCEE------CTTTTTTCT
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECc-CCcCceECHHHcCC--CCCCCEEECCCCccCCc------ChhhccCcc
Confidence 455666655543 3443332 466666666 66666666666666 66666666666666654 223333 56
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccC-ccccccCCccccCCCCccEEE
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG-KNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ 207 (486)
+|++|+|++|++++..+..|..+++|++|++++|+++...+..|..++. |+.|++++ |.+....+..|.++++|++|+
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc-ccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 6666666666666544555666666666666666666444445555655 66666666 333333344566666677777
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.+++ +| .+..+++|++|++++|.+.+..|..|..+
T Consensus 203 L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------------------- 241 (452)
T 3zyi_A 203 LGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL--------------------------------------- 241 (452)
T ss_dssp CTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTC---------------------------------------
T ss_pred CCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCc---------------------------------------
Confidence 77776663 33 35666666777777666665555444433
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
++|+.|++++|++++..+..|..+++|++|+|++|++++.
T Consensus 242 ----------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 242 ----------------------------------------SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp ----------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ----------------------------------------cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 3366666677777767777788888888888888888877
Q ss_pred CchhccCCCCCCEEeCCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+..|..+++|+.|+|++|+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSC
T ss_pred ChHHhccccCCCEEEccCCC
Confidence 77777788888888888887
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=238.59 Aligned_cols=244 Identities=21% Similarity=0.187 Sum_probs=137.0
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
.+.++.++.++. .+|..+. ++++.|+|+ +|++++..+..|.+ +++|++|+|++|.++.+ .+..+. ++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~i------~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLH-ENQIQIIKVNSFKH--LRHLEILQLSRNHIRTI------EIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECC-SCCCCEECTTTTSS--CSSCCEEECCSSCCCEE------CGGGGTTCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEcc-CCcCCeeCHHHhhC--CCCCCEEECCCCcCCcc------ChhhccCCc
Confidence 344555544432 3333332 445555555 55555555555555 55555555555555443 122233 45
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCc-cccccCCccccCCCCccEEE
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGK-NFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~ 207 (486)
+|++|+|++|+++...+..|..+++|++|++++|.++...+..|..++. |++|++++| .+....+..|.++++|++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc-cCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 5555555555555433344555555555555555555444444555554 555555552 23333333455556666666
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.++ .+| .+..+++|++|++++|.+++..|..|..+
T Consensus 192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------------------- 230 (440)
T 3zyj_A 192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL--------------------------------------- 230 (440)
T ss_dssp CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC---------------------------------------
T ss_pred CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccC---------------------------------------
Confidence 6666655 333 25555666666666666554444433332
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
++|+.|++++|++++..+..|..+++|++|+|++|++++.
T Consensus 231 ----------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 231 ----------------------------------------MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp ----------------------------------------TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred ----------------------------------------ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 3466666667777766677777888888888888888877
Q ss_pred CchhccCCCCCCEEeCCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+..|..+++|+.|+|++|+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSC
T ss_pred ChhHhccccCCCEEEcCCCC
Confidence 77777778888888888777
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-30 Score=263.17 Aligned_cols=363 Identities=17% Similarity=0.114 Sum_probs=260.2
Q ss_pred cCcccceeeeehhccC-------CChhhhhhc-cCCcccc----cCCcCCCCCCCCCEeeCcCCCCCCCCccccc-CCC-
Q 048443 7 SELTRLTILLFYLMTS-------DSPFLDRLQ-RLSDFSG----QIPPSLGNLNQLQWLDLAFNNFLRELPASIG-SLS- 72 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~-------~~~~l~~L~-~~n~~~~----~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~- 72 (486)
..+++++++.+.+... ..+.++.|+ ++|.+++ .++..+..+++|++|+|++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567888877664322 123445555 7777774 4577788899999999999998765554443 455
Q ss_pred ---CCCeeccCCCCcccc----cCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcc-cc-cCccCeeecccCccccc
Q 048443 73 ---SLERLDTFPPMKIHG----NIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT-TL-STKIRHYLISKNNLTGE 143 (486)
Q Consensus 73 ---~L~~L~L~~~n~i~~----~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~-~~-~~~L~~L~Ls~n~l~~~ 143 (486)
+|++|+++ +|.++. .++..+.. +++|++|++++|.++.... .. +... .. .++|++|++++|++++.
T Consensus 83 ~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~-~~-l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 83 PSCKIQKLSLQ-NCCLTGAGCGVLSSTLRT--LPTLQELHLSDNLLGDAGL-QL-LCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TTCCCCEEECT-TSCCBGGGHHHHHHHTTS--CTTCCEEECCSSBCHHHHH-HH-HHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CCCceeEEEcc-CCCCCHHHHHHHHHHHcc--CCceeEEECCCCcCchHHH-HH-HHHHHhcCCCcceEEECCCCCCCHH
Confidence 79999999 999984 56888888 9999999999999863200 00 0000 11 35799999999999864
Q ss_pred ----CCccccCCCCCCEEECcCCcCcccccchhhh-----cCCCCcEEEccCcccccc----CCccccCCCCccEEECcC
Q 048443 144 ----IPSWICNLSSLYVLDLSDNNLSGELLQCLGN-----FSGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDLSH 210 (486)
Q Consensus 144 ----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~-----~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~ 210 (486)
++..+..+++|++|++++|.+++..+..+.. .+. |++|++++|.+++. ++..+..+++|++|++++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ-LEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC-CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC-ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 3566777899999999999998655554443 334 99999999999864 466677889999999999
Q ss_pred Ccccccc-----CccCcCCCCCCEEEccCCccccC----CCccccCCCCCCEEEcCccCCCccccCChhhh-----hccc
Q 048443 211 NLLQGKI-----PKSLANCAVLEISDLRNNQINDT----FPIWLGSLLELNILVLIQQLPCFMGKLPSKYF-----QCWN 276 (486)
Q Consensus 211 N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~-----~~l~ 276 (486)
|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|+.|++++|. .+..+...+ ...+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE---LGDEGARLLCETLLEPGC 313 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC---CHHHHHHHHHHHHTSTTC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC---CchHHHHHHHHHhccCCc
Confidence 9987532 33344689999999999999864 56677789999999999983 322221112 2235
Q ss_pred cccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhc-----c
Q 048443 277 AMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIAN-----L 351 (486)
Q Consensus 277 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-----l 351 (486)
+|+.+++++|.......... .......++|+.|++++|.+++..+..+.. .
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l------------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHF------------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHH------------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred cceeeEcCCCCCchHHHHHH------------------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 77888777763211100000 000112477999999999998765555543 6
Q ss_pred CCCCeeeCCCcccCc----cCchhccCCCCCCEEeCCCCCCC----------------CCCEEeccCCccc
Q 048443 352 KGLQVLGLASNNLQG----HIPSCLGSLTNLESLDLSKNRLT----------------FLEFFNATHNNLT 402 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~----------------~L~~L~ls~N~l~ 402 (486)
++|++|++++|.+++ .+|..+..+++|++|++++|+++ .|+.|++.++...
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 799999999999996 67888889999999999999943 5777777776654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-29 Score=240.57 Aligned_cols=249 Identities=20% Similarity=0.275 Sum_probs=126.6
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCccc-ccCCchhc-------cccCCCCcEEEccCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIH-GNIPKWLL-------NPSMKNFSYLNLSKNYFPRFD 115 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~-~~~p~~~~-------~~~l~~L~~L~Ls~N~l~~~~ 115 (486)
+...++|+.|++++|.+ .+|..+... |++|+++ +|.++ ..+|..+. . +++|++|++++|.++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~-~n~l~~~~~~~~~~~~~~~~~~--l~~L~~L~L~~n~l~--- 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLK-RLTVRAARIPSRILFGALRVLG--ISGLQELTLENLEVT--- 108 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCC-EEEEEEEECBHHHHHHHHHHHT--TSCCCEEEEEEEBCB---
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--Hhhcccc-cccccCCCcCHHHHHHHHHhcC--cCCccEEEccCCccc---
Confidence 44556677777777776 555555433 7777777 67663 34454443 4 555555555555554
Q ss_pred CCCCCCCcccccCccCeeecccCcccccCCccc--cCCCCCCEEECcCCcCcccccchhhhc-----CCCCcEEEccCcc
Q 048443 116 QHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWI--CNLSSLYVLDLSDNNLSGELLQCLGNF-----SGGLSVLSLQGKN 188 (486)
Q Consensus 116 ~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~i~~~~~~~l~~~-----~~~L~~L~L~~n~ 188 (486)
+.+|..+ ..+++|++|++++|++++. |..+..+ +. |++|++++|+
T Consensus 109 --------------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~-L~~L~L~~N~ 160 (312)
T 1wwl_A 109 --------------------------GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPG-LKVLSIAQAH 160 (312)
T ss_dssp --------------------------SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTT-CCEEEEESCS
T ss_pred --------------------------chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCC-CcEEEeeCCC
Confidence 3333332 4444444444444444433 4444433 32 4444444444
Q ss_pred ccccCCccccCCCCccEEECcCCccccc--cCccC--cCCCCCCEEEccCCccccC---CCccccCCCCCCEEEcCccCC
Q 048443 189 FFGTTPDTFMNGSDLRMVDLSHNLLQGK--IPKSL--ANCAVLEISDLRNNQINDT---FPIWLGSLLELNILVLIQQLP 261 (486)
Q Consensus 189 i~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~n~~ 261 (486)
+.+..+..|..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++. ....+..+++|+.|++++|.
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~- 239 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS- 239 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-
T ss_pred CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-
Confidence 4444444444444555555555544332 11122 4444555555555544411 11222344455555554442
Q ss_pred CccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccc
Q 048443 262 CFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFD 341 (486)
Q Consensus 262 ~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 341 (486)
+.+..|...+ ..+++|+.|++++|.++
T Consensus 240 -l~~~~~~~~~----------------------------------------------------~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 240 -LRDAAGAPSC----------------------------------------------------DWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp -CCSSCCCSCC----------------------------------------------------CCCTTCCEEECTTSCCS
T ss_pred -CCcccchhhh----------------------------------------------------hhcCCCCEEECCCCccC
Confidence 1111111000 00245777777777777
Q ss_pred ccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 342 GEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 342 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
.+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus 267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 -QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 5666554 6777777777777754 44 667777777777766643
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-29 Score=241.38 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
.+..+++|++|+|++|++.+..|..|..+++|++|+++ +|.+++..+ +.. +++|++|++++|.+++++.
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~--l~~L~~L~Ls~n~l~~l~~------ 97 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LES--LSTLRTLDLNNNYVQELLV------ 97 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECT-TSCCEEEEE--ETT--CTTCCEEECCSSEEEEEEE------
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECC-CCcCCcchh--hhh--cCCCCEEECcCCccccccC------
Confidence 33445556666666666555555556666666666666 555554433 444 5555555555555544321
Q ss_pred cccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc-CCC
Q 048443 123 WTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM-NGS 201 (486)
Q Consensus 123 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~ 201 (486)
.++|++|++++|++++..+. .+++|++|++++|++++..+..+..++. |++|++++|.+.+..+..+. .++
T Consensus 98 ----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp ----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCcccHHHHhhccC
Confidence 24455555555555433222 1334444444444444433334444443 44444444444443333332 334
Q ss_pred CccEEECcCCccc
Q 048443 202 DLRMVDLSHNLLQ 214 (486)
Q Consensus 202 ~L~~L~L~~N~l~ 214 (486)
+|++|++++|.++
T Consensus 170 ~L~~L~L~~N~l~ 182 (317)
T 3o53_A 170 TLEHLNLQYNFIY 182 (317)
T ss_dssp TCCEEECTTSCCC
T ss_pred cCCEEECCCCcCc
Confidence 4444444444444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-29 Score=238.33 Aligned_cols=237 Identities=20% Similarity=0.177 Sum_probs=180.7
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCccc-ccCCcccc-------CCCCCCEEECcCCcCccccc
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLT-GEIPSWIC-------NLSSLYVLDLSDNNLSGELL 169 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~N~i~~~~~ 169 (486)
.++|+.|++++|.+ . +|..+. ..|++|++++|.++ ..+|..+. ++++|++|++++|++++..|
T Consensus 42 ~~~L~~l~l~~n~l-~-------~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-A-------DLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEECTTHHHHCCTT-C-------CCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCCceeEeeccccc-c-------cHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 44555555555555 3 232222 23777888888884 35666555 79999999999999998888
Q ss_pred chh--hhcCCCCcEEEccCccccccCCccccCC-----CCccEEECcCCccccccCccCcCCCCCCEEEccCCccccC--
Q 048443 170 QCL--GNFSGGLSVLSLQGKNFFGTTPDTFMNG-----SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT-- 240 (486)
Q Consensus 170 ~~l--~~~~~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-- 240 (486)
..+ ..++. |++|++++|.+++. |..+..+ ++|++|++++|.+++..|..|+.+++|++|++++|++.+.
T Consensus 113 ~~~~~~~l~~-L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPD-LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCC-CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCC-ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 876 77777 99999999999987 7777766 8999999999999988889999999999999999998764
Q ss_pred CCccc--cCCCCCCEEEcCccCCCccc---cCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEee
Q 048443 241 FPIWL--GSLLELNILVLIQQLPCFMG---KLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMS 315 (486)
Q Consensus 241 ~~~~~--~~l~~L~~L~l~~n~~~~~~---~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (486)
.+..+ ..+++|+.|++++|. .. .++...+..
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~~~----------------------------------------- 226 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAG---METPSGVCSALAAA----------------------------------------- 226 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSC---CCCHHHHHHHHHHT-----------------------------------------
T ss_pred HHHHHHhccCCCCCEEECCCCc---CcchHHHHHHHHhc-----------------------------------------
Confidence 23334 889999999999983 32 222221111
Q ss_pred cCCCccccCcccCcccEEEcccccccccCc-cchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCC------
Q 048443 316 NEGQMMTHDKIPDILKGIILSSNRFDGEMP-TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL------ 388 (486)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------ 388 (486)
+++|+.|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++
T Consensus 227 -----------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~~ 292 (312)
T 1wwl_A 227 -----------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSP 292 (312)
T ss_dssp -----------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCCT
T ss_pred -----------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChhH
Confidence 3569999999999997664 45677899999999999999 7777665 7888888888873
Q ss_pred ---CCCCEEeccCCcccc
Q 048443 389 ---TFLEFFNATHNNLTG 403 (486)
Q Consensus 389 ---~~L~~L~ls~N~l~~ 403 (486)
++|++|++++|++++
T Consensus 293 ~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 293 DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCEEEEEECTTCTTTC
T ss_pred hhCCCCCEEeccCCCCCC
Confidence 345566666666653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-28 Score=234.45 Aligned_cols=236 Identities=21% Similarity=0.118 Sum_probs=136.4
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S 127 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~ 127 (486)
.++..+++.+.+.......+..+++|++|+++ +|.+++..|..+.. +++|++|++++|.++.++ . +. +
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~-------~-~~~l 79 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLS-GNPLSQISAADLAP--FTKLELLNLSSNVLYETL-------D-LESL 79 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECT-TSCCCCCCHHHHTT--CTTCCEEECTTSCCEEEE-------E-ETTC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECc-CCccCcCCHHHhhC--CCcCCEEECCCCcCCcch-------h-hhhc
Confidence 34555666666544444555556667777777 66676666666666 666666666666665431 1 22 5
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++|++|++++|++++.. ..++|++|++++|++++..+.. ++. |++|++++|++++..+..+..+++|++|+
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQG-KKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSS-CEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCC-CCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 56666666666665321 2255666666666665433322 233 55566665555555555555555555555
Q ss_pred CcCCccccccCccC-cCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccc
Q 048443 208 LSHNLLQGKIPKSL-ANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 208 L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
+++|.+++..+..+ ..+++|++|++++|.+++..+ ...
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~--------------------------------------- 189 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVV--------------------------------------- 189 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCC---------------------------------------
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccc---------------------------------------
Confidence 55555554444443 245555555555555543211 111
Q ss_pred hhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc
Q 048443 287 RYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
+++|+.|++++|.+++ +|..+..+++|++|++++|+++
T Consensus 190 ----------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~- 227 (317)
T 3o53_A 190 ----------------------------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227 (317)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-
T ss_pred ----------------------------------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-
Confidence 2457777777777773 4444777777777777777777
Q ss_pred cCchhccCCCCCCEEeCCCCC
Q 048443 367 HIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 367 ~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+|..+..+++|+.|++++|+
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCC
T ss_pred chhhHhhcCCCCCEEEccCCC
Confidence 456666777777777777776
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=231.73 Aligned_cols=250 Identities=26% Similarity=0.322 Sum_probs=166.7
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
++|+++ .+|..+. ++|++|++++|++.. +|. .+++|++|+++ +|++++ +|. . +++|++|++++|.+
T Consensus 48 s~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls-~N~l~~-lp~---~--l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 48 GESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVS-GNQLTS-LPV---L--PPGLLELSIFSNPL 113 (622)
T ss_dssp CSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEEC-SCCCSC-CCC---C--CTTCCEEEECSCCC
T ss_pred cCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcC-CCcCCc-CCC---C--CCCCCEEECcCCcC
Confidence 445555 5665555 678888888887664 343 46778888888 777774 444 3 77788888888877
Q ss_pred CCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc
Q 048443 112 PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
+.+|. .+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .. +|+.|++++|.+++
T Consensus 114 ~~l~~---------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~-~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 114 THLPA---------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PS-ELCKLWAYNNQLTS 175 (622)
T ss_dssp CCCCC---------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC---CT-TCCEEECCSSCCSC
T ss_pred CCCCC---------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc---cC-CCCEEECCCCCCCC
Confidence 77543 24677888888888773 4543 4777888888887773 3332 22 37778888887765
Q ss_pred cCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhh
Q 048443 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKY 271 (486)
Q Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~ 271 (486)
. | ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++. +|. .+++|+.|++++| .+..+|.
T Consensus 176 l-~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N---~L~~lp~-- 238 (622)
T 3g06_A 176 L-P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGN---RLTSLPV-- 238 (622)
T ss_dssp C-C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSS---CCSCCCC--
T ss_pred C-c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCC---ccCcCCC--
Confidence 3 3 345677788888887773 4432 4677778888877763 332 2366777777766 2222331
Q ss_pred hhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhcc
Q 048443 272 FQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANL 351 (486)
Q Consensus 272 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l 351 (486)
.+++|+.|++++|.|+ .+|. .+
T Consensus 239 ------------------------------------------------------~l~~L~~L~Ls~N~L~-~lp~---~~ 260 (622)
T 3g06_A 239 ------------------------------------------------------LPSELKELMVSGNRLT-SLPM---LP 260 (622)
T ss_dssp ------------------------------------------------------CCTTCCEEECCSSCCS-CCCC---CC
T ss_pred ------------------------------------------------------CCCcCcEEECCCCCCC-cCCc---cc
Confidence 1356888888888887 4555 56
Q ss_pred CCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
++|+.|+|++|+|+ .+|..|..+++|+.|+|++|+++
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 77888888888888 66777888888888888877743
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-28 Score=244.07 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=108.8
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
...+++|++|+|++|.+.+..|..|..+++|++|+|+ +|.+++..| +.. +++|++|+|++|.++.+|.
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~------- 97 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LES--LSTLRTLDLNNNYVQELLV------- 97 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECT-TSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEE-------
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEee-CCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCC-------
Confidence 3445588888888888888777888888888888888 888876655 666 7788888888877765432
Q ss_pred ccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc-CCCC
Q 048443 124 TTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM-NGSD 202 (486)
Q Consensus 124 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~ 202 (486)
.++|++|++++|.+++..+. .+++|+.|++++|.+++..|..++.++. |+.|++++|.+++..|..+. .+++
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCc
Confidence 35666666666666644332 2455666666666666555555555554 55555555555555554443 4555
Q ss_pred ccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 203 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|++|+|++|.+++..+ ...+++|++|++++|.++
T Consensus 171 L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC
T ss_pred ccEEecCCCccccccc--cccCCCCCEEECCCCCCC
Confidence 5555555555553311 223455555555555544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=229.66 Aligned_cols=252 Identities=24% Similarity=0.269 Sum_probs=203.6
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccC
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST 128 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~ 128 (486)
+++.|++++|++. .+|..+. ++|++|+++ +|.++. +|. . +++|++|+|++|+++.+|. .++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~-~N~l~~-lp~---~--l~~L~~L~Ls~N~l~~lp~---------~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIP-DNNLTS-LPA---L--PPELRTLEVSGNQLTSLPV---------LPP 101 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEEC-SCCCSC-CCC---C--CTTCCEEEECSCCCSCCCC---------CCT
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEec-CCCCCC-CCC---c--CCCCCEEEcCCCcCCcCCC---------CCC
Confidence 5899999999976 6676665 899999999 999984 555 4 8999999999999998653 368
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|++++|++++ +|. .+++|++|++++|++++ +|..+ ++ |++|++++|.+++. |. .+++|+.|++
T Consensus 102 ~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~l---~~-L~~L~Ls~N~l~~l-~~---~~~~L~~L~L 168 (622)
T 3g06_A 102 GLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVLP---PG-LQELSVSDNQLASL-PA---LPSELCKLWA 168 (622)
T ss_dssp TCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCCC---TT-CCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred CCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCCC---CC-CCEEECcCCcCCCc-CC---ccCCCCEEEC
Confidence 99999999999994 554 57899999999999984 55543 44 99999999999764 33 3478999999
Q ss_pred cCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchh
Q 048443 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~ 288 (486)
++|.+++ +| ..+++|++|++++|.+++ +|. .+++|+.|++++| ....+|.
T Consensus 169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N---~l~~l~~------------------- 218 (622)
T 3g06_A 169 YNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNN---RLTSLPA------------------- 218 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS---CCSSCCC-------------------
T ss_pred CCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCC---cccccCC-------------------
Confidence 9999984 56 457899999999999985 333 2478888888887 2333332
Q ss_pred ccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccC
Q 048443 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHI 368 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 368 (486)
.+++|+.|++++|.+++ +| ..+++|++|++++|+|+ .+
T Consensus 219 -------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 219 -------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp -------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred -------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence 13569999999999994 66 45689999999999999 55
Q ss_pred chhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCC
Q 048443 369 PSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 369 ~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~ 407 (486)
|. .+++|+.|+|++|+ +++|+.|++++|++++.+|.
T Consensus 257 p~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred Cc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 55 67899999999999 56789999999999987765
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=209.11 Aligned_cols=200 Identities=20% Similarity=0.132 Sum_probs=89.5
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S 127 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~ 127 (486)
+|++|++++|++.+..+..|.++++|++|+++ +|.+++..+..+.. +++|++|++++|.++.+ .+..+. +
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQS--LSHLSTLILTGNPIQSL------ALGAFSGL 99 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTT--CTTCCEEECTTCCCCEE------CTTTTTTC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccC--CcCCCEEECCCCccCcc------ChhhhcCC
Confidence 44444444444444444444444444444444 44444444444444 44444444444444433 112222 4
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCccc-ccchhhhcCCCCcEEEccCccccccCCccccCCCCcc--
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGE-LLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR-- 204 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~-- 204 (486)
++|++|++++|++++..+..+..+++|++|++++|.+++. +|..+..++. |++|++++|++++..+..|..+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-CCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 4444444444444433333444444444444444444432 2444444443 44455544444444444443333333
Q ss_pred --EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 205 --MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 205 --~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+|++++|.+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 179 ~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 44555555443322222 2224555555555554444444444555555555444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=204.56 Aligned_cols=193 Identities=18% Similarity=0.186 Sum_probs=141.8
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCC
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
++.++ .+|..+. +++++|++++|++.+..+..|.++++|++|+++ +|.++...+..|.. +++|++|++++|.++
T Consensus 25 ~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~--l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 25 SKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKE--LKNLETLWVTDNKLQ 98 (270)
T ss_dssp TSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSS--CTTCCEEECCSSCCC
T ss_pred CCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcC--CCCCCEEECCCCcCC
Confidence 44444 3555554 578888888888877777788888888888888 88888666666667 888888888888887
Q ss_pred CCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc
Q 048443 113 RFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 113 ~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
.+| +..+. +++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..++. |++|++++|.+++
T Consensus 99 ~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 99 ALP------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-LKELRLYNNQLKR 171 (270)
T ss_dssp CCC------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCSC
T ss_pred cCC------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc-cceeEecCCcCcE
Confidence 753 23334 677888888888887666667777888888888888887555555666766 7888888777777
Q ss_pred cCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 66666777777777777777777555556777777777777777765
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=205.91 Aligned_cols=209 Identities=17% Similarity=0.133 Sum_probs=183.9
Q ss_pred CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCC
Q 048443 22 SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100 (486)
Q Consensus 22 ~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~ 100 (486)
..++.++.|+ ++|.+++..+..|.++++|++|++++|++.+..+..|..+++|++|+++ +|.+++..+..+.. +++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~ 101 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSG--LSS 101 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTT--CTT
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcC--Ccc
Confidence 3455688888 8899998888899999999999999999998888899999999999999 99999988899999 999
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCccccc-CCccccCCCCCCEEECcCCcCcccccchhhhcCCC
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGE-IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGG 178 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~ 178 (486)
|++|++++|.++.++. ..+. +++|++|++++|.+++. +|..|..+++|++|++++|++++..+..+..+..
T Consensus 102 L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~- 174 (276)
T 2z62_A 102 LQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ- 174 (276)
T ss_dssp CCEEECTTSCCCCSTT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-
T ss_pred ccEEECCCCCccccCc------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-
Confidence 9999999999998643 3344 89999999999999863 6899999999999999999999877778887776
Q ss_pred Cc----EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCC
Q 048443 179 LS----VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241 (486)
Q Consensus 179 L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 241 (486)
|+ .|++++|.+.+..+..+.. .+|++|++++|.+++..+..|..+++|++|++++|++....
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 77 8999999999877766654 48999999999999776677899999999999999998543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=226.98 Aligned_cols=237 Identities=19% Similarity=0.116 Sum_probs=200.1
Q ss_pred CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCC
Q 048443 23 DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101 (486)
Q Consensus 23 ~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L 101 (486)
.++.++.|+ ++|.+++..|..|+.+++|++|+|++|.+.+..| |..+++|++|+++ +|.+++.. . .++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls-~N~l~~l~-----~--~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN-NNYVQELL-----V--GPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECC-SSEEEEEE-----E--CTTC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEec-CCcCCCCC-----C--CCCc
Confidence 345677777 8899999888999999999999999999887665 9999999999999 99998643 3 6899
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhh-hcCCCCc
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLG-NFSGGLS 180 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~-~~~~~L~ 180 (486)
++|++++|.++.++. . .+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .++. |+
T Consensus 102 ~~L~L~~N~l~~~~~------~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~-L~ 172 (487)
T 3oja_A 102 ETLHAANNNISRVSC------S--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LE 172 (487)
T ss_dssp CEEECCSSCCCCEEE------C--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CC
T ss_pred CEEECcCCcCCCCCc------c--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc-cc
Confidence 999999999987632 1 168999999999999988888999999999999999999988888886 6776 99
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
.|++++|.+++..+ +..+++|+.|+|++|.+++. |..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.
T Consensus 173 ~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 173 HLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred EEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence 99999999988743 44689999999999999964 5558999999999999999986 67779999999999999984
Q ss_pred CCccccCChhhhhccccccccccc
Q 048443 261 PCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 261 ~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
.....+...+..++.++.+++.
T Consensus 249 --l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 --FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp --BCHHHHHHHHTTCHHHHHHHHH
T ss_pred --CcCcchHHHHHhCCCCcEEecc
Confidence 3322333446677777776665
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-25 Score=199.98 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=156.7
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc-ccccCCchhccccCCCCcEEEccC-CCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK-IHGNIPKWLLNPSMKNFSYLNLSK-NYFPRFDQ 116 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~-i~~~~p~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 116 (486)
.+|. +. ++|++|++++|++.+..+..|.++++|++|+++ +|. ++...+..|.. +++|++|++++ |.++.++
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~~l~~i~~~~f~~--l~~L~~L~l~~~n~l~~i~- 97 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYN--LSKVTHIEIRNTRNLTYID- 97 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEE-CCSSCCEECTTTEES--CTTCCEEEEEEETTCCEEC-
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCC-CCCCcceeCHhHcCC--CcCCcEEECCCCCCeeEcC-
Confidence 3555 43 378888998888887777788888889999988 886 77777777877 88889999888 8888763
Q ss_pred CCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC---EEECcCC-cCcccccchhhhcCCCCc-EEEccCcccc
Q 048443 117 HPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY---VLDLSDN-NLSGELLQCLGNFSGGLS-VLSLQGKNFF 190 (486)
Q Consensus 117 l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~Ls~N-~i~~~~~~~l~~~~~~L~-~L~L~~n~i~ 190 (486)
+..+. +++|++|++++|++++ +|. |..+++|+ +|++++| .+++..+..|..++. |+ +|++++|+++
T Consensus 98 -----~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~-L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 98 -----PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN-ETLTLKLYNNGFT 169 (239)
T ss_dssp -----TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS-SEEEEECCSCCCC
T ss_pred -----HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc-ceeEEEcCCCCCc
Confidence 23444 7888888888888884 665 77888887 8889888 888666666777776 88 8899888888
Q ss_pred ccCCccccCCCCccEEECcCCc-cccccCccCcCC-CCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNL-LQGKIPKSLANC-AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
...+..|.. ++|++|++++|. +++..+..|..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 170 ~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 655555655 788999999994 886667778888 8899999999988754443 5677888877664
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=196.47 Aligned_cols=200 Identities=19% Similarity=0.186 Sum_probs=176.7
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.+.+.++++++++.. +|..+. +++++|+++ +|.+++..+..|.. +++|++|++++|.++.++ +..+.
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~i~------~~~~~~ 83 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQ-SNKLSSLPSKAFHR--LTKLRLLYLNDNKLQTLP------AGIFKE 83 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECC-SSCCSCCCTTSSSS--CTTCCEEECCSSCCSCCC------TTTTSS
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECc-CCCCCeeCHHHhcC--CCCCCEEECCCCccCeeC------hhhhcC
Confidence 357899999999764 565554 689999999 99999888888988 999999999999999864 23344
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++. |++|++++|.+.+..+..|..+++|++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC-CCEEECCCCcCCccCHhHccCCccccee
Confidence 899999999999999777778899999999999999999877777888887 9999999999998888889999999999
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 999999997777789999999999999999998777789999999999999973
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=201.43 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=93.1
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
...+++|+.|++++|.+... ..+..+++|++|+++ +|.+++. ..+.. +++|++|++++|.++.++ +.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~-~n~l~~~--~~l~~--l~~L~~L~L~~n~l~~~~------~~ 103 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALG-GNKLHDI--SALKE--LTNLTYLILTGNQLQSLP------NG 103 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECT-TSCCCCC--GGGTT--CTTCCEEECTTSCCCCCC------TT
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECC-CCCCCCc--hhhcC--CCCCCEEECCCCccCccC------hh
Confidence 44566677777766665432 245566666666666 6666542 34545 666666666666655542 22
Q ss_pred ccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 124 TTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 124 ~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
.+. +++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..++. |++|++++|++++..+..|..+++
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-LTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-CCEEECCCCCcCccCHHHhcCCcc
Confidence 222 455555555555555444444555555555555555555433333444443 555555555554444444444445
Q ss_pred ccEEECcCCccccccCccCcCCCCCCEEEccCCcc
Q 048443 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237 (486)
Q Consensus 203 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 237 (486)
|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 55555555544444444444444444444444443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=197.90 Aligned_cols=200 Identities=20% Similarity=0.171 Sum_probs=106.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
++++++++.+++++|++.. +|..+. +++++|+++ +|.+++..+..+.. +++|++|++++|.++.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~-~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLS-ENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQV------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECT-TSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEEC-------
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcC-CCcCCccCHHHhhc--CCCCCEEECCCCccCcccC-------
Confidence 3445555555555555432 232222 455555555 55555555555555 5555555555555554322
Q ss_pred ccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCc
Q 048443 124 TTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203 (486)
Q Consensus 124 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 203 (486)
...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..++. |++|++++|++++..+..|..+++|
T Consensus 73 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-CCEEECCCCCCCccChhhcccccCC
Confidence 111455555555555555 44555555555555555555555444445555554 5555555555555555555555556
Q ss_pred cEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 204 RMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+.|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.+++++|
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 66666666555443444455556666666666555 34444455555666665554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=198.07 Aligned_cols=190 Identities=21% Similarity=0.152 Sum_probs=167.3
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
+++.++ .+|..+. ++++.|+|++|++.+..+..|..+++|++|+++ +|.+++..+. .. +++|++|++++|++
T Consensus 18 ~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~--~~--l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 18 DKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQVD--GT--LPVLGTLDLSHNQL 89 (290)
T ss_dssp TTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECT-TSCCCEEECC--SC--CTTCCEEECCSSCC
T ss_pred CCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECC-CCccCcccCC--CC--CCcCCEEECCCCcC
Confidence 455555 4666665 689999999999999889999999999999999 9999976554 45 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.+| ..+. +++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++ |+.|++++|+++
T Consensus 90 ~~l~-------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 161 (290)
T 1p9a_G 90 QSLP-------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLT 161 (290)
T ss_dssp SSCC-------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCS
T ss_pred CcCc-------hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-CCEEECCCCcCC
Confidence 9854 3444 899999999999999777788999999999999999999776677788887 999999999999
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+..+..|..+++|++|++++|.++ .+|..+....+|+.+++++|++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 888888899999999999999999 77888888999999999999986
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-24 Score=198.11 Aligned_cols=198 Identities=20% Similarity=0.232 Sum_probs=124.9
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|.++ .++ .+..+++|++|++++|.+++ + ..+..++. |++|++++|.+++..+..|..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTN-LTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCC-CCEEECCCCccCccChhHhcCCcCCCEE
Confidence 444555555555544 222 34555555555555555553 1 24444444 5555555555555555555555666666
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
++++|.+++..+..|..+++|++|++++|.+++..+..+..+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------------- 156 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-------------------------------------- 156 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------------------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC--------------------------------------
Confidence 666666654444455556666666666665554333332222
Q ss_pred hhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc
Q 048443 287 RYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
++|+.|++++|++++..+..+..+++|++|++++|++++
T Consensus 157 -----------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 157 -----------------------------------------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp -----------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred -----------------------------------------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 346666677777776666667778888888888888887
Q ss_pred cCchhccCCCCCCEEeCCCCC----CCCCCEEeccCCccccCCCCC
Q 048443 367 HIPSCLGSLTNLESLDLSKNR----LTFLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 367 ~~~~~~~~l~~L~~L~Ls~N~----l~~L~~L~ls~N~l~~~~p~~ 408 (486)
..+..+..+++|++|++++|+ ++.|+.++++.|.++|.+|..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred cCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCc
Confidence 777777888888888888887 567889999999999999974
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-25 Score=231.67 Aligned_cols=347 Identities=12% Similarity=0.002 Sum_probs=192.6
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccC-CC-CCCeeccCCCCc-cccc-CCchhccccCCCCcEEEccCCCCCCCCCCCCCC
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGS-LS-SLERLDTFPPMK-IHGN-IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~-l~-~L~~L~L~~~n~-i~~~-~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
.+++|++|+|++|.+.+..+..+.. ++ +|++|+++ ++. +... ++..... +++|++|+|++|.++.... ..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~-~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~~~~~~~--~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD-KCSGFTTDGLLSIVTH--CRKIKTLLMEESSFSEKDG--KWL 184 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE-SCEEEEHHHHHHHHHH--CTTCSEEECTTCEEECCCS--HHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc-CCCCcCHHHHHHHHhh--CCCCCEEECccccccCcch--hHH
Confidence 5778888888888776665555555 33 48888887 554 2211 2222335 7888888888887654210 000
Q ss_pred Ccccc-cCccCeeecccCcccc----cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc---ccC
Q 048443 122 PWTTL-STKIRHYLISKNNLTG----EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF---GTT 193 (486)
Q Consensus 122 p~~~~-~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~---~~~ 193 (486)
+.... +++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..++. |++|+++..... ...
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAAN-LEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTT-CCEEEECBCCCCTTCTTS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhH-HHhhcccccccccchHHH
Confidence 00112 6788888888888762 334445677888888888888774 5667777776 888888753222 122
Q ss_pred CccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCC-ccccCCCCCCEEEcCccCCCccccCChhhh
Q 048443 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP-IWLGSLLELNILVLIQQLPCFMGKLPSKYF 272 (486)
Q Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~ 272 (486)
...+..+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|+.|+++++ .........+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~---~~~~~l~~~~ 338 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV---IGDRGLEVLA 338 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG---GHHHHHHHHH
T ss_pred HHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc---cCHHHHHHHH
Confidence 334455666666666665333 455555666666677766666543322 22455666666666532 2221222223
Q ss_pred hcccccccccccc----------chhcccc------------ccccc-----ccc---ccccCCCCcceEEee----cCC
Q 048443 273 QCWNAMKFANSSQ----------LRYMENF------------LSSYF-----SFD---FYRYFPQNDYSITMS----NEG 318 (486)
Q Consensus 273 ~~l~~L~~l~~~~----------~~~~~~~------------~~~~~-----~~~---~~~~~~~~~~~l~~~----~~~ 318 (486)
..+++|+.+++++ +..+... ....+ ... .+....+.+..++++ .+.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 4455555555552 1111000 00000 000 000112345556664 222
Q ss_pred Ccccc--------CcccCcccEEEccccc--ccccCccchh-ccCCCCeeeCCCcccCc-cCchhccCCCCCCEEeCCCC
Q 048443 319 QMMTH--------DKIPDILKGIILSSNR--FDGEMPTSIA-NLKGLQVLGLASNNLQG-HIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 319 ~~~~~--------~~~~~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N 386 (486)
+.... ...+++|+.|++++|. +++..+..+. .+++|++|++++|++++ .++..+.++++|++|++++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 22210 1125667777776432 5544444333 36777778887777765 23444566777888888877
Q ss_pred C------------CCCCCEEeccCCcccc
Q 048443 387 R------------LTFLEFFNATHNNLTG 403 (486)
Q Consensus 387 ~------------l~~L~~L~ls~N~l~~ 403 (486)
+ +++|++|++++|+++.
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6 5677788888887664
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-24 Score=208.98 Aligned_cols=199 Identities=20% Similarity=0.169 Sum_probs=99.7
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCc----ccccCCC-CCCeeccCCCCcccccCCchhccccC-----CCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELP----ASIGSLS-SLERLDTFPPMKIHGNIPKWLLNPSM-----KNF 101 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~-~L~~L~L~~~n~i~~~~p~~~~~~~l-----~~L 101 (486)
+.|++++.+|..+...++|++|+|++|.+.+..+ ..|..++ +|++|+++ +|.+++..+..+.. + ++|
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~--~l~~~~~~L 82 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS-GNSLGFKNSDELVQ--ILAAIPANV 82 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC-SSCGGGSCHHHHHH--HHHTSCTTC
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc-CCCCCHHHHHHHHH--HHhccCCCc
Confidence 4456666666555555556666666666655555 5556666 66666666 66666655555544 3 566
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-----c-CccCeeecccCcccccCCcccc----C-CCCCCEEECcCCcCccccc-
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-----S-TKIRHYLISKNNLTGEIPSWIC----N-LSSLYVLDLSDNNLSGELL- 169 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-----~-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~Ls~N~i~~~~~- 169 (486)
++|+|++|.++.. .+..+. . ++|++|++++|++++..+..+. . .++|++|++++|.+++..+
T Consensus 83 ~~L~Ls~n~l~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYK------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp CEEECCSSCGGGS------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred cEEECcCCcCChH------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 6666666665542 111111 1 4556666666655543332222 2 1355555555555553222
Q ss_pred ---chhhhcCCCCcEEEccCccccccCCccc----cCC-CCccEEECcCCccccc----cCccCcC-CCCCCEEEccCCc
Q 048443 170 ---QCLGNFSGGLSVLSLQGKNFFGTTPDTF----MNG-SDLRMVDLSHNLLQGK----IPKSLAN-CAVLEISDLRNNQ 236 (486)
Q Consensus 170 ---~~l~~~~~~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~ 236 (486)
..+...+.+|++|++++|++++..+..+ ... ++|++|+|++|.+++. ++..+.. .++|++|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2222333125555555555554443222 222 3555555555555431 2223333 2355555555555
Q ss_pred ccc
Q 048443 237 IND 239 (486)
Q Consensus 237 l~~ 239 (486)
+.+
T Consensus 237 l~~ 239 (362)
T 3goz_A 237 LHG 239 (362)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-24 Score=209.72 Aligned_cols=199 Identities=17% Similarity=0.101 Sum_probs=137.8
Q ss_pred EeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCC----chhccccCC-CCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 52 WLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIP----KWLLNPSMK-NFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 52 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p----~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
.+++++|++.+.+|..+...++|++|+++ +|.+++..+ ..+.. ++ +|++|+|++|.++.. .+..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~------~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFK------NSDELV 72 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGS------CHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHH------HHHHHH
Confidence 46788999888888877777779999999 999987776 66777 77 899999999988764 222232
Q ss_pred -c-----CccCeeecccCcccccCCcc----ccCC-CCCCEEECcCCcCcccccchhhhc----CCCCcEEEccCccccc
Q 048443 127 -S-----TKIRHYLISKNNLTGEIPSW----ICNL-SSLYVLDLSDNNLSGELLQCLGNF----SGGLSVLSLQGKNFFG 191 (486)
Q Consensus 127 -~-----~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~N~i~~~~~~~l~~~----~~~L~~L~L~~n~i~~ 191 (486)
+ ++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+... +.+|++|++++|.+.+
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 2 78888888888888655553 3344 788888888888886655555442 3248888888888875
Q ss_pred cCC----ccccCCC-CccEEECcCCccccccCcc----CcCC-CCCCEEEccCCccccC----CCccccC-CCCCCEEEc
Q 048443 192 TTP----DTFMNGS-DLRMVDLSHNLLQGKIPKS----LANC-AVLEISDLRNNQINDT----FPIWLGS-LLELNILVL 256 (486)
Q Consensus 192 ~~~----~~~~~l~-~L~~L~L~~N~l~~~~p~~----~~~l-~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l 256 (486)
... ..+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+. ++..+.. .++|+.|++
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 433 3334444 7888888888887655443 3344 4888888888887653 2223333 235666665
Q ss_pred Ccc
Q 048443 257 IQQ 259 (486)
Q Consensus 257 ~~n 259 (486)
++|
T Consensus 233 s~N 235 (362)
T 3goz_A 233 CLN 235 (362)
T ss_dssp CSS
T ss_pred cCC
Confidence 555
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=185.02 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=96.6
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+|..+. ++++.|+|++|++.+..+..|.++++|++|+++ +|.+++..+..+.. +++|++|++++|.++.+
T Consensus 29 ~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~----- 98 (251)
T 3m19_A 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD-YNQLQTLSAGVFDD--LTELGTLGLANNQLASL----- 98 (251)
T ss_dssp CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTT--CTTCCEEECTTSCCCCC-----
T ss_pred cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECC-CCcCCccCHhHhcc--CCcCCEEECCCCccccc-----
Confidence 444444 467777777777776666667777777777777 67777666666666 66666666666666554
Q ss_pred CCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccC
Q 048443 120 VLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMN 199 (486)
Q Consensus 120 l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~ 199 (486)
.+..|..+++|++|++++|++++..+..+..++. |++|++++|++++..+..|..
T Consensus 99 ------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 99 ------------------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-LKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp ------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTT
T ss_pred ------------------------ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc-ccEEECcCCcCCccCHHHcCc
Confidence 2333444444444444444444333333444443 555555555555444445555
Q ss_pred CCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 200 GSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 200 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666666666666665555556666666666666666654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-25 Score=230.03 Aligned_cols=347 Identities=9% Similarity=-0.025 Sum_probs=170.2
Q ss_pred cCCcccccCCcCCCC-CC-CCCEeeCcCCCC-CC-CCcccccCCCCCCeeccCCCCccccc----CCchhccccCCCCcE
Q 048443 32 RLSDFSGQIPPSLGN-LN-QLQWLDLAFNNF-LR-ELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSY 103 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~-l~-~L~~L~Ls~n~~-~~-~~~~~~~~l~~L~~L~L~~~n~i~~~----~p~~~~~~~l~~L~~ 103 (486)
+++.+++..+..+.. ++ +|++|+|++|.. .. .++.....+++|++|+++ +|.+++. ++..... +++|++
T Consensus 120 ~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~~~~~~~~~l~~~~~~--~~~L~~ 196 (592)
T 3ogk_B 120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME-ESSFSEKDGKWLHELAQH--NTSLEV 196 (592)
T ss_dssp ESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECT-TCEEECCCSHHHHHHHHH--CCCCCE
T ss_pred eccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECc-cccccCcchhHHHHHHhc--CCCccE
Confidence 444444444433333 22 366666655541 10 011122345566666665 5555443 2222333 555666
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECc----------------------
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS---------------------- 160 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls---------------------- 160 (486)
|++++|.++.+..- -++..+. +++|++|++++|.+.+ ++..+..+++|+.|+++
T Consensus 197 L~L~~n~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 197 LNFYMTEFAKISPK--DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp EECTTCCCSSCCHH--HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred EEeeccCCCccCHH--HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 66665555422100 0111111 4555555555555542 33444444444444443
Q ss_pred -----CCcCcccccchhhhcCCCCcEEEccCccccccCC-ccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccC
Q 048443 161 -----DNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234 (486)
Q Consensus 161 -----~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 234 (486)
++.. ..+|..+..+++ |++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++
T Consensus 274 ~L~l~~~~~-~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EEEETTCCT-TTGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCccccch-hHHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 3221 133444444554 6666666666543322 2234556666666662222222222334456666666662
Q ss_pred -----------CccccCCC-ccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch---hccccccccccc
Q 048443 235 -----------NQINDTFP-IWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR---YMENFLSSYFSF 299 (486)
Q Consensus 235 -----------N~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~---~~~~~~~~~~~~ 299 (486)
|.+++... .....+++|+.|+++.+. +.+..+..+...+++|+.++++.+. .+...... .+.
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~ 428 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD--ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGV 428 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC--CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCC--ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHH
Confidence 34432211 122345666666664432 2222233323335566666664221 11100000 000
Q ss_pred cccccCCCCcceEEeecCC--Cccc----cCcccCcccEEEcccccccc-cCccchhccCCCCeeeCCCcccCcc-Cchh
Q 048443 300 DFYRYFPQNDYSITMSNEG--QMMT----HDKIPDILKGIILSSNRFDG-EMPTSIANLKGLQVLGLASNNLQGH-IPSC 371 (486)
Q Consensus 300 ~~~~~~~~~~~~l~~~~~~--~~~~----~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 371 (486)
.....--+.++.++++.+. +... ....+++|+.|++++|++++ .++..+..+++|++|++++|.+++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 0000002345667765322 2211 12236789999999999986 3455668899999999999998754 3444
Q ss_pred ccCCCCCCEEeCCCCCCC
Q 048443 372 LGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 372 ~~~l~~L~~L~Ls~N~l~ 389 (486)
+..+++|++|++++|+++
T Consensus 509 ~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHCSSCCEEEEESCBCC
T ss_pred HHhcCccCeeECcCCcCC
Confidence 567999999999999954
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-24 Score=212.17 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=32.8
Q ss_pred CcccEEEcccccccc----cCccch-hccCCCCeeeCCCcccCccCc
Q 048443 328 DILKGIILSSNRFDG----EMPTSI-ANLKGLQVLGLASNNLQGHIP 369 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~~ 369 (486)
++|+.|+|++|.+++ .+|..+ .++++|++|++++|.+++..+
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 558888888888886 367666 567889999999999886664
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=182.84 Aligned_cols=175 Identities=19% Similarity=0.186 Sum_probs=141.6
Q ss_pred CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCC
Q 048443 73 SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNL 151 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l 151 (486)
..++++++ ++.++ .+|..+ .++++.|++++|.++.+ .+..+. +++|++|++++|.+++..+..|..+
T Consensus 15 ~~~~l~~~-~~~l~-~~p~~~----~~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 15 GKKEVDCQ-GKSLD-SVPSGI----PADTEKLDLQSTGLATL------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp GGTEEECT-TCCCS-SCCSCC----CTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCeEEecC-CCCcc-ccCCCC----CCCCCEEEccCCCcCcc------CHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 34555555 55555 334433 34566666666666654 223334 6777777777777776777788999
Q ss_pred CCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEE
Q 048443 152 SSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISD 231 (486)
Q Consensus 152 ~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 231 (486)
++|++|++++|++++..+..|..++. |++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcccccChhHhcccCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 99999999999999777777888887 99999999999988888899999999999999999977777899999999999
Q ss_pred ccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 232 LRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 232 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+++|++.+..+..+..+++|+.|++++|.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 99999998888899999999999999984
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-23 Score=186.69 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=180.7
Q ss_pred CCcccccCccccee-eee--hhccCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCC-CCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTI-LLF--YLMTSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNN-FLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~-~~~--~~~~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~ 75 (486)
|..|.|...+..++ |.. .... .++.++.|+ ++|++++..+..|+.+++|++|++++|+ +..+.+..|.++++|+
T Consensus 5 p~~C~C~~~~~~~v~c~~l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 5 SPPCECHQEEDFRVTCKDIQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp SSSCSEEECSTTEEEECSCSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred CCCCeeCCCCcceeEccCccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence 67899987344433 322 1222 445677777 8899998888899999999999999997 8877778999999999
Q ss_pred eeccCCC-CcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccC---eeecccC-cccccCCcccc
Q 048443 76 RLDTFPP-MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIR---HYLISKN-NLTGEIPSWIC 149 (486)
Q Consensus 76 ~L~L~~~-n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~---~L~Ls~n-~l~~~~~~~~~ 149 (486)
+|+++ + |.++...+..|.. +++|++|++++|.++.+|. +. +++|+ +|++++| ++++..+..|.
T Consensus 84 ~L~l~-~~n~l~~i~~~~f~~--l~~L~~L~l~~n~l~~lp~--------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 84 HIEIR-NTRNLTYIDPDALKE--LPLLKFLGIFNTGLKMFPD--------LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp EEEEE-EETTCCEECTTSEEC--CTTCCEEEEEEECCCSCCC--------CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred EEECC-CCCCeeEcCHHHhCC--CCCCCEEeCCCCCCccccc--------cccccccccccEEECCCCcchhhcCccccc
Confidence 99999 8 9999888888988 9999999999999998653 23 56776 9999999 99977777899
Q ss_pred CCCCCC-EEECcCCcCcccccchhhhcCCCCcEEEccCcc-ccccCCccccCC-CCccEEECcCCccccccCccCcCCCC
Q 048443 150 NLSSLY-VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN-FFGTTPDTFMNG-SDLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 150 ~l~~L~-~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
++++|+ +|++++|+++ .+|........ |+.|++++|+ +++..+..|..+ ++|++|++++|.+++ +|.. .+++
T Consensus 153 ~l~~L~~~L~l~~n~l~-~i~~~~~~~~~-L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~ 227 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEH 227 (239)
T ss_dssp TTBSSEEEEECCSCCCC-EECTTTTTTCE-EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTT
T ss_pred chhcceeEEEcCCCCCc-ccCHhhcCCCC-CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--Hhcc
Confidence 999999 9999999999 55555444455 9999999995 998888889999 999999999999984 5543 6789
Q ss_pred CCEEEccCCc
Q 048443 227 LEISDLRNNQ 236 (486)
Q Consensus 227 L~~L~L~~N~ 236 (486)
|+.|+++++.
T Consensus 228 L~~L~l~~~~ 237 (239)
T 2xwt_C 228 LKELIARNTW 237 (239)
T ss_dssp CSEEECTTC-
T ss_pred CceeeccCcc
Confidence 9999998763
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=202.72 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=47.9
Q ss_pred CcccEEEccccc-ccccCccchhccCCCCeeeCCCcc-cCccCchhccCCCCCCEEeCCCCCCC---------CCCEEec
Q 048443 328 DILKGIILSSNR-FDGEMPTSIANLKGLQVLGLASNN-LQGHIPSCLGSLTNLESLDLSKNRLT---------FLEFFNA 396 (486)
Q Consensus 328 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~L~~L~l 396 (486)
++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++ .++.|++
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI 300 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEE
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEE
Confidence 345566666665 444555556666666666666663 22121224556666666666666 32 3667778
Q ss_pred cCCccccCCCCC
Q 048443 397 THNNLTGPIPQA 408 (486)
Q Consensus 397 s~N~l~~~~p~~ 408 (486)
++|++++..|..
T Consensus 301 ~~n~l~~~~~~~ 312 (336)
T 2ast_B 301 NCSHFTTIARPT 312 (336)
T ss_dssp SCCCSCCTTCSS
T ss_pred ecccCccccCCc
Confidence 888899888764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-23 Score=196.60 Aligned_cols=199 Identities=19% Similarity=0.143 Sum_probs=166.1
Q ss_pred CCCCCCEeeCcCCCCCCCCcccc--cCCCCCCeeccCCCCcccccCC----chhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 46 NLNQLQWLDLAFNNFLRELPASI--GSLSSLERLDTFPPMKIHGNIP----KWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~--~~l~~L~~L~L~~~n~i~~~~p----~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
.+++|++|++++|++.+..|..+ ..+++|++|+++ +|.+++..+ ..+.. +++|++|++++|.++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~----- 160 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLR-NVSWATGRSWLAELQQWL--KPGLKVLSIAQAHSPAF----- 160 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE-SCCCSSTTSSHHHHHTTB--CSCCCEEEEECCSSCCC-----
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEee-cccccchhhhhHHHHhhh--ccCCCEEEeeCCCcchh-----
Confidence 35679999999999999999888 899999999999 999997655 44556 99999999999999886
Q ss_pred CCCcccc-cCccCeeecccCccccc--C--CccccCCCCCCEEECcCCcCcccccc----hhhhcCCCCcEEEccCcccc
Q 048443 120 VLPWTTL-STKIRHYLISKNNLTGE--I--PSWICNLSSLYVLDLSDNNLSGELLQ----CLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 120 l~p~~~~-~~~L~~L~Ls~n~l~~~--~--~~~~~~l~~L~~L~Ls~N~i~~~~~~----~l~~~~~~L~~L~L~~n~i~ 190 (486)
.+..+. +++|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+..++. |++|++++|++.
T Consensus 161 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~-L~~L~Ls~N~l~ 237 (310)
T 4glp_A 161 -SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQ-PHSLDLSHNSLR 237 (310)
T ss_dssp -CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCC-CSSEECTTSCCC
T ss_pred -hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCC-CCEEECCCCCCC
Confidence 345555 89999999999998652 2 234578999999999999997 3333 2456676 999999999999
Q ss_pred ccCCccccCC---CCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 191 GTTPDTFMNG---SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 191 ~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|.
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence 9888777766 69999999999999 6777664 8999999999999865 33 6788999999999973
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-24 Score=211.06 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=49.1
Q ss_pred CcccEEEccccccccc----Cccchhc--cCCCCeeeCCCcccCc----cCchhc-cCCCCCCEEeCCCCCCC
Q 048443 328 DILKGIILSSNRFDGE----MPTSIAN--LKGLQVLGLASNNLQG----HIPSCL-GSLTNLESLDLSKNRLT 389 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~ 389 (486)
++|+.|+|++|.+++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4577888888888754 4566644 8999999999999997 477776 66899999999988854
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=191.46 Aligned_cols=226 Identities=20% Similarity=0.224 Sum_probs=176.4
Q ss_pred CCCCEeeCcCCCCCCCCcc---cccCCCCCCeeccCCCCcccccCCchh--ccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 48 NQLQWLDLAFNNFLRELPA---SIGSLSSLERLDTFPPMKIHGNIPKWL--LNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~---~~~~l~~L~~L~L~~~n~i~~~~p~~~--~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
..++.+.++++.+....-. .+..+++|++|+++ +|.+.+..|..+ .. +++|++|++++|.++..... ++
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~---~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLE-DLKITGTMPPLPLEAT--GLALSSLRLRNVSWATGRSW---LA 137 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEE-SCCCBSCCCCCSSSCC--CBCCSSCEEESCCCSSTTSS---HH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEee-CCEeccchhhhhhhcc--CCCCCEEEeecccccchhhh---hH
Confidence 4578888888876432111 12345779999999 999999999888 67 99999999999999853110 00
Q ss_pred -cccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCccc--c--cchhhhcCCCCcEEEccCccccccCC--
Q 048443 123 -WTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGE--L--LQCLGNFSGGLSVLSLQGKNFFGTTP-- 194 (486)
Q Consensus 123 -~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~--~--~~~l~~~~~~L~~L~L~~n~i~~~~~-- 194 (486)
..+. +++|++|++++|++++..+..|..+++|++|++++|++.+. . +..+..++. |++|++++|+++...+
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMETPTGVC 216 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCCHHHHH
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCchHHHH
Confidence 1122 78999999999999988888999999999999999998642 2 233466776 9999999999964322
Q ss_pred c-cccCCCCccEEECcCCccccccCccCcCC---CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 195 D-TFMNGSDLRMVDLSHNLLQGKIPKSLANC---AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 195 ~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++| ....+|.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N---~l~~~~~- 289 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN---RLNRAPQ- 289 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC---CCCSCCC-
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC---cCCCCch-
Confidence 1 25678999999999999998778777776 69999999999998 5566654 79999999998 4555554
Q ss_pred hhhccccccccccccchh
Q 048443 271 YFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~ 288 (486)
+..+++|+.+++++|..
T Consensus 290 -~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp -TTSCCCCSCEECSSTTT
T ss_pred -hhhCCCccEEECcCCCC
Confidence 67789999999999854
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=188.23 Aligned_cols=200 Identities=25% Similarity=0.274 Sum_probs=165.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+++.+.++ +.++++|++|++++|.+... + .+..+++|++|+++ +|.+.+..+ +.. +++|++|++++|.+
T Consensus 27 ~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~-~n~i~~~~~--~~~--l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 27 GKSNVTDTVT--QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELK-DNQITDLAP--LKN--LTKITELELSGNPL 97 (308)
T ss_dssp TCSSTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTT--CCSCCEEECCSCCC
T ss_pred CCCCcCceec--HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEcc-CCcCCCChh--Hcc--CCCCCEEEccCCcC
Confidence 4455555443 55788999999999997654 4 68899999999999 999987555 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.++ .+. +++|++|++++|++++ ++ .+..+++|++|++++|.+++..+ +..++. |+.|++++|.++
T Consensus 98 ~~~~--------~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L~l~~n~l~ 164 (308)
T 1h6u_A 98 KNVS--------AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTN-LQYLSIGNAQVS 164 (308)
T ss_dssp SCCG--------GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCC
T ss_pred CCch--------hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-ccEEEccCCcCC
Confidence 8753 233 7999999999999985 44 38999999999999999985443 778887 999999999998
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 7544 8889999999999999985433 8889999999999999986653 888999999999987
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-23 Score=200.88 Aligned_cols=255 Identities=18% Similarity=0.137 Sum_probs=181.8
Q ss_pred CCCEeeCcCCCCCCCCcccccCC--CCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 49 QLQWLDLAFNNFLRELPASIGSL--SSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l--~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
.++.+++++|.+. +..+..+ ++++.|+++ +|.+.+..+. +.. +++|++|++++|.++... ++..+.
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~-~n~l~~~~~~-~~~--~~~L~~L~L~~~~l~~~~-----~~~~~~ 115 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCP-RSFMDQPLAE-HFS--PFRVQHMDLSNSVIEVST-----LHGILS 115 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECT-TCEECSCCCS-CCC--CBCCCEEECTTCEECHHH-----HHHHHT
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcC-Cccccccchh-hcc--CCCCCEEEccCCCcCHHH-----HHHHHh
Confidence 4788899888765 5566666 888999998 8888877665 445 888999999988775310 122333
Q ss_pred -cCccCeeecccCcccccCCccccCCCCCCEEECcCC-cCccc-ccchhhhcCCCCcEEEccCc-ccccc-CCccccCCC
Q 048443 127 -STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN-NLSGE-LLQCLGNFSGGLSVLSLQGK-NFFGT-TPDTFMNGS 201 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~i~~~-~~~~l~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~ 201 (486)
+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..++. |++|++++| .+++. ++..+..++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcChHHHHHHHHhcc
Confidence 788999999999888777778888899999999988 67653 5566777776 999999988 88754 456677788
Q ss_pred -CccEEECcCC--ccc-cccCccCcCCCCCCEEEccCCc-cccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccc
Q 048443 202 -DLRMVDLSHN--LLQ-GKIPKSLANCAVLEISDLRNNQ-INDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWN 276 (486)
Q Consensus 202 -~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~ 276 (486)
+|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|+++++. .+....+..
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-----~~~~~~~~~-- 267 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-----DIIPETLLE-- 267 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-----TCCGGGGGG--
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-----CCCHHHHHH--
Confidence 8999999998 444 3456667788899999999988 666677778888888888887762 111110000
Q ss_pred cccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhcc-CCCC
Q 048443 277 AMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANL-KGLQ 355 (486)
Q Consensus 277 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~ 355 (486)
...+++|+.|++++| ++. ..+..+ .+++
T Consensus 268 -----------------------------------------------l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~ 296 (336)
T 2ast_B 268 -----------------------------------------------LGEIPTLKTLQVFGI-VPD---GTLQLLKEALP 296 (336)
T ss_dssp -----------------------------------------------GGGCTTCCEEECTTS-SCT---TCHHHHHHHST
T ss_pred -----------------------------------------------HhcCCCCCEEeccCc-cCH---HHHHHHHhhCc
Confidence 001356888888887 432 233344 3477
Q ss_pred eeeCCCcccCccCchhccC
Q 048443 356 VLGLASNNLQGHIPSCLGS 374 (486)
Q Consensus 356 ~L~Ls~N~l~~~~~~~~~~ 374 (486)
.|++++|++++..|..++.
T Consensus 297 ~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 297 HLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TSEESCCCSCCTTCSSCSS
T ss_pred ceEEecccCccccCCcccc
Confidence 7778888888877776654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=190.22 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=86.3
Q ss_pred CcccccCcccceeeeehhccCC----Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCc-ccccCCCCCC
Q 048443 2 KRCLCSELTRLTILLFYLMTSD----SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELP-ASIGSLSSLE 75 (486)
Q Consensus 2 ~~c~c~~l~~l~~~~~~~~~~~----~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~ 75 (486)
.+|.|+. +.+.|.....+.. ++.++.|+ ++|+|+...+.+|+++++|++|+|++|++.+.+| .+|.++++++
T Consensus 5 ~~C~C~~--~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 5 RICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp SSSEEET--TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CccEeeC--CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 3599985 2344543322222 22344444 4444444333445555555555555555433332 3444454444
Q ss_pred e-eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeeccc-CcccccCCccccCCC
Q 048443 76 R-LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISK-NNLTGEIPSWICNLS 152 (486)
Q Consensus 76 ~-L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~~l~ 152 (486)
+ +.+. +|+++...|..|.. +++|++|++++|+++.+|. ..+. ..++..|++.+ ++++...+..|..+.
T Consensus 83 ~~l~~~-~N~l~~l~~~~f~~--l~~L~~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 83 EIRIEK-ANNLLYINPEAFQN--LPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp EEEEEE-ETTCCEECTTSBCC--CTTCCEEEEEEECCSSCCC------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred hhhccc-CCcccccCchhhhh--ccccccccccccccccCCc------hhhcccchhhhhhhccccccccccccchhhcc
Confidence 3 2223 44555444444444 5555555555555544322 1111 33344444433 334433333344332
Q ss_pred -CCCEEECcCCcCcccccchhhhcCCCCcEEEccC-ccccccCCccccCCCCccEEECcCCccc
Q 048443 153 -SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG-KNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 153 -~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
.++.|++++|+|+. ++.......+ |+++++++ |.++.+.++.|..+++|++|++++|+++
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhhhhhccccccccC-CChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 34445555555542 2222222222 44444442 3333333334444455555555555544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=189.09 Aligned_cols=240 Identities=18% Similarity=0.116 Sum_probs=130.2
Q ss_pred CeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCC-ccccCCC
Q 048443 75 ERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIP-SWICNLS 152 (486)
Q Consensus 75 ~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~ 152 (486)
++++.+ +++++ .+|..+ .+++++|+|++|+|+.+|. ..|. +++|++|+|++|++.+.+| .+|.+++
T Consensus 12 ~~v~C~-~~~Lt-~iP~~l----~~~l~~L~Ls~N~i~~i~~------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQ-ESKVT-EIPSDL----PRNAIELRFVLTKLRVIQK------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp TEEEEE-STTCC-SCCTTC----CTTCSEEEEESCCCSEECT------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CEEEec-CCCCC-ccCcCc----CCCCCEEEccCCcCCCcCH------HHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 445555 55555 345444 3456666666666665421 2333 5666666666666544333 3556666
Q ss_pred CCCE-EECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcC-CccccccCccCcCCC-CCCE
Q 048443 153 SLYV-LDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH-NLLQGKIPKSLANCA-VLEI 229 (486)
Q Consensus 153 ~L~~-L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~ 229 (486)
++++ +.+++|+++...|..|..+++ |++|++++|++....+..+....++..|++.+ +.+....+.+|..+. .+++
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPN-LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTT-CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhcccCCcccccCchhhhhccc-cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 6553 444556666555555666665 66666666666655555555555566666644 345544444455543 4566
Q ss_pred EEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCc
Q 048443 230 SDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQND 309 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (486)
|++++|.++...+..| ...+|+.++++++. ..+.+|..+|..
T Consensus 159 L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n--~l~~i~~~~f~~----------------------------------- 200 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAF-NGTQLDELNLSDNN--NLEELPNDVFHG----------------------------------- 200 (350)
T ss_dssp EECCSSCCCEECTTSS-TTEEEEEEECTTCT--TCCCCCTTTTTT-----------------------------------
T ss_pred hccccccccCCChhhc-cccchhHHhhccCC--cccCCCHHHhcc-----------------------------------
Confidence 6666666654333333 33455555555321 444444443322
Q ss_pred ceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCc-ccCccCchhccCCCCCCEEeCCCCC
Q 048443 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN-NLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+++|+.||+++|+|+...+..+ .+|+.|.+.++ .++ .+| .+..+++|+.++++++.
T Consensus 201 -----------------l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 201 -----------------ASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -----------------EECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred -----------------CcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC-cCC-CchhCcChhhCcCCCCc
Confidence 3457777777777773333333 44445444433 333 555 36677777777777554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=182.05 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=159.6
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|. +++.+.. +| .+..+++|++|++++|++.+..+ +..+++|++|+++ +|.+++. ..+.. +++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~-~n~l~~~--~~~~~--l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS-GNPLKNV--SAIAG--LQSIKT 111 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC-SCCCSCC--GGGTT--CTTCCE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEcc-CCcCCCc--hhhcC--CCCCCE
Confidence 4455555 5666654 55 68999999999999999877655 9999999999999 9999864 46777 999999
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEE
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L 182 (486)
|++++|.++.++. +. +++|++|++++|++++. +. +..+++|+.|++++|++++..+ +..++. |+.|
T Consensus 112 L~l~~n~l~~~~~--------l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L 178 (308)
T 1h6u_A 112 LDLTSTQITDVTP--------LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSK-LTTL 178 (308)
T ss_dssp EECTTSCCCCCGG--------GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CCEE
T ss_pred EECCCCCCCCchh--------hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCC-CCEE
Confidence 9999999988532 33 79999999999999954 33 8899999999999999985433 788887 9999
Q ss_pred EccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 183 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|++|++++|++++
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 999999987654 788999999999999999654 38899999999999999975
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-23 Score=218.59 Aligned_cols=343 Identities=14% Similarity=0.067 Sum_probs=178.2
Q ss_pred CCCCCCEeeCcCCCCCCCCccccc-CCCCCCeeccCCCC-ccccc-CCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIG-SLSSLERLDTFPPM-KIHGN-IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~L~~~n-~i~~~-~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
.+++|++|+|++|.+.+..+..+. .+++|++|+++ +| .++.. ++..... +++|++|++++|.++.... ..++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~-~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~i~~~~~--~~l~ 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS-SCEGFSTDGLAAIAAT--CRNLKELDLRESDVDDVSG--HWLS 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE-SCEEEEHHHHHHHHHH--CTTCCEEECTTCEEECCCG--GGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC-CcCCCCHHHHHHHHHh--CCCCCEEeCcCCccCCcch--HHHH
Confidence 455666666666665555444443 46666666666 44 34332 2233334 6666666666665543210 0001
Q ss_pred cccc-cCccCeeecccCc--ccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc----------
Q 048443 123 WTTL-STKIRHYLISKNN--LTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN---------- 188 (486)
Q Consensus 123 ~~~~-~~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~---------- 188 (486)
.... +++|++|++++|. ++. .++..+..+++|++|++++|.-.+.++..+..++. |+.|+++.+.
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ-LEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTT-CSEEECSBCCCCCCHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCc-ceEcccccccCccchhhHHH
Confidence 1111 4566666666664 111 01111233466666666665221124444455554 5555543331
Q ss_pred ----------------cc----ccCCccccCCCCccEEECcCCccccccC-ccCcCCCCCCEEEccCCccccC-CCcccc
Q 048443 189 ----------------FF----GTTPDTFMNGSDLRMVDLSHNLLQGKIP-KSLANCAVLEISDLRNNQINDT-FPIWLG 246 (486)
Q Consensus 189 ----------------i~----~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~ 246 (486)
+. +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. .+....
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 11 1122223356788888888887664322 23457788888888877 3322 222233
Q ss_pred CCCCCCEEEcCccC-------CCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEee--c-
Q 048443 247 SLLELNILVLIQQL-------PCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMS--N- 316 (486)
Q Consensus 247 ~l~~L~~L~l~~n~-------~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~- 316 (486)
.+++|+.|++.... ..............+++|+.+.+..+.......... ....+.+..++++ +
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l------~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI------ARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH------HHHCTTCCEEEEEESST
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH------HhhCCCcceeEeecccC
Confidence 57788888773310 001111111222346677766554432211100000 0011345566666 2
Q ss_pred ---CCCccc--------cCcccCcccEEEcccccccccCccchhc-cCCCCeeeCCCcccCccCchhc-cCCCCCCEEeC
Q 048443 317 ---EGQMMT--------HDKIPDILKGIILSSNRFDGEMPTSIAN-LKGLQVLGLASNNLQGHIPSCL-GSLTNLESLDL 383 (486)
Q Consensus 317 ---~~~~~~--------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L 383 (486)
+.+... ....+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|++
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 222210 012256788888876 666555555554 7788888888888876555444 56788888888
Q ss_pred CCCC------------CCCCCEEeccCCccc
Q 048443 384 SKNR------------LTFLEFFNATHNNLT 402 (486)
Q Consensus 384 s~N~------------l~~L~~L~ls~N~l~ 402 (486)
++|+ +++|++|++++|+++
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8887 457888888888774
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=167.47 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=99.7
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
+.++.+++.++++|. .+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++. |++
T Consensus 10 ~~v~c~~~~l~~~p~-------~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 80 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-------GI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTY 80 (208)
T ss_dssp TEEECCSSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CCE
T ss_pred CEEEecCCCccCCCC-------CC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCC-cCE
Confidence 355666666665432 11 356777777777777555555677777777777777777554445566665 777
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 777777777666666677777777777777777655556677777777777777777655555666666666666655
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-21 Score=170.61 Aligned_cols=168 Identities=20% Similarity=0.189 Sum_probs=142.0
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+|..+ .++|++|++++|++.+..+..|..+++|++|+++ +|++++..+..+.. +++|++|++++|.++.++
T Consensus 22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~---- 92 (208)
T 2o6s_A 22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNK--LTSLTYLNLSTNQLQSLP---- 92 (208)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCC----
T ss_pred CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCC--CCCcCEEECCCCcCCccC----
Confidence 45444 3589999999999988877788999999999999 99999777777788 999999999999998863
Q ss_pred CCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 120 VLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 120 l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
+..+. +++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++. |+.|++++|.+.+
T Consensus 93 --~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~~------- 162 (208)
T 2o6s_A 93 --NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDC------- 162 (208)
T ss_dssp --TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSCCBCC-------
T ss_pred --HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC-ccEEEecCCCeec-------
Confidence 33444 899999999999999777777899999999999999999766666888887 9999999997753
Q ss_pred CCCCccEEECcCCccccccCccCcCCCC
Q 048443 199 NGSDLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
.+++|+.|+++.|.++|.+|.+++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4568999999999999999998887765
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=191.15 Aligned_cols=182 Identities=21% Similarity=0.294 Sum_probs=102.3
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccC
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST 128 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~ 128 (486)
+++.|++++|++.+ +|..+. ++|++|+++ +|.++ .+| .. +++|++|++++|.|+.+|. + ..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls-~N~l~-~ip---~~--l~~L~~L~Ls~N~l~~ip~--------l-~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEIT-QNALI-SLP---EL--PASLEYLDACDNRLSTLPE--------L-PA 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECC-SSCCS-CCC---CC--CTTCCEEECCSSCCSCCCC--------C-CT
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECc-CCCCc-ccc---cc--cCCCCEEEccCCCCCCcch--------h-hc
Confidence 56666666666554 444332 566666666 66666 344 22 5666666666666665432 1 12
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|++++|++++ +|. .+++|+.|++++|.+++ +|. .++. |++|++++|.+++ +|. |. ++|+.|+|
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~-L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTS-LEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTT-CCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCC-cCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 66666666666664 444 45666666666666663 443 2333 6666666666655 343 43 56666666
Q ss_pred cCCccccccCccCcCCCCC-------CEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCCh
Q 048443 209 SHNLLQGKIPKSLANCAVL-------EISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPS 269 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~ 269 (486)
++|.++ .+|. +.. +| ++|++++|.|+ .+|..+..+++|+.|++++|. +.+.+|.
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~--l~~~~p~ 248 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP--LSSRIRE 248 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS--CCHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc--CCCcCHH
Confidence 666666 4444 433 45 66666666665 345555556666666666653 3444443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-22 Score=211.53 Aligned_cols=369 Identities=13% Similarity=0.078 Sum_probs=220.8
Q ss_pred CCCCCCCCCEeeCcCCCCCCC---Cc------------ccccCCCCCCeeccCCCCcccccCCchhc-cccCCCCcEEEc
Q 048443 43 SLGNLNQLQWLDLAFNNFLRE---LP------------ASIGSLSSLERLDTFPPMKIHGNIPKWLL-NPSMKNFSYLNL 106 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~---~~------------~~~~~l~~L~~L~L~~~n~i~~~~p~~~~-~~~l~~L~~L~L 106 (486)
.+..+++|+.|+++++..... .| ..+..+++|++|+++ ++.+++..+..+. . +++|++|++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~-~~~~~~~~~~~l~~~--~~~L~~L~L 137 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK-RMVVTDDCLELIAKS--FKNFKVLVL 137 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE-SCBCCHHHHHHHHHH--CTTCCEEEE
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEee-CcEEcHHHHHHHHHh--CCCCcEEeC
Confidence 356678999999999864321 12 223468899999999 8888887777776 5 899999999
Q ss_pred cCC-CCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcccc----CCCCCCEEECcCCc--Ccccc-cchhhhcCC
Q 048443 107 SKN-YFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWIC----NLSSLYVLDLSDNN--LSGEL-LQCLGNFSG 177 (486)
Q Consensus 107 s~N-~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~--i~~~~-~~~l~~~~~ 177 (486)
++| .++... ++.... +++|++|++++|.+++..+..+. .+++|++|++++|. ++... +..+..+++
T Consensus 138 ~~~~~~~~~~-----l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 138 SSCEGFSTDG-----LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp ESCEEEEHHH-----HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred CCcCCCCHHH-----HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 999 443210 112222 79999999999998865444443 67799999999997 33211 112234466
Q ss_pred CCcEEEccCccccccCCccccCCCCccEEECcCCc-------ccc-----------------------ccCccCcCCCCC
Q 048443 178 GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL-------LQG-----------------------KIPKSLANCAVL 227 (486)
Q Consensus 178 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-------l~~-----------------------~~p~~~~~l~~L 227 (486)
|+.|++++|...+.++..+..+++|++|+++.+. +.+ .++..+..+++|
T Consensus 213 -L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L 291 (594)
T 2p1m_B 213 -LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRL 291 (594)
T ss_dssp -CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTC
T ss_pred -CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCC
Confidence 9999999984333366667778888888865542 111 122222345677
Q ss_pred CEEEccCCccccCCC-ccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccc---cc
Q 048443 228 EISDLRNNQINDTFP-IWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDF---YR 303 (486)
Q Consensus 228 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~---~~ 303 (486)
++|++++|.+++... ..+..+++|+.|+++++ ............+++|+.+++..+..........+.... ..
T Consensus 292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~---~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY---IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG---GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc---cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 777777777553322 22456777777777664 111111222334666776666321000000000000000 00
Q ss_pred cCCCCcceEEeecCCCccccC----cccCcccEEEcc--c----ccccc-----cCccchhccCCCCeeeCCCcccCccC
Q 048443 304 YFPQNDYSITMSNEGQMMTHD----KIPDILKGIILS--S----NRFDG-----EMPTSIANLKGLQVLGLASNNLQGHI 368 (486)
Q Consensus 304 ~~~~~~~~l~~~~~~~~~~~~----~~~~~L~~L~Ls--~----N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~ 368 (486)
.--+.++.+.+..+.+..... ..+++|+.|+++ + +.+++ .++..+..+++|++|++++ .+++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 001345666665555543221 125778888888 3 45552 1222356678888888877 666555
Q ss_pred chhccC-CCCCCEEeCCCCC------------CCCCCEEeccCCccccCCCC--CCCCCCCCCccccCCcC
Q 048443 369 PSCLGS-LTNLESLDLSKNR------------LTFLEFFNATHNNLTGPIPQ--ANQFPTFGYSSFNGNSR 424 (486)
Q Consensus 369 ~~~~~~-l~~L~~L~Ls~N~------------l~~L~~L~ls~N~l~~~~p~--~~~~~~~~~~~~~~np~ 424 (486)
+..+.. +++|++|++++|. +++|++|++++|++++..+. ...+..++.+.+.+|+.
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 555554 7888888888887 47888888888887532221 12245566666666543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=174.98 Aligned_cols=183 Identities=20% Similarity=0.279 Sum_probs=149.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+.+.+..+ +..+++|+.|++++|.+... +.+..+++|++|+++ +|++++..+ +.. +++|++|++++|.+
T Consensus 32 ~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~-~n~l~~~~~--l~~--l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 32 KKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN-GNKLTDIKP--LAN--LKNLGWLFLDENKV 102 (291)
T ss_dssp TCSCTTSEEC--HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCC
T ss_pred cCCCcccccc--hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEcc-CCccCCCcc--ccc--CCCCCEEECCCCcC
Confidence 3444444333 56788999999999997655 348889999999999 999987655 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.++. +. +++|++|++++|++++ + ..+..+++|+.|++++|++++. ..+..++. |+.|++++|.+.
T Consensus 103 ~~~~~--------l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~L~~N~l~ 169 (291)
T 1h6t_A 103 KDLSS--------LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQIS 169 (291)
T ss_dssp CCGGG--------GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCC
T ss_pred CCChh--------hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCC-CCEEEccCCccc
Confidence 87532 33 7899999999999985 3 5688899999999999999854 57888887 999999999998
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
+..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++...
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 7655 8889999999999999985 44 488899999999999998753
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=179.57 Aligned_cols=116 Identities=23% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCccccc-CCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIG-SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
+|..+. +.++.|+|++|++.+..+..|. .+++|++|+|+ +|+|++..+..|.. +++|++|+|++|+++.++
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~--l~~L~~L~Ls~N~l~~~~--- 104 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVP--VPNLRYLDLSSNHLHTLD--- 104 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTT--CTTCCEEECCSSCCCEEC---
T ss_pred cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccC--CCCCCEEECCCCcCCcCC---
Confidence 454444 3577788888777777666676 77777777777 77777766677776 777777777777776542
Q ss_pred CCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG 166 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 166 (486)
+..+. +++|++|+|++|++++..+..|.++++|+.|+|++|++++
T Consensus 105 ---~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 105 ---EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred ---HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 22333 5666666666666665555666666666666666666653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=183.10 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=40.6
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 377 (486)
+.|+.|+|++|.|+ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 34699999999998 68888888999999999999999888888776543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=159.96 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=56.6
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..++. |++|++++|++++..|..|..+++|++|
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS-CCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC-CCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 344444444444444333444555555555555555555444444444444 5555555555555555555555555555
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+|++|.+++..|..|..+++|++|++++|++.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555444555555555555555555554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=159.76 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=96.1
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+|..+. ++++.|++++|++.++.+..|..+++|++|+|+ +|.+++..|..|.. +++|++|+|++|.++.+|.
T Consensus 26 iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~l~~--- 97 (220)
T 2v9t_B 26 IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQG--LRSLNSLVLYGNKITELPK--- 97 (220)
T ss_dssp CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTT--CSSCCEEECCSSCCCCCCT---
T ss_pred CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhC--CcCCCEEECCCCcCCccCH---
Confidence 555554 688999999999888877888889999999998 88888888888888 8888888888888877532
Q ss_pred CCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccc
Q 048443 120 VLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNF 189 (486)
Q Consensus 120 l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i 189 (486)
..+. +++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..++. |+.|++++|.+
T Consensus 98 ---~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~~ 164 (220)
T 2v9t_B 98 ---SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA-IQTMHLAQNPF 164 (220)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCE
T ss_pred ---hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC-CCEEEeCCCCc
Confidence 2233 566666666666666555666666666666666666666444444444443 44444444444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=185.22 Aligned_cols=186 Identities=19% Similarity=0.257 Sum_probs=155.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+.+...++ +..+++|+.|++++|.+... + .+..+++|+.|+|+ +|.+.+..| +.. +++|+.|+|++|.+
T Consensus 29 ~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls-~N~l~~~~~--l~~--l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 29 KKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLN-GNKLTDIKP--LTN--LKNLGWLFLDENKI 99 (605)
T ss_dssp TCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECT-TSCCCCCGG--GGG--CTTCCEEECCSSCC
T ss_pred cCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEee-CCCCCCChh--hcc--CCCCCEEECcCCCC
Confidence 4455555444 56789999999999997654 3 68899999999999 999997665 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.+|. +. +++|++|+|++|++++ + ..+..+++|+.|+|++|.+++. ..+..++. |+.|+|++|.+.
T Consensus 100 ~~l~~--------l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 100 KDLSS--------LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQIS 166 (605)
T ss_dssp CCCTT--------STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT-CSEEECCSSCCC
T ss_pred CCChh--------hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCC-CCEEECcCCcCC
Confidence 88543 33 7999999999999985 3 4688999999999999999864 67888887 999999999998
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPI 243 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 243 (486)
+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+....
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 8766 88999999999999999854 3688999999999999999765433
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=157.30 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=97.9
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
+.++++++.++.+|. .+ .+++++|++++|++++..+..|..+++|+.|+|++|++++..|..|..++. |++
T Consensus 14 ~~v~c~~~~l~~iP~-------~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-------NL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNS 84 (220)
T ss_dssp TEEECTTSCCSSCCS-------SC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS-CCE
T ss_pred CEEEcCCCCcCcCCC-------cc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC-CCE
Confidence 455666666665432 11 245666667776666555556666677777777777776655666666665 777
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
|++++|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 777777776655555666777777777777776666666667777777777777776666666666777777777665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=157.31 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=134.8
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC-ccccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP-SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
+.+++++|.++++|. .+ ...+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..++. |+
T Consensus 14 ~~l~~s~n~l~~iP~-------~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-------HI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VN 84 (220)
T ss_dssp TEEECCSSCCSSCCS-------CC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT-CC
T ss_pred CEeEeCCCCcccCcc-------CC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC-CC
Confidence 578999999888653 22 3567899999999997644 46899999999999999999877778999997 99
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999999988889999999999999999998889999999999999999999999889999999999999999984
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=181.24 Aligned_cols=167 Identities=18% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S 127 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~ 127 (486)
.+..+.++.+.+.... .+..+++|+.|+++ +|.+... + .+.. +++|+.|+|++|.++.++ . +. +
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~-~n~i~~l-~-~l~~--l~~L~~L~Ls~N~l~~~~-------~-l~~l 86 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIAN-NSDIKSV-Q-GIQY--LPNVTKLFLNGNKLTDIK-------P-LTNL 86 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCT-TCCCCCC-T-TGGG--CTTCCEEECTTSCCCCCG-------G-GGGC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECc-CCCCCCC-h-HHcc--CCCCCEEEeeCCCCCCCh-------h-hccC
Confidence 3444555555544433 24556667777776 6666543 2 3555 666777777666666542 1 22 5
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++|++|+|++|.+++ ++ .+..+++|+.|+|++|++++ + ..+..++. |+.|+|++|.+.+. ..+..+++|+.|+
T Consensus 87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTT-CSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCc-cCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 666666666666653 22 45666666666666666653 2 33555554 66666666655543 3455555555555
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
|++|.+++..| +..+++|+.|+|++|++.+
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 55555554333 5555555555555555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=166.55 Aligned_cols=172 Identities=23% Similarity=0.200 Sum_probs=102.3
Q ss_pred CeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc--ccCccCeeecccCcccccCCccccCCC
Q 048443 75 ERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT--LSTKIRHYLISKNNLTGEIPSWICNLS 152 (486)
Q Consensus 75 ~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 152 (486)
++++++ +++++. +|..+ .+.++.|+|++|.|+.++. ..+ .+++|++|+|++|++++..+..|.+++
T Consensus 21 ~~l~c~-~~~l~~-iP~~~----~~~l~~L~Ls~N~l~~l~~------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCS-KQQLPN-VPQSL----PSYTALLDLSHNNLSRLRA------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TEEECC-SSCCSS-CCSSC----CTTCSEEECCSSCCCEECT------TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEEEeC-CCCcCc-cCccC----CCCCCEEECCCCCCCccCh------hhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 466666 666653 45444 3456667777776665532 222 256666666666666655555666666
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccC---cCCCCCCE
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSL---ANCAVLEI 229 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~ 229 (486)
+|++|+|++|++++..+..|..++. |++|++++|++.+..+..|..+++|++|+|++|.+++..+..| ..+++|++
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQA-LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcC-CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 6666666666666554555666665 6666666666666666666666666666666666664333333 34666666
Q ss_pred EEccCCccccCCCccccCCCCC--CEEEcCcc
Q 048443 230 SDLRNNQINDTFPIWLGSLLEL--NILVLIQQ 259 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L--~~L~l~~n 259 (486)
|+|++|.+++..+..+..++.+ +.|++++|
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666666665444555555542 55666554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=163.61 Aligned_cols=186 Identities=19% Similarity=0.220 Sum_probs=154.9
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.++..+.+..+.+.+.. .+..+++|++|+++ +|.+... + .+.. +++|++|++++|.++.++ . +.
T Consensus 24 ~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~-~~~i~~~-~-~~~~--l~~L~~L~L~~n~l~~~~-------~-l~~ 88 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAV--TQNELNSIDQIIAN-NSDIKSV-Q-GIQY--LPNVTKLFLNGNKLTDIK-------P-LAN 88 (291)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHHTCCEEECT-TSCCCCC-T-TGGG--CTTCCEEECCSSCCCCCG-------G-GTT
T ss_pred HHHHHHHhcCCCccccc--chhhcCcccEEEcc-CCCcccC-h-hHhc--CCCCCEEEccCCccCCCc-------c-ccc
Confidence 34445566666655442 35678999999999 9999865 3 4777 999999999999999863 2 44
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|.+++ ++ .+..+++|++|++++|++++. ..+..++. |+.|++++|.+++. ..+..+++|++|
T Consensus 89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCC-CCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 8999999999999985 33 489999999999999999853 56888887 99999999999876 578899999999
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEE
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCC
Confidence 999999996544 88999999999999999864 3 4889999999999987
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=153.21 Aligned_cols=151 Identities=20% Similarity=0.107 Sum_probs=77.6
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
.+.++.+++++. .+|..+. ++|++|+++ +|.+++..|..+.. +++|++|+|++|.++.+| +..+. ++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls-~n~i~~~~~~~~~~--l~~L~~L~L~~N~l~~i~------~~~~~~l~ 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLH-DNQITKLEPGVFDS--LINLKELYLGSNQLGALP------VGVFDSLT 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECC-SSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCC------TTTTTTCT
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcC-CCccCccCHHHhhC--ccCCcEEECCCCCCCCcC------hhhcccCC
Confidence 345666655533 3333332 556666666 66666655655655 666666666666655542 12222 45
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|+|++|++++..+..|..+++|++|++++|+++ .+|..+..++. |++|++++|++.+..+..|..+++|+.|++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH-LTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC-CCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 5555555555555444444555555666666555555 44444444443 444544444444443344444444444444
Q ss_pred cCCccc
Q 048443 209 SHNLLQ 214 (486)
Q Consensus 209 ~~N~l~ 214 (486)
++|.+.
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-21 Score=196.04 Aligned_cols=201 Identities=18% Similarity=0.172 Sum_probs=141.3
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc-------------ccccCCchhccccCCCCcEEE-ccCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK-------------IHGNIPKWLLNPSMKNFSYLN-LSKN 109 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~-------------i~~~~p~~~~~~~l~~L~~L~-Ls~N 109 (486)
+..+++|+.|+|++|++. .+|..++.+++|+.|+++ +|. ..+..|..+.. +++|+.|+ ++.|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~-~n~~l~~l~~ll~~~~~~~~~~~~l~~--l~~L~~L~~l~~n 420 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQY--FSTLKAVDPMRAA 420 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGGGHHHHHHH--HHHHHHHCGGGHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccc-cchhhhhHHHHHHhcccccCCHHHHHH--HHhcccCcchhhc
Confidence 367889999999999964 679999999999999997 665 45667778888 88888888 6666
Q ss_pred CCCCCCCC--C-CCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccC
Q 048443 110 YFPRFDQH--P-TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG 186 (486)
Q Consensus 110 ~l~~~~~l--~-~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~ 186 (486)
.+..++.+ . +-+ ..+....|++|++++|.+++ +|. |..+++|+.|+|++|.++ .+|..++.++. |+.|++++
T Consensus 421 ~~~~L~~l~l~~n~i-~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~Ls~ 495 (567)
T 1dce_A 421 YLDDLRSKFLLENSV-LKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC-LEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT-CCEEECCS
T ss_pred ccchhhhhhhhcccc-cccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC-CCEEECCC
Confidence 44322100 0 000 00002357778888887774 555 777778888888888777 66777777776 88888888
Q ss_pred ccccccCCccccCCCCccEEECcCCcccccc-CccCcCCCCCCEEEccCCccccCCCcc---ccCCCCCCEEE
Q 048443 187 KNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI-PKSLANCAVLEISDLRNNQINDTFPIW---LGSLLELNILV 255 (486)
Q Consensus 187 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~ 255 (486)
|.+++ +| .+..+++|++|+|++|.+++.. |..++.+++|++|++++|++++.+|.. +..+++|+.|+
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 87776 45 6777777888888888777655 777777788888888888777654432 23366666665
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-18 Score=152.83 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=110.3
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 100 NFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 100 ~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
+-+.++.+++.++.+|. .+ .++|++|++++|++++..|..|..+++|++|+|++|+++...+..|..++. |
T Consensus 20 s~~~v~c~~~~l~~ip~-------~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-L 90 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-------GI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-L 90 (229)
T ss_dssp ETTEEECTTSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-C
T ss_pred eCCEeEccCCCcCccCC-------CC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-c
Confidence 34567777777776543 11 367777788888777766777777788888888888877554455666776 8
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
++|++++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 88888888887776667777788888888888877 66777777888888888888887666667777788888887776
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=161.97 Aligned_cols=166 Identities=18% Similarity=0.272 Sum_probs=124.2
Q ss_pred hhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEE
Q 048443 27 LDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLN 105 (486)
Q Consensus 27 l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~ 105 (486)
+..+. +.+.+.+.. .+..+++|++|++++|++... + .+..+++|++|+++ +|++++..+ +.. +++|++|+
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~-~N~i~~~~~--l~~--l~~L~~L~ 91 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLS-HNQISDLSP--LKD--LTKLEELS 91 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTT--CSSCCEEE
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECC-CCccCCChh--hcc--CCCCCEEE
Confidence 34443 556665433 577888899999998887653 3 67888889999998 888886555 767 88899999
Q ss_pred ccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEcc
Q 048443 106 LSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 106 Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~ 185 (486)
+++|+++.+|. ++ . ++|++|++++|++++ + +.+..+++|+.|++++|++++. + .+..++. |+.|+++
T Consensus 92 L~~N~l~~l~~----~~---~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~-L~~L~L~ 158 (263)
T 1xeu_A 92 VNRNRLKNLNG----IP---S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSK-LEVLDLH 158 (263)
T ss_dssp CCSSCCSCCTT----CC---C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTT-CCEEECT
T ss_pred CCCCccCCcCc----cc---c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCC-CCEEECC
Confidence 99888887654 11 1 788888888888884 3 3578888888888888888753 3 5777776 8888888
Q ss_pred CccccccCCccccCCCCccEEECcCCccccc
Q 048443 186 GKNFFGTTPDTFMNGSDLRMVDLSHNLLQGK 216 (486)
Q Consensus 186 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 216 (486)
+|++++. ..+..+++|+.|++++|.++..
T Consensus 159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888766 5677788888888888887743
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=152.97 Aligned_cols=151 Identities=11% Similarity=0.181 Sum_probs=87.0
Q ss_pred CCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccc
Q 048443 70 SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWI 148 (486)
Q Consensus 70 ~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~ 148 (486)
.+++|++|+++ +|.++ .+| .+.. +++|++|++++|.++.++ .+. +++|++|++++|++++..+..+
T Consensus 42 ~l~~L~~L~l~-~n~i~-~l~-~l~~--l~~L~~L~l~~n~~~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLA-NINVT-DLT-GIEY--AHNIKDLTINNIHATNYN--------PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEE-SSCCS-CCT-TGGG--CTTCSEEEEESCCCSCCG--------GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEecc-CCCcc-ChH-HHhc--CCCCCEEEccCCCCCcch--------hhhcCCCCCEEEeECCccCcccChhh
Confidence 33444444444 44444 222 3444 555555555555444321 122 5566666666666665556666
Q ss_pred cCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc-ccccCCccccCCCCccEEECcCCccccccCccCcCCCCC
Q 048443 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN-FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVL 227 (486)
Q Consensus 149 ~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 227 (486)
..+++|++|++++|++++..+..+..++. |++|++++|. +.. ++ .+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~-L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L 183 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL 183 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSS-CCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCC-CCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence 66777777777777776556666666665 7777777776 433 33 46666777777777777764 33 56667777
Q ss_pred CEEEccCCccc
Q 048443 228 EISDLRNNQIN 238 (486)
Q Consensus 228 ~~L~L~~N~l~ 238 (486)
++|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 77777777664
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=159.61 Aligned_cols=170 Identities=19% Similarity=0.199 Sum_probs=127.9
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+.+++.+++++|.+.+.. .+..+++|++|+++ +|.++. ++ .+.. +++|++|++++|+++.++ . +
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~-~n~i~~-l~-~l~~--l~~L~~L~L~~N~i~~~~-------~-l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGD-NSNIQS-LA-GMQF--FTNLKELHLSHNQISDLS-------P-L 81 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECT-TSCCCC-CT-TGGG--CTTCCEEECCSSCCCCCG-------G-G
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECc-CCCccc-ch-HHhh--CCCCCEEECCCCccCCCh-------h-h
Confidence 4566777888888876543 57788888888888 888875 34 5667 888888888888888753 2 3
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCcc
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 204 (486)
. +++|++|++++|++++ +|.. .. ++|++|++++|++++. ..+..++. |+.|++++|++++. + .+..+++|+
T Consensus 82 ~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~-L~~L~Ls~N~i~~~-~-~l~~l~~L~ 153 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKN-LEILSIRNNKLKSI-V-MLGFLSKLE 153 (263)
T ss_dssp TTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTT-CCEEECTTSCCCBC-G-GGGGCTTCC
T ss_pred ccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCccc-ccEEECCCCcCCCC-h-HHccCCCCC
Confidence 3 7888888888888884 4432 22 7888888888888753 35777776 88888888888765 2 577788888
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
+|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888888888755 5677888888888888887654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-18 Score=183.56 Aligned_cols=181 Identities=21% Similarity=0.198 Sum_probs=95.6
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
..|..|..++.|+.|+|++|.+. .+|..+..+++|++|+|+ +|.++ .+|..+.. +++|++|+|++|.|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls-~N~l~-~lp~~~~~--l~~L~~L~Ls~N~l~~----- 284 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLN-GNSLT-ELPAEIKN--LSNLRVLDLSHNRLTS----- 284 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCT-TSCCS-CCCGGGGG--GTTCCEEECTTSCCSS-----
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEee-CCcCc-ccChhhhC--CCCCCEEeCcCCcCCc-----
Confidence 34566777777777777777765 455555577777777777 77777 66777776 7777777777777775
Q ss_pred CCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTF 197 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~ 197 (486)
+|..+. +++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+......+..+++++|.+++.+|..
T Consensus 285 --lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 285 --LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp --CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred --cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 344555 677777777777776 566667777777777777777777666666554321234667777776665543
Q ss_pred cCCCCccEEECcCC--------ccccccCccCcCCCCCCEEEccCCccc
Q 048443 198 MNGSDLRMVDLSHN--------LLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 198 ~~l~~L~~L~L~~N--------~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|+.|++++| .+.+..+..+..+..+....+++|.+.
T Consensus 361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------------------------------CCC
T ss_pred -----cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 444555555 222222333344444555555555543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=147.56 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=126.0
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
+++|++|++++|.++.+| .+. +++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..++
T Consensus 43 l~~L~~L~l~~n~i~~l~--------~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--------GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--------TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred cCCccEEeccCCCccChH--------HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 889999999999998753 233 789999999999776 335788899999999999999977888888888
Q ss_pred CCCcEEEccCccccccCCccccCCCCccEEECcCCc-cccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEE
Q 048443 177 GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL-LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILV 255 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 255 (486)
. |++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+.+.. .+..+++|+.|+
T Consensus 113 ~-L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 S-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp T-CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred C-CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 7 9999999999988788889999999999999998 66 455 6888999999999999998633 678889999999
Q ss_pred cCcc
Q 048443 256 LIQQ 259 (486)
Q Consensus 256 l~~n 259 (486)
+++|
T Consensus 188 l~~N 191 (197)
T 4ezg_A 188 AFSQ 191 (197)
T ss_dssp ECBC
T ss_pred eeCc
Confidence 9887
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=146.28 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=111.1
Q ss_pred CCcccccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcc-cccCCCCCCeecc
Q 048443 1 EKRCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPA-SIGSLSSLERLDT 79 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L 79 (486)
|..|.|.. +.+++ ++|.+ +.+|..+.. ++++|++++|++.+..+. .|..+++|++|++
T Consensus 3 P~~C~C~~-~~l~~-----------------s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L 61 (192)
T 1w8a_A 3 PAMCHCEG-TTVDC-----------------TGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61 (192)
T ss_dssp CTTSEEET-TEEEC-----------------TTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEEC
T ss_pred CCCCEECC-CEEEc-----------------CCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEEC
Confidence 67888875 44554 34444 456665553 899999999998877765 4889999999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEE
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 158 (486)
+ +|.+++..|..|.. +++|++|+|++|+++.+ .+..+. +++|++|++++|++++..|..|..+++|++|+
T Consensus 62 s-~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 62 K-RNQLTGIEPNAFEG--ASHIQELQLGENKIKEI------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp C-SSCCCCBCTTTTTT--CTTCCEEECCSCCCCEE------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred C-CCCCCCcCHhHcCC--cccCCEEECCCCcCCcc------CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 9 99999888999988 99999999999999876 334454 78899999999999888888888889999999
Q ss_pred CcCCcCccccc
Q 048443 159 LSDNNLSGELL 169 (486)
Q Consensus 159 Ls~N~i~~~~~ 169 (486)
+++|.+.+..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 99998876543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-18 Score=181.39 Aligned_cols=181 Identities=24% Similarity=0.190 Sum_probs=103.3
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCe-----eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLER-----LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~-----L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
+.++.|+|++|.+... +..+.....|+. +++. .|.+. ..++.+.. +++|+.|+|++|.+..+ |
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~-~n~~~-~~~~~~~~--l~~L~~L~Ls~n~l~~l-------~ 240 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDI-ENRMV-MPKDSKYD--DQLWHALDLSNLQIFNI-------S 240 (727)
T ss_dssp ----------------------------------------------------C--CCCCCEEECTTSCCSCC-------C
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccc-cccee-cChhhhcc--CCCCcEEECCCCCCCCC-------C
Confidence 5678888888876543 333322222222 2233 33333 44666777 88888888888888764 3
Q ss_pred cccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC
Q 048443 123 WTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS 201 (486)
Q Consensus 123 ~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 201 (486)
..+. +++|++|+|++|.++ .+|..|..+++|++|+|++|.|+ .+|..++.+.. |++|+|++|.+. .+|..|..++
T Consensus 241 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~-~lp~~~~~l~ 316 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ-LKYFYFFDNMVT-TLPWEFGNLC 316 (727)
T ss_dssp GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT-CSEEECCSSCCC-CCCSSTTSCT
T ss_pred hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC-CCEEECCCCCCC-ccChhhhcCC
Confidence 3333 788888888888888 77888888888888888888888 67888888876 888888888886 5566688888
Q ss_pred CccEEECcCCccccccCccCcCCCC-CCEEEccCCccccCCCcc
Q 048443 202 DLRMVDLSHNLLQGKIPKSLANCAV-LEISDLRNNQINDTFPIW 244 (486)
Q Consensus 202 ~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~ 244 (486)
+|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|..
T Consensus 317 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 8888888888888777766654322 223677788877766653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=140.26 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=100.6
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCc-cccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPS-WICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
+++++++|.++++|. .+ ..++++|++++|++++..+. .|..+++|++|++++|++++..|..|..++. |+
T Consensus 11 ~~l~~s~~~l~~ip~-------~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-------DI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-IQ 81 (192)
T ss_dssp TEEECTTSCCSSCCS-------CC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-CC
T ss_pred CEEEcCCCCcCcCcc-------CC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc-CC
Confidence 577788887777543 11 24778888888888755543 4778888888888888888777777888776 88
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
+|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|++.+.
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888888888888777788888888888888888877788888888888888888887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-19 Score=182.70 Aligned_cols=195 Identities=18% Similarity=0.137 Sum_probs=155.8
Q ss_pred Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCC-------------CCCCCcccccCCCCCCeec-cCCCCccccc
Q 048443 24 SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNN-------------FLRELPASIGSLSSLERLD-TFPPMKIHGN 88 (486)
Q Consensus 24 ~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-------------~~~~~~~~~~~l~~L~~L~-L~~~n~i~~~ 88 (486)
.+.+++|+ +.|.+. .+|+.++++++|+.|++++|. ..+..|..++.+++|+.|+ ++ .|.+...
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~-~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-hcccchh
Confidence 45566776 556664 789999999999999997774 5677788899999999998 55 5544321
Q ss_pred CCc-----hhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCC
Q 048443 89 IPK-----WLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN 162 (486)
Q Consensus 89 ~p~-----~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 162 (486)
... .+.......|+.|++++|.++++ |. +. +++|++|+|++|+++ .+|..|+.+++|+.|+|++|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-------p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVL-------CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-------CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCC-------cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 110 11110034699999999999985 44 44 899999999999999 88999999999999999999
Q ss_pred cCcccccchhhhcCCCCcEEEccCccccccC-CccccCCCCccEEECcCCccccccCcc---CcCCCCCCEEEc
Q 048443 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTT-PDTFMNGSDLRMVDLSHNLLQGKIPKS---LANCAVLEISDL 232 (486)
Q Consensus 163 ~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L 232 (486)
++++ +| .++.++. |+.|++++|++++.. |..|..+++|+.|++++|.+++..|.. +..+++|++|++
T Consensus 497 ~l~~-lp-~l~~l~~-L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALEN-VD-GVANLPR-LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-CG-GGTTCSS-CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-Cc-ccCCCCC-CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9996 66 8899997 999999999999887 999999999999999999999654432 234889999874
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-16 Score=134.95 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=93.8
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
+++++++|.++.+|. .+ .++|++|++++|+++ .+|..|.++++|++|++++|.+++..+..|..++. |++
T Consensus 13 ~~l~~~~~~l~~ip~-------~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~-L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-------GI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ-LLT 82 (193)
T ss_dssp TEEECTTSCCSSCCS-------CC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT-CCE
T ss_pred CEEEcCCCCCCcCCC-------CC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC-CCE
Confidence 567777777776543 11 356777888888877 66677777888888888888887666666777776 888
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888888877777777777788888888888877555556777778888888877765
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-17 Score=138.10 Aligned_cols=132 Identities=17% Similarity=0.063 Sum_probs=89.5
Q ss_pred CCCCEeeCcCCCCC-CCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFL-RELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
++|++|++++|++. +.+|..+..+++|++|+++ +|.+++. ..+.. +++|++|++++|.++.. +|..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~--l~~L~~L~Ls~N~l~~~------~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISV--SNLPK--LPKLKKLELSENRIFGG------LDMLAE 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCC--SSCCC--CSSCCEEEEESCCCCSC------CCHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCCh--hhhcc--CCCCCEEECcCCcCchH------HHHHHh
Confidence 66777777777765 4666666777777777777 7777655 55666 77777777777777663 344444
Q ss_pred -cCccCeeecccCcccccC-CccccCCCCCCEEECcCCcCccccc---chhhhcCCCCcEEEccCccccc
Q 048443 127 -STKIRHYLISKNNLTGEI-PSWICNLSSLYVLDLSDNNLSGELL---QCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~---~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..++. |++|++++|.+..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~ 161 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ-LTYLDGYDREDQE 161 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS-CCEETTEETTSCB
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc-CcEecCCCCChhh
Confidence 677777777777777432 2567777777777777777774433 35666665 7777777777654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=149.04 Aligned_cols=219 Identities=14% Similarity=0.073 Sum_probs=146.8
Q ss_pred CCCCCEeeCcCCCCC--------------------CCCcccccC--------CCCCCeeccCCCCcccccCCchhccccC
Q 048443 47 LNQLQWLDLAFNNFL--------------------RELPASIGS--------LSSLERLDTFPPMKIHGNIPKWLLNPSM 98 (486)
Q Consensus 47 l~~L~~L~Ls~n~~~--------------------~~~~~~~~~--------l~~L~~L~L~~~n~i~~~~p~~~~~~~l 98 (486)
+++|+.|||++|++. .+.+.+|.+ +++|+.|++. + .++.+.+.+|.+ +
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~-~-~i~~I~~~aF~~--~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS-E-KIKNIEDAAFKG--C 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBC-T-TCCEECTTTTTT--C
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECC-c-cccchhHHHhhc--C
Confidence 677888888888876 233456777 8888888887 6 777777777888 8
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcc----cccCCccccCCCCCC------------------
Q 048443 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNL----TGEIPSWICNLSSLY------------------ 155 (486)
Q Consensus 99 ~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~------------------ 155 (486)
++|+.|++++|.+..++. ..|. +.++.++.+..+.. ......+|.++..|+
T Consensus 124 ~~L~~l~l~~n~i~~i~~------~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLP------EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTCCEEEBCCSSCCEECT------TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred cccceEEcCCCCccccch------hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 888888888888876632 3333 45555555544221 112233344444444
Q ss_pred --------EEECcCCcCcccccchhhh-cCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCC
Q 048443 156 --------VLDLSDNNLSGELLQCLGN-FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 156 --------~L~Ls~N~i~~~~~~~l~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
.+.+.++- .......+.. +++ |+.+++++|+++.+.+.+|.++++|+.+++++| ++...+.+|.++++
T Consensus 198 ~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~-L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKL-DNADFKLIRDYMPN-LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp TCCGGGCSEEEEEECC-CHHHHHHHHHHCTT-CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccCccccceEEEeeee-cHHHHHHHHHhcCC-CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence 22222221 1111112222 344 888888888888877788888888888888887 66666778888888
Q ss_pred CC-EEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccc
Q 048443 227 LE-ISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFAN 282 (486)
Q Consensus 227 L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~ 282 (486)
|+ .+++.+ .++.+.+.+|.++++|+.++++.+ ....++...|.++++|+.+.
T Consensus 275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n---~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD---KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS---CCCEECTTTTCTTCCCCEEE
T ss_pred ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC---ccCccchhhhcCCcchhhhc
Confidence 88 888887 676677778888888888888666 66777777888888887664
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-16 Score=134.06 Aligned_cols=131 Identities=17% Similarity=0.106 Sum_probs=81.9
Q ss_pred CCCCcEEEccCCCCC--CCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhh
Q 048443 98 MKNFSYLNLSKNYFP--RFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGN 174 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~--~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 174 (486)
.++|++|++++|.++ . +|..+. +++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~-------i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK-------IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTB-------CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhh-------HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 455666666666655 3 233333 56666666666666643 55666667777777777766555555555
Q ss_pred cCCCCcEEEccCccccccC-CccccCCCCccEEECcCCccccccC---ccCcCCCCCCEEEccCCccc
Q 048443 175 FSGGLSVLSLQGKNFFGTT-PDTFMNGSDLRMVDLSHNLLQGKIP---KSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 175 ~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 238 (486)
++. |++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 94 l~~-L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 94 LPN-LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CTT-CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCC-CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 665 777777777665542 2556667777777777777774433 35667777777777777765
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-15 Score=144.64 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=100.6
Q ss_pred CcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCC
Q 048443 34 SDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPR 113 (486)
Q Consensus 34 n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~ 113 (486)
++++..-+.+|.+. +|+.+.+..+ +..+...+|.+. +|+.+++. . .+..+.+.+|.+ +++|+.+++++|.++.
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp-~-~l~~I~~~aF~~--c~~L~~l~l~~n~l~~ 194 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFP-S-TLEQLKEDIFYY--CYNLKKADLSKTKITK 194 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECC-T-TCCEECSSTTTT--CTTCCEEECTTSCCSE
T ss_pred CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeC-C-CccEehHHHhhC--cccCCeeecCCCcceE
Confidence 44444444455553 5666666544 455555555553 46666664 2 455455555555 6666666666666655
Q ss_pred CCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccC
Q 048443 114 FDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTT 193 (486)
Q Consensus 114 ~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~ 193 (486)
++. ..|...+|+++.+..+ ++.....+|.++++|+.+++..+ ++.....+|.. .. |+.+.+ .+.++.+.
T Consensus 195 I~~------~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~-L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 195 LPA------STFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG-ITTVKL-PNGVTNIA 263 (401)
T ss_dssp ECT------TTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC-CSEEEE-ETTCCEEC
T ss_pred ech------hhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC-ccEEEe-CCCccEEC
Confidence 432 2222455666666533 44444555666666666666543 33233333433 32 555555 23344444
Q ss_pred CccccCCCCccEEECcCCccc-----cccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEc
Q 048443 194 PDTFMNGSDLRMVDLSHNLLQ-----GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256 (486)
Q Consensus 194 ~~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 256 (486)
..+|.++++|+.+++.+|.+. ...+.+|.+|++|+.+++.+ .+......+|.++++|+.+.+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 455555555555555554432 23334455555555555542 233333334444444444443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=134.59 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=62.4
Q ss_pred CccCeeecccCccc-ccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 128 TKIRHYLISKNNLT-GEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..++. |++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK-LKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT-CCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC-CCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34455555555544 34444445555555555555555432 33444443 5555555555544444444445555555
Q ss_pred ECcCCccccc-cCccCcCCCCCCEEEccCCccccCCC---ccccCCCCCCEEEc
Q 048443 207 DLSHNLLQGK-IPKSLANCAVLEISDLRNNQINDTFP---IWLGSLLELNILVL 256 (486)
Q Consensus 207 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 256 (486)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555555532 12445555555555555555554433 34455555555544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=131.63 Aligned_cols=126 Identities=21% Similarity=0.197 Sum_probs=114.4
Q ss_pred cCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECc
Q 048443 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209 (486)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 209 (486)
-+++++++|+++ .+|..+. ++|++|++++|.++ .+|..|..+.. |+.|++++|.+++..+..|.++++|++|+|+
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~-L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccC-CCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 368999999999 6776553 68999999999998 77888999997 9999999999999988999999999999999
Q ss_pred CCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 210 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+|.+++..+.+|..+++|++|++++|.++...+..|..+++|+.|++++|.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 999998888899999999999999999998777789999999999999974
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=130.28 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=92.2
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
.+.+++++|.++.+|. .+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++. |+
T Consensus 9 ~~~l~~~~~~l~~~p~-------~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-------GI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK-LT 79 (177)
T ss_dssp TTEEECCSSCCSSCCT-------TC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred CCEEEecCCCCccCCC-------CC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc-cC
Confidence 4567777777766532 11 357777777777777655556777778888888888777555555666665 77
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 241 (486)
+|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777777777766666777777888888888777555555677777888888877776543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=130.25 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=54.0
Q ss_pred CCCCEeeCcCCCCC-CCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFL-RELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
++|+.|++++|.+. +.+|..+..+++|++|+++ +|.+++. ..+.. +++|++|++++|.++.. +|..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~--l~~L~~L~Ls~n~i~~~------~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSI--ANLPK--LNKLKKLELSDNRVSGG------LEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCC--TTCCC--CTTCCEEECCSSCCCSC------THHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCc--hhhhc--CCCCCEEECCCCcccch------HHHHhh
Confidence 55666666666655 4555555666666666666 5555544 44444 55555555555555442 222222
Q ss_pred -cCccCeeecccCccccc-CCccccCCCCCCEEECcCCcCc
Q 048443 127 -STKIRHYLISKNNLTGE-IPSWICNLSSLYVLDLSDNNLS 165 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~i~ 165 (486)
+++|++|++++|++++. .+..+..+++|++|++++|.++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 44444444444444431 1234444444444444444444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-15 Score=140.95 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=169.3
Q ss_pred ccCcccceeeeehhc--cC---CChhhhhhccCCcccccCCcCCCC--------CCCCCEeeCcCCCCCCCCcccccCCC
Q 048443 6 CSELTRLTILLFYLM--TS---DSPFLDRLQRLSDFSGQIPPSLGN--------LNQLQWLDLAFNNFLRELPASIGSLS 72 (486)
Q Consensus 6 c~~l~~l~~~~~~~~--~~---~~~~l~~L~~~n~~~~~~p~~~~~--------l~~L~~L~Ls~n~~~~~~~~~~~~l~ 72 (486)
+.+|+.||++.+.+. .. ..+.+..+...++ ...+.+|.+ +++|+.|+|.+ ++..+.+.+|.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~--~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN--FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT--EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc--ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 456777777776644 11 1122111111111 222356777 99999999998 88888888999999
Q ss_pred CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC----CCCCCCCCCCCCcccc-c--------------------
Q 048443 73 SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY----FPRFDQHPTVLPWTTL-S-------------------- 127 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~----l~~~~~l~~l~p~~~~-~-------------------- 127 (486)
+|++|++. +|.+..+.+.+|.. +.++..+.+..+. ...+. +..+. +
T Consensus 125 ~L~~l~l~-~n~i~~i~~~aF~~--~~~l~~l~~~~~~~~~~~~~i~------~~~f~~~~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 125 NLKICQIR-KKTAPNLLPEALAD--SVTAIFIPLGSSDAYRFKNRWE------HFAFIEGEPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp TCCEEEBC-CSSCCEECTTSSCT--TTCEEEECTTCTHHHHTSTTTT------TSCEEESCCCEEEEEECTTCCHHHHHH
T ss_pred ccceEEcC-CCCccccchhhhcC--CCceEEecCcchhhhhcccccc------ccccccccccceeEEecCCCcHHHHHh
Confidence 99999999 99998888888887 8888888776632 12221 11111 2
Q ss_pred ------CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC
Q 048443 128 ------TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS 201 (486)
Q Consensus 128 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 201 (486)
.+++.+.+.++-...........+++|+.+++++|+++.....+|..+.. |+.+++.+| +..+.+.+|.+++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~-L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY-LLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC-CCEEECCcc-cceehHHHhhCCh
Confidence 23333434333111111111123789999999999999666677888887 999999998 8888889999999
Q ss_pred Ccc-EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEc
Q 048443 202 DLR-MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256 (486)
Q Consensus 202 ~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 256 (486)
+|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.+....+.+|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999 999998 777677889999999999999999999888889999999999863
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-14 Score=137.24 Aligned_cols=246 Identities=9% Similarity=0.061 Sum_probs=162.8
Q ss_pred cCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccc
Q 048443 69 GSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWI 148 (486)
Q Consensus 69 ~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~ 148 (486)
..+..++.+.+. +.++.+...+|.+ + +|+.+++..+ ++.++ ..+|.-.+|+++.+.. .++...+.+|
T Consensus 110 ~~~~~l~~i~ip--~~i~~I~~~aF~~--~-~L~~i~l~~~-i~~I~------~~aF~~~~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 110 EILKGYNEIILP--NSVKSIPKDAFRN--S-QIAKVVLNEG-LKSIG------DMAFFNSTVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp EECSSCSEEECC--TTCCEECTTTTTT--C-CCSEEECCTT-CCEEC------TTTTTTCCCCEEECCT-TCCEECSSTT
T ss_pred EecCCccEEEEC--CccCEehHhhccc--C-CccEEEeCCC-ccEEC------HHhcCCCCceEEEeCC-CccEehHHHh
Confidence 345677777774 4666666666766 5 6888888766 65542 2233334688888875 6665666788
Q ss_pred cCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCC
Q 048443 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLE 228 (486)
Q Consensus 149 ~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 228 (486)
.++++|+.+++++|+++.....+|. ... |+.+.+.. .+..+...+|.++++|+.+++..| ++.....+|.+ .+|+
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~-L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAG-IEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCC-CSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecc-cCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 8888888888888888854444454 454 88888874 477777788888888888888875 55455667776 6788
Q ss_pred EEEccCCccccCCCccccCCCCCCEEEcCccCCC--ccccCChhhhhccccccccccccchhccccccccccccccccCC
Q 048443 229 ISDLRNNQINDTFPIWLGSLLELNILVLIQQLPC--FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFP 306 (486)
Q Consensus 229 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (486)
.+.+. +.+......+|.++++|+.+.+.++... ....++...|..++
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~------------------------------ 300 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP------------------------------ 300 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT------------------------------
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc------------------------------
Confidence 88884 4566666778888888888887765210 11234555454444
Q ss_pred CCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
+|+.+++. +.++......|.++++|+.++|..| ++.....+|.++ +|+.+++++|
T Consensus 301 ----------------------~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 301 ----------------------KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ----------------------TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred ----------------------cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 35555555 3355455566777777777777544 554555677777 7777777766
Q ss_pred CC
Q 048443 387 RL 388 (486)
Q Consensus 387 ~l 388 (486)
.+
T Consensus 356 ~~ 357 (401)
T 4fdw_A 356 TP 357 (401)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=124.82 Aligned_cols=128 Identities=21% Similarity=0.168 Sum_probs=112.2
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
..+.+++++++++ .+|..+. ++|++|++++|++++..+..+..++. |++|++++|.+++..+..|..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCccc-ccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4578999999998 5665443 69999999999999766667788887 999999999999888888899999999999
Q ss_pred cCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 9999997777778999999999999999997777778899999999999984
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-15 Score=128.21 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=87.7
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
+.+|+.|++++|.++.+|. ... .++|++|++++|.+++. ..|..+++|++|++++|++++..+..+..++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-------~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCceEEEeeCCCCchhHH-------hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 6677777777777765422 222 34777777777777754 4677777888888888887754444456677
Q ss_pred CCCcEEEccCccccccCCc--cccCCCCccEEECcCCccccccCcc----CcCCCCCCEEEccCCccc
Q 048443 177 GGLSVLSLQGKNFFGTTPD--TFMNGSDLRMVDLSHNLLQGKIPKS----LANCAVLEISDLRNNQIN 238 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 238 (486)
. |++|++++|.+.. +|. .+..+++|++|++++|.++ ..|.. +..+++|++|++++|.+.
T Consensus 89 ~-L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 D-LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp T-CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred C-CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6 7777777777754 333 5667777888888888776 44543 677777888877777654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-17 Score=142.45 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=69.7
Q ss_pred hhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccc
Q 048443 92 WLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQ 170 (486)
Q Consensus 92 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 170 (486)
.+.. +++|++|++++|.++.+ | .+. +++|++|++++|.++ .+|..+..+++|++|++++|++++ +|
T Consensus 43 ~~~~--l~~L~~L~ls~n~l~~l-------~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~- 109 (198)
T 1ds9_A 43 TLST--LKACKHLALSTNNIEKI-------S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS- 109 (198)
T ss_dssp HHHH--TTTCSEEECSEEEESCC-------C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-
T ss_pred HHhc--CCCCCEEECCCCCCccc-------c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-
Confidence 4444 55555555555555442 2 222 455555555555555 444445555566666666666553 33
Q ss_pred hhhhcCCCCcEEEccCccccccCC-ccccCCCCccEEECcCCccccccCc----------cCcCCCCCCEEEccCCccc
Q 048443 171 CLGNFSGGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKIPK----------SLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 171 ~l~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~ 238 (486)
.+..++. |++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|++|| +|.++
T Consensus 110 ~~~~l~~-L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 110 GIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHH-SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccCCC-CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 4555554 6666666666554322 3455566666666666666544333 255666666665 44443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-15 Score=127.51 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=54.0
Q ss_pred CCCCCCCCCEeeCcCCCCCCCCcccccCC-CCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCC
Q 048443 43 SLGNLNQLQWLDLAFNNFLRELPASIGSL-SSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
.+.++++|+.|++++|++... +. +..+ ++|++|+++ +|.+++. ..+.. +++|++|++++|.++.+|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls-~N~l~~~--~~l~~--l~~L~~L~Ls~N~l~~~~------ 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFS-DNEIRKL--DGFPL--LRRLKTLLVNNNRICRIG------ 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECC-SSCCCEE--CCCCC--CSSCCEEECCSSCCCEEC------
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECC-CCCCCcc--ccccc--CCCCCEEECCCCcccccC------
Confidence 345556666666666665533 32 3333 366666666 6666543 34444 555555555555555431
Q ss_pred Ccccc-cCccCeeecccCcccccCCc--cccCCCCCCEEECcCCcCc
Q 048443 122 PWTTL-STKIRHYLISKNNLTGEIPS--WICNLSSLYVLDLSDNNLS 165 (486)
Q Consensus 122 p~~~~-~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~i~ 165 (486)
+..+. +++|++|++++|+++ .+|. .+..+++|+.|++++|.++
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 11112 445555555555544 2332 3444444555555554444
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-17 Score=143.91 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=124.3
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcc------cccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPA------SIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~------~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l 117 (486)
+.....++.++++.+.+.+..|. .|..+++|++|+++ +|.+++ +| .+.. +++|++|++++|.++.+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls-~n~l~~-l~-~~~~--l~~L~~L~l~~n~l~~l--- 85 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEK-IS-SLSG--MENLRILSLGRNLIKKI--- 85 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECS-EEEESC-CC-CHHH--HTTCCEEEEEEEEECSC---
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECC-CCCCcc-cc-cccc--CCCCCEEECCCCCcccc---
Confidence 44456777777877777777666 88999999999999 999987 56 7888 99999999999999874
Q ss_pred CCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCccccc-chhhhcCCCCcEEEccCccccccCCc
Q 048443 118 PTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELL-QCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 118 ~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
|..+. +++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..++. |++|++++|.+.+..|.
T Consensus 86 ----~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~-L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 86 ----ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK-LEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ----SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT-CSEEEECSCHHHHHHHT
T ss_pred ----cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC-CCEEEecCCcccccccc
Confidence 44455 6899999999999985 44 68889999999999999985332 46778887 99999999999877654
Q ss_pred c----------ccCCCCccEEECcCCccc
Q 048443 196 T----------FMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 196 ~----------~~~l~~L~~L~L~~N~l~ 214 (486)
. +..+++|+.|| +|.++
T Consensus 159 ~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 159 NNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3 77889999987 66665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=117.50 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=62.3
Q ss_pred CeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcC
Q 048443 131 RHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210 (486)
Q Consensus 131 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 210 (486)
+++++++|.++ .+|..+. ++|++|+|++|++++..|..|..++. |++|++++|++++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQ-LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCccc-CCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555555 3443332 45556666666665554555555554 66666666666555555566666677777777
Q ss_pred CccccccCccCcCCCCCCEEEccCCcccc
Q 048443 211 NLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 211 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
|.+++..+..|..+++|++|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 77665555556667777777777776653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=115.48 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 100 NFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 100 ~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
+.+.+++++|.++++|. .+ .++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++ |
T Consensus 10 ~~~~l~~s~n~l~~ip~-------~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~-L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-------GI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-L 80 (170)
T ss_dssp ETTEEECTTSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-C
T ss_pred CCCEEEeCCCCcCccCc-------cC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC-C
Confidence 35688888888888653 22 378899999999999877888999999999999999999766666788887 9
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCcccc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (486)
++|++++|++++..+..|..+++|++|+|++|.++.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999999998888889999999999999998873
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=115.90 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=57.7
Q ss_pred CeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcC
Q 048443 131 RHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210 (486)
Q Consensus 131 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 210 (486)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..++. |++|++++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN-LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcC-CCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34455555554 3343332 45555555555555444555555554 55555555555554444555666666666666
Q ss_pred CccccccCccCcCCCCCCEEEccCCccc
Q 048443 211 NLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 211 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|.+++..+..|..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444666666666666666665
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-13 Score=113.71 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=87.3
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
-+.+++++|.++.+|. .+ .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..++. |+
T Consensus 14 ~~~l~~~~n~l~~iP~-------~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~-L~ 84 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-------GI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ-LT 84 (174)
T ss_dssp SSEEECCSSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred CcEEEeCCCCCCccCC-------Cc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch-hh
Confidence 3678888888887643 22 378899999999998777888999999999999999998655555678887 99
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccc
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
+|++++|++.+..+..|..+++|++|+|++|.+.
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999999998877777889999999999999887
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-12 Score=122.35 Aligned_cols=204 Identities=8% Similarity=-0.049 Sum_probs=113.6
Q ss_pred ccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCC
Q 048443 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFD 115 (486)
Q Consensus 36 ~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~ 115 (486)
++..-..+|.++.+|+.+.|.. .+..+...+|.++++|+.+++. . .++.+...+|.+ +.+|+.+.+..+ +..++
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp-~-~l~~I~~~aF~~--c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIP-D-SVKMIGRCTFSG--CYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTT--CTTCCCCCCCTT-CCEEC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeC-C-CceEccchhhcc--cccchhhcccCc-eeeec
Confidence 4444456889999999999974 4677777889999999999986 4 366556667777 888888776644 33221
Q ss_pred CCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCc
Q 048443 116 QHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 116 ~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
...|.-..+....+.. .+......+|.++.+|+.+.+.++... ....+|..... |+.+++..+ +..+...
T Consensus 133 ------~~aF~~~~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~-L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 133 ------VEAFKGCDFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGK-LKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp ------TTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTT-CCBCCCCTT-CCEECTT
T ss_pred ------ceeeecccccccccCc-cccccchhhhcccCCCcEEecCCccce-eccccccCCCC-ceEEEcCCC-ceEeCch
Confidence 1122211122222211 122233445666666666666544322 33444555554 666666544 4444455
Q ss_pred cccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCc
Q 048443 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 258 (486)
+|.++..|+.+.+..+... +........+|+.+.+... +.......|..+..++.+.+..
T Consensus 203 ~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred hhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 5666666666666554332 2222333455666555432 2223344555556666655544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=120.88 Aligned_cols=294 Identities=10% Similarity=-0.006 Sum_probs=177.9
Q ss_pred CCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccC
Q 048443 60 FLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKN 138 (486)
Q Consensus 60 ~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n 138 (486)
++.+...+|.++.+|+.+.+. . .++.+...+|.+ +.+|+.+++..+ ++.++ ...|. +.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp-~-~i~~I~~~aF~~--c~~L~~i~lp~~-l~~I~------~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIP-S-TVREIGEFAFEN--CSKLEIINIPDS-VKMIG------RCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECC-T-TCCEECTTTTTT--CTTCCEECCCTT-CCEEC------TTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeC-C-CccCcchhHhhC--CCCCcEEEeCCC-ceEcc------chhhcccccchhhcccCc
Confidence 345556788888889888885 3 477666777887 888988888755 55442 22333 677777777654
Q ss_pred cccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccC
Q 048443 139 NLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP 218 (486)
Q Consensus 139 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 218 (486)
+......+|.+...++....... ......+|..... |+.+.+..+ +..+...+|.++.+|+.+++..+ ++....
T Consensus 128 -l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~-L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 128 -LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCES-LEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp -CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred -eeeecceeeecccccccccCccc--cccchhhhcccCC-CcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCc
Confidence 44355567777654443333222 2233456777776 888888754 34466677888888888888776 444566
Q ss_pred ccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccccccc
Q 048443 219 KSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFS 298 (486)
Q Consensus 219 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 298 (486)
.+|.++..|+.+.+..+... +...+....+|+.+.+.. ....+....|..+..++.+.+..+... -....+..
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~----~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~ 274 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPD----SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN 274 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECT----TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT
T ss_pred hhhccccccceeecCCCceE--eehhhcccCCCceEEECC----CceecccccccccccceeEEcCCCcce-eecccccc
Confidence 77888888888877766442 233344456788877755 334455566777777776665543110 00000000
Q ss_pred ccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCC
Q 048443 299 FDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNL 378 (486)
Q Consensus 299 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 378 (486)
...+.........+.......+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|
T Consensus 275 -------~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 275 -------CSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp -------CTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred -------ccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 011122222222222222333566777777654 55455666777788888887644 654556677777888
Q ss_pred CEEeCCCC
Q 048443 379 ESLDLSKN 386 (486)
Q Consensus 379 ~~L~Ls~N 386 (486)
+.+++..|
T Consensus 346 ~~i~lp~~ 353 (394)
T 4fs7_A 346 SNINFPLS 353 (394)
T ss_dssp CEECCCTT
T ss_pred CEEEECcc
Confidence 88777655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-14 Score=139.68 Aligned_cols=167 Identities=17% Similarity=0.130 Sum_probs=83.6
Q ss_pred CCCCeeccCCCCcccccCCchhccc---cCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc
Q 048443 72 SSLERLDTFPPMKIHGNIPKWLLNP---SMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW 147 (486)
Q Consensus 72 ~~L~~L~L~~~n~i~~~~p~~~~~~---~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~ 147 (486)
+.|++|+++ +|.++......+... ..++|++|+|++|.++... ...... +++|++|+|++|.++......
T Consensus 72 ~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLA-GVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----LRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp TTCCEEECT-TSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred hhCCEEEec-CCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 445555555 555543332222220 0245666666666554210 000011 445666666666665322222
Q ss_pred c-----cCCCCCCEEECcCCcCccc----ccchhhhcCCCCcEEEccCccccccC----CccccCCCCccEEECcCCccc
Q 048443 148 I-----CNLSSLYVLDLSDNNLSGE----LLQCLGNFSGGLSVLSLQGKNFFGTT----PDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 148 ~-----~~l~~L~~L~Ls~N~i~~~----~~~~l~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~ 214 (486)
+ ...++|++|+|++|.++.. ++..+...+. |++|+|++|.+.+.. ...+...++|++|+|++|.++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 2 2345666666666666532 2223344444 666666666665422 334455566777777777765
Q ss_pred cc----cCccCcCCCCCCEEEccCCccccCCCccc
Q 048443 215 GK----IPKSLANCAVLEISDLRNNQINDTFPIWL 245 (486)
Q Consensus 215 ~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 245 (486)
.. ++.++...++|++|+|++|.|.+.....+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 42 22334455677777777777664433333
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-13 Score=134.51 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=34.9
Q ss_pred CccCeeecccCcccc----cCCccccCCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEccCccccccC----Cc
Q 048443 128 TKIRHYLISKNNLTG----EIPSWICNLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQGKNFFGTT----PD 195 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~~n~i~~~~----~~ 195 (486)
++|++|+|++|.++. .++..+..+++|++|+|++|.+++.. +..+...+. |++|++++|.+++.. ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~-L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC-CCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC-cCeEECCCCCCCHHHHHHHHH
Confidence 344455555554432 12222334444555555555444211 222233332 455555554443321 11
Q ss_pred cccCCCCccEEECcCCccc
Q 048443 196 TFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~ 214 (486)
.+...++|++|+|++|.++
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 2223344455555555444
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=119.02 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=80.0
Q ss_pred cccccCCcCCCCCCCCCEeeCcC-CCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCC
Q 048443 35 DFSGQIPPSLGNLNQLQWLDLAF-NNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPR 113 (486)
Q Consensus 35 ~~~~~~p~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~ 113 (486)
++++ +|. +..+++|+.|+|++ |++.+..+..|.++++|++|+|+ +|++++..|..|.+ +++|++|+|++|+|+.
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~--l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHF--TPRLSRLNLSFNALES 94 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGS--CSCCCEEECCSSCCSC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcC--CcCCCEEeCCCCccce
Confidence 5554 787 99999999999996 99988888999999999999999 99999999999999 9999999999999988
Q ss_pred CCCCCCCCCcccccCccCeeecccCccc
Q 048443 114 FDQHPTVLPWTTLSTKIRHYLISKNNLT 141 (486)
Q Consensus 114 ~~~l~~l~p~~~~~~~L~~L~Ls~n~l~ 141 (486)
+|. ..+....|++|+|.+|.+.
T Consensus 95 ~~~------~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 95 LSW------KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCS------TTTCSCCCCEEECCSSCCC
T ss_pred eCH------HHcccCCceEEEeeCCCcc
Confidence 642 2333223777777777776
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-10 Score=111.37 Aligned_cols=294 Identities=12% Similarity=0.053 Sum_probs=154.5
Q ss_pred CcCCCCCC-CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCC---cccccCCchhccccCCCCcEEEccCCCCCCCCC
Q 048443 41 PPSLGNLN-QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPM---KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ 116 (486)
Q Consensus 41 p~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n---~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~ 116 (486)
..+|.++. .|+.+.+.. .+..+...+|.++++|+.+.+. .| .++.+-..+|.. +.+|+.+.+..+ ++.++
T Consensus 56 ~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~-~n~p~~l~~Ig~~aF~~--c~~L~~i~~~~~-~~~I~- 129 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQ-DNKPSCVKKIGRQAFMF--CSELTDIPILDS-VTEID- 129 (394)
T ss_dssp TTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEG-GGCCCCCCEECTTTTTT--CTTCCBCGGGTT-CSEEC-
T ss_pred HhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeec-CCCCCeeeEechhhchh--cccceeeccCCc-cceeh-
Confidence 45677664 477777764 3566667778888888887775 43 255455566666 777777666543 33331
Q ss_pred CCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCc
Q 048443 117 HPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 117 l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
...+. +.+|+.+.+..+- +.....+|..+..|+.+.+..+ ++.....+|.. .. |+.+.+..+- ......
T Consensus 130 -----~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~-l~~i~ip~~~-~~i~~~ 199 (394)
T 4gt6_A 130 -----SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TA-LTQIHIPAKV-TRIGTN 199 (394)
T ss_dssp -----TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CC-CSEEEECTTC-CEECTT
T ss_pred -----hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cc-eeEEEECCcc-cccccc
Confidence 12333 6777777776543 3355566777777777777654 33233344433 33 7777765432 234445
Q ss_pred cccCCCCccEEECcCCccccccCcc--------------CcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCC
Q 048443 196 TFMNGSDLRMVDLSHNLLQGKIPKS--------------LANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLP 261 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~--------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~ 261 (486)
+|..+.+++......+.... .... +.....+..+.+.. .+......+|..+..|+.+.+..+
T Consensus 200 af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-- 275 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-- 275 (394)
T ss_dssp TTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT--
T ss_pred hhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc--
Confidence 56666666665544433221 1100 11112223333321 122233344555555555555432
Q ss_pred CccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccc
Q 048443 262 CFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFD 341 (486)
Q Consensus 262 ~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 341 (486)
...++...|..+..|+.+.+... +.. +.......+.+|+.+++..+ ++
T Consensus 276 --~~~I~~~aF~~c~~L~~i~l~~~--i~~---------------------------I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 276 --VVSIGTGAFMNCPALQDIEFSSR--ITE---------------------------LPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp --CCEECTTTTTTCTTCCEEECCTT--CCE---------------------------ECTTTTTTCTTCCEEECCTT-CC
T ss_pred --cceecCcccccccccccccCCCc--ccc---------------------------cCceeecCCCCcCEEEeCCc-cc
Confidence 22344444555555554443321 000 00001111345666666543 44
Q ss_pred ccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 342 GEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 342 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.....+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++.
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 345566777777777777544 554555677777777777777664
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=117.11 Aligned_cols=86 Identities=20% Similarity=0.080 Sum_probs=41.5
Q ss_pred cCccCeeeccc-CcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 127 STKIRHYLISK-NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 127 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
+++|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..++. |+.|+|++|++++..+..|..++ |+.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR-LSRLNLSFNALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC-CCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcC-CCEEeCCCCccceeCHHHcccCC-ceE
Confidence 34455555553 5555444444555555555555555555444444444444 55555555555444433333333 445
Q ss_pred EECcCCccc
Q 048443 206 VDLSHNLLQ 214 (486)
Q Consensus 206 L~L~~N~l~ 214 (486)
|+|.+|.+.
T Consensus 108 l~l~~N~~~ 116 (347)
T 2ifg_A 108 LVLSGNPLH 116 (347)
T ss_dssp EECCSSCCC
T ss_pred EEeeCCCcc
Confidence 555544443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-09 Score=103.93 Aligned_cols=299 Identities=8% Similarity=0.054 Sum_probs=178.6
Q ss_pred cccccCCcCCCCCCCCCEeeCcCCC---CCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 35 DFSGQIPPSLGNLNQLQWLDLAFNN---FLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 35 ~~~~~~p~~~~~l~~L~~L~Ls~n~---~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
.++..-..+|.++.+|+.+.++.|. +..+...+|.++.+|+.+.+. +.++.+....|.. +.+|+.+.+..+ +
T Consensus 74 svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~--~~~~~I~~~aF~~--c~~L~~i~lp~~-~ 148 (394)
T 4gt6_A 74 TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL--DSVTEIDSEAFHH--CEELDTVTIPEG-V 148 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG--TTCSEECTTTTTT--CTTCCEEECCTT-C
T ss_pred CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC--Cccceehhhhhhh--hcccccccccce-e
Confidence 3444445689999999999998764 555667789999999998875 3466566677777 899999998754 3
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
..++ ...+. +..|+.+.+..+ ++.....+|.+ ..|+.+.+..+-.. ....+|..... ++......+...
T Consensus 149 ~~I~------~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~-l~~~~~~~~~~~ 218 (394)
T 4gt6_A 149 TSVA------DGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFA-LSTITSDSESYP 218 (394)
T ss_dssp CEEC------TTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTT-CCEEEECCSSSC
T ss_pred eeec------ccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccc-cceecccccccc
Confidence 3331 22333 677888887665 44344455554 56787777654332 33445555554 666555433322
Q ss_pred ccCCc-------------cccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcC
Q 048443 191 GTTPD-------------TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI 257 (486)
Q Consensus 191 ~~~~~-------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 257 (486)
..... .+.....+....+..+ ++.....+|.++.+|+.+.+.++.. .....+|.+++.|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred cccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCcccccccccccccCC
Confidence 11100 0112233444444332 3334455677777777777765543 3455667777777777775
Q ss_pred ccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccc
Q 048443 258 QQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSS 337 (486)
Q Consensus 258 ~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 337 (486)
. ....++...|..+.+|+.+.+..+ +. .+ .......+.+|+.+.+..
T Consensus 297 ~----~i~~I~~~aF~~c~~L~~i~lp~~--v~-----~I----------------------~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 297 S----RITELPESVFAGCISLKSIDIPEG--IT-----QI----------------------LDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp T----TCCEECTTTTTTCTTCCEEECCTT--CC-----EE----------------------CTTTTTTCTTCCEEEECT
T ss_pred C----cccccCceeecCCCCcCEEEeCCc--cc-----Ee----------------------hHhHhhCCCCCCEEEECc
Confidence 4 445667777777777777666442 00 00 011112246788888865
Q ss_pred ccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 338 NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 338 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+ ++.....+|.++++|+.+++.++... ..++....+|+.+.+..|.
T Consensus 344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 4 66566778999999999999988654 2456777888888776553
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-08 Score=94.51 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=43.6
Q ss_pred cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
+.+|+.+++.++.++......|.++.+|+.++|..+ ++.....+|.++++|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 456788888777777566677888888888888754 66455668888888888877543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-07 Score=88.43 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
..++.+.+..+ +.......|..+++|+.+.+.++.++.....+|.++.+|+.++|..+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 44666766543 44455667899999999999999998677789999999999999755
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-09 Score=102.93 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=26.0
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCcccc--CCCCCCEEECc
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWIC--NLSSLYVLDLS 160 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls 160 (486)
+++|+.|++++|.-..+ +. +..++|++|++..+.++......+. .+++|+.|+|+
T Consensus 171 ~P~L~~L~L~g~~~l~l-------~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSI-------GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCCEEEEECCBTCBC-------CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEeCCCCcee-------cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 56666666665521111 11 1245566666665555432222222 45666666653
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.78 E-value=9e-09 Score=98.96 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred hhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCc--CCCCCCEEEcc
Q 048443 172 LGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLA--NCAVLEISDLR 233 (486)
Q Consensus 172 l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~ 233 (486)
+..++. |+.|++++|.-.. .+. +. +++|++|++..+.++......+. .+++|++|+|+
T Consensus 168 l~~~P~-L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPL-LNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTT-CCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCC-CcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 334443 6666665542111 111 22 45566666655554432222222 45556655553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-08 Score=86.12 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=46.0
Q ss_pred cccCCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEccCcccccc----CCccccCCCCccEEEC--cCCccccc
Q 048443 147 WICNLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDL--SHNLLQGK 216 (486)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L--~~N~l~~~ 216 (486)
.+...++|++|+|++|.+.... ...+...+. |++|+|++|.|... +...+...++|++|+| ++|.++..
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~-L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT-LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS-CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCC-cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 3444455666666666554321 222233333 55566665555432 2233444556666666 55666532
Q ss_pred ----cCccCcCCCCCCEEEccCCccc
Q 048443 217 ----IPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 217 ----~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+...+...++|++|++++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233444566666666666653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.6e-08 Score=88.21 Aligned_cols=63 Identities=25% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCC--CCCEEECcCCcCcc
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLS--SLYVLDLSDNNLSG 166 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~i~~ 166 (486)
+++|+.|+|++|+|+.++. ++..+. +++|++|+|++|++++. ..+..+. +|++|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~----l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDD----MSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGG----GTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCcc----chhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 5666666666666665433 222233 45555555555555532 1122222 55555555555543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=9.6e-08 Score=82.77 Aligned_cols=15 Identities=20% Similarity=0.043 Sum_probs=7.5
Q ss_pred CCCCCCCCEeeCcCC
Q 048443 44 LGNLNQLQWLDLAFN 58 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n 58 (486)
+...+.|++|+|++|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 344455555555555
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-07 Score=84.81 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=20.9
Q ss_pred CCCCCCEEECcCCcCcc--cccchhhhcCCCCcEEEccCccccc
Q 048443 150 NLSSLYVLDLSDNNLSG--ELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 150 ~l~~L~~L~Ls~N~i~~--~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
++++|+.|+|++|++++ .++..+..+++ |+.|+|++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~-L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPN-LKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTT-CCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCC-CCEEECCCCccCC
Confidence 45556666666665554 22334444444 5555555555543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.83 E-value=6.5e-06 Score=69.56 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=38.1
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCc-Ccccccchhhhc---CCCCcEEEccCcc-ccccCCccccCCCCc
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNN-LSGELLQCLGNF---SGGLSVLSLQGKN-FFGTTPDTFMNGSDL 203 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~l~~~---~~~L~~L~L~~n~-i~~~~~~~~~~l~~L 203 (486)
.|++||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ..+|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666666554333345566666666666663 443222223221 0015555555542 333222223334444
Q ss_pred cEEECcCC
Q 048443 204 RMVDLSHN 211 (486)
Q Consensus 204 ~~L~L~~N 211 (486)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.79 E-value=5.7e-06 Score=69.92 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=43.8
Q ss_pred CCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc-ccccCCccccCC----CCccEEECcCCc-cccccCccCcCCC
Q 048443 152 SSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN-FFGTTPDTFMNG----SDLRMVDLSHNL-LQGKIPKSLANCA 225 (486)
Q Consensus 152 ~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~ 225 (486)
..|+.||++++.++..-...+..++. |+.|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~-L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQY-VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSC-CCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCC-CCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 45667777776666544444555554 6666666663 443322223332 246666666653 4433223344556
Q ss_pred CCCEEEccCCc
Q 048443 226 VLEISDLRNNQ 236 (486)
Q Consensus 226 ~L~~L~L~~N~ 236 (486)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666553
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=6.6e-05 Score=64.66 Aligned_cols=82 Identities=11% Similarity=0.156 Sum_probs=36.0
Q ss_pred CccCeeecccC-cccc----cCCccccCCCCCCEEECcCCcCccccc----chhhhcCCCCcEEEccCccccccC----C
Q 048443 128 TKIRHYLISKN-NLTG----EIPSWICNLSSLYVLDLSDNNLSGELL----QCLGNFSGGLSVLSLQGKNFFGTT----P 194 (486)
Q Consensus 128 ~~L~~L~Ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~----~~l~~~~~~L~~L~L~~n~i~~~~----~ 194 (486)
+.|++|+|++| +|.. .+..++..-+.|+.|+|++|+|..... ..+..-.. |+.|+|++|.|.... .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~t-L~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS-LRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS-CCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCc-cCeEecCCCcCCHHHHHHHH
Confidence 34455555543 4432 122334444556666666665553222 22222232 555555555554321 1
Q ss_pred ccccCCCCccEEECcC
Q 048443 195 DTFMNGSDLRMVDLSH 210 (486)
Q Consensus 195 ~~~~~l~~L~~L~L~~ 210 (486)
.++..-+.|++|+|++
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2233334455555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00061 Score=54.66 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=27.4
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcc
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKI 85 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i 85 (486)
.+|..+. ++|+.|+|++|+|..+.+..|..+++|++|+|. +|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG-ANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec-CCCe
Confidence 4454433 357777777777766666666666666666666 5544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0007 Score=54.34 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=33.3
Q ss_pred EEEccccccc-ccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 332 GIILSSNRFD-GEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 332 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5556666664 23443322 356777777777775555566777777777777776
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00052 Score=59.01 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=4.8
Q ss_pred CCCCEeeCcC
Q 048443 48 NQLQWLDLAF 57 (486)
Q Consensus 48 ~~L~~L~Ls~ 57 (486)
+.|++|+|++
T Consensus 41 ~~L~~L~L~~ 50 (197)
T 1pgv_A 41 TDLKEVNINN 50 (197)
T ss_dssp SSCCEEECTT
T ss_pred CCccEEECCC
Confidence 4444555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 486 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-18 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-07 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 7e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 4e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 6e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 83.6 bits (205), Expect = 2e-18
Identities = 59/278 (21%), Positives = 93/278 (33%), Gaps = 23/278 (8%)
Query: 157 LDLSDNNLSG--ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214
LDLS NL + L N + N G P + L + ++H +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQC 274
G IP L+ L D N ++ T P + SL L + G +P Y
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN--RISGAIPDSYGSF 172
Query: 275 WNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGII 334
S+ R ++ + + + ++ + L
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 335 LSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFF 394
L+ + + ++ L L +N + G +P L L L SL++S
Sbjct: 233 LAFDLGKVGLSKNL------NGLDLRNNRIYGTLPQGLTQLKFLHSLNVS---------- 276
Query: 395 NATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPK 432
NNL G IPQ F S++ N LCG PLP
Sbjct: 277 ---FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 55.5 bits (132), Expect = 5e-09
Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 11/159 (6%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN 95
SG IP S G+ ++L N L + L
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKI---------PPTFANLNLAFVDLSRNMLEG 211
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLY 155
+ F ++ + L LS + + N + G +P + L L+
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP 194
L++S NNL GE+ Q GN V + +P
Sbjct: 272 SLNVSFNNLCGEIPQ-GGNLQ-RFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 38/235 (16%), Positives = 67/235 (28%), Gaps = 16/235 (6%)
Query: 37 SGQIPPSLGNLNQLQWLDLAFN-NFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN 95
IP SL NL L +L + N + +P +I L+ L L
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 96 PSMKNFSYL-NLSKNYFPRFDQHPTV-----LPWTTLSTKIRHYLISKNNLTGEIPSWIC 149
++ + N P +S I S + L +
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV--------LSLQGKNFFGTTPDTFMNGS 201
L+ ++ NL+ L + KN
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 202 DLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
+L +DL +N + G +P+ L L ++ N + P G+L ++
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 68.1 bits (165), Expect = 5e-13
Identities = 62/367 (16%), Positives = 127/367 (34%), Gaps = 33/367 (8%)
Query: 27 LDRLQRLSDFSGQIP--PSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK 84
LD++ L I + LN L ++ + N P + +L+ L +
Sbjct: 43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100
Query: 85 IHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS----TKIRHYLISKNNL 140
L N + ++ + + L ++ + + + +
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160
Query: 141 TGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNG 200
G + + L++L L+ D + + + L L TP +
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-- 218
Query: 201 SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPI-WLGSLLELNILVLIQQ 259
++L + L+ N L+ +LA+ L DL NNQI++ P+ L L EL +
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 276
Query: 260 LPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319
+ L + N + + S + ++N F+ +I+ +
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN----------NISDISPVS 326
Query: 320 MMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLE 379
+T L+ + ++N+ +S+ANL + L N + P L +LT +
Sbjct: 327 SLTK------LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376
Query: 380 SLDLSKN 386
L L+
Sbjct: 377 QLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 58.5 bits (140), Expect = 6e-10
Identities = 50/357 (14%), Positives = 109/357 (30%), Gaps = 27/357 (7%)
Query: 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100
S +L+Q+ L ++ + + L++L +++ F ++ P L +
Sbjct: 37 TVSQTDLDQVTTLQADRLG-IKSID-GVEYLNNLTQIN-FSNNQLTDITPLKNLTKLVDI 93
Query: 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS 160
N + P + + + + +S + L
Sbjct: 94 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 153
Query: 161 DNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM---VDLSHNLLQGKI 217
+ + + ++ +L+ + + L + ++N +
Sbjct: 154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 213
Query: 218 PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNA 277
P L+ L NQ+ D L SL L L L Q N
Sbjct: 214 PLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL-------------ANNQISNL 256
Query: 278 MKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSS 337
+ ++L ++ + + N+ + ++ L + L
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316
Query: 338 NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFF 394
N P +++L LQ L A+N + S L +LTN+ L N+++ L
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL 369
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.3 bits (142), Expect = 2e-10
Identities = 37/275 (13%), Positives = 83/275 (30%), Gaps = 22/275 (8%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
S L ++P + +LDL +N ++ N L L L +P
Sbjct: 18 SDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPG 73
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNI-- 253
F L + LS N L+ K L + + ++ + L ++ + +
Sbjct: 74 AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133
Query: 254 --LVLIQQLPCFMGKLPSKYFQCWNAMK--------FANSSQLRYMENFLSSYFSFDFYR 303
L + + + ++L N ++ +
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193
Query: 304 YFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363
++ ++ + + +N ++P +A+ K +QV+ L +NN
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253
Query: 364 LQG------HIPSCLGSLTNLESLDLSKNRLTFLE 392
+ P + + L N + + E
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.7 bits (138), Expect = 7e-10
Identities = 41/221 (18%), Positives = 70/221 (31%), Gaps = 14/221 (6%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLN 95
+ NL L L L N + P + L LERL + N K L
Sbjct: 43 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY------LSKNQLKELPE 96
Query: 96 PSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLY 155
K L + +N + + + + + +G + L
Sbjct: 97 KMPKTLQELRVHENEITKVRKS---VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153
Query: 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215
+ ++D N++ L+ L L G + ++L + LS N +
Sbjct: 154 YIRIADTNIT----TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 216 KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256
SLAN L L NN++ P L + ++ L
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 249
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 6e-09
Identities = 25/189 (13%), Positives = 45/189 (23%), Gaps = 11/189 (5%)
Query: 200 GSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259
D ++ LS NLL +L L +L ++ +L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL----DLS 85
Query: 260 LPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319
+ + ++L + Y N+
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 320 MMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLE 379
+ + ++N + L+ L L L N+L IP L
Sbjct: 146 PTPKLEKLSL------ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198
Query: 380 SLDLSKNRL 388
L N
Sbjct: 199 FAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 13/191 (6%)
Query: 201 SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260
+ V+ L +P L I L N + L L L L +
Sbjct: 10 ASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA- 65
Query: 261 PCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQM 320
+ + L N L S
Sbjct: 66 ---------ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 321 MTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLES 380
+ + L+ + L N P + L+ L LA+NNL L L NL++
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 381 LDLSKNRLTFL 391
L L +N L +
Sbjct: 177 LLLQENSLYTI 187
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 32/197 (16%), Positives = 49/197 (24%), Gaps = 15/197 (7%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSM 98
+PP L L L+ N A++ + L +L+ + L
Sbjct: 24 ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
+ S+ L + N +P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDV------------SFNRLTSLPLGALRGLGELQEL 129
Query: 159 LSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP 218
N L L + L LSL N +L + L N L IP
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Query: 219 KSLANCAVLEISDLRNN 235
K +L + L N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (117), Expect = 2e-07
Identities = 21/243 (8%), Positives = 55/243 (22%), Gaps = 8/243 (3%)
Query: 145 PSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204
IC+ S+ ++ ++ + + L F DL
Sbjct: 2 HHRICHCSNRVF-LCQESKVT----EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 56
Query: 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFM 264
+++S N + I + + N + N+ L+
Sbjct: 57 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116
Query: 265 GKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD 324
+ + SF + + +
Sbjct: 117 HLPDVHKIHSLQKVLLDIQDNINIHTIE---RNSFVGLSFESVILWLNKNGIQEIHNCAF 173
Query: 325 KIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS 384
+ + + +N + G +L ++ + L +L L +
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
Query: 385 KNR 387
+
Sbjct: 234 NLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 7e-05
Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 3/191 (1%)
Query: 201 SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260
+ + L+ + + LE ++ N + + + S L + I++
Sbjct: 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88
Query: 261 PCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQM 320
+ P + N S+ + S Q++ +I
Sbjct: 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148
Query: 321 MTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLES 380
+ IL L+ N + + ++ +NNL+ +
Sbjct: 149 VGLSFESVIL---WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 205
Query: 381 LDLSKNRLTFL 391
LD+S+ R+ L
Sbjct: 206 LDISRTRIHSL 216
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (83), Expect = 0.003
Identities = 25/225 (11%), Positives = 54/225 (24%), Gaps = 9/225 (4%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSM 98
+IP L L + LE+++ + N
Sbjct: 22 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
+ + + N + LP + ++ L ++
Sbjct: 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139
Query: 159 LSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP 218
+ S +L L F + +N L+
Sbjct: 140 IHTIE-----RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194
Query: 219 KSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL--IQQLP 261
+ I D+ +I+ L +L +L +++LP
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP 239
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 4e-07
Identities = 37/264 (14%), Positives = 75/264 (28%), Gaps = 11/264 (4%)
Query: 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185
+ + + N ++ + +L +L L N L+ + +
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 186 GKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWL 245
P TF L + L LQ P A L+ L++N +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 246 GSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYF 305
L L L L + +P + F+ +++ L + +
Sbjct: 150 RDLGNLTHLFLHG---NRISSVPERAFRGLHSLDR----LLLHQNRVAHVHPHAFRDLGR 202
Query: 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365
Y + L+ + L+ N + + + LQ +S+ +
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVP 261
Query: 366 GHIPSCLGSLTNLESLDLSKNRLT 389
+P L + L+ N L
Sbjct: 262 CSLPQ---RLAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 32/217 (14%), Positives = 57/217 (26%), Gaps = 20/217 (9%)
Query: 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSM 98
+P + Q + L N AS + +L L + + + +
Sbjct: 25 AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 99 KNFSY-----------------LNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLT 141
+ L + R +++ + N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 142 GEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS 201
+L +L L L N +S + L L L P F +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 202 DLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238
L + L N L ++LA L+ L +N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 30/241 (12%), Positives = 57/241 (23%), Gaps = 40/241 (16%)
Query: 201 SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260
+ + + L N + S C L I + + L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTIL--WLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 261 PCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQM 320
+ + F + + + E + +Y D ++ +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 321 MTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLT---- 376
L + L NR + L L L L N + P L
Sbjct: 150 RDLGN----LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 377 --------------------NLESLDLSKNRL----------TFLEFFNATHNNLTGPIP 406
L+ L L+ N +L+ F + + + +P
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265
Query: 407 Q 407
Q
Sbjct: 266 Q 266
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 9/193 (4%)
Query: 199 NGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ 258
LQ +P + + L N+I+ + L IL L
Sbjct: 9 YNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHS 65
Query: 259 QLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEG 318
+ + + ++++QLR ++ + +
Sbjct: 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125
Query: 319 QMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNL 378
+ + L+ + L N + +L L L L N + L +L
Sbjct: 126 RGLAA------LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179
Query: 379 ESLDLSKNRLTFL 391
+ L L +NR+ +
Sbjct: 180 DRLLLHQNRVAHV 192
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 135 ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP 194
++ +LT + + L + LDLS N L + + LQ +
Sbjct: 5 LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNALENV 58
Query: 195 DTFMNGSDLRMVDLSHNLLQG-KIPKSLANCAVLEISDLRNNQI 237
D N L+ + L +N LQ + L +C L + +L+ N +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 51 QWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY 110
+ L LA + + + L + LD + N L + L +
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLD------LSHN----RLRALPPALAALRCLEVL 48
Query: 111 FPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGE 167
+ V L L + + + L +L+L N+L E
Sbjct: 49 QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (101), Expect = 3e-05
Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 26/175 (14%)
Query: 83 MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTG 142
++ + L +I + + +
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359
Query: 143 EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202
S L VL L+D ++S L T +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA---------------------TLLANHS 398
Query: 203 LRMVDLSHNLLQGKIPKSLA-----NCAVLEISDLRNNQINDTFPIWLGSLLELN 252
LR +DLS+N L L +LE L + ++ L +L +
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 6e-05
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 330 LKGIILSSNRF-DGEMPTSIANLKGLQVLGLASNNLQG----HIPSCLGSLTNLESLDLS 384
++ + + D + L+ QV+ L L I S L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 385 KNRLT 389
N L
Sbjct: 64 SNELG 68
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.002
Identities = 36/364 (9%), Positives = 83/364 (22%), Gaps = 14/364 (3%)
Query: 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSL-----SSLERLDTFPPMKIHGNIPKWLL 94
I +L L L+L N + +++L
Sbjct: 47 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 106
Query: 95 NPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSL 154
+ + L +
Sbjct: 107 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 166
Query: 155 YVLDLSDNNLSGELLQCLGN--FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL 212
D + +S + G GL Q + + + ++
Sbjct: 167 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 226
Query: 213 LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYF 272
++ + +++L ++ + + + E I C + +
Sbjct: 227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 286
Query: 273 QCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKG 332
+ A R + L + ++ + + +
Sbjct: 287 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 346
Query: 333 IILSSNRFDGEMPTSIANLKG---LQVLGLASNNLQG----HIPSCLGSLTNLESLDLSK 385
I + G + L+VL LA ++ + + L + +L LDLS
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 406
Query: 386 NRLT 389
N L
Sbjct: 407 NCLG 410
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.004
Identities = 21/181 (11%), Positives = 40/181 (22%), Gaps = 9/181 (4%)
Query: 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNF----FGTTPDTFMNGSDLRMVDL 208
+ LD+ LS L V+ L L ++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 209 SHNLLQGKIPKSLA-----NCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263
N L + ++ L+N + L S L + L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 264 MGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH 323
+ C + + +E S S + + +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 324 D 324
+
Sbjct: 183 E 183
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 33/257 (12%), Positives = 69/257 (26%), Gaps = 30/257 (11%)
Query: 138 NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTF 197
+ + + + + +DLS++ + L +
Sbjct: 32 RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI------------------------L 67
Query: 198 MNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR--NNQINDTFPIWLGSLLELNILV 255
S L+ + L L I +LA + L +L + L S L+ L
Sbjct: 68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127
Query: 256 LIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMS 315
L + + N S R D S ++
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187
Query: 316 NEGQMMTHDKIPDILKGIILSS-NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGS 374
+ + L+ + LS E + + L+ L + G + +
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247
Query: 375 LTNLESLDLSKNRLTFL 391
L + L ++ + T +
Sbjct: 248 LPH---LQINCSHFTTI 261
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 4/221 (1%)
Query: 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRE-LPASIGSLSSLERLDTFPPMKIHGNIPKWLL 94
F Q + ++Q +DL+ + L + S L+ L +++ I L
Sbjct: 34 FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS-LEGLRLSDPIVNTLA 92
Query: 95 -NPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSS 153
N ++ + S + + ++ ++ + ++
Sbjct: 93 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 152
Query: 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH-NL 212
L + N +L + + + F + L+ + LS
Sbjct: 153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 212
Query: 213 LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNI 253
+ + L L+ + + T + +L L I
Sbjct: 213 IIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 8e-05
Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 28/236 (11%)
Query: 150 NLSSLYVLDLSDNNLSGELLQC-LGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208
L++ + +N++ + Q L ++ LS G TT + ++L ++L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDG----ITTLSAFGTGV--TTIEGVQYLNNLIGLEL 70
Query: 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLP 268
N + P + Q +
Sbjct: 71 KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGL--------------QSIKTLDLTS 116
Query: 269 SKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPD 328
++ +N L N +++ + + +T
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI---GNAQVSDLTPLANLS 173
Query: 329 ILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS 384
L + N+ P +A+L L + L +N + P L + +NL + L+
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 9/198 (4%)
Query: 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPI-WLGSLLELNILVLIQQLPCFMG 265
+ + + + A+ + + + +L +L+ L + +
Sbjct: 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK 82
Query: 266 KLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSN----EGQMM 321
L + N S + +++ + + + Q+
Sbjct: 83 NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142
Query: 322 THDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESL 381
+ + LS T +ANL L L N + P L SL NL +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEV 200
Query: 382 DLSKNRLTFLEFFNATHN 399
L N+++ + T N
Sbjct: 201 HLKNNQISDVSPLANTSN 218
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 43/317 (13%), Positives = 83/317 (26%), Gaps = 28/317 (8%)
Query: 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158
+ L L+ + LP L + + S N+LT E+P +L SL V +
Sbjct: 38 RQAHELELNNLGL-------SSLP--ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDN 87
Query: 159 LSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL-----L 213
+ LS + L ++ + L+ +
Sbjct: 88 NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147
Query: 214 QGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQ 273
+ L L N + L +I+ L +
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207
Query: 274 CWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGI 333
A + + + + +++ L
Sbjct: 208 TIYADNNLLKTLPDLPPSL--EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265
Query: 334 ILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTF--- 390
+ N E+ + L+ L +++N L +P+ LE L S N L
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPE 321
Query: 391 ----LEFFNATHNNLTG 403
L+ + +N L
Sbjct: 322 LPQNLKQLHVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 40/299 (13%), Positives = 72/299 (24%), Gaps = 13/299 (4%)
Query: 94 LNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST-KIRHYLISKNNLTGEIPSWICNLS 152
L + L S N + P L + ++ L S
Sbjct: 53 LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 112
Query: 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL 212
+ + S + L G + +
Sbjct: 113 LPELQNSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLEELPELQNLPFLTAIYA 169
Query: 213 LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYF 272
+ K LE NN + + + L +
Sbjct: 170 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 229
Query: 273 QCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKG 332
+ + + S F P N Y + S+ D P L+
Sbjct: 230 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS-LEE 288
Query: 333 IILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFL 391
+ +S+N+ E+P L+ L + N+L +P NL+ L + N L
Sbjct: 289 LNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLREF 339
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.4 bits (90), Expect = 6e-04
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 72 SSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIR 131
L + + L +YL + +++
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263
Query: 132 HYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191
L N + EI S SL L++S+N L L L L N
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASF-NHLA 317
Query: 192 TTPDTFMNGSDLRMVDLSHNLLQG--KIPKSLAN 223
P+ N L+ + + +N L+ IP+S+ +
Sbjct: 318 EVPELPQN---LKQLHVEYNPLREFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.9 bits (86), Expect = 0.002
Identities = 56/335 (16%), Positives = 91/335 (27%), Gaps = 27/335 (8%)
Query: 48 NQLQWLDLAFNNFLRELPASIGSLSSLE----RLDTFPPMKIHGNIPKWLLNPSMKNFSY 103
Q L+L N L LP L SL L P ++
Sbjct: 38 RQAHELELN-NLGLSSLPELPPHLESLVASCNSLTELPE--------------LPQSLKS 82
Query: 104 LNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNN 163
L + N P +L + +S L N + + N S + DL +
Sbjct: 83 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142
Query: 164 LSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLAN 223
L L + + L + + + L N
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202
Query: 224 CAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283
L NN + + + LP L +
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262
Query: 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE 343
Y N S+ P + + +SN +++ +P L+ +I S N E
Sbjct: 263 PPNLYYLNASSNEIRSLCD--LPPSLEELNVSN-NKLIELPALPPRLERLIASFNHL-AE 318
Query: 344 MPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNL 378
+P NLK L + N L+ P S+ +L
Sbjct: 319 VPELPQNLK---QLHVEYNPLRE-FPDIPESVEDL 349
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 35/286 (12%), Positives = 75/286 (26%), Gaps = 23/286 (8%)
Query: 127 STKIRHYLISKNNLTGE----IPSWICNLSSLYVLDLSDNNLS------GELLQCLGNFS 176
++ ++S N + E + I + L + + SD E L+ L
Sbjct: 30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 89
Query: 177 GGLSVL--------SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLE 228
L + + + ++ L K L
Sbjct: 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 149
Query: 229 ISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288
++ N I + LE + + L + L
Sbjct: 150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 209
Query: 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSI 348
+ D + S ++ + + + + ++ + S
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 269
Query: 349 ANLKGLQVLGLASNNLQGHIPSCLGS-----LTNLESLDLSKNRLT 389
GLQ L L N ++ L + + +L L+L+ NR +
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 11/193 (5%)
Query: 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW-LGSLLELN 252
DT ++ L + + S + + I + L +L ++N
Sbjct: 13 TDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQIN 68
Query: 253 ILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYS- 311
+ L N + A+ + L + N +
Sbjct: 69 FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128
Query: 312 ---ITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHI 368
+ + + + L+ + +ANL L+ L ++SN +
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-- 186
Query: 369 PSCLGSLTNLESL 381
S L LTNLESL
Sbjct: 187 ISVLAKLTNLESL 199
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.001
Identities = 19/182 (10%), Positives = 47/182 (25%), Gaps = 21/182 (11%)
Query: 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPC 262
+ + +++ ++ + + L N++ D P+ L
Sbjct: 48 IDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLA--------------NLKN 91
Query: 263 FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMT 322
+ + + + +
Sbjct: 92 LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV 151
Query: 323 HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382
++ + + + D +A L LQ L L+ N++ L L NL+ L+
Sbjct: 152 LSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLE 206
Query: 383 LS 384
L
Sbjct: 207 LF 208
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Query: 136 SKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195
+++ + + +L L + + L G L L++ PD
Sbjct: 16 TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74
Query: 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILV 255
F L ++LS N L+ K++ ++ E+ N WL E +
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134
Query: 256 LI-QQLPC 262
+ Q+L C
Sbjct: 135 VPEQKLQC 142
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.003
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLEFFNATHN 399
E N + L L + I + +L +++D S N + L+ F
Sbjct: 9 EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.8 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.79 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.78 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.77 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.73 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.7 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.58 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.53 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.51 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.49 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.43 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.35 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.35 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.34 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.28 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.57 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.5 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.78 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.62 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.24 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.62 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=5e-31 Score=249.91 Aligned_cols=259 Identities=31% Similarity=0.498 Sum_probs=137.4
Q ss_pred CCCEeeCcCCCCCC--CCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 49 QLQWLDLAFNNFLR--ELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
+++.|+|++|.+.+ .+|..++++++|++|+|++.|++.|.+|.++.+ +++|++|+|++|++..
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~--L~~L~~L~Ls~N~l~~------------- 115 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHTNVSG------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSEEEEEEECCEE-------------
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc--ccccchhhhccccccc-------------
Confidence 46666666666655 355666666666666665125666666666666 5666666665555544
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCc-cE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL-RM 205 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~ 205 (486)
..+..+..+.+|+.+++++|.+.+.+|..+..++. ++.+++++|.+.+.+|..+..+..+ +.
T Consensus 116 ----------------~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~-L~~l~l~~n~l~~~ip~~~~~l~~l~~~ 178 (313)
T d1ogqa_ 116 ----------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp ----------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred ----------------cccccccchhhhcccccccccccccCchhhccCcc-cceeeccccccccccccccccccccccc
Confidence 44444444444444444444444444444444444 4455555555444444444444433 45
Q ss_pred EECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcccccccccccc
Q 048443 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQ 285 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~ 285 (486)
+++++|++++..|..+..+..+ .++++.+...+..|..+..+++
T Consensus 179 l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~----------------------------------- 222 (313)
T d1ogqa_ 179 MTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKN----------------------------------- 222 (313)
T ss_dssp EECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSC-----------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccc-----------------------------------
Confidence 5555555555555544444332 4555555554444433332222
Q ss_pred chhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccC
Q 048443 286 LRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365 (486)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 365 (486)
++.+++++|.+.+.+| .+..+++|++|+|++|+++
T Consensus 223 --------------------------------------------l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~ 257 (313)
T d1ogqa_ 223 --------------------------------------------TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp --------------------------------------------CSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCE
T ss_pred --------------------------------------------cccccccccccccccc-ccccccccccccCccCeec
Confidence 3333344444443222 3445555666666666666
Q ss_pred ccCchhccCCCCCCEEeCCCCCCCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCCCCCCC
Q 048443 366 GHIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKEC 434 (486)
Q Consensus 366 ~~~~~~~~~l~~L~~L~Ls~N~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~~~~~C 434 (486)
|.+|+.|+++++|++|||+ +|+|+|.+|....+..++.+++.||+.+||.|++ .|
T Consensus 258 g~iP~~l~~L~~L~~L~Ls-------------~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 258 GTLPQGLTQLKFLHSLNVS-------------FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp ECCCGGGGGCTTCCEEECC-------------SSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccCChHHhCCCCCCEEECc-------------CCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence 5566656555555444444 3345555665555556666667777777877764 56
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=1.9e-29 Score=238.93 Aligned_cols=210 Identities=26% Similarity=0.364 Sum_probs=141.9
Q ss_pred hhhhhc-cCCcccc--cCCcCCCCCCCCCEeeCcC-CCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCC
Q 048443 26 FLDRLQ-RLSDFSG--QIPPSLGNLNQLQWLDLAF-NNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101 (486)
Q Consensus 26 ~l~~L~-~~n~~~~--~~p~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L 101 (486)
+++.|+ +++++.| .+|++++++++|++|+|++ |++.+.+|.+|+++++|++|+++ +|++.+..+..+.. +.+|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls-~N~l~~~~~~~~~~--~~~L 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDFLSQ--IKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGGGGG--CTTC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhc-cccccccccccccc--hhhh
Confidence 456666 7788887 5899999999999999997 88999999999999999999999 99999999998888 8888
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC-CEEECcCCcCcccccchhhhcCCCC
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL-YVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
+++++++|.+... +|..+. ++.++++++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+. .
T Consensus 128 ~~l~l~~N~~~~~------~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~--~ 199 (313)
T d1ogqa_ 128 VTLDFSYNALSGT------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--L 199 (313)
T ss_dssp CEEECCSSEEESC------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--C
T ss_pred ccccccccccccc------CchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 8888887766543 444444 5666666666666666666655555554 5566666666555555554443 3
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccC
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGS 247 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 247 (486)
..++++++...+.+|..+..+++++.+++++|.+++.+| .+..+++|++|++++|++++.+|.+++.
T Consensus 200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~ 266 (313)
T d1ogqa_ 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhC
Confidence 345555555555555555555555555555555554332 3445555555555555555444444433
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.7e-26 Score=216.26 Aligned_cols=201 Identities=21% Similarity=0.187 Sum_probs=155.2
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
.+|+.+. +++++|+|++|++..+.+.+|.++++|++|+++ +|.+....|..|.. +++|++|++++|+++.+|.
T Consensus 24 ~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~-~n~~~~i~~~~f~~--l~~L~~L~l~~n~l~~l~~-- 96 (305)
T d1xkua_ 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAP--LVKLERLYLSKNQLKELPE-- 96 (305)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTT--CTTCCEEECCSSCCSBCCS--
T ss_pred ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccc-cccccccchhhhhC--CCccCEecccCCccCcCcc--
Confidence 3566664 689999999999888777789999999999999 99999888889998 9999999999999988643
Q ss_pred CCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc--cccchhhhcCCCCcEEEccCccccccCCcc
Q 048443 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG--ELLQCLGNFSGGLSVLSLQGKNFFGTTPDT 196 (486)
Q Consensus 119 ~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 196 (486)
.+ ...++.|++++|.+.+..+..+.....+..++...|.... ..+..+..+.. |+.+++++|.+... +..
T Consensus 97 -----~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~-L~~l~l~~n~l~~l-~~~ 168 (305)
T d1xkua_ 97 -----KM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADTNITTI-PQG 168 (305)
T ss_dssp -----SC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CCEEECCSSCCCSC-CSS
T ss_pred -----ch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc-cCccccccCCcccc-Ccc
Confidence 21 4678899999999987666677788888889988876542 33445666666 88888888887653 332
Q ss_pred ccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEc
Q 048443 197 FMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256 (486)
Q Consensus 197 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 256 (486)
.+++|++|++++|..++..+.+|..++.+++|++++|.+.+..+.++..+++|++|++
T Consensus 169 --~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L 226 (305)
T d1xkua_ 169 --LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226 (305)
T ss_dssp --CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred --cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence 2467888888888888777778888888888888888887666655554444444433
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.1e-26 Score=213.44 Aligned_cols=231 Identities=18% Similarity=0.139 Sum_probs=181.2
Q ss_pred CCcccccCccccee-eeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 1 EKRCLCSELTRLTI-LLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 1 ~~~c~c~~l~~l~~-~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
|..|.|.+.+.+.+ |.+. +++ .+|..+. +.+++|+|++|+|..+.+.+|.++++|++|++
T Consensus 3 p~~C~C~~~~~~~v~c~~~----------------~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~l 63 (284)
T d1ozna_ 3 PGACVCYNEPKVTTSCPQQ----------------GLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWL 63 (284)
T ss_dssp CTTCEEECSSSCEEECCSS----------------CCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEcCCCCeEEEcCCC----------------CCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccc
Confidence 78999975554433 3222 222 3454444 56788999999888777778888889999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEcc-CCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEE
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLS-KNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVL 157 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls-~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 157 (486)
+ +|++....+..+.. +..++.++.. .|.++.+ .+..+. +++|++|++++|.+....+..+....+|+.+
T Consensus 64 s-~n~l~~i~~~~~~~--~~~~~~l~~~~~~~~~~l------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l 134 (284)
T d1ozna_ 64 H-SNVLARIDAAAFTG--LALLEQLDLSDNAQLRSV------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (284)
T ss_dssp C-SSCCCEECTTTTTT--CTTCCEEECCSCTTCCCC------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred c-cccccccccccccc--cccccccccccccccccc------cchhhcccccCCEEecCCcccccccccccchhcccchh
Confidence 8 88888888877777 8888888765 5566665 234455 7888888888888876666778888888899
Q ss_pred ECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcc
Q 048443 158 DLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237 (486)
Q Consensus 158 ~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 237 (486)
++++|.+++..+..|..... |+.|++++|++.+..+.+|.++++|+.+++++|.+++..|.+|..+++|++|++++|.+
T Consensus 135 ~l~~N~l~~i~~~~f~~~~~-L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i 213 (284)
T d1ozna_ 135 YLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (284)
T ss_dssp ECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred hhccccccccChhHhccccc-hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence 99998888666667777776 88999999888888888888888999999999988888888888888999999999998
Q ss_pred ccCCCccccCCCCCCEEEcCccC
Q 048443 238 NDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 238 ~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
.+..+.+|..+++|+.|++++|.
T Consensus 214 ~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 214 SALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccccccccccccCEEEecCCC
Confidence 88888888888888888888873
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=2.6e-25 Score=216.37 Aligned_cols=295 Identities=21% Similarity=0.240 Sum_probs=180.5
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
+++.|+. + +.+..+++|++|++++|++.+.. .|+++++|++|+++ +|.+.+..+ +.. +++|+.|++++|.+
T Consensus 52 ~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~-~n~i~~i~~--l~~--l~~L~~L~~~~~~~ 122 (384)
T d2omza2 52 DRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMN-NNQIADITP--LAN--LTNLTGLTLFNNQI 122 (384)
T ss_dssp CSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCC
T ss_pred CCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccc-ccccccccc--ccc--cccccccccccccc
Confidence 4444543 2 24566677777777777765543 26677777777777 676665432 445 67777777777766
Q ss_pred CCCCCCCCC-----------------------------------CCcccc-cCccCeeecccCcccccCCccccCCCCCC
Q 048443 112 PRFDQHPTV-----------------------------------LPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY 155 (486)
Q Consensus 112 ~~~~~l~~l-----------------------------------~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 155 (486)
+.++..... ....+. ...........|.. .....+..+++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 200 (384)
T d2omza2 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLE 200 (384)
T ss_dssp CCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC--CCCGGGGGCTTCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc--ccccccccccccc
Confidence 643321000 000000 11111111222221 1234566778899
Q ss_pred EEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCC
Q 048443 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNN 235 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 235 (486)
.+++++|.+++..| +...+. |++|++++|.++.. ..+..+++|+.|++++|.+++.. .+..+++|++|++++|
T Consensus 201 ~l~l~~n~i~~~~~--~~~~~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~ 273 (384)
T d2omza2 201 SLIATNNQISDITP--LGILTN-LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGAN 273 (384)
T ss_dssp EEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSS
T ss_pred eeeccCCccCCCCc--ccccCC-CCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCc
Confidence 99999999886544 344555 99999999988753 35778899999999999988543 3778899999999999
Q ss_pred ccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEee
Q 048443 236 QINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMS 315 (486)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (486)
.+.+.. .+..++.++.+.+..+. ...++. +..++.++.++++++.
T Consensus 274 ~l~~~~--~~~~~~~l~~l~~~~n~---l~~~~~--~~~~~~l~~L~ls~n~---------------------------- 318 (384)
T d2omza2 274 QISNIS--PLAGLTALTNLELNENQ---LEDISP--ISNLKNLTYLTLYFNN---------------------------- 318 (384)
T ss_dssp CCCCCG--GGTTCTTCSEEECCSSC---CSCCGG--GGGCTTCSEEECCSSC----------------------------
T ss_pred ccCCCC--ccccccccccccccccc---cccccc--cchhcccCeEECCCCC----------------------------
Confidence 987543 37778888888887762 222222 4444455444444441
Q ss_pred cCCCccc-cCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 316 NEGQMMT-HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 316 ~~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
+... ....+++|++|++++|+++ .++ .+.++++|++|++++|++++..| +.++++|++|+|++|
T Consensus 319 ---l~~l~~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 319 ---ISDISPVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp ---CSCCGGGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ---CCCCcccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 1111 0122456777777777776 333 46677777777777777775443 666777777777766
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=2.6e-25 Score=216.35 Aligned_cols=303 Identities=21% Similarity=0.238 Sum_probs=189.1
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+++++.++ ...+.+|++|++++++|... +.+..+++|++|+++ +|++++..| +.+ +++|++|++++|++
T Consensus 30 ~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls-~N~l~~l~~--l~~--L~~L~~L~L~~n~i 100 (384)
T d2omza2 30 GKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS-NNQLTDITP--LKN--LTKLVDILMNNNQI 100 (384)
T ss_dssp TCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCC
T ss_pred CCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCc-CCcCCCCcc--ccC--Cccccccccccccc
Confidence 5566777665 35678999999999998754 468889999999999 999997543 777 99999999999999
Q ss_pred CCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc-------------------------
Q 048443 112 PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG------------------------- 166 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~------------------------- 166 (486)
..+++ ...+++|+.|+++++.+++..+ ......+..+....|.+..
T Consensus 101 ~~i~~-------l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (384)
T d2omza2 101 ADITP-------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 171 (384)
T ss_dssp CCCGG-------GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGG
T ss_pred ccccc-------cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 87632 2227899999999998874322 2333444444444443321
Q ss_pred ----------------cccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEE
Q 048443 167 ----------------ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEIS 230 (486)
Q Consensus 167 ----------------~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 230 (486)
.....+..++. ++.+++++|.+++..| +...++|++|++++|.++. + ..+..+++|+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 246 (384)
T d2omza2 172 ANLTTLERLDISSNKVSDISVLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDL 246 (384)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred ccccccccccccccccccccccccccc-cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchh
Confidence 11223334443 5666666666554433 2334556666666666552 2 235556666666
Q ss_pred EccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcc
Q 048443 231 DLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDY 310 (486)
Q Consensus 231 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (486)
++++|.+++..+ +..+++|+.|+++++ ....++. +..+..+..+....
T Consensus 247 ~l~~n~l~~~~~--~~~~~~L~~L~l~~~---~l~~~~~--~~~~~~l~~l~~~~------------------------- 294 (384)
T d2omza2 247 DLANNQISNLAP--LSGLTKLTELKLGAN---QISNISP--LAGLTALTNLELNE------------------------- 294 (384)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSS---CCCCCGG--GTTCTTCSEEECCS-------------------------
T ss_pred ccccCccCCCCc--ccccccCCEeeccCc---ccCCCCc--cccccccccccccc-------------------------
Confidence 666666654322 555566666666554 1222221 22333333333332
Q ss_pred eEEeecCCCccc-cCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC--
Q 048443 311 SITMSNEGQMMT-HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-- 387 (486)
Q Consensus 311 ~l~~~~~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-- 387 (486)
+.+... ....++.++.|++++|++++. + .+..+++|++|++++|++++ ++ .+.++++|++|++++|+
T Consensus 295 ------n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~ 364 (384)
T d2omza2 295 ------NQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS 364 (384)
T ss_dssp ------SCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred ------cccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence 222211 123356788888888888753 3 27778888888888888873 44 57788888888888877
Q ss_pred -------CCCCCEEeccCC
Q 048443 388 -------LTFLEFFNATHN 399 (486)
Q Consensus 388 -------l~~L~~L~ls~N 399 (486)
+++|+.|++++|
T Consensus 365 ~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 365 DLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp BCGGGTTCTTCSEEECCCE
T ss_pred CChhhccCCCCCEeeCCCC
Confidence 345556666555
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.6e-24 Score=199.49 Aligned_cols=204 Identities=20% Similarity=0.143 Sum_probs=163.1
Q ss_pred CcccccCcccc--eeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 2 KRCLCSELTRL--TILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 2 ~~c~c~~l~~l--~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
.+|.|++.+.. +.| ++++++ .+|+.+. +++++|+|++|++.+..+.+|.++++|++|+|
T Consensus 2 ~~C~~~~~~~~~~v~C----------------~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L 62 (266)
T d1p9ag_ 2 PICEVSKVASHLEVNC----------------DKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62 (266)
T ss_dssp CSSEEECSTTCCEEEC----------------TTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEEC
T ss_pred CccEEcccCCCeEEEc----------------cCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccc
Confidence 58889877655 233 344555 3666665 57999999999988887788999999999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEE
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 158 (486)
+ +|+++...+ +.. +++|++|++++|+++.++ ..+. +++|++|++++|.+.+..+..+..+.++++|+
T Consensus 63 ~-~N~l~~l~~--~~~--l~~L~~L~Ls~N~l~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 130 (266)
T d1p9ag_ 63 D-RAELTKLQV--DGT--LPVLGTLDLSHNQLQSLP-------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (266)
T ss_dssp T-TSCCCEEEC--CSC--CTTCCEEECCSSCCSSCC-------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred c-ccccccccc--ccc--cccccccccccccccccc-------cccccccccccccccccccceeecccccccccccccc
Confidence 9 999885432 345 899999999999988753 3344 78899999999998877777888888999999
Q ss_pred CcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 159 LSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 159 Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+++|.++...+..+..++. ++.+++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 131 l~~n~l~~l~~~~~~~l~~-l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 131 LKGNELKTLPPGLLTPTPK-LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTSCCCCCCTTTTTTCTT-CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccceecccccccccc-chhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 9999888666666666776 888999999888888888888888889999988888 67777778888888888888775
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=6.2e-24 Score=199.88 Aligned_cols=248 Identities=20% Similarity=0.204 Sum_probs=199.3
Q ss_pred CCcccccCcccceeeeehhcc----CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTILLFYLMT----SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~----~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
|.+|.|.. +.++ |.+...+ ..++.++.|+ ++|+++...+.+|.++++|++|++++|.+....|..|.++++|+
T Consensus 5 p~~c~c~~-~~~~-C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~ 82 (305)
T d1xkua_ 5 PFRCQCHL-RVVQ-CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82 (305)
T ss_dssp CTTCEEET-TEEE-CTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCCEecC-CEEE-ecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccC
Confidence 78999953 4444 3333232 3456788888 88888776677899999999999999999998899999999999
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCccc--ccCCccccCCC
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLT--GEIPSWICNLS 152 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~--~~~~~~~~~l~ 152 (486)
+|+++ +|+++. +|..+ ...++.|++++|.+..++. ..+. ...+..++...|... ...+..+..++
T Consensus 83 ~L~l~-~n~l~~-l~~~~----~~~l~~L~~~~n~l~~l~~------~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~ 150 (305)
T d1xkua_ 83 RLYLS-KNQLKE-LPEKM----PKTLQELRVHENEITKVRK------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150 (305)
T ss_dssp EEECC-SSCCSB-CCSSC----CTTCCEEECCSSCCCBBCH------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred Eeccc-CCccCc-Cccch----hhhhhhhhccccchhhhhh------hhhhccccccccccccccccccCCCcccccccc
Confidence 99999 999985 55544 6789999999999987632 2233 567778888887544 34566788999
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEc
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL 232 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 232 (486)
+|+.+++++|.+. .+|..+ .+ +|+.|++++|.+.+..+..|.+++.++.|++++|.+++..+.++.++++|++|+|
T Consensus 151 ~L~~l~l~~n~l~-~l~~~~--~~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L 226 (305)
T d1xkua_ 151 KLSYIRIADTNIT-TIPQGL--PP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226 (305)
T ss_dssp TCCEEECCSSCCC-SCCSSC--CT-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred ccCccccccCCcc-ccCccc--CC-ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence 9999999999998 455443 34 4999999999999999999999999999999999999888889999999999999
Q ss_pred cCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 233 RNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 233 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
++|.++ .+|.++..+++|+.|++++| .+..++..
T Consensus 227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N---~i~~i~~~ 260 (305)
T d1xkua_ 227 NNNKLV-KVPGGLADHKYIQVVYLHNN---NISAIGSN 260 (305)
T ss_dssp CSSCCS-SCCTTTTTCSSCCEEECCSS---CCCCCCTT
T ss_pred cccccc-ccccccccccCCCEEECCCC---ccCccChh
Confidence 999998 45778888888888888887 34444443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.3e-24 Score=197.18 Aligned_cols=209 Identities=19% Similarity=0.133 Sum_probs=188.1
Q ss_pred CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCC
Q 048443 22 SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100 (486)
Q Consensus 22 ~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~ 100 (486)
..++.++.|+ ++|+|++..+.+|.++++|++|++++|++..+.+..+..+..++.++....+.++...+..|.+ +++
T Consensus 29 ~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~--l~~ 106 (284)
T d1ozna_ 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG--LGR 106 (284)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT--CTT
T ss_pred CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcc--ccc
Confidence 4566788888 8899987777889999999999999999999999999999999999876478888888889998 999
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
|++|++++|.+..++ +..+. ..+|+++++++|++++..+..|..+++|+.|++++|++++..+.+|..++. |
T Consensus 107 L~~L~l~~n~~~~~~------~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~-L 179 (284)
T d1ozna_ 107 LHTLHLDRCGLQELG------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-L 179 (284)
T ss_dssp CCEEECTTSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-C
T ss_pred CCEEecCCccccccc------ccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccc-c
Confidence 999999999998763 33444 789999999999999777788999999999999999999877888888887 9
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+.+++++|++++..|..|..+++|++|++++|.+.+..+.+|+.+++|++|++++|++..
T Consensus 180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 999999999999999999999999999999999998888899999999999999999874
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.6e-23 Score=188.61 Aligned_cols=200 Identities=20% Similarity=0.164 Sum_probs=175.2
Q ss_pred CCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcc
Q 048443 45 GNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT 124 (486)
Q Consensus 45 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~ 124 (486)
.+...+.++|.++++++. +|..+. +++++|+|+ +|+|++..+.+|.+ +++|++|+|++|+|+.+|. .
T Consensus 7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls-~N~i~~l~~~~f~~--l~~L~~L~L~~N~l~~l~~-------~ 73 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLS-ENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQV-------D 73 (266)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECT-TSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEEC-------C
T ss_pred cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECc-CCcCCCcCHHHhhc--ccccccccccccccccccc-------c
Confidence 445667788999999764 576554 579999999 99999888888988 9999999999999998643 2
Q ss_pred cccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCcc
Q 048443 125 TLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204 (486)
Q Consensus 125 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 204 (486)
..+++|++|++++|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.. +++|++++|.+....+..+..+++++
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-l~~L~l~~n~l~~l~~~~~~~l~~l~ 151 (266)
T d1p9ag_ 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLE 151 (266)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccceeeccccccccc-cccccccccccceeccccccccccch
Confidence 22789999999999998 56778999999999999999999777777777776 99999999999988888899999999
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|++++|.
T Consensus 152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred hcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence 9999999999887888999999999999999998 678888889999999999973
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=5.4e-18 Score=161.78 Aligned_cols=177 Identities=20% Similarity=0.202 Sum_probs=115.1
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccccc
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS 127 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~ 127 (486)
.++++|||++|+++ .+|+. .++|++|+++ +|+|+ .+|+. +.+|+.|++++|.++.++. + .
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls-~N~l~-~lp~~-----~~~L~~L~l~~n~l~~l~~----l-----p 97 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVAS-CNSLT-ELPEL-----PQSLKSLLVDNNNLKALSD----L-----P 97 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECC-SSCCS-SCCCC-----CTTCCEEECCSSCCSCCCS----C-----C
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECC-CCCCc-ccccc-----hhhhhhhhhhhcccchhhh----h-----c
Confidence 36888888888865 45643 4678888888 88888 45643 5678888888888887654 2 2
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
+.|++|++++|.++ .+|. ++.+++|++|++++|.+.. .+... .. +..+.+.++.... ...+..++.++.++
T Consensus 98 ~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~~---~~-l~~l~~~~~~~~~--~~~l~~l~~l~~L~ 168 (353)
T d1jl5a_ 98 PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLP---PS-LEFIAAGNNQLEE--LPELQNLPFLTAIY 168 (353)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCCC---TT-CCEEECCSSCCSS--CCCCTTCTTCCEEE
T ss_pred cccccccccccccc-cccc-hhhhccceeeccccccccc-ccccc---cc-ccchhhccccccc--cccccccccceecc
Confidence 46888899988888 5554 5778888899988888763 33222 22 6677776655532 34466677788888
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+++|.... .+. .....+.+...++.+. .. ..+..++.|+.++++++
T Consensus 169 l~~n~~~~-~~~---~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n 214 (353)
T d1jl5a_ 169 ADNNSLKK-LPD---LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNN 214 (353)
T ss_dssp CCSSCCSS-CCC---CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSS
T ss_pred cccccccc-ccc---cccccccccccccccc-cc-ccccccccccccccccc
Confidence 88877652 222 1223345555554443 22 22455666667766665
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.80 E-value=5.7e-19 Score=157.93 Aligned_cols=200 Identities=24% Similarity=0.253 Sum_probs=161.0
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+.+++.+ .++.+.+|+.|++++|++... +.+..+++|++|+++ +|.+++..| +.. +++|+++++++|.+
T Consensus 27 ~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls-~n~i~~~~~--l~~--l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 27 GKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK-DNQITDLAP--LKN--LTKITELELSGNPL 97 (227)
T ss_dssp TCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECC-SSCCCCCGG--GTT--CCSCCEEECCSCCC
T ss_pred CCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecC-Cceeecccc--ccc--cccccccccccccc
Confidence 556666655 356788999999999998764 358899999999999 999986544 666 99999999999999
Q ss_pred CCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc
Q 048443 112 PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
+.++. ...+++|++++++++...+. ..+...+.++.+.++++.+... ..+...+. |+.|++++|.+.+
T Consensus 98 ~~i~~-------l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-L~~L~l~~n~~~~ 165 (227)
T d1h6ua2 98 KNVSA-------IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTN-LQYLSIGNAQVSD 165 (227)
T ss_dssp SCCGG-------GTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT-CCEEECCSSCCCC
T ss_pred ccccc-------cccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccc-ccccccccccccc
Confidence 87532 22278999999999988743 3467788999999999988743 34666776 9999999999865
Q ss_pred cCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCc
Q 048443 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 258 (486)
.. .+.++++|++|++++|++++ ++ .++++++|++|++++|++++..| +..+++|+.|++++
T Consensus 166 ~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 166 LT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (227)
T ss_dssp CG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred ch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence 43 47889999999999999985 33 38889999999999999986543 78899999998864
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.8e-19 Score=163.03 Aligned_cols=200 Identities=14% Similarity=0.065 Sum_probs=120.7
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccC-CchhccccCCCCcEEEccC-CCCCCCCCCCCCCCccc
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNI-PKWLLNPSMKNFSYLNLSK-NYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~-p~~~~~~~l~~L~~L~Ls~-N~l~~~~~l~~l~p~~~ 125 (486)
+++++|++++|++..+.+.+|.++++|++|+++ +|.+...+ +.+|.. +++++++++.. |.+..+ .+..+
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls-~n~~~~~i~~~~f~~--l~~l~~l~~~~~n~l~~~------~~~~~ 99 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSN--LPKLHEIRIEKANNLLYI------NPEAF 99 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEE-SCTTCCEECSSSEES--CTTCCEEEEECCTTCCEE------CTTSE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhc-cccccceeecccccc--cccccccccccccccccc------ccccc
Confidence 356777777777665555567777777777777 66665443 334555 67777776553 455443 22333
Q ss_pred c-cCccCeeecccCcccccCCc-cccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCc
Q 048443 126 L-STKIRHYLISKNNLTGEIPS-WICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 203 (486)
. +++|+++++++|+++...+. .+..+..++.+..+++.+....+..+..++..++.+++++|+++...+..|.. .++
T Consensus 100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l 178 (242)
T d1xwdc1 100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQL 178 (242)
T ss_dssp ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCE
T ss_pred cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-hhh
Confidence 3 66777777777776632221 23345555555666666664444555555434777777777777655555443 444
Q ss_pred cE-EECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcC
Q 048443 204 RM-VDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI 257 (486)
Q Consensus 204 ~~-L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 257 (486)
++ +++++|+++...+..|.++++|++|++++|+++...+..|..++.|+.+++.
T Consensus 179 ~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred hccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 33 4566677774444557777888888888888775555566666666655543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.78 E-value=9e-17 Score=153.14 Aligned_cols=288 Identities=19% Similarity=0.180 Sum_probs=177.6
Q ss_pred CCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCC
Q 048443 72 SSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNL 151 (486)
Q Consensus 72 ~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 151 (486)
.++++|||+ ++.++ .+|+. +++|++|++++|+|+++|. . ..+|++|++++|+++ .++.. .
T Consensus 38 ~~l~~LdLs-~~~L~-~lp~~-----~~~L~~L~Ls~N~l~~lp~-------~--~~~L~~L~l~~n~l~-~l~~l---p 97 (353)
T d1jl5a_ 38 RQAHELELN-NLGLS-SLPEL-----PPHLESLVASCNSLTELPE-------L--PQSLKSLLVDNNNLK-ALSDL---P 97 (353)
T ss_dssp HTCSEEECT-TSCCS-CCCSC-----CTTCSEEECCSSCCSSCCC-------C--CTTCCEEECCSSCCS-CCCSC---C
T ss_pred cCCCEEEeC-CCCCC-CCCCC-----CCCCCEEECCCCCCccccc-------c--hhhhhhhhhhhcccc-hhhhh---c
Confidence 468999999 99988 46753 6789999999999998654 2 368999999999988 44431 2
Q ss_pred CCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEE
Q 048443 152 SSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISD 231 (486)
Q Consensus 152 ~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 231 (486)
+.|++|++++|.+. .+|. ++.+.. |+.|++++|.+..... ....+..+.+..+... ....+..++.++.++
T Consensus 98 ~~L~~L~L~~n~l~-~lp~-~~~l~~-L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~ 168 (353)
T d1jl5a_ 98 PLLEYLGVSNNQLE-KLPE-LQNSSF-LKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIY 168 (353)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTT-CCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEE
T ss_pred cccccccccccccc-cccc-hhhhcc-ceeecccccccccccc----ccccccchhhcccccc--ccccccccccceecc
Confidence 46999999999998 4554 566776 9999999998864432 2456778888777664 344577889999999
Q ss_pred ccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccc--c----cccccccc---
Q 048443 232 LRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFL--S----SYFSFDFY--- 302 (486)
Q Consensus 232 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~--~----~~~~~~~~--- 302 (486)
+++|.+..... .....+.+..... ....+|. +..++.++.++++++....... . ........
T Consensus 169 l~~n~~~~~~~----~~~~~~~l~~~~~---~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (353)
T d1jl5a_ 169 ADNNSLKKLPD----LPLSLESIVAGNN---ILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL 239 (353)
T ss_dssp CCSSCCSSCCC----CCTTCCEEECCSS---CCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCC
T ss_pred ccccccccccc----ccccccccccccc---ccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 99998764322 1223445555553 3333443 4556777777777653211000 0 00000000
Q ss_pred ccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEe
Q 048443 303 RYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382 (486)
Q Consensus 303 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 382 (486)
...+..+...+...+.... ....+......++..+.+.+ ....+++|++|+|++|+|+ .+|. .+++|+.|+
T Consensus 240 ~~~~~~l~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~ 310 (353)
T d1jl5a_ 240 PELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLI 310 (353)
T ss_dssp CCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred ccccccccccccccccccc-cccccchhcccccccCcccc----ccccCCCCCEEECCCCccC-cccc---ccCCCCEEE
Confidence 0111111222221111110 11112333444444444442 1233577888888888888 5554 356788888
Q ss_pred CCCCC-------CCCCCEEeccCCccccCCCC
Q 048443 383 LSKNR-------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 383 Ls~N~-------l~~L~~L~ls~N~l~~~~p~ 407 (486)
+++|+ +++|++|++++|+++ .+|.
T Consensus 311 L~~N~L~~l~~~~~~L~~L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 311 ASFNHLAEVPELPQNLKQLHVEYNPLR-EFPD 341 (353)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred CCCCcCCccccccCCCCEEECcCCcCC-CCCc
Confidence 88887 346788888888887 4554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.77 E-value=5e-19 Score=153.85 Aligned_cols=178 Identities=20% Similarity=0.242 Sum_probs=128.8
Q ss_pred CCcccccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCC-CCcccccCCCCCCeecc
Q 048443 1 EKRCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLR-ELPASIGSLSSLERLDT 79 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~L 79 (486)
|..|.|+. +.++. ++++++ .+|+.+. +++++|+|++|+|.. ..+..|.++++|++|++
T Consensus 3 P~~C~C~~-~~v~C-----------------s~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L 61 (192)
T d1w8aa_ 3 PAMCHCEG-TTVDC-----------------TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61 (192)
T ss_dssp CTTSEEET-TEEEC-----------------TTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEEC
T ss_pred CCCCEEcC-CEEEE-----------------eCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeec
Confidence 77899974 33332 344554 4666664 689999999999976 44677899999999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEE
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 158 (486)
+ +|.+....+..+.. +++|++|+|++|+|+.+| +.+|. +++|++|+|++|+|++..+.+|..+++|++|+
T Consensus 62 ~-~N~i~~~~~~~~~~--~~~L~~L~Ls~N~l~~l~------~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~ 132 (192)
T d1w8aa_ 62 K-RNQLTGIEPNAFEG--ASHIQELQLGENKIKEIS------NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp C-SSCCCCBCTTTTTT--CTTCCEEECCSCCCCEEC------SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred c-cccccccccccccc--ccccceeeeccccccccC------HHHHhCCCcccccccCCccccccCHHHhcCCccccccc
Confidence 9 99999888899988 999999999999998873 44555 88999999999999987788888999999999
Q ss_pred CcCCcCcccccc-hhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccc
Q 048443 159 LSDNNLSGELLQ-CLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 159 Ls~N~i~~~~~~-~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
|++|.+...... ++.. .++.+.+..+.+....|.. +..++.++++.|.+.
T Consensus 133 L~~N~~~~~~~~~~~~~---~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 133 LASNPFNCNCHLAWFAE---WLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183 (192)
T ss_dssp CTTCCBCCSGGGHHHHH---HHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred ccccccccccchHHHhh---hhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCc
Confidence 999988743322 1221 1444455555555444433 334455556655554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=5.6e-18 Score=149.25 Aligned_cols=175 Identities=20% Similarity=0.287 Sum_probs=83.4
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCC
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
.+++.+.++. .++.+|++|++++|.+.... .+..+++|++|+++ +|++++..+ +.. +++|++|++++|+++
T Consensus 33 ~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~-~n~i~~l~~--~~~--l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 33 KKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLN-GNKLTDIKP--LAN--LKNLGWLFLDENKVK 103 (210)
T ss_dssp CSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCCC
T ss_pred cCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCC-CccccCccc--ccc--Ccccccccccccccc
Confidence 3444444432 23556666666666654432 25556666666666 666654322 334 566666666666555
Q ss_pred CCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccccc
Q 048443 113 RFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192 (486)
Q Consensus 113 ~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~ 192 (486)
++|. ...+++|+.|++++|.+. .+ ..+..+++++.+++++|.+++ +..+..++. |+++++++|++++.
T Consensus 104 ~l~~-------l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~-L~~l~l~~n~l~~i 171 (210)
T d1h6ta2 104 DLSS-------LKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTK-LDTLSLEDNQISDI 171 (210)
T ss_dssp CGGG-------GTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTT-CSEEECCSSCCCCC
T ss_pred cccc-------cccccccccccccccccc-cc-ccccccccccccccccccccc--ccccccccc-cccccccccccccc
Confidence 4321 111455555555555554 12 234455555555555555542 122333333 44444444444432
Q ss_pred CCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEc
Q 048443 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL 232 (486)
Q Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 232 (486)
. .+.++++|++|++++|.++. ++ .+.++++|++|+|
T Consensus 172 ~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L 207 (210)
T d1h6ta2 172 V--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 207 (210)
T ss_dssp G--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred c--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEc
Confidence 1 14444444444444444442 22 2444444444444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6.2e-18 Score=152.72 Aligned_cols=220 Identities=15% Similarity=0.065 Sum_probs=169.0
Q ss_pred CEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCc
Q 048443 51 QWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STK 129 (486)
Q Consensus 51 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~ 129 (486)
+.++.++.++. .+|..+. +++++|+++ +|.|+...+.+|.+ +++|++|++++|.+.... -+..+. +++
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls-~n~i~~l~~~~f~~--l~~L~~L~ls~n~~~~~i-----~~~~f~~l~~ 79 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFV-LTKLRVIQKGAFSG--FGDLEKIEISQNDVLEVI-----EADVFSNLPK 79 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEE-SCCCCEECTTTTTT--CTTCCEEEEESCTTCCEE-----CSSSEESCTT
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECc-CCcCCccChhHhhc--cchhhhhhhcccccccee-----eccccccccc
Confidence 56677776755 4555443 579999999 99999777778888 999999999999987531 122344 789
Q ss_pred cCeeeccc-CcccccCCccccCCCCCCEEECcCCcCcccccch-hhhcCCCCcEEEccCccccccCCccccCCC-CccEE
Q 048443 130 IRHYLISK-NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQC-LGNFSGGLSVLSLQGKNFFGTTPDTFMNGS-DLRMV 206 (486)
Q Consensus 130 L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L 206 (486)
++++.+.. |++....+..|.++++|+++++++|.+....+.. +..+.. +..+..+++.+....+..|.+++ .++.|
T Consensus 80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~-l~~~~~~n~~l~~i~~~~~~~~~~~l~~L 158 (242)
T d1xwdc1 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK-VLLDIQDNINIHTIERNSFVGLSFESVIL 158 (242)
T ss_dssp CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSC-EEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred cccccccccccccccccccccccccccccccchhhhcccccccccccccc-cccccccccccccccccccccccccceee
Confidence 99998764 6788778888999999999999999997543333 233333 66667778888887778887765 78999
Q ss_pred ECcCCccccccCccCcCCCCCCEE-EccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcccccccccccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEIS-DLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQ 285 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~ 285 (486)
++++|.++...+..+ ...+++.+ ++++|+++...+..|.++++|+.|++++| .+..+|...|..+..|+.+++.+
T Consensus 159 ~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N---~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 159 WLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT---RIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp ECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS---CCCCCCSSSCTTCCEEESSSEES
T ss_pred ecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCC---cCCccCHHHHcCCcccccCcCCC
Confidence 999999995555444 45555544 67888898766777999999999999998 56788888899999998887766
Q ss_pred c
Q 048443 286 L 286 (486)
Q Consensus 286 ~ 286 (486)
.
T Consensus 235 l 235 (242)
T d1xwdc1 235 L 235 (242)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=2.2e-17 Score=145.44 Aligned_cols=184 Identities=18% Similarity=0.207 Sum_probs=145.3
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCc
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTK 129 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~ 129 (486)
+...++..+.+.+.++. ..+.+|+.|+++ +|.++... .+.. +++|++|++++|+++.++. ...+++
T Consensus 26 ~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~-~~~i~~l~--~l~~--l~~L~~L~L~~n~i~~l~~-------~~~l~~ 91 (210)
T d1h6ta2 26 TIKDNLKKKSVTDAVTQ--NELNSIDQIIAN-NSDIKSVQ--GIQY--LPNVTKLFLNGNKLTDIKP-------LANLKN 91 (210)
T ss_dssp HHHHHTTCSCTTSEECH--HHHHTCCEEECT-TSCCCCCT--TGGG--CTTCCEEECCSSCCCCCGG-------GTTCTT
T ss_pred HHHHHhCcCccCCccCH--HHhcCccEEECc-CCCCCCch--hHhh--CCCCCEEeCCCccccCccc-------cccCcc
Confidence 33445666666554432 356789999999 99988643 3666 9999999999999988632 222789
Q ss_pred cCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECc
Q 048443 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209 (486)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 209 (486)
|++|++++|++++ ++ .+.++++|+.|++++|.+.. ...+..++. ++.+++++|.+++. ..+..+++|++++++
T Consensus 92 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~-l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~ 164 (210)
T d1h6ta2 92 LGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLE 164 (210)
T ss_dssp CCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred ccccccccccccc-cc-cccccccccccccccccccc--ccccccccc-cccccccccccccc--ccccccccccccccc
Confidence 9999999999984 44 58889999999999998863 346777887 99999999998753 356778999999999
Q ss_pred CCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCc
Q 048443 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 210 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 258 (486)
+|.+++. + .+.++++|++|++++|++++. + .+..+++|++|++++
T Consensus 165 ~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 165 DNQISDI-V-PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp SSCCCCC-G-GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred ccccccc-c-cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence 9999853 3 388999999999999999753 3 588999999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=1.9e-17 Score=144.61 Aligned_cols=174 Identities=20% Similarity=0.266 Sum_probs=86.0
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+++++.++ ...++++++|++++|.+... +.+..+++|++|+++ +|++++..| +.+ +++|++|++++|.+
T Consensus 26 ~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls-~N~l~~~~~--l~~--l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 26 GKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS-NNQLTDITP--LKN--LTKLVDILMNNNQI 96 (199)
T ss_dssp TCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCC
T ss_pred CCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccc-cccccCccc--ccC--Cccccccccccccc
Confidence 4445554443 23456666777776665432 235556666666666 566654332 444 55666666665555
Q ss_pred CCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc
Q 048443 112 PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
..++ .+.++++|+.|++++|.+... ..+..++. |+.|++++|++..
T Consensus 97 ~~~~-------------------------------~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~-L~~L~l~~n~l~~ 142 (199)
T d2omxa2 97 ADIT-------------------------------PLANLTNLTGLTLFNNQITDI--DPLKNLTN-LNRLELSSNTISD 142 (199)
T ss_dssp CCCG-------------------------------GGTTCTTCSEEECCSSCCCCC--GGGTTCTT-CSEEECCSSCCCC
T ss_pred cccc-------------------------------ccccccccccccccccccccc--cccchhhh-hHHhhhhhhhhcc
Confidence 4432 234444444444444444321 12333443 4444444444432
Q ss_pred cCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEE
Q 048443 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNIL 254 (486)
Q Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 254 (486)
. +.+..+++|+.|++.+|++++. + .++++++|++|++++|++++. +.++.+++|+.|
T Consensus 143 ~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L 199 (199)
T d2omxa2 143 I--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199 (199)
T ss_dssp C--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred c--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence 1 1344455555555555555532 2 255555556666665555432 234555555543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=1.5e-17 Score=144.39 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=87.6
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCccccc-CCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGE-IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
.+.++.+++.++.+|+ .+ .+++++|+|++|+|++. .+..|.++++|+.|++++|.+....+..+..++. |
T Consensus 10 ~~~v~Cs~~~L~~iP~-------~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~-L 80 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPR-------DI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-I 80 (192)
T ss_dssp TTEEECTTSCCSSCCS-------CC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-C
T ss_pred CCEEEEeCCCcCccCC-------CC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc-c
Confidence 4567777777777543 11 25677777777777643 3455677777777777777777666666666665 7
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
++|++++|++..+.+.+|.++++|++|+|++|.|++..+.+|..+++|++|+|++|.+.
T Consensus 81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 77777777777666667777777777777777777666666777777777777777664
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=7e-17 Score=140.88 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=139.4
Q ss_pred CCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCC
Q 048443 74 LERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLS 152 (486)
Q Consensus 74 L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~ 152 (486)
...+.++ .+.+++..+. .. +.++++|++++|.++.++. +. +++|++|++++|++++. ++ +.+++
T Consensus 20 ~i~~~l~-~~~~~~~~~~--~~--l~~l~~L~l~~~~i~~l~~--------l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~ 84 (199)
T d2omxa2 20 KMKTVLG-KTNVTDTVSQ--TD--LDQVTTLQADRLGIKSIDG--------VEYLNNLTQINFSNNQLTDI-TP-LKNLT 84 (199)
T ss_dssp HHHHHTT-CSSTTSEECH--HH--HTTCCEEECTTSCCCCCTT--------GGGCTTCCEEECCSSCCCCC-GG-GTTCT
T ss_pred HHHHHhC-CCCCCCccCH--HH--hcCCCEEECCCCCCCCccc--------cccCCCcCcCccccccccCc-cc-ccCCc
Confidence 3344565 6666655443 23 7888899999998887532 33 78999999999999854 33 89999
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEc
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL 232 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 232 (486)
+|++|++++|.+.. ++ .+..++. |+.|++++|.+... ..+..+++|+.|++++|.+.. ++ .+..+++|++|++
T Consensus 85 ~L~~L~l~~n~~~~-~~-~l~~l~~-L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l 157 (199)
T d2omxa2 85 KLVDILMNNNQIAD-IT-PLANLTN-LTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNF 157 (199)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCTT-CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred cccccccccccccc-cc-ccccccc-cccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-ccccccccccccc
Confidence 99999999999874 33 4778887 99999999998754 357889999999999999973 33 5889999999999
Q ss_pred cCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcccccccc
Q 048443 233 RNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFA 281 (486)
Q Consensus 233 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l 281 (486)
.+|.+++.. .++.+++|+.|++++| ....++. +..+++|+.|
T Consensus 158 ~~n~l~~l~--~l~~l~~L~~L~ls~N---~i~~i~~--l~~L~~L~~L 199 (199)
T d2omxa2 158 SSNQVTDLK--PLANLTTLERLDISSN---KVSDISV--LAKLTNLESL 199 (199)
T ss_dssp CSSCCCCCG--GGTTCTTCCEEECCSS---CCCCCGG--GGGCTTCSEE
T ss_pred ccccccCCc--cccCCCCCCEEECCCC---CCCCCcc--ccCCCCCCcC
Confidence 999998643 4889999999999998 4555653 6677777653
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=8.5e-17 Score=143.55 Aligned_cols=178 Identities=20% Similarity=0.226 Sum_probs=146.1
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
.+++++. ++ .+.++++|++|++++|++.+..+ +..+++|++++++ +|.++.. ..+.. +++|+.++++++..
T Consensus 49 ~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~-~n~~~~i--~~l~~--l~~L~~l~l~~~~~ 119 (227)
T d1h6ua2 49 FGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS-GNPLKNV--SAIAG--LQSIKTLDLTSTQI 119 (227)
T ss_dssp TTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC-SCCCSCC--GGGTT--CTTCCEEECTTSCC
T ss_pred CCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccc-ccccccc--ccccc--cccccccccccccc
Confidence 6677765 44 58999999999999999877644 8999999999999 8888743 35777 99999999999988
Q ss_pred CCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc
Q 048443 112 PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
..++. ....+.++.+.++++.+.. ...+..+++|++|++++|.+.+. ..+..+++ |++|++++|++++
T Consensus 120 ~~~~~-------~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~-L~~L~Ls~n~l~~ 187 (227)
T d1h6ua2 120 TDVTP-------LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSK-LTTLKADDNKISD 187 (227)
T ss_dssp CCCGG-------GTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTT-CCEEECCSSCCCC
T ss_pred cccch-------hccccchhhhhchhhhhch--hhhhccccccccccccccccccc--hhhccccc-ceecccCCCccCC
Confidence 76422 2226889999999999874 33578899999999999998743 34788887 9999999999976
Q ss_pred cCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccC
Q 048443 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234 (486)
Q Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 234 (486)
. + .+.++++|++|++++|++++. + .++++++|++|++++
T Consensus 188 l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 188 I-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred C-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 4 3 388899999999999999954 4 388999999999874
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=9.9e-19 Score=173.08 Aligned_cols=347 Identities=18% Similarity=0.119 Sum_probs=180.6
Q ss_pred hhhhc-cCCcccccC-CcCCCCCCCCCEeeCcCCCCCC----CCcccccCCCCCCeeccCCCCcccccC----Cchhccc
Q 048443 27 LDRLQ-RLSDFSGQI-PPSLGNLNQLQWLDLAFNNFLR----ELPASIGSLSSLERLDTFPPMKIHGNI----PKWLLNP 96 (486)
Q Consensus 27 l~~L~-~~n~~~~~~-p~~~~~l~~L~~L~Ls~n~~~~----~~~~~~~~l~~L~~L~L~~~n~i~~~~----p~~~~~~ 96 (486)
|+.|+ +.|++++.- .+-+..+++++.|+|++|.++. .+...+..+++|++|||+ +|.|+... ...+...
T Consensus 4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs-~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-SNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-TCCCHHHHHHHHHHTTCST
T ss_pred CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECc-CCcCChHHHHHHHHHHhcC
Confidence 44455 556665421 2234445667777777776552 223445566777777777 66665321 1222111
Q ss_pred cCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc----------------------------
Q 048443 97 SMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW---------------------------- 147 (486)
Q Consensus 97 ~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~---------------------------- 147 (486)
..+|++|+|++|.++.... ..++..+. .++|++|++++|.++......
T Consensus 83 -~~~L~~L~L~~n~it~~~~--~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
T d1z7xw1 83 -SCKIQKLSLQNCCLTGAGC--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159 (460)
T ss_dssp -TCCCCEEECTTSCCBGGGH--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred -CCCCCEEECCCCCcccccc--ccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence 2467777777776653110 00111222 566777777777654210000
Q ss_pred -----ccCCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEccCcccccc----CCccccCCCCccEEECcCCccc
Q 048443 148 -----ICNLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 148 -----~~~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
+.....++.++++++.+.... ...+.........+++..+.+... ....+...+.++.+++.+|.+.
T Consensus 160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~ 239 (460)
T d1z7xw1 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence 111234445555444433110 011111111244555555544321 1112334577889999888764
Q ss_pred c-----ccCccCcCCCCCCEEEccCCccccC----CCccccCCCCCCEEEcCccCCCcccc----CChhhhhcccccccc
Q 048443 215 G-----KIPKSLANCAVLEISDLRNNQINDT----FPIWLGSLLELNILVLIQQLPCFMGK----LPSKYFQCWNAMKFA 281 (486)
Q Consensus 215 ~-----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----ip~~~~~~l~~L~~l 281 (486)
. ..+........++.+++++|.+... ...++...+.++.++++++. .... +..........|+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~--i~~~~~~~l~~~l~~~~~~L~~l 317 (460)
T d1z7xw1 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE--LGDEGARLLCETLLEPGCQLESL 317 (460)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC--CHHHHHHHHHHHHTSTTCCCCEE
T ss_pred ccccchhhccccccccccccccccccccccccccccccccccccccccccccccc--ccccccchhhccccccccccccc
Confidence 2 2233455677899999999987643 22345567889999988863 1110 111111122345555
Q ss_pred ccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccccc----Cccchh-ccCCCCe
Q 048443 282 NSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE----MPTSIA-NLKGLQV 356 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~-~l~~L~~ 356 (486)
+++++.......... .......++|++|+|++|.+++. ++..+. ..+.|++
T Consensus 318 ~l~~~~l~~~~~~~l------------------------~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~ 373 (460)
T d1z7xw1 318 WVKSCSFTAACCSHF------------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 373 (460)
T ss_dssp ECTTSCCBGGGHHHH------------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cccccchhhhhhhhc------------------------ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCE
Confidence 554442111000000 00011135688888888888643 222332 3566888
Q ss_pred eeCCCcccCcc----CchhccCCCCCCEEeCCCCCCC----------------CCCEEeccCCcccc
Q 048443 357 LGLASNNLQGH----IPSCLGSLTNLESLDLSKNRLT----------------FLEFFNATHNNLTG 403 (486)
Q Consensus 357 L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~----------------~L~~L~ls~N~l~~ 403 (486)
|+|++|.|++. +++.+..+++|++|||++|+++ .|+.|++.+|.+..
T Consensus 374 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 88888888743 3445666788888888888832 57788888877653
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=8.1e-17 Score=159.08 Aligned_cols=327 Identities=16% Similarity=0.092 Sum_probs=202.7
Q ss_pred CcccceeeeehhccC----CChhhhhhc----cCCcccc----cCCcCCCCCCCCCEeeCcCCCCCCCC----ccccc-C
Q 048443 8 ELTRLTILLFYLMTS----DSPFLDRLQ----RLSDFSG----QIPPSLGNLNQLQWLDLAFNNFLREL----PASIG-S 70 (486)
Q Consensus 8 ~l~~l~~~~~~~~~~----~~~~l~~L~----~~n~~~~----~~p~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~-~ 70 (486)
+|+.+|++.+++... ..|.++.++ ++|.++. .++..+..+++|++|||++|++.... ...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 567888887774432 234444443 6676662 44566788999999999999975322 22332 2
Q ss_pred CCCCCeeccCCCCccccc----CCchhccccCCCCcEEEccCCCCCCC-----------CCC---------CCCCCcc--
Q 048443 71 LSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRF-----------DQH---------PTVLPWT-- 124 (486)
Q Consensus 71 l~~L~~L~L~~~n~i~~~----~p~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~l---------~~l~p~~-- 124 (486)
..+|++|+++ +|++++. ++..+.. +++|++|++++|.++.. ... .......
T Consensus 83 ~~~L~~L~L~-~n~it~~~~~~l~~~l~~--~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
T d1z7xw1 83 SCKIQKLSLQ-NCCLTGAGCGVLSSTLRT--LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159 (460)
T ss_dssp TCCCCEEECT-TSCCBGGGHHHHHHHTTS--CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCCCEEECC-CCCccccccccccchhhc--cccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence 3579999999 9998754 3456666 89999999999987521 000 0000000
Q ss_pred -----cc-cCccCe-----------------------------eecccCccccc----CCccccCCCCCCEEECcCCcCc
Q 048443 125 -----TL-STKIRH-----------------------------YLISKNNLTGE----IPSWICNLSSLYVLDLSDNNLS 165 (486)
Q Consensus 125 -----~~-~~~L~~-----------------------------L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~ 165 (486)
.. ...++. +++..+.+... ....+...+.++.+++++|.+.
T Consensus 160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~ 239 (460)
T d1z7xw1 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence 00 123333 44444433311 1122345678999999999875
Q ss_pred cc-----ccchhhhcCCCCcEEEccCccccccC----CccccCCCCccEEECcCCccccccCcc-----CcCCCCCCEEE
Q 048443 166 GE-----LLQCLGNFSGGLSVLSLQGKNFFGTT----PDTFMNGSDLRMVDLSHNLLQGKIPKS-----LANCAVLEISD 231 (486)
Q Consensus 166 ~~-----~~~~l~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p~~-----~~~l~~L~~L~ 231 (486)
.. ......... .++.+++++|.+.... ...+...+.++.+++++|.++...... ......|+.++
T Consensus 240 ~~~~~~~~~~~~~~~~-~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~ 318 (460)
T d1z7xw1 240 DVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 318 (460)
T ss_dssp HHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ccccchhhcccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 32 111222233 4999999999886432 223456788999999999986432221 12356899999
Q ss_pred ccCCccccCCCcc----ccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCC
Q 048443 232 LRNNQINDTFPIW----LGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQ 307 (486)
Q Consensus 232 L~~N~l~~~~~~~----~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (486)
+++|.+....... +...++|+.|++++|. ++......+. .
T Consensus 319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~---i~~~g~~~l~--~------------------------------- 362 (460)
T d1z7xw1 319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNR---LEDAGVRELC--Q------------------------------- 362 (460)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB---CHHHHHHHHH--H-------------------------------
T ss_pred ccccchhhhhhhhcccccccccchhhhheeeec---ccCcccchhh--h-------------------------------
Confidence 9999987553333 3456789999999872 1110000000 0
Q ss_pred CcceEEeecCCCccccCcccCcccEEEccccccccc----CccchhccCCCCeeeCCCcccCccCchh----cc-CCCCC
Q 048443 308 NDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE----MPTSIANLKGLQVLGLASNNLQGHIPSC----LG-SLTNL 378 (486)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~-~l~~L 378 (486)
......+.|++|+|++|+|++. ++..+...++|++|+|++|+|++..... +. +...|
T Consensus 363 --------------~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L 428 (460)
T d1z7xw1 363 --------------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428 (460)
T ss_dssp --------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCC
T ss_pred --------------hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCcc
Confidence 0000124599999999999753 4455677899999999999998543333 32 34479
Q ss_pred CEEeCCCCCC
Q 048443 379 ESLDLSKNRL 388 (486)
Q Consensus 379 ~~L~Ls~N~l 388 (486)
+.|++++|.+
T Consensus 429 ~~l~l~~~~~ 438 (460)
T d1z7xw1 429 EQLVLYDIYW 438 (460)
T ss_dssp CEEECTTCCC
T ss_pred CEEECCCCCC
Confidence 9999999984
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=9.7e-15 Score=116.14 Aligned_cols=102 Identities=25% Similarity=0.281 Sum_probs=58.8
Q ss_pred eeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCC
Q 048443 132 HYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHN 211 (486)
Q Consensus 132 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N 211 (486)
+|++++|+++ .++ .+..+++|++|++++|+++ .+|..++.++. |+.|++++|.+++. + .+..+++|++|++++|
T Consensus 2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~-L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRC-LEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTT-CCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhc-cccccccccccccc-C-ccccccccCeEECCCC
Confidence 4555555555 333 2555566666666666665 34555555554 66666666666543 2 3556666666777666
Q ss_pred cccccc-CccCcCCCCCCEEEccCCcccc
Q 048443 212 LLQGKI-PKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 212 ~l~~~~-p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+++... ...+..+++|++|++++|++++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 666332 1346666777777777776653
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.8e-15 Score=123.47 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=48.7
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
+.+|++|||++|+|+.++. .+. +++|++|++++|+|+. ++ .|..+++|++|++++|+++...+..+..++
T Consensus 17 ~~~lr~L~L~~n~I~~i~~-------~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~ 87 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP 87 (162)
T ss_dssp TTSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCcCcEEECCCCCCCccCc-------cccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccc
Confidence 4445555555555544321 111 4445555555555542 22 244555555555555555532222333444
Q ss_pred CCCcEEEccCccccccCC-ccccCCCCccEEECcCCccc
Q 048443 177 GGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~ 214 (486)
. |+.|++++|++..... ..+..+++|++|++++|.++
T Consensus 88 ~-L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 88 D-LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp T-CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred c-cccceeccccccccccccccccccccchhhcCCCccc
Confidence 3 5555555555443211 23444455555555555544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.1e-15 Score=126.18 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=93.3
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
..++++|+|++|+|+ .++..+..+++|+.|++++|+|+. + +.+..++. |++|++++|+++...+..+..+++|++|
T Consensus 17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~-L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRR-LKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSS-CCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcc-hhhhhcccccccCCCccccccccccccc
Confidence 567888889988888 556667778888888888888873 3 34667776 8888888888887766666778888888
Q ss_pred ECcCCccccccC-ccCcCCCCCCEEEccCCccccCCC---ccccCCCCCCEEE
Q 048443 207 DLSHNLLQGKIP-KSLANCAVLEISDLRNNQINDTFP---IWLGSLLELNILV 255 (486)
Q Consensus 207 ~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~ 255 (486)
++++|+++.... ..+..+++|++|++++|+++.... ..+..+++|+.||
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 888888874322 357778888888888888864321 2456677777766
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.8e-15 Score=138.13 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=52.8
Q ss_pred CcccEEEcccc-cccccCccchhccCCCCeeeCCCc-ccCccCchhccCCCCCCEEeCCCCC--------CCCCCEEecc
Q 048443 328 DILKGIILSSN-RFDGEMPTSIANLKGLQVLGLASN-NLQGHIPSCLGSLTNLESLDLSKNR--------LTFLEFFNAT 397 (486)
Q Consensus 328 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls 397 (486)
++|++|++++| .+++.....+.++++|++|++++| .+++.....++.+++|++|+++++- ...+..|++.
T Consensus 175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i~ 254 (284)
T d2astb2 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN 254 (284)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEES
T ss_pred ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccccc
Confidence 55777778775 466666667777888888888884 5766666667778888888888763 1124445566
Q ss_pred CCccccCC
Q 048443 398 HNNLTGPI 405 (486)
Q Consensus 398 ~N~l~~~~ 405 (486)
.+.++...
T Consensus 255 ~~~ls~~~ 262 (284)
T d2astb2 255 CSHFTTIA 262 (284)
T ss_dssp CCCSCCTT
T ss_pred CccCCCCC
Confidence 66666443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2.8e-14 Score=113.40 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=75.4
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
|+|+|++|+++.++. +. +++|++|++++|+++ .+|..|..+++|++|++++|.+++ +| .+..++. |+
T Consensus 1 R~L~Ls~n~l~~l~~--------l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~-L~ 68 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH--------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPR-LQ 68 (124)
T ss_dssp SEEECTTSCCSSCCC--------GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSS-CC
T ss_pred CEEEcCCCCCCCCcc--------cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccc-cC
Confidence 467777777766432 22 567777777777776 556667777777777777777763 33 4666666 77
Q ss_pred EEEccCccccccCC-ccccCCCCccEEECcCCcccccc---CccCcCCCCCCEE
Q 048443 181 VLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKI---PKSLANCAVLEIS 230 (486)
Q Consensus 181 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L 230 (486)
+|++++|++..... ..+..+++|++|++++|.++... ......+++|+.+
T Consensus 69 ~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred eEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 77777777765432 45667778888888888776321 1122335566554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.51 E-value=1.6e-15 Score=144.07 Aligned_cols=190 Identities=17% Similarity=0.113 Sum_probs=87.4
Q ss_pred cCCCCCCCCCEeeCcCCCCCCCC----cccccCCCCCCeeccCCCCccccc----------CCchhccccCCCCcEEEcc
Q 048443 42 PSLGNLNQLQWLDLAFNNFLREL----PASIGSLSSLERLDTFPPMKIHGN----------IPKWLLNPSMKNFSYLNLS 107 (486)
Q Consensus 42 ~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~l~~L~~L~L~~~n~i~~~----------~p~~~~~~~l~~L~~L~Ls 107 (486)
..+.+...++.|+|++|.+.... ...+...++|+.|+++ ++..... +...+.. .++|+.|+|+
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~-~~~~~~~~~~~~~~~~~l~~~l~~--~~~L~~L~L~ 101 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLK--CPKLHTVRLS 101 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-SCCTTSCGGGSHHHHHHHHHHHTT--CTTCCEEECC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECC-CCcccccccccchHHHHHHHHHhh--CCCccccccc
Confidence 34555677777777777764322 2344566777777776 5433211 1122333 5667777777
Q ss_pred CCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc-------------ccCCCCCCEEECcCCcCcccc----c
Q 048443 108 KNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW-------------ICNLSSLYVLDLSDNNLSGEL----L 169 (486)
Q Consensus 108 ~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~Ls~N~i~~~~----~ 169 (486)
+|.++.... .. +...+. .++|++|++++|.++...... ....+.|+.+++++|.++... .
T Consensus 102 ~n~i~~~~~-~~-l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 102 DNAFGPTAQ-EP-LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp SCCCCTTTH-HH-HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred ccccccccc-cc-hhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence 666653100 00 000111 455666666666554211000 123445555555555554211 1
Q ss_pred chhhhcCCCCcEEEccCcccccc-----CCccccCCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCcc
Q 048443 170 QCLGNFSGGLSVLSLQGKNFFGT-----TPDTFMNGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQI 237 (486)
Q Consensus 170 ~~l~~~~~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l 237 (486)
..+..... |++|++++|.+... +...+...++|+.|++++|.++.. +...+..+++|++|++++|.+
T Consensus 180 ~~l~~~~~-L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i 255 (344)
T d2ca6a1 180 KTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255 (344)
T ss_dssp HHHHHCTT-CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred chhhhhhh-hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence 12223333 55555555554321 122233444555555555544321 122334444555555555544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.6e-15 Score=137.36 Aligned_cols=183 Identities=19% Similarity=0.140 Sum_probs=109.6
Q ss_pred CCCCCCCCEeeCcCCCCCCC-CcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCC-CCCCCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRE-LPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKN-YFPRFDQHPTVL 121 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~ 121 (486)
.....+|++||++++.+... +...+..+++|++|++. ++.+++..+..+.. +++|++|+++++ .++... +
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~-~~~l~~~~~~~l~~--~~~L~~L~Ls~c~~itd~~-----l 113 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE-GLRLSDPIVNTLAK--NSNLVRLNLSGCSGFSEFA-----L 113 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT-TCBCCHHHHHHHTT--CTTCSEEECTTCBSCCHHH-----H
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc-ccCCCcHHHHHHhc--CCCCcCccccccccccccc-----c
Confidence 34456788888888876543 34456778888888888 78887777777777 888888888875 343110 0
Q ss_pred Ccccc-cCccCeeecccCc-cccc-CCccccC-CCCCCEEECcCC--cCcccccc-hhhhcCCCCcEEEccCc-cccccC
Q 048443 122 PWTTL-STKIRHYLISKNN-LTGE-IPSWICN-LSSLYVLDLSDN--NLSGELLQ-CLGNFSGGLSVLSLQGK-NFFGTT 193 (486)
Q Consensus 122 p~~~~-~~~L~~L~Ls~n~-l~~~-~~~~~~~-l~~L~~L~Ls~N--~i~~~~~~-~l~~~~~~L~~L~L~~n-~i~~~~ 193 (486)
..... +++|++|++++|. ++.. +...+.. .++|+.|+++++ .++..... ....+++ |++|++++| .+++..
T Consensus 114 ~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~-L~~L~L~~~~~itd~~ 192 (284)
T d2astb2 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSVMLKNDC 192 (284)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCTTCCGGG
T ss_pred chhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccc-ccccccccccCCCchh
Confidence 01111 5777777777753 3321 1122222 356777777754 23322112 2234454 777777664 355555
Q ss_pred CccccCCCCccEEECcCC-ccccccCccCcCCCCCCEEEccCC
Q 048443 194 PDTFMNGSDLRMVDLSHN-LLQGKIPKSLANCAVLEISDLRNN 235 (486)
Q Consensus 194 ~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N 235 (486)
...+..+++|++|+++++ .+++.....++++++|++|+++++
T Consensus 193 ~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 555666677777777764 455444445666667777777665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.43 E-value=4.5e-14 Score=133.94 Aligned_cols=45 Identities=11% Similarity=0.009 Sum_probs=29.5
Q ss_pred cccccCCCCCCeeccCCCCcccccC----CchhccccCCCCcEEEccCCCCC
Q 048443 65 PASIGSLSSLERLDTFPPMKIHGNI----PKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 65 ~~~~~~l~~L~~L~L~~~n~i~~~~----p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
...+.....|+.|+|+ +|.+.... ...+.. .++|+.|+++++...
T Consensus 24 ~~~L~~~~~l~~L~Ls-~n~i~~~~~~~l~~~l~~--~~~L~~l~l~~~~~~ 72 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLS-GNTIGTEAARWLSENIAS--KKDLEIAEFSDIFTG 72 (344)
T ss_dssp SHHHHHCSCCCEEECT-TSEECHHHHHHHHHTTTT--CTTCCEEECCSCCTT
T ss_pred HHHHhhCCCCCEEECc-CCcCCHHHHHHHHHHHHh--CCCCCEEECCCCccc
Confidence 3455667788888888 77776432 233444 677888888777554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.5e-12 Score=106.36 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=82.9
Q ss_pred CCcccccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCC-CCCCCcccccCCCCCCeecc
Q 048443 1 EKRCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNN-FLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L 79 (486)
|..|.|...+.++.+. +++. .+|..+..+++|++|++++|+ +..+.+.+|.++++|+.|++
T Consensus 2 P~~C~c~~~~~l~c~~-----------------~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~L 63 (156)
T d2ifga3 2 PDACCPHGSSGLRCTR-----------------DGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63 (156)
T ss_dssp CSSSCCSSSSCEECCS-----------------SCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC
T ss_pred cCCCCcCCCCeEEecC-----------------CCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCccee
Confidence 6789998766655532 2222 346677888899999997664 77777788999999999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCccc
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLT 141 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~ 141 (486)
+ +|+|+.+.+.+|.. +++|++|+|++|+|+.+|. ..+...+|++|+|++|.+.
T Consensus 64 s-~N~l~~i~~~~f~~--l~~L~~L~Ls~N~l~~l~~------~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 64 V-KSGLRFVAPDAFHF--TPRLSRLNLSFNALESLSW------KTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp C-SSCCCEECTTGGGS--CSCCCEEECCSSCCSCCCS------TTTCSCCCCEEECCSSCCC
T ss_pred e-ccccCCcccccccc--cccccceeccCCCCcccCh------hhhccccccccccCCCccc
Confidence 9 99999888888888 8888888888888887642 2222335666666666553
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.35 E-value=2.2e-14 Score=124.24 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=22.3
Q ss_pred cccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCC
Q 048443 65 PASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPR 113 (486)
Q Consensus 65 ~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~ 113 (486)
+.++..+++|++|+|+ +|+|+.. + .+.. +++|++|++++|.++.
T Consensus 41 ~~sl~~L~~L~~L~Ls-~n~I~~i-~-~l~~--l~~L~~L~Ls~N~i~~ 84 (198)
T d1m9la_ 41 DATLSTLKACKHLALS-TNNIEKI-S-SLSG--MENLRILSLGRNLIKK 84 (198)
T ss_dssp HHHHHHTTTCCEEECS-EEEESCC-C-CHHH--HTTCCEEECCEEEECS
T ss_pred hhHHhcccccceeECc-ccCCCCc-c-cccC--CccccChhhccccccc
Confidence 3445555555555555 5555532 2 2444 5555555555555444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.34 E-value=2.2e-14 Score=124.20 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=99.4
Q ss_pred CCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCccc
Q 048443 89 IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGE 167 (486)
Q Consensus 89 ~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 167 (486)
++..+.. +++|++|+|++|+|+.++ .+. +++|++|++++|.++ .+|..+..+++|+.|++++|+++.
T Consensus 40 l~~sl~~--L~~L~~L~Ls~n~I~~i~--------~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~- 107 (198)
T d1m9la_ 40 MDATLST--LKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS- 107 (198)
T ss_dssp CHHHHHH--TTTCCEEECSEEEESCCC--------CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-
T ss_pred hhhHHhc--ccccceeECcccCCCCcc--------cccCCccccChhhcccccc-cccccccccccccccccccccccc-
Confidence 3456777 899999999999988753 233 789999999999988 566666667789999999999884
Q ss_pred ccchhhhcCCCCcEEEccCccccccCC-ccccCCCCccEEECcCCccccccCcc----------CcCCCCCCEEE
Q 048443 168 LLQCLGNFSGGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKIPKS----------LANCAVLEISD 231 (486)
Q Consensus 168 ~~~~l~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~L~ 231 (486)
+ ..+..++. |+.|++++|+++.... ..+..+++|+.|++++|.+....+.. +..+++|+.||
T Consensus 108 l-~~~~~l~~-L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 108 L-SGIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHHHHH-SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred c-cccccccc-ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 3 35777776 9999999999876432 45788899999999999887544332 45688999886
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.1e-11 Score=102.45 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=69.7
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCC-cCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN-NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
...++++.+++.++ ..|..+..+++|++|++++| .++...+.+|..++. |+.|++++|+|+.+.+.+|..+++|++|
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~-L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE-LRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCC-CSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccc-cCcceeeccccCCcccccccccccccce
Confidence 34455666666666 45566666777777777654 366555555666665 7777777777776666777777777777
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+|++|+++...+..|. ...|+.|+|++|++.
T Consensus 86 ~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 86 NLSFNALESLSWKTVQ-GLSLQELVLSGNPLH 116 (156)
T ss_dssp ECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred eccCCCCcccChhhhc-cccccccccCCCccc
Confidence 7777777743333343 335777777777664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=4.3e-09 Score=87.08 Aligned_cols=106 Identities=22% Similarity=0.076 Sum_probs=59.1
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S 127 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~ 127 (486)
+.+.||++++... ..+..+..+..++.. ++. ...++..+.. +++|++|+|++|+|+.++. ++..+. +
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~-~~~-~~~l~~~~~~--~~~L~~L~Ls~N~i~~l~~----~~~~~~~l 90 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRR-SSM-AATLRIIEEN--IPELLSLNLSNNRLYRLDD----MSSIVQKA 90 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSH-HHH-HHHHHHHHHH--CTTCCCCCCCSSCCCCCSG----GGTHHHHS
T ss_pred hhCeeecccCCCC----chhhhccchhhcchh-hhH-hhhhHHHHHh--CCCCCEeeCCCccccCCch----hHHHHhhC
Confidence 4566777765522 123444445555543 332 2233444455 7888888888888877533 222233 5
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG 166 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 166 (486)
++|++|++++|.|+...+-.+.....|+.|++++|.+..
T Consensus 91 ~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 91 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred CcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 667777777777664333233344456666666666653
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=4.8e-09 Score=86.79 Aligned_cols=87 Identities=21% Similarity=0.159 Sum_probs=48.3
Q ss_pred CCccccCCCCCCEEECcCCcCcccc--cchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCc--
Q 048443 144 IPSWICNLSSLYVLDLSDNNLSGEL--LQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPK-- 219 (486)
Q Consensus 144 ~~~~~~~l~~L~~L~Ls~N~i~~~~--~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-- 219 (486)
++..+..+++|++|+|++|+|+... +..+..++. |+.|++++|.|+...+-.+....+|+.|++++|.+......
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~-L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~ 135 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPN-LKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTT-CCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCc-ccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence 3444456677777777777776432 234555555 66666666666554333333444566666666666533221
Q ss_pred -----cCcCCCCCCEEE
Q 048443 220 -----SLANCAVLEISD 231 (486)
Q Consensus 220 -----~~~~l~~L~~L~ 231 (486)
.+..+|+|++||
T Consensus 136 ~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 136 TYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHTTSTTCCEET
T ss_pred hHHHHHHHHCCCCCEEC
Confidence 134456666553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.78 E-value=6.8e-06 Score=67.58 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=29.8
Q ss_pred cccCCCCCCEEECcCCcCccccc----chhhhcCCCCcEEEccCccccccC----CccccCCCCccEEECcCCc
Q 048443 147 WICNLSSLYVLDLSDNNLSGELL----QCLGNFSGGLSVLSLQGKNFFGTT----PDTFMNGSDLRMVDLSHNL 212 (486)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~i~~~~~----~~l~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~N~ 212 (486)
++...+.|++|++++|.+..... ..+...+. |++|++++|.+.... ..++...++|++|++++|.
T Consensus 39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~-L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPS-LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS-CCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHhhCCccceeeccccccchhHHHHHhhhhhhccc-ccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 34445556666666666553211 12222332 555555555544321 1223344555555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.62 E-value=2.2e-05 Score=64.37 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=16.7
Q ss_pred CccCeeecccCccccc----CCccccCCCCCCEEECcCCcC
Q 048443 128 TKIRHYLISKNNLTGE----IPSWICNLSSLYVLDLSDNNL 164 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i 164 (486)
+.|++|+|++|.++.. +..++...+.|++|++++|.+
T Consensus 72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence 3444444444444421 122334445555666655543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.24 E-value=4.7e-05 Score=62.30 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=42.5
Q ss_pred cccCCCCCCEEECcCCcCccccc----chhhhcCCCCcEEEccCcccccc----CCccccCCCCccEEEC--cCCcccc-
Q 048443 147 WICNLSSLYVLDLSDNNLSGELL----QCLGNFSGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDL--SHNLLQG- 215 (486)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~i~~~~~----~~l~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L--~~N~l~~- 215 (486)
++...++|++|++++|.++.... ..+..... ++.+++++|.+... +...+...++|+.++| ++|.+..
T Consensus 41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~-l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~ 119 (166)
T d1io0a_ 41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT-LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 119 (166)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS-CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHhcCCccCeeeccCCcccHHHHHHHHHHHhhccc-chhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence 34456666666666666653221 22233333 55666655555322 1123344555655444 3444432
Q ss_pred ---ccCccCcCCCCCCEEEccCCc
Q 048443 216 ---KIPKSLANCAVLEISDLRNNQ 236 (486)
Q Consensus 216 ---~~p~~~~~l~~L~~L~L~~N~ 236 (486)
.+...+...+.|+.|+++.+.
T Consensus 120 ~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 120 VEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCcCEEeCcCCC
Confidence 122334455666666665543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.62 E-value=0.00038 Score=56.56 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=17.9
Q ss_pred CCCCCCEeeCcC-CCCCCCC----cccccCCCCCCeeccCCCCccc
Q 048443 46 NLNQLQWLDLAF-NNFLREL----PASIGSLSSLERLDTFPPMKIH 86 (486)
Q Consensus 46 ~l~~L~~L~Ls~-n~~~~~~----~~~~~~l~~L~~L~L~~~n~i~ 86 (486)
+.+.|++|+|++ +.+.... -.++...++|++|+++ +|.++
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls-~n~l~ 59 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-GTRSN 59 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-TSCCC
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeecc-CCccc
Confidence 345566666655 2332211 1223344555555555 44444
|