Citrus Sinensis ID: 048464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MSSSSAIFSLFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGFIKVAPQLSIK
cccccHHHHHHHHHHHHHHHHccccccccccEEcccccccccEEEEcccccEEEEcccEEEEEEccccccccEEEEEEEEEcccccccEEEEcccccccccccEEEEcccccEEEEcccccEEEEcccccccccEEEEcccccEEEEcccccEEEEcccccccccccccccccccEEEEEEcccccccccccEEEEEEccccEEEEEcccccccEEEEcccccccccccEEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEccccccccccEEEEEEccccccccccEEEcccccHHHHHHHHHcccccccEEEccccccEEEcccEEEEEEccccccEEEEEEccccccc
cccHHHHEEEEEEEEEcHHHEccccccccEEEEEEccccEEEEEEEEccccEEEccccEEEEEEEcccccccEEEEEEEEEccccccEEEEEEccccccccccEEEEEccccEEEEEccccEEEEcccccccccHHEEcccccEEEEcccccEEEEEcccccccccccccccccccHEEEccccccccccccEEEEEccccccEEEEEccccEEEEEEcccccccccccEEEccccccccEEEEEEEEcccEEEEEEEEEcccHHEEEEHHHEEEEEEccccccEEEEEEccccccccccHHHcccccEEcccccccccccccccccccccEEccEccccccccEEEEcccccccccEEEEccccccHHHHHHHHHHccccEEEEEEcccccEEEEEcHHHHHHHccccccEEEEEcHHHHcc
MSSSSAIFSLFFLCSLIFSIanaqvpanerfkfvnegefgpfineydadyrmirifnspfqlgfynttpNAYTLALRWgiqrneplyRWVWEanrgkpvrenatfslgtdgnlvlaEANGTVVwqsntsnkgvvgfkllpngnmvlhdskgnfiwqsfdyptdtllvgqslrvggVTKLVSRLSikenvdgpysfvmeSDRLSlyykssnaprpvvyftfpvqfsglknvtfnsapetDEAFAYQLTldsssggvlfwqgqrvdgnlriftyydkvdsqpteetftlfdrdsiwetecqlpercgkfglcddnqcvacptekgllgwskecapTLVNFCRIAAFHYYKVEGVDHYISKynngtgpirvedcgnrcstdcrcvgyfyhqetskcwiafdlktltkfpnsthvgfikvapqlsik
MSSSSAIFSLFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSrlsikenvdgpysFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYydkvdsqpteetftlfdrdsIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTkfpnsthvgfikvapqlsik
MssssaifslfflcslifsiaNAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGFIKVAPQLSIK
*****AIFSLFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGFIKVA******
****SAI*SLFFLCSLIFSIANAQVPANERFKFV****************RMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGFIKVAPQL***
MSSSSAIFSLFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGFIKVAPQLSIK
**SSSAIFSLFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGFIKVAPQL***
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSSSAIFSLFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAYQLTLDSSSGGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSIWETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGFIKVAPQLSIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
Q39688389 Epidermis-specific secret N/A no 0.803 0.874 0.533 1e-103
O65238 872 G-type lectin S-receptor- no no 0.702 0.340 0.260 2e-20
P22553435 S-locus-specific glycopro N/A no 0.728 0.708 0.283 5e-19
P17840435 S-locus-specific glycopro N/A no 0.713 0.694 0.271 1e-18
P17801 817 Putative receptor protein N/A no 0.763 0.395 0.244 2e-18
Q9FLV4 872 G-type lectin S-receptor- no no 0.782 0.379 0.294 3e-18
Q8RWZ5 821 G-type lectin S-receptor- no no 0.853 0.439 0.246 5e-18
Q09092 857 Putative serine/threonine N/A no 0.716 0.353 0.269 2e-16
P07761436 S-locus-specific glycopro N/A no 0.718 0.697 0.277 3e-16
P22551444 S-locus-specific glycopro N/A no 0.721 0.686 0.285 2e-15
>sp|Q39688|EP1G_DAUCA Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/375 (53%), Positives = 250/375 (66%), Gaps = 35/375 (9%)

Query: 10  LFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGFYNTTP 69
           LFF+  + F   +  VPANE FKFVNEGE G +I+EY  DYR +  F SPFQL FYN TP
Sbjct: 13  LFFIQRIDF--CHTLVPANETFKFVNEGELGQYISEYFGDYRPLDPFTSPFQLCFYNQTP 70

Query: 70  NAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTS 129
            A+TLALR G++R E L RWVWEANRG PV ENAT + G DGNLVLA +NG V WQ++T+
Sbjct: 71  TAFTLALRMGLRRTESLMRWVWEANRGNPVDENATLTFGPDGNLVLARSNGQVAWQTSTA 130

Query: 130 NKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENV 189
           NKGVVG K+LPNGNMVL+DSKG F+WQSFD PTDTLLVGQSL++G VTKLVSR S  ENV
Sbjct: 131 NKGVVGLKILPNGNMVLYDSKGKFLWQSFDTPTDTLLVGQSLKMGAVTKLVSRASPGENV 190

Query: 190 DGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPV-----QFSGLKNVTFNSAPETDEAFAY 244
           +GPYS VME   L LYYK + +P+P+ Y++F +     +   L+NVTF    E D+ FA+
Sbjct: 191 NGPYSLVMEPKGLHLYYKPTTSPKPIRYYSFSLFTKLNKNESLQNVTFEFENENDQGFAF 250

Query: 245 QLTL----DSSSGGV-----------LFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFD 289
            L+L     +S GG            L +    +DGN++I+TY DKVD    E T+TLF 
Sbjct: 251 LLSLKYGTSNSLGGASILNRIKYNTTLSFLRLEIDGNVKIYTYNDKVDYGAWEVTYTLFL 310

Query: 290 RD-------SIWET-----ECQLPERCGKFGLCDDNQCVACPTEKG-LLGWSKECAPTLV 336
           +        S+  T     ECQLP++CG FGLC+++QCV CPT  G +L WSK C P  +
Sbjct: 311 KAPPPLFQVSLAATESESSECQLPKKCGNFGLCEESQCVGCPTSSGPVLAWSKTCEPPKL 370

Query: 337 NFCRIAAFHYYKVEG 351
           + C    FHY K+ G
Sbjct: 371 SSCGPKDFHYNKLGG 385
May be involved in the limitation of water flow through the outer epidermal cell wall, either by direct modification of wall structure or as a signal instructing the protoplast to restrict water transport across the cell wall.
Daucus carota (taxid: 4039)
>sp|O65238|Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2 Back     alignment and function description
>sp|P22553|SLSG2_BRAOA S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1 Back     alignment and function description
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1 Back     alignment and function description
>sp|Q09092|SRK6_BRAOE Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=2 Back     alignment and function description
>sp|P07761|SLSG6_BRAOL S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|P22551|SLSG0_BRAOA S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
224117046426 predicted protein [Populus trichocarpa] 0.976 0.969 0.617 1e-148
147834750444 hypothetical protein VITISV_035367 [Viti 0.978 0.932 0.589 1e-148
224117048426 predicted protein [Populus trichocarpa] 0.976 0.969 0.617 1e-148
359493598444 PREDICTED: epidermis-specific secreted g 0.978 0.932 0.589 1e-148
383932356440 epidermis-specific secreted glycoprotein 0.929 0.893 0.623 1e-148
224114792428 predicted protein [Populus trichocarpa] 0.973 0.962 0.604 1e-147
224114796428 predicted protein [Populus trichocarpa] 0.973 0.962 0.604 1e-147
359493788429 PREDICTED: epidermis-specific secreted g 0.969 0.955 0.605 1e-147
356549665435 PREDICTED: epidermis-specific secreted g 0.962 0.935 0.608 1e-147
359493596434 PREDICTED: epidermis-specific secreted g 0.966 0.942 0.581 1e-146
>gi|224117046|ref|XP_002317461.1| predicted protein [Populus trichocarpa] gi|222860526|gb|EEE98073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/426 (61%), Positives = 320/426 (75%), Gaps = 13/426 (3%)

Query: 5   SAIFSLFFLCSLIFSIANAQVPANERFKFVNEGEFGPFINEYDADYRMIRIFNSPFQLGF 64
           S +FSL  L S+ F IA++ VP +  FKFVNEGEFGP+I+EY  DYR + I  SPFQL F
Sbjct: 2   SKLFSLCLLLSIFF-IAHSTVPPSSTFKFVNEGEFGPYISEYVPDYRPLPIGTSPFQLMF 60

Query: 65  YNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVW 124
           YNTTPNAYTLALR G +R+E L RWVWEANRG PVRENAT + G DGNLVLA+A+G V W
Sbjct: 61  YNTTPNAYTLALRMGTRRSESLTRWVWEANRGNPVRENATLTFGKDGNLVLADADGRVAW 120

Query: 125 QSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLS 184
           Q+NT+NKGV GF++LPNGNMVLHDSKGNFIWQSFD PTDTLLVGQSLRVGG T+LVSR S
Sbjct: 121 QTNTANKGVAGFEVLPNGNMVLHDSKGNFIWQSFDSPTDTLLVGQSLRVGGATRLVSRAS 180

Query: 185 IKENVDGPYSFVMESDRLSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPETDEAFAY 244
            KEN DG YS VMES RL +YYKS N+P+   Y+TF      L+NVT N  P++ +  A 
Sbjct: 181 QKENSDGAYSLVMESKRLVMYYKSPNSPKQYFYYTFNTLQDRLQNVTLNCNPDSYDNSAS 240

Query: 245 QLTLDSSSGG-----------VLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLFDRDSI 293
           ++TLD SSGG            L +    +DGNLRI++Y +KVD    + +F LF RD  
Sbjct: 241 EVTLDLSSGGWSVHARPKFNATLSFLRIGIDGNLRIYSYNNKVDYMAWDVSFNLFSRDGF 300

Query: 294 WETECQLPERCGKFGLCDDNQCVACPTEKGLLGWSKECAPTLVNFCRIAAFHYYKVEGVD 353
            E+ECQLPERCGKFGLC+D+QCVACP+  GLLGWSK C P     C    F+YYK+EGVD
Sbjct: 301 PESECQLPERCGKFGLCEDSQCVACPSPSGLLGWSKNCEPVKPPACGSKDFYYYKLEGVD 360

Query: 354 HYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLKTLTKFPNSTHVGF 413
           H +SKY +G+  ++ +DCG +CS+DC+C+GYFY++ETSKC IA+DL+TLTK  NSTHVG+
Sbjct: 361 HSMSKYASGSVAVKEDDCGKKCSSDCKCMGYFYNKETSKCTIAYDLQTLTKVSNSTHVGY 420

Query: 414 IKVAPQ 419
           IK AP+
Sbjct: 421 IK-APK 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147834750|emb|CAN75015.1| hypothetical protein VITISV_035367 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117048|ref|XP_002317462.1| predicted protein [Populus trichocarpa] gi|222860527|gb|EEE98074.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493598|ref|XP_002283208.2| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|383932356|gb|AFH57275.1| epidermis-specific secreted glycoprotein EP1-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224114792|ref|XP_002316858.1| predicted protein [Populus trichocarpa] gi|222859923|gb|EEE97470.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114796|ref|XP_002316859.1| predicted protein [Populus trichocarpa] gi|222859924|gb|EEE97471.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493788|ref|XP_002285446.2| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549665|ref|XP_003543212.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Glycine max] Back     alignment and taxonomy information
>gi|359493596|ref|XP_002283223.2| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
TAIR|locus:2037508441 AT1G78850 [Arabidopsis thalian 0.628 0.603 0.477 4e-104
TAIR|locus:2037568443 AT1G78860 [Arabidopsis thalian 0.638 0.609 0.473 1.4e-103
TAIR|locus:2037548455 AT1G78830 [Arabidopsis thalian 0.527 0.490 0.572 6.7e-100
UNIPROTKB|Q39688389 EP1 "Epidermis-specific secret 0.529 0.575 0.633 9.8e-97
TAIR|locus:4010713447423 AT1G16905 [Arabidopsis thalian 0.893 0.893 0.440 1.7e-84
TAIR|locus:2037563455 AT1G78820 [Arabidopsis thalian 0.527 0.490 0.533 3.1e-60
TAIR|locus:2116525 821 SD2-5 "S-domain-2 5" [Arabidop 0.851 0.438 0.253 1.9e-19
TAIR|locus:2182603 872 AT5G35370 [Arabidopsis thalian 0.742 0.360 0.252 2.1e-19
TAIR|locus:2088619439 AT3G12000 [Arabidopsis thalian 0.605 0.583 0.306 2.4e-18
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.581 0.291 0.286 2.3e-16
TAIR|locus:2037508 AT1G78850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 656 (236.0 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
 Identities = 135/283 (47%), Positives = 184/283 (65%)

Query:    23 AQVPANERFKFVNEGEFGPFIN-EYDADYRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQ 81
             A+VP +++F+ VNEG +  +   EY+ D R    F+  F+L FYNTTPNAYTLALR G +
Sbjct:    22 AKVPVDDQFRVVNEGGYTDYSPIEYNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNR 81

Query:    82 RNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNKGVVGFKLLPN 141
               E   RWVWEANRG PV+ENAT + G DGNLVLAEA+G +VWQ+NT+NKG VG K+L N
Sbjct:    82 VQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILEN 141

Query:   142 GNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVDGPYSFVMESDR 201
             GNMV++DS G F+WQSFD PTDTLLVGQSL++ G TKLVSRLS   N +GPYS VME+ +
Sbjct:   142 GNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKK 201

Query:   202 LSLYYKSSNAPRPVVYFTFP--VQFSGLKNVTFNSAPETDEAFAYQLT-LDSSS------ 252
             L LYY ++  P+P+ YF +    + +  +++TF +  ++D  +   +  +DS S      
Sbjct:   202 LVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTFQAVEDSDTTWGLVMEGVDSGSKFNVST 261

Query:   253 -------GGVLFWQGQRVDGNLRIFTYYDKVDSQPTEETFTLF 288
                       L +     DGN+R+++Y     S   + T+T F
Sbjct:   262 FLSRPKHNATLSFIRLESDGNIRVWSYSTLATSTAWDVTYTAF 304
GO:0005886 "plasma membrane" evidence=ISM
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2037568 AT1G78860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037548 AT1G78830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q39688 EP1 "Epidermis-specific secreted glycoprotein EP1" [Daucus carota (taxid:4039)] Back     alignment and assigned GO terms
TAIR|locus:4010713447 AT1G16905 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037563 AT1G78820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182603 AT5G35370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39688EP1G_DAUCANo assigned EC number0.53330.80370.8740N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 2e-33
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 3e-33
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 2e-31
cd0109884 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain 6e-09
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information 
 Score =  120 bits (304), Expect = 2e-33
 Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 56  FNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVL 115
             S F+LGF+     +        I         VW ANR  P   + T +L +DGNLV+
Sbjct: 13  SGSLFELGFFKLIMQS---RDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVI 69

Query: 116 AEANGTVVWQSNTSN-KGVVGFKLLPNGNMVLHDSKGNFIWQSFDYP 161
            + +GTVVW SNT+   G     LL +GN+VL+DS GNF+WQSFDYP
Sbjct: 70  YDGSGTVVWSSNTTRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116

The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses. Length = 116
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information
>gnl|CDD|238531 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.96
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.93
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.92
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.64
PF0827666 PAN_2: PAN-like domain; InterPro: IPR013227 PAN do 99.56
cd0109884 PAN_AP_plant Plant PAN/APPLE-like domain; present 99.56
cd0012980 PAN_APPLE PAN/APPLE-like domain; present in N-term 99.33
smart0047378 PAN_AP divergent subfamily of APPLE domains. Apple 98.6
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.57
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.34
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.24
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 98.0
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 95.49
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 95.29
PF0002479 PAN_1: PAN domain This Prosite entry concerns appl 95.04
smart0060594 CW CW domain. 89.32
PF0827771 PAN_3: PAN-like domain; InterPro: IPR006583 PAN do 88.2
cd0109980 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr 87.2
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information 
Probab=99.96  E-value=2.1e-30  Score=220.05  Aligned_cols=103  Identities=51%  Similarity=0.785  Sum_probs=75.9

Q ss_pred             eeEEEEecCCCCCCC---CcEEEEecCCcEEEEecCCcEEEec-CCCCCc--eeEEEEeeCCCeeeecCCCeeEeeeccC
Q 048464           87 YRWVWEANRGKPVRE---NATFSLGTDGNLVLAEANGTVVWQS-NTSNKG--VVGFKLLPNGNMVLHDSKGNFIWQSFDY  160 (423)
Q Consensus        87 ~tvVW~ANr~~Pv~~---~~~l~l~~~G~Lvl~~~~~~~vWst-~~~~~~--~~~~~L~d~GNlVl~~~~~~~lWqSFD~  160 (423)
                      +||||+|||++|+..   ..+|.|+.||+|+|++..++++|++ ++.+.+  +..|+|+|+|||||+|..+.+|||||||
T Consensus         2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~   81 (114)
T PF01453_consen    2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY   81 (114)
T ss_dssp             --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred             cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence            589999999999943   4799999999999999998999999 666554  7889999999999999999999999999


Q ss_pred             CCCcccCCcceeecCe----eEEEEeCCCCCCC
Q 048464          161 PTDTLLVGQSLRVGGV----TKLVSRLSIKENV  189 (423)
Q Consensus       161 PTDTLLPGq~L~~~g~----~~L~S~~S~~dps  189 (423)
                      ||||+||||+|+.+..    ..|+||++.+|||
T Consensus        82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            9999999999976311    2489999999996

Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins Back     alignment and domain information
>smart00473 PAN_AP divergent subfamily of APPLE domains Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>smart00605 CW CW domain Back     alignment and domain information
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 2e-13
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 2e-10
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 6e-12
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 1e-09
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 8e-12
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 2e-10
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 2e-10
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 1e-07
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 3e-10
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 1e-07
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 2e-09
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 3e-07
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 3e-09
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 1e-08
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 6e-09
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 1e-08
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 2e-08
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 2e-07
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 3e-08
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 5e-06
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 8e-04
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 5e-08
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 3e-07
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 5e-07
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 88  RWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNK-GVVGFKLLPNGNMVL 146
             VW +N G   ++     L +DGN V+ +A G  +W S++    G     L  +GN+V+
Sbjct: 38  TSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVI 97

Query: 147 HDSKGNFIWQSFDY 160
           + S    IW +  Y
Sbjct: 98  YGSD---IWSTGTY 108
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 111 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 111 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 100.0
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 99.96
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.77
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.72
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.69
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.68
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.63
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.61
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.6
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.58
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.58
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.47
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.44
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.42
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.31
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.29
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.24
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.18
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.17
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.09
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.05
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.05
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 98.97
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 98.74
2ll3_A82 Micronemal protein 4; cell adhesion; NMR {Toxoplas 94.81
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 89.52
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 88.34
3hms_A101 Hepatocyte growth factor; HGF/SF, hormone/growth f 84.51
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 84.2
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 80.03
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=100.00  E-value=8.5e-37  Score=296.14  Aligned_cols=197  Identities=19%  Similarity=0.211  Sum_probs=142.1

Q ss_pred             ccEEEecCCcEEEEEEeCCCCCeeEEEEEEEecCCCCeeEEEEecCCCCCCC-----CcEEEEecCCcEEE--EecCCcE
Q 048464           50 YRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRE-----NATFSLGTDGNLVL--AEANGTV  122 (423)
Q Consensus        50 ~~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~-----~~~l~l~~~G~Lvl--~~~~~~~  122 (423)
                      +++|+|++|.|+||||..  ++.|+   |+     +.+ |||+|||++||.+     +++|+|+.||+|||  .|++|++
T Consensus        26 ~~~l~S~~g~F~lgf~~~--~~~~l---y~-----~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~G~Lvl~~~~~~~~~   94 (276)
T 3m7h_A           26 GQYLLSPNQRFKLLLQGD--GNLVI---QD-----NGA-TVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRR   94 (276)
T ss_dssp             TCEEECTTSSEEEEECTT--SCEEE---EE-----TTE-EEEECSTTSTTEEEEECCCTTCCSEEEESSSEEEEEGGGTE
T ss_pred             CCEEEcCCCcEEEEEECC--CCeEE---EC-----CCC-eEEECCCCCCcCCcccccceEEEEeCCCcEEEEEeCCCCCE
Confidence            678999999999999943  34444   54     235 9999999999987     57899999999999  7888999


Q ss_pred             EEecCCCC------CceeEEEEeeCCCeeeecCCCeeEeeeccCCCCcccCCcc----eeecCeeEEEEeCCCCCCCCcc
Q 048464          123 VWQSNTSN------KGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQS----LRVGGVTKLVSRLSIKENVDGP  192 (423)
Q Consensus       123 vWst~~~~------~~~~~~~L~d~GNlVl~~~~~~~lWqSFD~PTDTLLPGq~----L~~~g~~~L~S~~S~~dps~G~  192 (423)
                      ||+++++.      ..++.|+|+|+|||||+|  +.+||||  ||||||||||+    |..|  ++|   ++.+||++|.
T Consensus        95 vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~--~~~lWqS--~ptdtlLpg~~~~~~l~~g--~~L---~S~~dps~G~  165 (276)
T 3m7h_A           95 VWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD--SLALWNG--TPAIPLVPGAIDSLLLAPG--SEL---VQGVVYGAGA  165 (276)
T ss_dssp             EEEECCCCCCCTTHHHHEEEEECTTSCEEEEE--EEEEEES--CTTSCCCCSCTTCEEECSS--EEE---CTTCEEEETT
T ss_pred             EEEeCCCcccccccCCceEEEEeCCCCEEecC--CceeeCc--ccccccccccccccccccC--ccc---ccCCCCCCce
Confidence            99999865      235789999999999998  7899999  99999999999    5543  567   6789999999


Q ss_pred             eEEEecCCc-cceeecCCCCCCceEEEeccccCCCcceeEEeecCC---CCccceEEEEEEeecCCceeEEEEccCCcEE
Q 048464          193 YSFVMESDR-LSLYYKSSNAPRPVVYFTFPVQFSGLKNVTFNSAPE---TDEAFAYQLTLDSSSGGVLFWQGQRVDGNLR  268 (423)
Q Consensus       193 fsl~l~~~g-l~~~~~~~~~~~~~~YW~~~~~~~~~~~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~rld~dG~lr  268 (423)
                      |+|+|++++ +.++ ..  ..  ..||+.++.......+.+...+.   .+... ..+..+..........+++.||+|+
T Consensus       166 fsl~l~~dGnlvLy-~~--~~--~~yW~Sgt~~~~~~~l~l~~dGnLvl~d~~~-~~vWsS~t~~~~~~rl~Ld~dGnLv  239 (276)
T 3m7h_A          166 SKLVFQGDGNLVAY-GP--NG--AATWNAGTQGKGAVRAVFQGDGNLVVYGAGN-AVLWHSHTGGHASAVLRLQANGSIA  239 (276)
T ss_dssp             EEEEECTTSCEEEE-CT--TS--SEEEECCCTTTTCCEEEECTTSCEEEECTTS-CEEEECSCTTCTTCEEEECTTSCEE
T ss_pred             EEEeecCCceEEEE-eC--CC--eEEEECCCCCCccEEEEEcCCCeEEEEeCCC-cEEEEecCCCCCCEEEEEcCCccEE
Confidence            999999887 3442 21  22  58999665432222334432221   01100 1122222222223445569999999


Q ss_pred             EEEE
Q 048464          269 IFTY  272 (423)
Q Consensus       269 ~y~~  272 (423)
                      +|.|
T Consensus       240 ly~~  243 (276)
T 3m7h_A          240 ILDE  243 (276)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9987
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 423
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 5e-16
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 2e-14
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 8e-07
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 6e-12
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 1e-05
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 1e-11
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 2e-08
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 2e-07
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 2e-07
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 2e-05
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 71.1 bits (174), Expect = 5e-16
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 57  NSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLA 116
             P+             L L             VW +N G   ++     L +DGN V+ 
Sbjct: 18  VEPYHFIM----QEDCNLVLYDH-------STSVWASNTGILGKKGCKAVLQSDGNFVVY 66

Query: 117 EANGTVVWQSNTS-NKGVVGFKLLPNGNMVLHDSKGNFIWQSFDY 160
           +A G  +W S++    G     L  +GN+V++ S    IW +  Y
Sbjct: 67  DAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYGSD---IWSTGTY 108
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.73
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.72
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.69
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.65
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.59
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.44
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.13
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.08
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.05
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.0
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 98.9
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.77
d2qj2a191 Hepatocyte growth factor {Human (Homo sapiens) [Ta 90.0
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.73  E-value=1.4e-17  Score=137.11  Aligned_cols=94  Identities=27%  Similarity=0.445  Sum_probs=75.7

Q ss_pred             cEEEecCCcEEEEEEeCCCCCeeEEEEEEEecCCCCeeEEEEecCCCCCCCCcEEEEecCCcEEEEecCCcEEEecCCCC
Q 048464           51 RMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSN  130 (423)
Q Consensus        51 ~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~~~~l~l~~~G~Lvl~~~~~~~vWst~~~~  130 (423)
                      +.|.  +|.|.|+|+..  ++  |.++..       .++||+||++.|+...+.|.|++||+|||+|++|.+||+++++.
T Consensus        14 ~~l~--~g~~~l~~q~d--gn--Lvl~~~-------~~~vW~ant~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~s~t~~   80 (109)
T d1kj1a_          14 QSLD--VEPYHFIMQED--CN--LVLYDH-------STSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVR   80 (109)
T ss_dssp             CEEE--ETTEEEEECTT--SC--EEEEET-------TEEEEECCCCCTTCCCCEEEECTTSCEEEECSSSCEEEECCCCC
T ss_pred             CEEE--eCCEEEEecCC--Ce--EEEEeC-------CEEEEEeCCCCCCceeEEEEEcCCceEEEEeCCCcEEEEEeeEC
Confidence            3454  47899999763  33  334321       36799999999998888999999999999999999999998863


Q ss_pred             -CceeEEEEeeCCCeeeecCCCeeEeeeccC
Q 048464          131 -KGVVGFKLLPNGNMVLHDSKGNFIWQSFDY  160 (423)
Q Consensus       131 -~~~~~~~L~d~GNlVl~~~~~~~lWqSFD~  160 (423)
                       .+...|+|+|+|||||+++   .+|||+-|
T Consensus        81 ~~~~~~l~L~ddGNlvly~~---~~W~S~t~  108 (109)
T d1kj1a_          81 GNGNYVLVLQEDGNVVIYGS---DIWSTGTY  108 (109)
T ss_dssp             CSSCCEEEECTTSCEEEECC---EEEECCCC
T ss_pred             CCCCEEEEEeCCCcEEEECC---CEecCCCc
Confidence             4456799999999999963   69999865
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure