Citrus Sinensis ID: 048471

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTGGLI
ccccccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEcccccccEEEEEcccccccccEEEEEEccEEEEcccccccccccEEEEccccccccEEEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccEEcccccccccccccccccc
cEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHcccHHHHccccccccccccccccccc
TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQncniyprlplngqfiaitaqsrtdpnqntgtsihnctitasadlassnqtvqtylgrpwkeysRTVYMQSFMDslinpagwhewsgDFALATLYYAeynntgpgsdttnrvtwpgyqvinatdaanftvsnfllgdnwlpqtavpytggli
TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITasadlassnQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFllgdnwlpqtavpytggli
TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTGGLI
***THSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITA************SIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYT****
TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTGGLI
TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTGGLI
TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTG*LI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTGGLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query183 2.2.26 [Sep-21-2011]
O22256560 Probable pectinesterase/p yes no 1.0 0.326 0.770 1e-84
Q8RXK7573 Probable pectinesterase/p no no 1.0 0.319 0.759 5e-84
Q9SRX4579 Probable pectinesterase/p no no 1.0 0.316 0.759 8e-83
O04887510 Pectinesterase 2 OS=Citru no no 0.989 0.354 0.677 1e-70
Q94CB1619 Probable pectinesterase/p no no 1.0 0.295 0.622 4e-68
Q9FF77624 Probable pectinesterase/p no no 1.0 0.293 0.617 5e-67
O48711547 Probable pectinesterase/p no no 0.994 0.332 0.587 2e-64
P85076321 Pectinesterase OS=Actinid N/A no 0.967 0.551 0.651 3e-64
O22149511 Probable pectinesterase/p no no 0.983 0.352 0.606 2e-63
P83947545 Pectinesterase/pectineste N/A no 0.994 0.333 0.622 4e-63
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function desciption
 Score =  311 bits (798), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 161/183 (87%)

Query: 1   TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
           TLYTHSLRQFYRECD+YGTVDFIFGNAAVVLQNCN+YPR P  GQ   +TAQ RTDPNQN
Sbjct: 377 TLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQSNEVTAQGRTDPNQN 436

Query: 61  TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
           TGT+IH CTI  + DLA+SN TV+TYLGRPWKEYSRTV MQ+++D  + P+GW+ WSGDF
Sbjct: 437 TGTAIHGCTIRPADDLATSNYTVKTYLGRPWKEYSRTVVMQTYIDGFLEPSGWNAWSGDF 496

Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTG 180
           AL+TLYYAEYNNTGPGSDTTNRVTWPGY VINATDA+NFTV+NFL+G+ W+ QT VP+ G
Sbjct: 497 ALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDASNFTVTNFLVGEGWIGQTGVPFVG 556

Query: 181 GLI 183
           GLI
Sbjct: 557 GLI 559
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function description
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function description
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
224128446 560 predicted protein [Populus trichocarpa] 1.0 0.326 0.863 6e-92
356570974 610 PREDICTED: probable pectinesterase/pecti 1.0 0.3 0.863 4e-91
356503911 615 PREDICTED: LOW QUALITY PROTEIN: probable 1.0 0.297 0.857 1e-90
119507465 564 pectin methylesterase 3 [Pyrus communis] 1.0 0.324 0.863 3e-89
255564230 566 Pectinesterase-2 precursor, putative [Ri 1.0 0.323 0.836 1e-88
224068368 558 predicted protein [Populus trichocarpa] 1.0 0.327 0.836 3e-88
359479963 556 PREDICTED: probable pectinesterase/pecti 1.0 0.329 0.830 6e-88
297743912 566 unnamed protein product [Vitis vinifera] 1.0 0.323 0.830 7e-88
357442409 556 Pectinesterase [Medicago truncatula] gi| 1.0 0.329 0.830 4e-87
356536715 559 PREDICTED: probable pectinesterase/pecti 1.0 0.327 0.808 3e-86
>gi|224128446|ref|XP_002320332.1| predicted protein [Populus trichocarpa] gi|222861105|gb|EEE98647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  341 bits (875), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 158/183 (86%), Positives = 169/183 (92%)

Query: 1   TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
           TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCN+YPRLP++GQF AITAQ RTDPNQN
Sbjct: 378 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLYPRLPMSGQFNAITAQGRTDPNQN 437

Query: 61  TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
           TGTSIHNC I A+ DLASSN TVQTYLGRPWK+YSRTVYMQSFMD LINPAGW  WSGDF
Sbjct: 438 TGTSIHNCNIKAADDLASSNATVQTYLGRPWKQYSRTVYMQSFMDGLINPAGWQIWSGDF 497

Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTG 180
           AL T YYAEYNNTGPGSDTTNRVTWPG+ VINATDA NFTVS+FLLG++WLPQTAVP++ 
Sbjct: 498 ALNTSYYAEYNNTGPGSDTTNRVTWPGFHVINATDAVNFTVSSFLLGNDWLPQTAVPFSS 557

Query: 181 GLI 183
           GLI
Sbjct: 558 GLI 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356570974|ref|XP_003553657.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356503911|ref|XP_003520743.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|119507465|dbj|BAF42040.1| pectin methylesterase 3 [Pyrus communis] Back     alignment and taxonomy information
>gi|255564230|ref|XP_002523112.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537674|gb|EEF39297.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068368|ref|XP_002302726.1| predicted protein [Populus trichocarpa] gi|222844452|gb|EEE81999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359479963|ref|XP_002268492.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743912|emb|CBI36882.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357442409|ref|XP_003591482.1| Pectinesterase [Medicago truncatula] gi|357442459|ref|XP_003591507.1| Pectinesterase [Medicago truncatula] gi|355480530|gb|AES61733.1| Pectinesterase [Medicago truncatula] gi|355480555|gb|AES61758.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356536715|ref|XP_003536881.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 1.0 0.326 0.770 3.7e-80
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 1.0 0.319 0.759 2.3e-78
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 1.0 0.316 0.759 3.8e-78
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 1.0 0.295 0.622 6e-64
TAIR|locus:2175334624 AT5G04970 [Arabidopsis thalian 1.0 0.293 0.617 2e-63
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.983 0.352 0.606 1.5e-60
TAIR|locus:2066195547 AT2G26440 [Arabidopsis thalian 0.994 0.332 0.587 1.9e-60
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.994 0.304 0.617 2.2e-59
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.989 0.308 0.609 2.8e-57
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.994 0.339 0.578 1.3e-54
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 141/183 (77%), Positives = 161/183 (87%)

Query:     1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
             TLYTHSLRQFYRECD+YGTVDFIFGNAAVVLQNCN+YPR P  GQ   +TAQ RTDPNQN
Sbjct:   377 TLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQSNEVTAQGRTDPNQN 436

Query:    61 TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
             TGT+IH CTI  + DLA+SN TV+TYLGRPWKEYSRTV MQ+++D  + P+GW+ WSGDF
Sbjct:   437 TGTAIHGCTIRPADDLATSNYTVKTYLGRPWKEYSRTVVMQTYIDGFLEPSGWNAWSGDF 496

Query:   121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTG 180
             AL+TLYYAEYNNTGPGSDTTNRVTWPGY VINATDA+NFTV+NFL+G+ W+ QT VP+ G
Sbjct:   497 ALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDASNFTVTNFLVGEGWIGQTGVPFVG 556

Query:   181 GLI 183
             GLI
Sbjct:   557 GLI 559
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22256PME20_ARATH3, ., 1, ., 1, ., 1, 10.77041.00.3267yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-134
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-114
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 2e-98
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 5e-92
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 3e-91
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-90
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-89
PLN02314586 PLN02314, PLN02314, pectinesterase 9e-84
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 5e-82
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 5e-82
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 4e-78
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 5e-77
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 6e-77
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 7e-77
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 9e-77
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-73
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 7e-73
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 2e-72
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 3e-71
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-66
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 4e-64
PLN02197588 PLN02197, PLN02197, pectinesterase 2e-44
PLN02432293 PLN02432, PLN02432, putative pectinesterase 2e-38
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-36
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 3e-36
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-34
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-31
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 5e-29
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-28
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 7e-28
PLN02634359 PLN02634, PLN02634, probable pectinesterase 3e-26
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-24
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 7e-15
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-05
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  387 bits (996), Expect = e-134
 Identities = 157/183 (85%), Positives = 166/183 (90%)

Query: 1   TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
           TLYTHSLRQFYRECDIYGTVDFIFGNAAVV QNCN+YPRLP+ GQF  ITAQ RTDPNQN
Sbjct: 383 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQN 442

Query: 61  TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
           TGTSI NCTI A+ DLASSN TV+TYLGRPWKEYSRTV MQS++D LI+PAGW  WSGDF
Sbjct: 443 TGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGLIDPAGWMPWSGDF 502

Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFTVSNFLLGDNWLPQTAVPYTG 180
           AL+TLYYAEYNNTGPGSDTTNRVTWPGY VINATDAANFTVSNFLLGD WLPQT VP+T 
Sbjct: 503 ALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLLGDGWLPQTGVPFTS 562

Query: 181 GLI 183
           GLI
Sbjct: 563 GLI 565

Length = 566
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 183
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02314586 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02634359 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
PLN02773317 pectinesterase 96.3
PRK10531422 acyl-CoA thioesterase; Provisional 96.25
PLN02480343 Probable pectinesterase 96.16
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.98
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.8
PLN02176340 putative pectinesterase 95.72
PLN02634359 probable pectinesterase 95.52
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.49
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.41
PLN02671359 pectinesterase 95.36
PLN02916502 pectinesterase family protein 95.23
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.2
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.19
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.08
PLN02432293 putative pectinesterase 95.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.0
PLN02665366 pectinesterase family protein 94.96
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.85
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.85
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.8
PLN02682369 pectinesterase family protein 94.8
PLN02314586 pectinesterase 94.7
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.7
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.62
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.48
PLN02301548 pectinesterase/pectinesterase inhibitor 94.46
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.37
PLN02497331 probable pectinesterase 94.35
PLN02304379 probable pectinesterase 94.31
PLN02197588 pectinesterase 94.3
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.28
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.2
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.18
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.95
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.4e-64  Score=458.80  Aligned_cols=183  Identities=63%  Similarity=1.178  Sum_probs=172.8

Q ss_pred             CceeccCceeeEccEEeeeeeeEecCcceeeEecEEEecCCCCCCceEEEecCCCCCCCCceEEEeeeEEeecCCcccCC
Q 048471            1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSN   80 (183)
Q Consensus         1 TLy~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~c~i~~~~~~~~~~~~ItA~~~~~~~~~~G~vf~~c~i~~~~~~~~~~   80 (183)
                      |||++.+||||++|+|+|+||||||+|+|+||+|+|+++.+.+++.++||||+|+++++++||||+||+|++++++.+..
T Consensus       356 TLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~~~~~~~  435 (538)
T PLN03043        356 TLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAPDLAMDP  435 (538)
T ss_pred             ccccCCCcEEEEeeEEeeccceEeecceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCcccccc
Confidence            89999999999999999999999999999999999999987767789999999999999999999999999988764443


Q ss_pred             CcceEEEeccCCCCCcEEEEecCCCCccCCCCCCCCCCCCcccccEEEEecccCCCCCCCCccccCCcccCCHHHHhcch
Q 048471           81 QTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVINATDAANFT  160 (183)
Q Consensus        81 ~~~~~yLGRpW~~~s~~v~~~~~l~~~I~~~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~~~~~Ls~~eAa~yt  160 (183)
                      ...++||||||++|+|||||+|+|+++|+|+||.+|++....++++|+||+|+|||+++++||+|+++|+|+.+||++||
T Consensus       436 ~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~s~Rv~w~~~~~l~~~ea~~ft  515 (538)
T PLN03043        436 NSTMNFLGRPWKPYSRTVYMQSYIGDLIQPVGWLEWNGTVGLDTIYYGEFDNYGPGANTSMRVQWPGYNLMNLAQAMNFT  515 (538)
T ss_pred             cccceeccCCCCCCceEEEEecccCCeecccccCCCCCCCCcCceEEEEecccCCCCCcCCCccccccccCCHHHHHHHH
Confidence            34579999999999999999999999999999999998888899999999999999999999999998899999999999


Q ss_pred             hhccccCCCCccCCCCCCCCCCC
Q 048471          161 VSNFLLGDNWLPQTAVPYTGGLI  183 (183)
Q Consensus       161 ~~~~~~g~~W~p~~~~p~~~~~~  183 (183)
                      ..+||+|+.|+|.++|||.+||+
T Consensus       516 ~~~fi~g~~Wl~~~gv~~~~gl~  538 (538)
T PLN03043        516 VYNFTMGDTWLPQTDIPFYGGLL  538 (538)
T ss_pred             HHhccCCCCcCCCCCCcccCCCC
Confidence            99999999999999999999985

>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-58
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 4e-57
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 6e-10
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 7e-10
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 7e-10
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-05
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/183 (59%), Positives = 124/183 (67%), Gaps = 1/183 (0%)
Query: 1   TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
           TLY HS RQFYR+  + GTVDFIFGNAAVV Q C +  R P   Q   +TAQ RTDPNQ 
Sbjct: 133 TLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQA 192
Query: 61  TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
           TGTSI  C I AS+DL    +   TYLGRPWKEYSRTV M+S++  LINPAGW EW GDF
Sbjct: 193 TGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDF 252
Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVI-NATDAANFTVSNFLLGDNWLPQTAVPYT 179
           AL TLYY E+ N GPG+ T+ RV WPGY VI +   A  FTV+  + G +WL  T V Y 
Sbjct: 253 ALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYV 312
Query: 180 GGL 182
            GL
Sbjct: 313 DGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-100
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 2e-99
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 7e-72
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-66
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 6e-50
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  291 bits (746), Expect = e-100
 Identities = 108/183 (59%), Positives = 124/183 (67%), Gaps = 1/183 (0%)

Query: 1   TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
           TLY HS RQFYR+  + GTVDFIFGNAAVV Q C +  R P   Q   +TAQ RTDPNQ 
Sbjct: 133 TLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQA 192

Query: 61  TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
           TGTSI  C I AS+DL    +   TYLGRPWKEYSRTV M+S++  LINPAGW EW GDF
Sbjct: 193 TGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDF 252

Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVI-NATDAANFTVSNFLLGDNWLPQTAVPYT 179
           AL TLYY E+ N GPG+ T+ RV WPGY VI +   A  FTV+  + G +WL  T V Y 
Sbjct: 253 ALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYV 312

Query: 180 GGL 182
            GL
Sbjct: 313 DGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.04
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.97
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.82
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.69
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.49
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 93.55
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.3e-62  Score=423.16  Aligned_cols=183  Identities=59%  Similarity=1.030  Sum_probs=169.4

Q ss_pred             CceeccCceeeEccEEeeeeeeEecCcceeeEecEEEecCCCCCCceEEEecCCCCCCCCceEEEeeeEEeecCCcccCC
Q 048471            1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSN   80 (183)
Q Consensus         1 TLy~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~c~i~~~~~~~~~~~~ItA~~~~~~~~~~G~vf~~c~i~~~~~~~~~~   80 (183)
                      |||++++||||++|+|+|+||||||+|+|+||+|+|+++.+..++.++||||+|+++.+++||||+||+|++++++.+..
T Consensus       133 TLy~~~~r~~~~~c~I~G~vDFIfG~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~  212 (317)
T 1xg2_A          133 TLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVL  212 (317)
T ss_dssp             CEEECSSEEEEESCEEEESSSCEEECCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGT
T ss_pred             ceeecCccEEEEeeEEEeceeEEcCCceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccc
Confidence            89999999999999999999999999999999999999887666779999999999999999999999999988654322


Q ss_pred             CcceEEEeccCCCCCcEEEEecCCCCccCCCCCCCCCCCCcccccEEEEecccCCCCCCCCccccCCcccC-CHHHHhcc
Q 048471           81 QTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGYQVI-NATDAANF  159 (183)
Q Consensus        81 ~~~~~yLGRpW~~~s~~v~~~~~l~~~I~~~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~~~~~L-s~~eAa~y  159 (183)
                      ...++||||||++++|+||++|+|+++|+|+||.+|++..+.++++|+||+|+|||+++++||+|+++++| +++||++|
T Consensus       213 ~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~  292 (317)
T 1xg2_A          213 KEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPF  292 (317)
T ss_dssp             TTSCEEEECCSSTTCEEEEESCEECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGG
T ss_pred             cceeEEeecccCCCceEEEEecccCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHh
Confidence            33489999999999999999999999999999999998888889999999999999999999999987777 46999999


Q ss_pred             hhhccccCCCCccCCCCCCCCCCC
Q 048471          160 TVSNFLLGDNWLPQTAVPYTGGLI  183 (183)
Q Consensus       160 t~~~~~~g~~W~p~~~~p~~~~~~  183 (183)
                      +..+||+|++|+|.+++||..||.
T Consensus       293 t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          293 TVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             SHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             hHHhhcCCCCCcCCCCcccccccc
Confidence            999999998999999999999984
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 183
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 5e-84
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 5e-47
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  248 bits (635), Expect = 5e-84
 Identities = 105/183 (57%), Positives = 131/183 (71%), Gaps = 1/183 (0%)

Query: 1   TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
           +LY HS RQF+  C I GTVDFIFGNAAVVLQ+C+I+ R P +GQ   +TAQ RTDPNQN
Sbjct: 137 SLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQN 196

Query: 61  TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
           TG  I    I A++DL     +  TYLGRPWKEYSRTV MQS + ++INPAGW  W G+F
Sbjct: 197 TGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNF 256

Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVI-NATDAANFTVSNFLLGDNWLPQTAVPYT 179
           AL TLYY EY NTG G+ T+ RVTW G++VI ++T+A  FT  +F+ G +WL  T  P++
Sbjct: 257 ALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFS 316

Query: 180 GGL 182
            GL
Sbjct: 317 LGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.33
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.23
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=2.5e-64  Score=433.32  Aligned_cols=182  Identities=57%  Similarity=0.990  Sum_probs=170.1

Q ss_pred             CceeccCceeeEccEEeeeeeeEecCcceeeEecEEEecCCCCCCceEEEecCCCCCCCCceEEEeeeEEeecCCcccCC
Q 048471            1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGTSIHNCTITASADLASSN   80 (183)
Q Consensus         1 TLy~~~gr~yf~~c~I~G~vDFIfG~g~a~f~~c~i~~~~~~~~~~~~ItA~~~~~~~~~~G~vf~~c~i~~~~~~~~~~   80 (183)
                      |||+++|||||++|+|||+||||||+|+|+||+|+|+++.+..++.++||||+|+++.+++||||++|+|++++++.+..
T Consensus       137 TL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~  216 (319)
T d1gq8a_         137 SLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQ  216 (319)
T ss_dssp             CEEECSSEEEEESCEEEESSSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGG
T ss_pred             eeEECCCCEEEEeeEEEeeccEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccc
Confidence            89999999999999999999999999999999999999987667789999999999999999999999999998764433


Q ss_pred             CcceEEEeccCCCCCcEEEEecCCCCccCCCCCCCCCCCCcccccEEEEecccCCCCCCCCccccCCc-ccCCHHHHhcc
Q 048471           81 QTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALATLYYAEYNNTGPGSDTTNRVTWPGY-QVINATDAANF  159 (183)
Q Consensus        81 ~~~~~yLGRpW~~~s~~v~~~~~l~~~I~~~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~~~-~~Ls~~eAa~y  159 (183)
                      ...++||||||+++++|||++|+|+++|+|+||.+|+...+.++++|+||+|+|||+++++||+|+++ ++|+++||++|
T Consensus       217 ~~~~~yLGRpW~~~s~vvf~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~f  296 (319)
T d1gq8a_         217 SSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF  296 (319)
T ss_dssp             GGSCEEEECCSSTTCEEEEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTT
T ss_pred             cccceeccCCCCCcceEEEEecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhh
Confidence            44579999999999999999999999999999999998888899999999999999999999999864 46899999999


Q ss_pred             hhhccccCCCCccCCCCCCCCCC
Q 048471          160 TVSNFLLGDNWLPQTAVPYTGGL  182 (183)
Q Consensus       160 t~~~~~~g~~W~p~~~~p~~~~~  182 (183)
                      +.++||+|++|+|.++|||..||
T Consensus       297 t~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         297 TPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             SHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             hHHhhcCCCcccccCCCccCCCC
Confidence            99999999899999999999987
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure