Citrus Sinensis ID: 048474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------96
MADQYPNESSSTGNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNSGIQFSTLSNIHAQPQQGNETAGSGGHVGNQSQVGNQAQSGQPYPGQLSSPPVVQIPQTAGAVPFPSLNVPIPDSLNTISEFMNHMEQTLSQNGYQPNTSSTSNEEVPRPELPSNERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPSSNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRASNGDGVQGERRNATGSTELAGSGSVRVLPVRNIIAAAVPSRPTAAAISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQIRNFVGNMQGENQVPSAEVMSAGQNLSDGSMVGSYAGNEQPSSTPVNRVGELRVSLSGNTPESESQKALPEGDHVRTNEGMGSVLSSKDAPSSSSGGAQSSSSGESEDNSGNALGSIEKQDLQEGSKAAPLGLGLGGLERKRRPRQPKTPVKSSDGGMSNAPLDQNLNSTSVGQHLLQTLASSSSVRNGIDANELSFGQLPVVERVTESKQSGGQDIDSQVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSGLGGGWAGGIDLSRMVQQMMPVVSQALGRGSTPQPLSGTPQCSERRSSGVDNPDDPIQIGIQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRLKGDSGRDC
cccccccccccccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccc
ccccccccccccccccccccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEccccccccEEccccEEEEccccccccEcccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEccccccccccccccccccccccccccccccccccccEcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccc
madqypnessstgnvsgkssDAIVEINVKTLESQVYsfqvdknipvtLFKEKiandigvpvgqqrlifrgkvlkdehllseyhvenghtlhlvirqpaqsqpssdassgetngnnvtggseananaprgrmgqvSHSVLLGtfnvgdqgegiapDLTRVIGALINslgiggqtpatgsnsgiqfstlsnihaqpqqgnetagsgghvgnqsqvgnqaqsgqpypgqlssppvvqipqtagavpfpslnvpipdslNTISEFMNHMEQtlsqngyqpntsstsneevprpelpsnerglptpEALNIVLQRAQRLLSGHTVAALSHIAGrleqegassdpnirgqIQAESVQIGFAMQHLGSLLLELGRVILTLrmgqspvefsvnagpavyispsgpnpimvqpfpiqtsslfggsvpssnpmnigpvgvghaprninihihagtaLAPVLstigtrasngdgvqgerrnatgstelagsgsvrvlpVRNIIAaavpsrptaaaistvaqpgpglsvpqlsansglLSSVVDQVNSQIRNFVgnmqgenqvpsaevmsagqnlsdgsmvgsyagneqpsstpvnrvgelrvslsgntpesesqkalpegdhvrtnegmgsvlsskdapssssggaqssssgesednsgnalgsiekqdlqegskaaplglglgglerkrrprqpktpvkssdggmsnapldqnlnstsVGQHLLQTLAssssvrngidanelsfgqlpVVERVTeskqsggqdidsQVDTASAISEVLRSTElngllsgfsqqtgigspDVLRNMLQQltqspqvlNTVNQIAQQidtqdvgnmfsglgggwaggiDLSRMVQQMMPVVsqalgrgstpqplsgtpqcserrssgvdnpddpiqIGIQQVVQRiehldppgEVFRAVVQNAgqlhcngsgrEDLVSELCSDEDLAEEYAEILRSDIYqrlkgdsgrdc
madqypnessstgnvsgkssDAIVEINVKTLESQVYSFQVDKNIPVTLFKEkiandigvpvgQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNSGIQFSTLSNIHAQPQQGNETAGSGGHVGNQSQVGNQAQSGQPYPGQLSSPPVVQIPQTAGAVPFPSLNVPIPDSLNTISEFMNHMEQTLSQNGYQPNTSSTSNEEVPRPELPSNERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPSSNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRAsngdgvqgerRNATgstelagsgsvrvlPVRNIIAAAVPSRPTAAAISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQIRNFVGNMQGENQVPSAEVMSAGQNLSDGSMVGSYAGNeqpsstpvnrVGELRVSLSgntpesesqkalpegdhvrtNEGMGSvlsskdapssssggaqssssgesedNSGNALGSIEKQDLQEGSKAaplglglgglerkrrprqpktpvkssdggmsnAPLDQNLNSTSVGQHLLQTLASSSSVRNGIDANELSFGQLPVVERVTEskqsggqdidsqVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSGLGGGWAGGIDLSRMVQQMMPVVSQALGRGSTPQPLSGTPQCSERRSSGVDNPDDPIQIGIQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEIlrsdiyqrlkgdsgrdc
MADQYPNEssstgnvsgkssDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRqpaqsqpssdassGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNSGIQFSTLSNIHAQPQQGNETAGSGGHVGNQSQVGNQAQSGQPYPGQLSSPPVVQIPQTAGAVPFPSLNVPIPDSLNTISEFMNHMEQTLSQNGYQPNTSSTSNEEVPRPELPSNERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPSSNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRASNGDGVQGERRNATGSTELAGSGSVRVLPVRNIIaaavpsrptaaaISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQIRNFVGNMQGENQVPSAEVMSAGQNLSDGSMVGSYAGNEQPSSTPVNRVGELRVSLSGNTPESESQKALPEGDHVRTNEGMGsvlsskdapssssggaqssssgesednsgnaLGSIEKQDLQEGSKAAPlglglgglERKRRPRQPKTPVKSSDGGMSNAPLDQNLNSTSVGQHLLQTLASSSSVRNGIDANELSFGQLPVVERVTESKQSGGQDIDSQVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSglgggwaggIDLSRMVQQMMPVVSQALGRGSTPQPLSGTPQCSERRSSGVDNPDDPiqigiqqvvqriEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRLKGDSGRDC
*********************AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI*****************************************HSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGG************************************************************************************************************************************LNIVLQRAQRLLSGHTVAALSHIA*****************IQAESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISP*****IMVQPFPI*****************IGPVGVGHAPRNINIHIHAGTALAPVLSTIG***************************VRVLPVRNIIAAAVP**************************************************************************************************************************************************************************************************************************************************************************************LL*************VLRNMLQQLT*SPQVLNTVNQIAQQIDTQDVGNMFSGLGGGWAGGIDLSRMVQQM*************************************IQIGIQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIY***********
*************************INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV**************************************************************************************************************************************************************************************************************************************SHIAGRLEQ********************GFAMQHLGSLLLELG**************************************************************************************************************************NI***********************************************************************************************************************************************************************************************************************************************************************************VLRSTELNGLLSGF**************MLQQLTQSPQVLNTVNQIA**********************IDLSRMVQQMMPVV*****************************************************VFRAVVQNAG**********DLVSELCSDEDLAEEYAEILRSD*************
*******************SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ******************NVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNSGIQFSTLSNIHAQP************VGNQSQV*************LSSPPVVQIPQTAGAVPFPSLNVPIPDSLNTISEFMNHMEQTLS***********************NERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPSSNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRAS***********ATGSTELAGSGSVRVLPVRNIIAAAVPSRPTAAAISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQIRNFVGNMQGENQVPSAEVMSAGQNLSDGSMVGS************NRVGELRVS****************GDHVRTNEGM******************************NALGSIEKQDLQEGSKAAPLGLGLGGLERK***************GMSNAPLDQNLNSTSVGQHLLQTLASSSSVRNGIDANELSFGQLPVVER**************QVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSGLGGGWAGGIDLSRMVQQMMPVVSQAL************************NPDDPIQIGIQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRL********
*********************AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP**********************************GQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGI*************************************************************************PFPSLNVPIPDSLNTISEFMNHMEQTLSQN*************************LPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPSSNPMNIGPVGVGHAPRNINIHIHAGT************************************SVRVLPVRNIIAAAVPSRPTA*******Q***************LLSSVVDQ*******************************************************************************************************************************************************************************************************************************QVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSGL****AGGIDLSRMVQQMMPVVS*AL*****************************IQIGIQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRLKG******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MADQYPNESSSTGNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNSGIQFSTLSNIHAQPQQGNETAGSGGHVGNQSQVGNQAQSGQPYPGQLSSPPVVQIPQTAGAVPFPSLNVPIPDSLNTISEFMNHMEQTLSQNGYQPNTSSTSNEEVPRPELPSNERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPSSNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRASNGDGVQGERRNATGSTELAGSGSVRVLPVRNIIAAAVPSRPTAAAISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQIRNFVGNMQGENQVPSAEVMSAGQNLSDGSMVGSYAGNEQPSSTPVNRVGELRVSLSGNTPESESQKALPEGDHVRTNEGMGSVLSSKDAPSSSSGGAQSSSSGESEDNSGNALGSIEKQDLQEGSKAAPLGLGLGGLERKRRPRQPKTPVKSSDGGMSNAPLDQNLNSTSVGQHLLQTLASSSSVRNGIDANELSFGQLPVVERVTESKQSGGQDIDSQVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSGLGGGWAGGIDLSRMVQQMMPVVSQALGRGSTPQPLSGTPQCSERRSSGVDNPDDPIQIGIQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRLKGDSGRDC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query958 2.2.26 [Sep-21-2011]
Q9Z1R2 1154 Large proline-rich protei yes no 0.147 0.122 0.366 4e-15
P46379 1132 Large proline-rich protei yes no 0.143 0.121 0.367 6e-15
Q6MG49 1146 Large proline-rich protei yes no 0.148 0.123 0.366 6e-15
A7X5R6 1088 Large proline-rich protei yes no 0.133 0.117 0.386 8e-14
A5D9M6 1128 Large proline-rich protei yes no 0.137 0.117 0.35 9e-14
A4IH17 1129 Large proline-rich protei yes no 0.115 0.098 0.389 2e-13
Q9YHD3 1135 Large proline-rich protei N/A no 0.115 0.097 0.379 3e-13
Q6PA26 1116 Large proline-rich protei N/A no 0.115 0.099 0.364 1e-11
A3KPW9 1160 Large proline-rich protei no no 0.075 0.062 0.479 2e-11
Q9NIF3523 Ubiquilin OS=Dictyosteliu yes no 0.074 0.135 0.394 7e-10
>sp|Q9Z1R2|BAG6_MOUSE Large proline-rich protein BAG6 OS=Mus musculus GN=Bag6 PE=1 SV=1 Back     alignment and function desciption
 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 9/150 (6%)

Query: 8   ESSSTGNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI 67
           E S + + + +  D++ E+ VKTL+SQ  +F V   + V  FKE IA  + +P  +QRLI
Sbjct: 2   EPSDSASTAMEEPDSL-EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 60

Query: 68  FRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAP 127
           ++G+VL+D+  L EY+V  G  +HLV R P Q+Q  S ASSG  + +   GG+       
Sbjct: 61  YQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQTQLPSGASSGTGSASATHGGAPLPGT-- 117

Query: 128 RGRMGQV-----SHSVLLGTFNVGDQGEGI 152
           RG    V     +  V++GTFN+   G  +
Sbjct: 118 RGPGASVHDRNANSYVMVGTFNLPSDGSAV 147
Can be released from tumor and dendritic cells in membrane vesicles or exosomes, and engage NCR3 thereby promoting natural killer cell (NK) activation and cytotoxicity.
Mus musculus (taxid: 10090)
>sp|P46379|BAG6_HUMAN Large proline-rich protein BAG6 OS=Homo sapiens GN=BAG6 PE=1 SV=2 Back     alignment and function description
>sp|Q6MG49|BAG6_RAT Large proline-rich protein BAG6 OS=Rattus norvegicus GN=Bag6 PE=2 SV=2 Back     alignment and function description
>sp|A7X5R6|BAG6_ORNAN Large proline-rich protein BAG6 OS=Ornithorhynchus anatinus GN=BAG6 PE=3 SV=1 Back     alignment and function description
>sp|A5D9M6|BAG6_PIG Large proline-rich protein BAG6 OS=Sus scrofa GN=BAG6 PE=2 SV=1 Back     alignment and function description
>sp|A4IH17|BAG6_XENTR Large proline-rich protein bag6 OS=Xenopus tropicalis GN=Bag6 PE=2 SV=1 Back     alignment and function description
>sp|Q9YHD3|BAG6A_XENLA Large proline-rich protein bag6-A OS=Xenopus laevis GN=Bag6-a PE=2 SV=1 Back     alignment and function description
>sp|Q6PA26|BAG6B_XENLA Large proline-rich protein bag6-B OS=Xenopus laevis GN=Bag6-b PE=2 SV=1 Back     alignment and function description
>sp|A3KPW9|BAG6_DANRE Large proline-rich protein BAG6 OS=Danio rerio GN=Bag6 PE=3 SV=1 Back     alignment and function description
>sp|Q9NIF3|UBQL_DICDI Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query958
255539136939 scythe/bat3, putative [Ricinus communis] 0.969 0.989 0.579 0.0
356553321943 PREDICTED: uncharacterized protein LOC10 0.969 0.985 0.553 0.0
356564406947 PREDICTED: uncharacterized protein LOC10 0.968 0.979 0.548 0.0
224061925950 predicted protein [Populus trichocarpa] 0.958 0.966 0.559 0.0
224085986918 predicted protein [Populus trichocarpa] 0.948 0.990 0.556 0.0
297735661945 unnamed protein product [Vitis vinifera] 0.941 0.954 0.529 0.0
10177007902 unnamed protein product [Arabidopsis tha 0.906 0.962 0.496 0.0
30694012879 ubiquitin family protein [Arabidopsis th 0.906 0.987 0.496 0.0
297795339879 ubiquitin family protein [Arabidopsis ly 0.900 0.981 0.495 0.0
226507310937 ubiquitin family protein [Zea mays] gi|1 0.916 0.937 0.338 1e-107
>gi|255539136|ref|XP_002510633.1| scythe/bat3, putative [Ricinus communis] gi|223551334|gb|EEF52820.1| scythe/bat3, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/967 (57%), Positives = 712/967 (73%), Gaps = 38/967 (3%)

Query: 1   MADQYPNESSSTGNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVP 60
           MA+Q+ NE SST  +S + SDA +E+N+KTL+SQ+YSF+VDKN+ V+ FKEKIAN+IGVP
Sbjct: 1   MAEQFSNEGSSTSKISAEDSDANIELNIKTLDSQIYSFKVDKNMLVSAFKEKIANEIGVP 60

Query: 61  VGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGS 120
           VGQQRLIFRGKVLKDEH+LSEY VE+GHTLHLV RQP Q+Q S+D SSG++N +N + G+
Sbjct: 61  VGQQRLIFRGKVLKDEHILSEYQVEDGHTLHLVARQPTQAQSSADTSSGDSNASNGSRGN 120

Query: 121 EANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNS 180
            A++  P+ R+GQ+SHSV+LGTFNVGD GEG  PDL+RVIGA++NS GIGGQT AT    
Sbjct: 121 VASSGTPQNRIGQISHSVVLGTFNVGDPGEGTVPDLSRVIGAVLNSFGIGGQT-ATNGIG 179

Query: 181 GIQFSTLSNIHAQPQQGNETAG-SGGHVGNQSQVGNQAQSGQPYPGQ-LSSPP-VVQIPQ 237
           G+Q ST+ N+ +Q  QGNETAG S  + G  ++ GNQ +SGQ +PGQ   SPP V+QIP 
Sbjct: 180 GMQSSTMPNVSSQAAQGNETAGASQSNAGGPNEAGNQTESGQAFPGQPFQSPPQVMQIPL 239

Query: 238 TAGAVPFPSLNVPIPDSLNTISEFMNHMEQTLSQNGYQPNTSSTSNEEVPRPELPSNERG 297
           TA AVP PSL++PIPDSL T++EFM  MEQ L+Q GYQPNTSS S    PR ELPSN RG
Sbjct: 240 TA-AVPLPSLDLPIPDSLRTLTEFMTRMEQALAQYGYQPNTSSNSTGSTPRFELPSNSRG 298

Query: 298 LPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIGFAMQ 357
           L   +ALNIVL+ A++LL+GH + ALSHIA RLEQ+GASSD +IRGQIQ ESVQ+G AMQ
Sbjct: 299 L---QALNIVLRHAEQLLNGHAITALSHIAERLEQDGASSDLSIRGQIQTESVQVGLAMQ 355

Query: 358 HLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSV 417
           HLG+LLLELGR +LTLRMGQSP E SVN GPAVYISPSGPNPIMVQPFP+QT+SLFGGSV
Sbjct: 356 HLGALLLELGRTMLTLRMGQSPAEASVNPGPAVYISPSGPNPIMVQPFPLQTNSLFGGSV 415

Query: 418 PSSNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRASNGDGVQGERRNATGSTEL 477
             SN  N GPVG+ +APRNINIHI AGT+LAPV+ST+GTRASNG+G+QGER NATGS+++
Sbjct: 416 AQSNSTNFGPVGIANAPRNINIHITAGTSLAPVVSTLGTRASNGEGMQGERVNATGSSQM 475

Query: 478 AGSGSVRVLPVRNIIAAAVPSRPTAAAISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQ 537
                 RVLP+RNIIAA +PSR T  A+   AQPG  +S+ Q  ++S  LSSV+ +V+SQ
Sbjct: 476 ------RVLPMRNIIAATMPSRSTGIAVPNAAQPGLSVSISQPPSDSTSLSSVISEVSSQ 529

Query: 538 IRNFVGNMQGENQVPSAEVMSAGQNLSDGSMVGSYAGNEQPSSTPVNRVGELRVSLSGNT 597
           +R+ VGN+QGENQ  S  + S+             AGN+  +  P N  GE  V+L  + 
Sbjct: 530 LRSIVGNIQGENQPTSGSISSS-------------AGNDTATEQP-NGAGESTVALPESM 575

Query: 598 PESESQKALPEGDHVR--TNEGMGSVLSSKDAPSSSSGGAQSSSSGESEDNSGNALGSIE 655
            E + Q+   + DH++   +E      S++D  S S   +   +S +SE+ S +A  S E
Sbjct: 576 SEGDKQE---QDDHIQGSNDEAKERFFSTQDVQSCSVECSSGVTSIKSEETSESASSSSE 632

Query: 656 KQDLQEGSKAAPLGLGLGGLERKRRPRQPKTPVKSSDGGMSNAPLDQNLNSTSVGQHLLQ 715
           K+D  EG +  PLGLG+G L+RKRR +QPK+ VKS D G S+ P+ QNLN    GQ LLQ
Sbjct: 633 KRDFSEGGQGVPLGLGMGSLDRKRRTKQPKSLVKSGDDGTSDTPISQNLNIGMSGQQLLQ 692

Query: 716 TLASSSSVRNGIDANELSFGQLPVV-ERVTESKQSGGQDIDSQVDTASAISEVLRSTELN 774
           +LAS SS  N + AN+   GQLP    R  ES   G QD D+Q DTAS +S+V+RS  LN
Sbjct: 693 SLASRSSSTNRVGANDTQTGQLPPSGGRNPESGSLGHQDSDAQSDTASIMSQVIRSPALN 752

Query: 775 GLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSGLGGGWAG 834
           GLL+G S+QTG+GSP+VLRNMLQQLTQ PQ+++TV+QIAQQ++ QD+GNMFSGLG G   
Sbjct: 753 GLLAGVSEQTGVGSPNVLRNMLQQLTQDPQLMSTVSQIAQQVEGQDLGNMFSGLGSGQGS 812

Query: 835 GIDLSRMVQQMMPVVSQALGRGSTPQP---LSGTPQCSERRSSGVDNPD-DPIQIGIQQV 890
           GIDLSRM+QQMMPVVSQ LGRG T QP   +    Q SE R  G +NPD   +QI +Q+V
Sbjct: 813 GIDLSRMMQQMMPVVSQVLGRGPTAQPSPHVEPESQYSESRLDGNENPDGRNVQIDLQEV 872

Query: 891 VQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRL 950
            QRI   + PG++FRA+ +NA +L  N S  +++V EL ++EDL  +Y E+L+ D++QRL
Sbjct: 873 AQRIGQCNAPGDMFRAIAENAARLTGNESSSQEIVHELSNNEDLVNDYIEMLQLDLHQRL 932

Query: 951 KGDSGRD 957
           + + G+D
Sbjct: 933 QREHGQD 939

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356553321|ref|XP_003545005.1| PREDICTED: uncharacterized protein LOC100811870 [Glycine max] Back     alignment and taxonomy information
>gi|356564406|ref|XP_003550445.1| PREDICTED: uncharacterized protein LOC100783611 [Glycine max] Back     alignment and taxonomy information
>gi|224061925|ref|XP_002300667.1| predicted protein [Populus trichocarpa] gi|222842393|gb|EEE79940.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224085986|ref|XP_002307766.1| predicted protein [Populus trichocarpa] gi|222857215|gb|EEE94762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297735661|emb|CBI18348.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|10177007|dbj|BAB10195.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30694012|ref|NP_199037.2| ubiquitin family protein [Arabidopsis thaliana] gi|22654985|gb|AAM98085.1| AT5g42220/K5J14_2 [Arabidopsis thaliana] gi|30102508|gb|AAP21172.1| AT5g42220/K5J14_2 [Arabidopsis thaliana] gi|332007398|gb|AED94781.1| ubiquitin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297795339|ref|XP_002865554.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311389|gb|EFH41813.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|226507310|ref|NP_001151456.1| ubiquitin family protein [Zea mays] gi|195646920|gb|ACG42928.1| ubiquitin family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query958
TAIR|locus:2157602879 AT5G42220 [Arabidopsis thalian 0.489 0.533 0.575 1.6e-180
TAIR|locus:2145432658 AT5G25270 "AT5G25270" [Arabido 0.372 0.542 0.299 5.8e-27
UNIPROTKB|F6RG75233 BAG6 "Large proline-rich prote 0.132 0.545 0.345 3.5e-15
UNIPROTKB|A7X5R6 1088 BAG6 "Large proline-rich prote 0.201 0.177 0.315 2.6e-13
UNIPROTKB|A5D9M6 1128 BAG6 "Large proline-rich prote 0.132 0.112 0.338 1.4e-12
ZFIN|ZDB-GENE-060825-176156 zgc:153389 "zgc:153389" [Danio 0.127 0.782 0.357 1.5e-12
UNIPROTKB|F6TC96158 BAG6 "Large proline-rich prote 0.132 0.803 0.345 2.4e-12
MGI|MGI:1919439 1154 Bag6 "BCL2-associated athanoge 0.133 0.110 0.325 9.7e-12
UNIPROTKB|P46379 1132 BAG6 "Large proline-rich prote 0.132 0.112 0.345 1e-11
RGD|71064 1146 Bag6 "BCL2-associated athanoge 0.240 0.200 0.253 2.7e-11
TAIR|locus:2157602 AT5G42220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1332 (473.9 bits), Expect = 1.6e-180, Sum P(2) = 1.6e-180
 Identities = 279/485 (57%), Positives = 339/485 (69%)

Query:     1 MADQYPNEXXXXXXXXXXXXDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVP 60
             M DQ  N+            ++ +E+N+KTL+S+ Y+FQV+KN  V LFKEKIA++ GVP
Sbjct:     1 MEDQPINQCSSSTNASEKTPESTLELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVP 60

Query:    61 VGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRXXXXXXXXXXX-XXGET--NGNNVT 117
             VGQQRLIFRG+VLKD+H LSEYH+ENGHTLHL++R              G T  +GNN  
Sbjct:    61 VGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLIVRQPAESAPSSGTPSQGATANDGNNTN 120

Query:   118 GGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATG 177
             GG   N     GR   VSHSV+LG+FNVGDQ EGI PDL+RVIGA++NS G+ GQ P   
Sbjct:   121 GGPSRN-----GR--HVSHSVVLGSFNVGDQTEGIVPDLSRVIGAVLNSFGVSGQLPTNH 173

Query:   178 SNSGIQFSTLSNIHAQPQQGNETAGSGGHVGNQSQVGNQAQSGQPYPG---QLSSPPVVQ 234
             S +G Q S  SN  +    GN + G  G +G QSQ    +Q  Q +PG   Q S P VVQ
Sbjct:   174 STNGTQSSMPSNQSSNAPPGNTSDGEPG-IGGQSQATGHSQPRQAFPGVSFQTSMPRVVQ 232

Query:   235 IPQTAGA-VPFPSLNVPIPDSLNTISEFMNHMEQTLSQNGYQPNTSSTSNEEVPRPELPS 293
             IP TA   +P PS   PIPDSL+T+ EF+N MEQ LSQNGYQP+TSS  +   PR ELP 
Sbjct:   233 IPVTAATTIPIPSFLTPIPDSLDTLMEFINRMEQALSQNGYQPDTSSAGSGGRPREELPR 292

Query:   294 NERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNIRGQIQAESVQIG 353
             N RG  TPEAL++VL+ AQ LLSG  V++LSHIAGRLEQ+G+SSDP +R QIQ E+VQ+G
Sbjct:   293 NRRGAATPEALSVVLRNAQHLLSGLGVSSLSHIAGRLEQDGSSSDPTLRSQIQTEAVQVG 352

Query:   354 FAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLF 413
              AMQHLG+LLLELGR ILTLRM  SP    VNAGPAVYISPSGPNPIMVQPFP Q S LF
Sbjct:   353 LAMQHLGALLLELGRTILTLRMAPSPELSYVNAGPAVYISPSGPNPIMVQPFPHQISPLF 412

Query:   414 GGSVPSSNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRASNGDGVQGERRNATG 473
              G+  SSNP+  GPVG+G A R+INIHIHAGT+ +P+LS++G + SNG+G QG+R + T 
Sbjct:   413 TGATVSSNPLT-GPVGLGTAQRHINIHIHAGTSGSPMLSSVGNQRSNGEGGQGDRDSNTS 471

Query:   474 STELA 478
             S   A
Sbjct:   472 SVPAA 476
GO:0005634 "nucleus" evidence=ISM
GO:0005829 "cytosol" evidence=IDA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2145432 AT5G25270 "AT5G25270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F6RG75 BAG6 "Large proline-rich protein BAG6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7X5R6 BAG6 "Large proline-rich protein BAG6" [Ornithorhynchus anatinus (taxid:9258)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9M6 BAG6 "Large proline-rich protein BAG6" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060825-176 zgc:153389 "zgc:153389" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6TC96 BAG6 "Large proline-rich protein BAG6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919439 Bag6 "BCL2-associated athanogene 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P46379 BAG6 "Large proline-rich protein BAG6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|71064 Bag6 "BCL2-associated athanogene 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query958
cd0180972 cd01809, Scythe_N, Ubiquitin-like domain of Scythe 2e-32
cd0176969 cd01769, UBL, Ubiquitin-like domain of UBL 4e-21
smart0021372 smart00213, UBQ, Ubiquitin homologues 5e-21
pfam0024069 pfam00240, ubiquitin, Ubiquitin family 5e-20
cd0180577 cd01805, RAD23_N, Ubiquitin-like domain of RAD23 3e-12
cd0019669 cd00196, UBQ, Ubiquitin-like proteins 1e-11
cd0180871 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 2e-11
cd0180376 cd01803, Ubiquitin, Ubiquitin 4e-11
cd0180676 cd01806, Nedd8, Nebb8-like ubiquitin protein 2e-10
cd0180774 cd01807, GDX_N, ubiquitin-like domain of GDX 5e-10
pfam1197672 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO- 4e-08
PTZ0004476 PTZ00044, PTZ00044, ubiquitin; Provisional 1e-07
cd0180076 cd01800, SF3a120_C, Ubiquitin-like domain of Mamma 2e-07
cd01802103 cd01802, AN1_N, ubiquitin-like domain of AN1 7e-07
TIGR00601378 TIGR00601, rad23, UV excision repair protein Rad23 3e-06
cd0179778 cd01797, NIRF_N, amino-terminal ubiquitin-like dom 9e-05
cd0179870 cd01798, parkin_N, amino-terminal ubiquitin-like o 0.003
>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein Back     alignment and domain information 
 Score =  120 bits (302), Expect = 2e-32
 Identities = 43/72 (59%), Positives = 57/72 (79%)

Query: 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYH 83
          +EI VKTL+SQ ++F V++ I V   KEKIA ++G+PV QQRLI+ G+VLKD+  LSEY 
Sbjct: 1  IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 84 VENGHTLHLVIR 95
          VE+GHT+HLV R
Sbjct: 61 VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72
>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL Back     alignment and domain information
>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues Back     alignment and domain information
>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family Back     alignment and domain information
>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23 Back     alignment and domain information
>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins Back     alignment and domain information
>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin Back     alignment and domain information
>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein Back     alignment and domain information
>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX Back     alignment and domain information
>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like Back     alignment and domain information
>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional Back     alignment and domain information
>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1 Back     alignment and domain information
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 Back     alignment and domain information
>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 958
KOG42481143 consensus Ubiquitin-like protein, regulator of apo 100.0
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 99.7
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 99.66
PTZ0004476 ubiquitin; Provisional 99.66
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 99.64
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 99.63
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 99.63
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 99.62
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 99.62
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 99.62
cd0179173 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know 99.61
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 99.6
cd0179870 parkin_N amino-terminal ubiquitin-like of parkin p 99.6
cd0180478 midnolin_N Ubiquitin-like domain of midnolin. midn 99.59
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 99.56
cd0179280 ISG15_repeat1 ISG15 ubiquitin-like protein, first 99.56
cd0180871 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC 99.56
cd0179079 Herp_N Homocysteine-responsive endoplasmic reticul 99.55
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 99.53
TIGR00601378 rad23 UV excision repair protein Rad23. All protei 99.48
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 99.47
KOG0010493 consensus Ubiquitin-like protein [Posttranslationa 99.47
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 99.45
cd0176387 Sumo Small ubiquitin-related modifier (SUMO). Smal 99.45
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 99.45
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 99.42
KOG000570 consensus Ubiquitin-like protein [Cell cycle contr 99.41
KOG0004156 consensus Ubiquitin/40S ribosomal protein S27a fus 99.38
KOG0003128 consensus Ubiquitin/60s ribosomal protein L40 fusi 99.37
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 99.33
KOG0011340 consensus Nucleotide excision repair factor NEF2, 99.25
cd0181575 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC 99.19
cd0179975 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO 99.19
cd01814113 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT 99.15
cd0176969 UBL Ubiquitin-like domain of UBL. UBLs function by 99.15
KOG4248 1143 consensus Ubiquitin-like protein, regulator of apo 99.13
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 99.08
cd01795107 USP48_C USP ubiquitin-specific protease. The USP ( 98.85
KOG000175 consensus Ubiquitin and ubiquitin-like proteins [P 98.84
cd0178984 Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol 98.82
PF13881111 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB 98.66
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 98.63
PLN02560308 enoyl-CoA reductase 98.55
cd0181180 OASL_repeat1 2'-5' oligoadenylate synthetase-like 98.54
cd0180177 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- 98.34
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 98.33
cd01788119 ElonginB Ubiquitin-like domain of Elongin B. Elong 98.31
KOG176999 consensus Ubiquitin-like proteins [Posttranslation 97.94
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 97.86
KOG0006446 consensus E3 ubiquitin-protein ligase (Parkin prot 97.78
KOG349373 consensus Ubiquitin-like protein [Posttranslationa 97.65
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 97.55
PF0881779 YukD: WXG100 protein secretion system (Wss), prote 96.91
KOG4583391 consensus Membrane-associated ER protein involved 96.69
PF0078982 UBX: UBX domain; InterPro: IPR001012 The UBX domai 96.62
COG5227103 SMT3 Ubiquitin-like protein (sentrin) [Posttransla 96.25
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 96.2
KOG4495110 consensus RNA polymerase II transcription elongati 96.17
PF1030297 DUF2407: DUF2407 ubiquitin-like domain; InterPro: 95.93
COG541781 Uncharacterized small protein [Function unknown] 95.72
KOG0004156 consensus Ubiquitin/40S ribosomal protein S27a fus 95.46
smart0016680 UBX Domain present in ubiquitin-regulatory protein 95.39
PF13019162 Telomere_Sde2: Telomere stability and silencing 95.33
PF1147065 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: 95.32
cd0176777 UBX UBX (ubiquitin regulatory X) domain. The UBX ( 95.14
KOG0003128 consensus Ubiquitin/60s ribosomal protein L40 fusi 95.13
cd0177079 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is 94.5
KOG0013231 consensus Uncharacterized conserved protein [Funct 94.29
KOG000570 consensus Ubiquitin-like protein [Cell cycle contr 94.16
cd0177485 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i 94.14
KOG3206234 consensus Alpha-tubulin folding cofactor B [Posttr 93.99
cd0177279 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst 93.93
KOG1639297 consensus Steroid reductase required for elongatio 93.76
cd0177180 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac 92.33
cd0177382 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i 91.7
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 91.1
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 88.64
PF1504476 CLU_N: Mitochondrial function, CLU-N-term 88.12
PTZ0004476 ubiquitin; Provisional 85.91
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 85.62
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 85.3
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 84.45
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 84.38
PLN0279982 Molybdopterin synthase sulfur carrier subunit 83.6
cd0075480 MoaD Ubiquitin domain of MoaD-like proteins. MoaD 83.31
PRK0643767 hypothetical protein; Provisional 82.37
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 82.16
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 82.11
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 80.98
PRK0836470 sulfur carrier protein ThiS; Provisional 80.31
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 80.29
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-71  Score=642.15  Aligned_cols=790  Identities=21%  Similarity=0.161  Sum_probs=623.7

Q ss_pred             EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCCCcC
Q 048474           26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPSSD  105 (958)
Q Consensus        26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~fvK  105 (958)
                      ...+++....+...+.+..++...|.+|...+|||...++|+|-|..++++..+..|+.+.....+..++.+.+....+.
T Consensus       327 dl~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~  406 (1143)
T KOG4248|consen  327 DLRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVE  406 (1143)
T ss_pred             HhhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCC
Confidence            33455666667777777778888899999999999999999999999999999999999999998887777666555433


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCchhHHHHHHHHhhccCCCCCCCcCCCCCCCCc
Q 048474          106 ASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNSGIQFS  185 (958)
Q Consensus       106 tssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq~eGIPPdqQRLIfavL~s~G~~g~~~~~~~~gG~~~~  185 (958)
                      ++.--.+    +...+....+.+.....+.+.....-++...+-+++...+-.+..+++..+|..|+.++++.+=+....
T Consensus       407 tp~qGat----t~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l  482 (1143)
T KOG4248|consen  407 TPAQGAT----TPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDL  482 (1143)
T ss_pred             CcccCCc----CCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcC
Confidence            3221111    111111122223334455555555444433345566677777888899999999998888876555544


Q ss_pred             cCCcCCCCCCCCCCCCCCCCCCCCcCcCCCCCCCCCCC-CC--CCCCCCcccccCCC-CccCCCCCCCCCCChhhhHHHH
Q 048474          186 TLSNIHAQPQQGNETAGSGGHVGNQSQVGNQAQSGQPY-PG--QLSSPPVVQIPQTA-GAVPFPSLNVPIPDSLNTISEF  261 (958)
Q Consensus       186 ~~s~~~~~~s~G~~t~~~~~n~gg~t~~~~~~qp~q~~-r~--~~~~~~~~q~p~~~-~~~~~~s~~~vIPDSLtTlsqy  261 (958)
                      .+.+..--+..|.+.+..+       +++.+.++.+-+ +.  ..+..+..+.+.+. ..+|+..+...||   -||-.+
T Consensus       483 ~Pthq~~~~pd~P~i~p~s-------sg~e~~s~~q~~~glstd~S~~q~~s~~dt~~~t~Pv~~lr~~vp---~~l~~~  552 (1143)
T KOG4248|consen  483 APTHQVIARPDGPGIGPFS-------SGGEPNSPTQQGAGLSTDHSLAQMVSGPDTQLTTIPVLVLRGCVP---GMLPPP  552 (1143)
T ss_pred             CCcceeecCCCCCCCCCCC-------CCCCCcChhhhccccccccchhhhccCCCccceeeccchhhccch---hhcCCc
Confidence            3334333345555554444       334455554322 32  23333455555444 3346655555677   466778


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCChhh
Q 048474          262 MNHMEQTLSQNGYQPNTSSTSNEEVPRPELPSNERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNI  341 (958)
Q Consensus       262 l~rm~~~f~~ng~q~~~~s~~~~~~~~~~~~~~~~glptp~~L~~v~~st~qLL~gqA~~~Ls~la~~le~~~~~td~~~  341 (958)
                      ++.|+..+ +++|++.++..+.       -+.....+|.|++|++|+++|+|||+|..+.|||+|+++|+++++++||.+
T Consensus       553 ~~qv~~a~-d~~nq~~~n~q~p-------~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~lsd~vsvSdPsa  624 (1143)
T KOG4248|consen  553 GPQVASAL-DTGNQADTNGQAP-------GGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLSDTVSVSDPSA  624 (1143)
T ss_pred             chhHHHhh-hccccccccccCC-------CCCccccCCCchHHHHHHHHHHHHHhcCCcccccCccccccCCcccCCCcc
Confidence            88888888 8888776662222       123345567799999999999999999999999999999999999999999


Q ss_pred             hhhhh--HHHHHHHHHHHHHHHHHHHhhhhheeeecCCCCccccccCCCeeEeCCCCCCCcccCCCCcccCCCCCcCCCC
Q 048474          342 RGQIQ--AESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPS  419 (958)
Q Consensus       342 R~~iQ--~~a~q~G~~mq~LGalllELGRt~mtLrmgqsp~ea~VNaGpAvfIspsGPNpiMVQp~pfq~~~~fg~~~~~  419 (958)
                      |+.+|  ++.+|.|.+|+|||+.+|||||||+|+|||+|    .+|+||||||||+|+||+|++|||.+-...|-.+..+
T Consensus       625 ral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~p~l~Tsi~s~  700 (1143)
T KOG4248|consen  625 RALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHSPELFTSIRSG  700 (1143)
T ss_pred             hhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccCchhhcccccc
Confidence            99999  99999999999999999999999999999999    8999999999999999999999999999999999888


Q ss_pred             CCCCccCCcccccCCceeeeeeecccCcCCcccccCccCCCCCCccCccccCCCCccccCCCCceeccccceEEeecCCC
Q 048474          420 SNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRASNGDGVQGERRNATGSTELAGSGSVRVLPVRNIIAAAVPSR  499 (958)
Q Consensus       420 ~~~~~~G~~g~~~~pR~i~I~i~~gts~~~~~~~~~n~~~~~~~~qge~~n~~~~~~~~~~~~~r~~P~Rtvvaa~~~~~  499 (958)
                      .++.-.++.|...++|+++|||++|+.-.+..+..+|..+.+.+.|.+..-.+.+                 ++...|++
T Consensus       701 ~~~~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s-----------------~~sttPS~  763 (1143)
T KOG4248|consen  701 NHIVLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDS-----------------PLSQTPSM  763 (1143)
T ss_pred             cccccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCC-----------------ccccCCCC
Confidence            8884457899999999999999999999999999999999998888765332222                 67788999


Q ss_pred             CcccccccccCCCCCCCcCCCccccCchhhHHHHHHHHHHHhhhccCCCCCCCccc-----ccccccCCCCCccccCCCC
Q 048474          500 PTAAAISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQIRNFVGNMQGENQVPSAE-----VMSAGQNLSDGSMVGSYAG  574 (958)
Q Consensus       500 ~~~~~~~~~~q~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~-----~~~~~~~~~~~~~~~~~~~  574 (958)
                      +...+..+.++.+++.|+            ..+|++..+++++.-+  .||+|.|.     .|.+||+|..-...-  -.
T Consensus       764 p~~t~l~t~~~~~~~ds~------------lq~qm~~~~~dv~n~g--~~Q~p~~ia~~~a~~~~~~~l~~l~~e~--~s  827 (1143)
T KOG4248|consen  764 PDVTNLPTGHPQPLQDST------------LQPQLRSFFPDVYNGG--HVQIPTPIAIRMALDTLGTGLEELVRES--FS  827 (1143)
T ss_pred             CCcccccCCCCCCCCchh------------hhhhhhhhchhhhccc--cccccchhhhhhhhhhhccchhhhcccc--cc
Confidence            999999999999998865            6788999999988755  89999996     889999998733321  11


Q ss_pred             CCCCCCCCcccccccccccCCCCCCcccccCCCCCccccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 048474          575 NEQPSSTPVNRVGELRVSLSGNTPESESQKALPEGDHVRTNEGMGSVLSSKDAPSSSSGGAQSSSSGESEDNSGNALGSI  654 (958)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~  654 (958)
                      +-.++-.+.+.++..      -++.+|+-|.+++.++++....+    -.-|..                         +
T Consensus       828 ~~a~~~~~ds~~~pg------~~l~sEr~N~i~q~vkpltps~~----aag~~e-------------------------~  872 (1143)
T KOG4248|consen  828 LVAVQRGVDSIIRPG------LRLLSERFNSIAQHVKPLTPSGF----AAGLLE-------------------------L  872 (1143)
T ss_pred             ccCcccCcCcccccc------cchHHHHhhhhhhccccCCcccc----chhhHH-------------------------H
Confidence            111122333333333      34677899999988865522222    111222                         2


Q ss_pred             cccccccCCccccccccCCCCCccCCCCCCCCCCccCCCCCCCCCCcCCcCchhhHHHHHHHHhhcCCCCCCCCCCcCCC
Q 048474          655 EKQDLQEGSKAAPLGLGLGGLERKRRPRQPKTPVKSSDGGMSNAPLDQNLNSTSVGQHLLQTLASSSSVRNGIDANELSF  734 (958)
Q Consensus       655 ~~~~~~~~~~a~plglg~ggl~~krrsk~~k~~~~~~d~g~~~~~~~q~q~~~~~gqq~lq~las~~s~~~r~~~~~~~~  734 (958)
                      .++..+++....+|+||++++++|+|+|..|-.          ++...|++.++.+||+||.|.+-.+   +        
T Consensus       873 ~nq~~pe~~a~t~l~lgv~n~E~~~rq~~~~~~----------~~~g~~~sl~~frqq~mq~l~~~va---~--------  931 (1143)
T KOG4248|consen  873 CNQALPECLALTLLCLGVANAELAPRQNGRIRR----------MSEGVNPSLVSFRQQMMQFLLQVVA---E--------  931 (1143)
T ss_pred             HhccchhhHHHHHHhhcccchhhhhhhhccccc----------ccccccccHHHHHHHHHHHHHHhhh---c--------
Confidence            456667999999999999999999999999876          5566788999999999999998765   2        


Q ss_pred             CCCCcchhhcccCCCCCCCCCCCcchHHHHHHHhhhhhhhhhhhccccccCCCChHHHHHHHHHhhcChHHHHHHHHHHH
Q 048474          735 GQLPVVERVTESKQSGGQDIDSQVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQ  814 (958)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~s~vl~sp~~~~ll~gv~~q~g~~sp~~lrnml~qltq~p~~m~tv~~i~q  814 (958)
                              .....+...++.+.+++....+.++|-++|.+.++.++..|.+..+|+-.++|.|+.+++|..|++|.++++
T Consensus       932 --------si~a~t~t~~~sn~rv~~s~q~~~e~~t~v~~~~~a~p~sq~~~~sp~~~tsm~Q~te~~p~~~~~v~e~a~ 1003 (1143)
T KOG4248|consen  932 --------SIPAGTDTGLGSNRRVGDSPQALPEEPTEVQGAERASPESQRENASPAPGTSMEQATERGPPPAPSVDEQAG 1003 (1143)
T ss_pred             --------cCcccchhhccccccccccccccccccchhccccccCcccccccCCCCCcccHHHHhhcCCCCCCchhhhcc
Confidence                    234455667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccccCCCCCccCccchHHHHH-HHhHHHHHhhcCCCCCCCCCCCCCCcccCCCCCCCCCCCccccHHHHHHH
Q 048474          815 QIDTQDVGNMFSGLGGGWAGGIDLSRMVQ-QMMPVVSQALGRGSTPQPLSGTPQCSERRSSGVDNPDDPIQIGIQQVVQR  893 (958)
Q Consensus       815 qvd~qd~~nm~sg~g~gqggg~dlsrm~q-qmmpvvsq~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~~qi~l~~~~q~  893 (958)
                      +++|++..+|..++..+-++++||++|++ +|||-+|.++-.|..+ +..+.+|...++.         +|..|++++||
T Consensus      1004 ~~~g~ep~~m~~~~e~~~~i~~diqs~~~v~~~p~~S~a~~~Gm~~-~~~k~iq~e~~~~---------sq~l~~~~~q~ 1073 (1143)
T KOG4248|consen 1004 ASAGTEPWAMAVPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPA-KRRKTIQGEGPRH---------SQLLLSEAVQR 1073 (1143)
T ss_pred             cccccCccccCCCccccccccHhHHHHhhcCCCCcccccccCCCcc-ccchhhcCCCCcH---------HHHHHHHHHHH
Confidence            99999999999999999999999999999 9999999999999777 5566677766665         79999999999


Q ss_pred             hhhcCChhHHHHHHHHhhhhhccCCCChHHHHHhhcCCHHHHHHHHHHHHHHHHHHhccccCC
Q 048474          894 IEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRLKGDSGR  956 (958)
Q Consensus       894 ie~~~~p~dif~av~e~a~~~~~~~~~~~~~~~el~~~e~la~ey~~~l~~dv~~rl~~~s~~  956 (958)
                      ++|.+.+++||++|++||..      +.++++++  +|++++.+|.+.||+||.+|||.|.+-
T Consensus      1074 ~~~S~~~~~~~~~~~~Nasi------srd~l~ns--~d~~iqe~ya~~lr~di~~r~q~Dq~~ 1128 (1143)
T KOG4248|consen 1074 AAKSAGARPLTSPIRDNASI------SRDLLANS--EDHEIQESYAQQLRSDIQKRLQEDQNY 1128 (1143)
T ss_pred             Hhhccccccccccccccchh------cccccccc--hhHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            99999999999999999999      88889988  899999999999999999999998763

>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>cd01791 Ubl5 UBL5 ubiquitin-like modifier Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information
>cd01804 midnolin_N Ubiquitin-like domain of midnolin Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 Back     alignment and domain information
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>cd01763 Sumo Small ubiquitin-related modifier (SUMO) Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] Back     alignment and domain information
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP Back     alignment and domain information
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 Back     alignment and domain information
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 Back     alignment and domain information
>cd01769 UBL Ubiquitin-like domain of UBL Back     alignment and domain information
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>cd01795 USP48_C USP ubiquitin-specific protease Back     alignment and domain information
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B Back     alignment and domain information
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>PLN02560 enoyl-CoA reductase Back     alignment and domain information
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2 Back     alignment and domain information
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>cd01788 ElonginB Ubiquitin-like domain of Elongin B Back     alignment and domain information
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold [] Back     alignment and domain information
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast Back     alignment and domain information
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription] Back     alignment and domain information
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi Back     alignment and domain information
>COG5417 Uncharacterized small protein [Function unknown] Back     alignment and domain information
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00166 UBX Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>PF13019 Telomere_Sde2: Telomere stability and silencing Back     alignment and domain information
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly Back     alignment and domain information
>cd01767 UBX UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01770 p47_UBX p47-like ubiquitin domain Back     alignment and domain information
>KOG0013 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain Back     alignment and domain information
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01772 SAKS1_UBX SAKS1-like UBX domain Back     alignment and domain information
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] Back     alignment and domain information
>cd01771 Faf1_UBX Faf1 UBX domain Back     alignment and domain information
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>PF15044 CLU_N: Mitochondrial function, CLU-N-term Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>PLN02799 Molybdopterin synthase sulfur carrier subunit Back     alignment and domain information
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query958
1wx9_A86 Solution Structure Of The N-Terminal Ubiquitin-Like 4e-10
4eew_A88 Crystal Structure Of The Ubl Domain Of Bag6 Length 1e-09
4dwf_A90 Crystal Structure Of A Hla-B Associated Transcript 2e-09
3u5g_f152 The Structure Of The Eukaryotic Ribosome At 3.0 A R 6e-09
2k25_A103 Automated Nmr Structure Of The Ubb By Fapsy Length 9e-09
3u5e_m128 The Structure Of The Eukaryotic Ribosome At 3.0 A R 1e-08
2jvc_A82 Nmr Solution Structure Of Ubiquitin Like Protein Le 1e-08
3m63_B101 Crystal Structure Of Ufd2 In Complex With The Ubiqu 2e-08
4a18_K129 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-08
3ai5_A307 Crystal Structure Of Yeast Enhanced Green Fluoresce 2e-08
3olm_D79 Structure And Function Of A Ubiquitin Binding Site 2e-08
2bwe_S77 The Crystal Structure Of The Complex Between The Ub 3e-08
1yx5_B98 Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le 3e-08
4ii3_B96 Crystal Structure Of S. Pombe Ubiquitin Activating 3e-08
4hcn_B98 Crystal Structure Of Burkholderia Pseudomallei Effe 3e-08
3jvz_X81 E2~ubiquitin-Hect Length = 81 3e-08
3k9o_B96 The Crystal Structure Of E2-25k And Ubb+1 Complex L 3e-08
3q3f_A189 Engineering Domain-Swapped Binding Interfaces By Mu 4e-08
4gsw_A80 Crystal Structure Of Ubiquitin From Entamoeba Histo 4e-08
3zf7_s128 High-resolution Cryo-electron Microscopy Structure 4e-08
3u5c_f152 The Structure Of The Eukaryotic Ribosome At 3.0 A R 4e-08
1otr_B76 Solution Structure Of A Cue-Ubiquitin Complex Lengt 4e-08
4ap4_C80 Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le 4e-08
2k6d_B76 Cin85 Sh3-C Domain In Complex With Ubiquitin Length 4e-08
2ojr_A111 Structure Of Ubiquitin Solved By Sad Using The Lant 4e-08
3l0w_B169 Structure Of Split Monoubiquitinated Pcna With Ubiq 4e-08
3u30_A172 Crystal Structure Of A Linear-Specific Ubiquitin Fa 5e-08
2zvn_A154 Nemo Cozi Domain Incomplex With Diubiquitin In P212 5e-08
3ldz_F73 Crystal Structure Of Human Stam1 Vhs Domain In Comp 5e-08
1ud7_A76 Solution Structure Of The Designed Hydrophobic Core 5e-08
3rul_A79 New Strategy To Analyze Structures Of Glycopeptide- 6e-08
2ld9_A77 Backbone Structure Of Ubiquitin Determined Using Ba 6e-08
2y5b_B152 Structure Of Usp21 In Complex With Linear Diubiquit 6e-08
3dvg_X80 Crystal Structure Of K63-Specific Fab Apu.3a8 Bound 6e-08
2znv_C77 Crystal Structure Of Human Amsh-Lp Dub Domain In Co 6e-08
1xd3_B75 Crystal Structure Of Uchl3-Ubvme Complex Length = 7 7e-08
1cmx_B76 Structural Basis For The Specificity Of Ubiquitin C 7e-08
3ons_A72 Crystal Structure Of Human Ubiquitin In A New Cryst 7e-08
2khw_B79 Solution Structure Of The Human Polymerase Iota Ubm 7e-08
2w9n_A152 Crystal Structure Of Linear Di-Ubiquitin Length = 1 7e-08
3vdz_A111 Tailoring Encodable Lanthanide-Binding Tags As Mri 7e-08
3b08_A152 Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl 7e-08
3dvg_Y79 Crystal Structure Of K63-Specific Fab Apu.3a8 Bound 7e-08
1aar_A76 Structure Of A Diubiquitin Conjugate And A Model Fo 7e-08
1yiw_A76 X-Ray Crystal Structure Of A Chemically Synthesized 7e-08
2znv_B76 Crystal Structure Of Human Amsh-Lp Dub Domain In Co 8e-08
3nob_A78 Structure Of K11-Linked Di-Ubiquitin Length = 78 8e-08
2xk5_B76 Crystal Structure Of K6-Linked Diubiquitin Length = 1e-07
1s1q_B76 Tsg101(Uev) Domain In Complex With Ubiquitin Length 1e-07
2kdi_A114 Solution Structure Of A UbiquitinUIM FUSION PROTEIN 1e-07
1sif_A88 Crystal Structure Of A Multiple Hydrophobic Core Mu 1e-07
1zgu_B76 Solution Structure Of The Human Mms2-Ubiquitin Comp 1e-07
2o6v_D76 Crystal Structure And Solution Nmr Studies Of Lys48 1e-07
2zcb_A76 Crystal Structure Of Ubiquitin P37aP38A Length = 76 2e-07
2jwz_A76 Mutations In The Hydrophobic Core Of Ubiquitin Diff 2e-07
2o6v_B76 Crystal Structure And Solution Nmr Studies Of Lys48 4e-07
1yj1_A76 X-Ray Crystal Structure Of A Chemically Synthesized 4e-07
3v6e_B91 Crystal Structure Of Usp2 And A Mutant Form Of Ubiq 5e-07
2fcs_A76 X-Ray Crystal Structure Of A Chemically Synthesized 6e-07
2dzi_A81 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin- 6e-07
1c3t_A76 Rotamer Strain As A Determinant Of Protein Structur 6e-07
3v6c_B91 Crystal Structure Of Usp2 In Complex With Mutated U 9e-07
1zw7_A82 Elimination Of The C-Cap In Ubiquitin Structure, Dy 9e-07
4hjk_A77 U7ub7 Disulfide Variant Length = 77 1e-06
3dbh_I88 Structural Dissection Of A Gating Mechanism Prevent 1e-06
3h7s_B76 Crystal Structures Of K63-Linked Di- And Tri-Ubiqui 1e-06
1ogw_A76 Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le 1e-06
4ii2_B83 Crystal Structure Of Ubiquitin Activating Enzyme 1 1e-06
2gbr_A81 Crystal Structure Of The 35-36 Moad Insertion Mutan 3e-06
1bt0_A76 Structure Of Ubiquitin-Like Protein, Rub1 Length = 5e-06
3dbl_I88 Structural Dissection Of A Gating Mechanism Prevent 5e-06
2gbk_A83 Crystal Structure Of The 9-10 Moad Insertion Mutant 8e-06
2gbj_A84 Crystal Structure Of The 9-10 8 Glycine Insertion M 1e-05
4hcp_B78 Crystal Structure Of Burkholderia Pseudomallei Effe 1e-05
1ndd_B76 Structure Of Nedd8 Length = 76 1e-05
3gzn_I82 Structure Of Nedd8-Activating Enzyme In Complex Wit 1e-05
2klc_A101 Nmr Solution Structure Of Human Ubiquitin-Like Doma 1e-05
2bkr_B77 Nedd8 Nedp1 Complex Length = 77 2e-05
1j8c_A125 Solution Structure Of The Ubiquitin-Like Domain Of 2e-05
4f8c_B88 Structure Of The Cif:nedd8 Complex - Yersinia Pseud 2e-05
1p1a_A85 Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le 3e-05
2nvu_I81 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 3e-05
3mtn_B85 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 3e-05
1uel_A95 Solution Structure Of Ubiquitin-Like Domain Of Hhr2 4e-05
2gbm_A84 Crystal Structure Of The 35-36 8 Glycine Insertion 4e-05
1oqy_A368 Structure Of The Dna Repair Protein Hhr23a Length = 4e-05
4i6l_B76 Crystal Structure Of Otub1 In Complex With Ubiquiti 5e-05
3dqv_A81 Structural Insights Into Nedd8 Activation Of Cullin 5e-05
4hk2_A78 U7ub25.2540 Length = 78 9e-05
1wx8_A96 Solution Structure Of The N-Terminal Ubiquitin-Like 2e-04
1p98_A78 High-Resolution Nmr Structure Of The Ubl-Domain Of 2e-04
2wyq_A85 The Crystal Structure Of The Ubiquitin-Like (Ubl) D 3e-04
1zkh_A86 Solution Structure Of A Human Ubiquitin-Like Domain 4e-04
3n3k_B85 The Catalytic Domain Of Usp8 In Complex With A Usp8 5e-04
>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYH 83
          +E+ VKTL+SQ  +F V   + V  FKE IA  + +P  +QRLI++G+VL+D+  L EY+
Sbjct: 8  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 67
Query: 84 VENGHTLHLVIR 95
          V  G  +HLV R
Sbjct: 68 V-GGKVIHLVER 78
>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88 Back     alignment and structure
>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90 Back     alignment and structure
>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152 Back     alignment and structure
>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103 Back     alignment and structure
>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128 Back     alignment and structure
>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82 Back     alignment and structure
>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101 Back     alignment and structure
>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129 Back     alignment and structure
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307 Back     alignment and structure
>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79 Back     alignment and structure
>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77 Back     alignment and structure
>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98 Back     alignment and structure
>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96 Back     alignment and structure
>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98 Back     alignment and structure
>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81 Back     alignment and structure
>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96 Back     alignment and structure
>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189 Back     alignment and structure
>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80 Back     alignment and structure
>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128 Back     alignment and structure
>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152 Back     alignment and structure
>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76 Back     alignment and structure
>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80 Back     alignment and structure
>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76 Back     alignment and structure
>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111 Back     alignment and structure
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169 Back     alignment and structure
>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172 Back     alignment and structure
>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154 Back     alignment and structure
>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73 Back     alignment and structure
>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76 Back     alignment and structure
>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79 Back     alignment and structure
>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77 Back     alignment and structure
>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152 Back     alignment and structure
>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80 Back     alignment and structure
>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77 Back     alignment and structure
>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75 Back     alignment and structure
>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76 Back     alignment and structure
>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72 Back     alignment and structure
>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79 Back     alignment and structure
>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152 Back     alignment and structure
>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111 Back     alignment and structure
>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152 Back     alignment and structure
>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79 Back     alignment and structure
>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76 Back     alignment and structure
>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76 Back     alignment and structure
>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76 Back     alignment and structure
>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78 Back     alignment and structure
>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76 Back     alignment and structure
>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76 Back     alignment and structure
>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114 Back     alignment and structure
>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88 Back     alignment and structure
>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76 Back     alignment and structure
>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76 Back     alignment and structure
>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76 Back     alignment and structure
>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76 Back     alignment and structure
>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76 Back     alignment and structure
>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76 Back     alignment and structure
>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91 Back     alignment and structure
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76 Back     alignment and structure
>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81 Back     alignment and structure
>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76 Back     alignment and structure
>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91 Back     alignment and structure
>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82 Back     alignment and structure
>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77 Back     alignment and structure
>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88 Back     alignment and structure
>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76 Back     alignment and structure
>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83 Back     alignment and structure
>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81 Back     alignment and structure
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76 Back     alignment and structure
>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88 Back     alignment and structure
>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83 Back     alignment and structure
>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84 Back     alignment and structure
>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78 Back     alignment and structure
>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76 Back     alignment and structure
>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82 Back     alignment and structure
>pdb|2KLC|A Chain A, Nmr Solution Structure Of Human Ubiquitin-Like Domain Of Ubiquilin 1, Northeast Structural Genomics Consortium (Nesg) Target Ht5a Length = 101 Back     alignment and structure
>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77 Back     alignment and structure
>pdb|1J8C|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Hplic-2 Length = 125 Back     alignment and structure
>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88 Back     alignment and structure
>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85 Back     alignment and structure
>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81 Back     alignment and structure
>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85 Back     alignment and structure
>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95 Back     alignment and structure
>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84 Back     alignment and structure
>pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a Length = 368 Back     alignment and structure
>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76 Back     alignment and structure
>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81 Back     alignment and structure
>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78 Back     alignment and structure
>pdb|1WX8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The 4931431f19rik Protein Length = 96 Back     alignment and structure
>pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of Hhr23a Length = 78 Back     alignment and structure
>pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain Of Hhr23a (Human Homologue A Of Rad23) Length = 85 Back     alignment and structure
>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86 Back     alignment and structure
>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query958
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 3e-31
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 6e-30
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 6e-30
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 3e-29
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 3e-28
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 2e-27
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 6e-27
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 7e-26
3m62_B106 UV excision repair protein RAD23; armadillo-like r 8e-26
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 2e-25
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 2e-25
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 5e-25
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 2e-24
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 2e-23
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 9e-23
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 9e-23
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 2e-22
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 1e-21
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 2e-21
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 2e-21
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 3e-21
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 4e-21
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 8e-21
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 1e-20
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 2e-20
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 3e-20
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 4e-20
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 4e-20
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 5e-20
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 9e-20
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 1e-19
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 2e-19
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 2e-19
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 4e-19
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 5e-19
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 6e-19
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 2e-17
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 1e-16
1we6_A111 Splicing factor, putative; structural genomics, ub 2e-16
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 4e-16
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 5e-16
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 7e-16
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 4e-13
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 8e-16
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 1e-15
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 2e-15
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 2e-14
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 2e-14
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 2e-14
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 3e-14
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 7e-14
2xzm_9189 RPS31E; ribosome, translation; 3.93A {Tetrahymena 1e-13
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 2e-12
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 7e-12
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 2e-12
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 1e-11
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 6e-11
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 7e-11
2kj6_A97 Tubulin folding cofactor B; methods development, N 2e-10
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 2e-10
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 6e-10
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 8e-09
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 8e-07
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 1e-06
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 1e-06
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 1e-06
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 2e-06
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 5e-06
3kyd_D115 Small ubiquitin-related modifier 1; SUMO, thioeste 1e-05
2d07_B93 Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho 1e-05
2io0_B91 Small ubiquitin-related modifier 2 precursor; SUMO 2e-05
1wz0_A104 Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li 2e-05
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 3e-05
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 5e-05
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 7e-05
2io1_B94 Small ubiquitin-related modifier 3 precursor; SUMO 1e-04
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 1e-04
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 4e-04
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 4e-04
2fnj_B118 Transcription elongation factor B polypeptide 2; b 5e-04
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101 Back     alignment and structure
 Score =  117 bits (294), Expect = 3e-31
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 2   ADQYPNESSSTGNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV 61
           +  + + SS   N+  +    I+++ VKT   +   F V +N  V  FKE+I+       
Sbjct: 4   SHHHHHHSSGRENLYFQGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHT 62

Query: 62  GQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99
            Q  LIF GK+LKD+  LS++ + +G T+HLVI+   +
Sbjct: 63  DQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90 Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106 Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96 Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88 Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125 Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77 Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101 Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95 Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106 Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88 Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76 Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96 Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85 Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76 Back     alignment and structure
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225 Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87 Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98 Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85 Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78 Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76 Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111 Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114 Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94 Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85 Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79 Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84 Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85 Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115 Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128 Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111 Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96 Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159 Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159 Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169 Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102 Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93 Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93 Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368 Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95 Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307 Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189 Back     alignment and structure
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152 Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172 Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172 Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122 Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97 Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107 Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90 Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116 Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92 Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93 Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320 Back     alignment and structure
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} Length = 115 Back     alignment and structure
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Length = 93 Back     alignment and structure
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91 Back     alignment and structure
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104 Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95 Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Length = 95 Back     alignment and structure
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Length = 94 Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105 Back     alignment and structure
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Length = 79 Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query958
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 99.86
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 99.83
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 99.78
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 99.75
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 99.74
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 99.73
3v6c_B91 Ubiquitin; structural genomics, structural genomic 99.73
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 99.72
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 99.71
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 99.7
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 99.7
3m62_B106 UV excision repair protein RAD23; armadillo-like r 99.7
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 99.7
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 99.7
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 99.7
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 99.7
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 99.69
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 99.69
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 99.69
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 99.69
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 99.69
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 99.69
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 99.69
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 99.69
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 99.68
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 99.68
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 99.68
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 99.68
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 99.67
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 99.67
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 99.67
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 99.66
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 99.66
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 99.66
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 99.66
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 99.66
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 99.65
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 99.65
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 99.65
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 99.64
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 99.64
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 99.63
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 99.63
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 99.63
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 99.63
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 99.62
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 99.61
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 99.61
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 99.4
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 99.61
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 99.6
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 99.59
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 99.59
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 99.58
1we6_A111 Splicing factor, putative; structural genomics, ub 99.57
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 99.57
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 99.57
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 99.56
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 99.56
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 99.55
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 99.55
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 99.55
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 99.54
2daf_A118 FLJ35834 protein; hypothetical protein FLJ35834, u 99.54
4ajy_B118 Transcription elongation factor B polypeptide 2; E 99.54
2fnj_B118 Transcription elongation factor B polypeptide 2; b 99.54
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 99.53
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 99.53
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 99.52
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 99.52
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 99.51
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 99.5
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 99.5
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 99.49
4b6w_A86 Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik 99.44
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 99.44
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 99.44
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 99.41
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 99.4
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 99.39
2kj6_A97 Tubulin folding cofactor B; methods development, N 99.36
1wf9_A107 NPL4 family protein; beta-grAsp fold like domain, 99.35
2io1_B94 Small ubiquitin-related modifier 3 precursor; SUMO 99.34
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 99.33
2xzm_9189 RPS31E; ribosome, translation; 3.93A {Tetrahymena 99.29
2d07_B93 Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho 99.25
2io0_B91 Small ubiquitin-related modifier 2 precursor; SUMO 99.25
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 99.24
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 99.23
1wz0_A104 Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li 99.22
1wm3_A72 Ubiquitin-like protein SMT3B; ubiquitin fold, half 99.19
2eke_C106 Ubiquitin-like protein SMT3; UBC9, SUMO binding mo 99.18
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 99.17
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 99.16
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 99.15
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 99.01
3kyd_D115 Small ubiquitin-related modifier 1; SUMO, thioeste 98.93
3pge_A200 SUMO-modified proliferating cell nuclear antigen; 98.78
3tix_A207 Ubiquitin-like protein SMT3, RNA-induced transcri 98.71
3v7o_A227 Minor nucleoprotein VP30; ssgcid, seattle structur 98.4
2jxx_A97 Nfatc2-interacting protein; nuclear factor of acti 98.26
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 98.09
2pjh_A80 Protein NPL4, nuclear protein localization protein 98.09
3goe_A82 DNA repair protein RAD60; SUMO-like domain, sumoyl 97.98
3ix6_A360 TS, tsase, thymidylate synthase; niaid, ssgcid, se 97.97
2l76_A95 Nfatc2-interacting protein; ubiquitin-like domain, 97.81
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 97.79
4efo_A94 Serine/threonine-protein kinase TBK1; ubiquitin li 97.62
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 97.36
2bps_A81 YUKD protein; ubiquitin-like protein, ubiquitin; 2 97.14
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 96.95
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 96.93
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 96.59
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 95.97
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 95.51
2daj_A91 KIAA0977 protein, COBL-like 1; ubiquitin-like doma 95.21
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 95.21
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 95.18
4e71_A111 Plexin-B2, MM1; transmembrane, signaling, RBD, str 94.76
2r2o_A138 Plexin-B1; effector domain, structural genomics, s 94.47
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 94.29
2xzm_9189 RPS31E; ribosome, translation; 3.93A {Tetrahymena 93.86
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 93.26
4a3p_A217 Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H 92.96
4e74_A117 Plexin-A4; RBD, structural genomics, structural ge 91.95
3h6n_A127 Plexin-D1; structural genomics consortium, SGC, me 91.63
3jyu_A231 Ubiquitin carboxyl-terminal hydrolase; domain in u 91.58
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 91.1
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 91.05
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 89.08
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 88.95
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 88.3
4ajy_B118 Transcription elongation factor B polypeptide 2; E 88.52
2fnj_B118 Transcription elongation factor B polypeptide 2; b 87.99
1vjk_A98 Molybdopterin converting factor, subunit 1; struct 87.68
4b6w_A86 Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik 87.67
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 87.59
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 87.16
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 87.01
3kuz_A126 Plexin-C1; structural genomics, structural genomic 86.7
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 86.31
2kj6_A97 Tubulin folding cofactor B; methods development, N 85.79
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 84.87
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 84.31
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 84.08
3m62_B106 UV excision repair protein RAD23; armadillo-like r 83.83
3hm6_X644 Plexin-B1; structural genomics consortium, SGC, me 83.44
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 83.39
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 83.15
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 82.91
3ig3_A627 Plxna3 protein; plexin intracellular GAP RBD inact 82.11
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 81.25
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 80.94
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
Probab=99.86  E-value=9e-23  Score=198.60  Aligned_cols=129  Identities=34%  Similarity=0.434  Sum_probs=115.7

Q ss_pred             CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474           16 SGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR   95 (958)
Q Consensus        16 ~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR   95 (958)
                      ........|+|+||+++|++++|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++
T Consensus        13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~   92 (172)
T 3u30_A           13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   92 (172)
T ss_dssp             ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence            33445678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474           96 QPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA  162 (958)
Q Consensus        96 lp~~~q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa  162 (958)
                      .++.+..++++..+.+                  +.+.|.++++|..||.+|+ ++|+|++.|||+|.
T Consensus        93 ~~gg~~i~Vk~~~g~~------------------~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~  142 (172)
T 3u30_A           93 LRGGMQIFVKTLTGKT------------------ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA  142 (172)
T ss_dssp             CCCCEEEEEEESSCCE------------------EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred             ccccccceeecccCcc------------------eeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence            9999999887766533                  6689999999999999998 88999999999874
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Back     alignment and structure
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Back     alignment and structure
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Back     alignment and structure
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Back     alignment and structure
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Back     alignment and structure
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus} Back     alignment and structure
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} Back     alignment and structure
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Back     alignment and structure
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} Back     alignment and structure
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens} Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis} Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Back     alignment and structure
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} Back     alignment and structure
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A Back     alignment and structure
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Back     alignment and structure
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Back     alignment and structure
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A* Back     alignment and structure
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens} Back     alignment and structure
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Back     alignment and structure
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X* Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A* Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 958
d1wx9a173 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 9e-21
d1uela_95 d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol 1e-19
d1z2ma276 d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot 1e-19
d1bt0a_73 d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t 2e-19
d2bwfa173 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc 2e-19
d1ogwa_76 d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax 5e-19
d1wgha_116 d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous 6e-19
d1wh3a_87 d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like 1e-18
d2zeqa178 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin 2e-18
d1wgda_93 d.15.1.1 (A:) Homocysteine-responsive endoplasmic 3e-18
d1v2ya_105 d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik 5e-18
d2uyzb177 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human 1e-17
d1wiaa_95 d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201 1e-17
d1z2ma176 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei 2e-17
d1zkha186 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t 3e-17
d1v6ea_95 d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol 9e-17
d1wx8a183 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul 9e-17
d1ttna180 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit 1e-16
d1se9a_101 d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal 2e-16
d1uh6a_100 d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous 2e-16
d1oqya477 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h 3e-16
d1euvb_79 d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea 4e-16
d1wy8a176 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing 4e-16
d1yqba184 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien 7e-16
d1v5oa_102 d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu 2e-15
d2faza176 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing 2e-15
d1wjna_97 d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse 3e-15
d1j8ca_103 d.15.1.1 (A:) Ubiquitin-like N-terminal domain of 6e-15
d1t0ya_90 d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol 2e-14
d1wxva181 d.15.1.1 (A:7-87) Bag-family molecular chaperone r 7e-14
d1wgga_96 d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas 8e-14
d1x1ma194 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse 8e-14
d1v5ta_90 d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu 9e-14
d1m94a_73 d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 2e-12
d1wjua_100 d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human 6e-12
d1v86a_95 d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous 8e-12
d2c9wb1103 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) 1e-11
d1we6a_111 d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi 2e-08
d1wm3a_72 d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 2e-04
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (210), Expect = 9e-21
 Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYH 83
          +E+ VKTL+SQ  +F V   + V  FKE IA  + +P  +QRLI++G+VL+D+  L EY+
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 84 VENGHTLHLVIRQP 97
          V  G  +HLV R P
Sbjct: 61 V-GGKVIHLVERAP 73
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105 Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83 Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101 Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79 Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97 Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90 Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90 Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100 Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111 Back     information, alignment and structure
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query958
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 99.79
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 99.77
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 99.77
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 99.76
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 99.76
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 99.75
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 99.73
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 99.73
d1uela_95 Ubiquitin-like domain of Rad23 homolog B (Hhr23B) 99.72
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 99.72
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 99.7
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 99.69
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 99.68
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 99.68
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.68
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 99.68
d1oqya477 Ubiquitin-like domain of Rad23 homolog A (Hhr23a) 99.66
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 99.66
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 99.65
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 99.64
d1wgga_96 Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M 99.64
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 99.63
d1se9a_101 Hypothetical protein At3g01050 {Thale cress (Arabi 99.62
d1v2ya_105 Ubiquitin-like protein 3300001g02rik {Mouse (Mus m 99.6
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 99.6
d1v86a_95 hypothetical D7wsu128e protein {Mouse (Mus musculu 99.59
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 99.56
d1wgda_93 Homocysteine-responsive endoplasmic reticulum-resi 99.55
d1v5ta_90 8430435i17rik protein {Mouse (Mus musculus) [TaxId 99.52
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 99.45
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 99.41
d2c9wb1103 Elongin B {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 99.38
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 99.25
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 99.25
d1x1ma194 Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta 99.12
d1t0ya_90 Ubiquitin-like domain of tubulin folding cofactor 99.1
d1wm3a_72 SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} 98.39
d1wf9a194 NPL4-like protein 1 {Thale cress (Arabidopsis thal 97.77
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 96.5
d1h8ca_82 Fas-associated factor 1, Faf1 {Human (Homo sapiens 96.12
d1i42a_89 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 95.96
d1wj4a_124 Hypothetical protein KIAA0794 {Human (Homo sapiens 95.9
d2cr5a196 UBX domain-containing protein 6 (Reproduction 8) { 95.86
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 92.52
d1vjka_88 Molybdopterin synthase subunit MoaD {Pyrococcus fu 91.97
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 91.46
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 91.33
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 90.26
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 89.92
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 87.78
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 87.28
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 86.92
d1ef1a384 Moesin {Human (Homo sapiens) [TaxId: 9606]} 86.15
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 82.25
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 81.26
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=156.66  Aligned_cols=81  Identities=26%  Similarity=0.417  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474           20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ   99 (958)
Q Consensus        20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~   99 (958)
                      ....|+|+||+++|++++|+|++++||.+||++|++++|||+++|||+|+||+|+|+++|++|+|+++++|||+.|.+..
T Consensus         4 ~s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~g   83 (87)
T d1wh3a_           4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             C
Q 048474          100 S  100 (958)
Q Consensus       100 ~  100 (958)
                      +
T Consensus        84 p   84 (87)
T d1wh3a_          84 P   84 (87)
T ss_dssp             S
T ss_pred             C
Confidence            4
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure