Citrus Sinensis ID: 048501

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
GTHTFTKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEHHccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
GTHTFTKWLARsrqqgsppegrhhvsswpprqlgnstsatggvkkphcfrpgtVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLfedtnlctihtkrvtimpKDIQLARRIRGERA
Flexible Loop (DISEMBL)
gthtftkwlarsrqqgsppegrhhvsswpprqlgnstsatggvkkphcfrpgTVALREIRKYQKSTellirklpfQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCtihtkrvtimpkdiqlarrirgera
Low Complexity Region (SEG)
GTHTFTKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFqssavaalqeaaeaylvGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA
Disordered region (IsUnstruct)
**********************************************HCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLA********
Disordered Region (DISOPRED)
***TFTK**********************************************VALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE**
Disordered Region (DISEMBL)
GTHTFTKWLA*******************PRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA
Disordered Region (DISPRO)
*********************************************PHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GTHTFTKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q76MV0	136	Histone H3.2 OS=Nicotiana	N/A	no	0.930	0.977	0.797	1e-54
P69248	136	Histone H3.2 OS=Petroseli	N/A	no	0.930	0.977	0.797	1e-54
Q2RAD9	136	Histone H3.2 OS=Oryza sat	yes	no	0.930	0.977	0.797	1e-54
A2Y533	136	Histone H3.2 OS=Oryza sat	N/A	no	0.930	0.977	0.797	1e-54
P69246	136	Histone H3.2 OS=Zea mays	N/A	no	0.930	0.977	0.797	1e-54
Q71T45	136	Histone H3.2 OS=Euphorbia	N/A	no	0.930	0.977	0.797	1e-54
Q6LCK1	136	Histone H3.2 OS=Brassica	N/A	no	0.930	0.977	0.797	1e-54
Q6LBE3	136	Histone H3.2 OS=Asparagus	N/A	no	0.930	0.977	0.797	1e-54
P59226	136	Histone H3.2 OS=Arabidops	yes	no	0.930	0.977	0.797	1e-54
P08903	136	Histone H3.2 OS=Encephala	N/A	no	0.930	0.977	0.789	3e-54

>sp|Q76MV0|H32_TOBAC Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Nicotiana tabacum (taxid: 4097)

>sp|P69248|H32_PETCR Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Petroselinum crispum (taxid: 4043)

>sp|Q2RAD9|H32_ORYSJ Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y533|H32_ORYSI Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P69246|H32_MAIZE Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Zea mays (taxid: 4577)

>sp|Q71T45|H32_EUPES Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Euphorbia esula (taxid: 3993)

>sp|Q6LCK1|H32_BRANA Histone H3.2 OS=Brassica napus PE=2 SV=3

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Brassica napus (taxid: 3708)

>sp|Q6LBE3|H32_ASPOF Histone H3.2 OS=Asparagus officinalis PE=2 SV=3

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Asparagus officinalis (taxid: 4686)

>sp|P59226|H32_ARATH Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Arabidopsis thaliana (taxid: 3702)

>sp|P08903|H32_ENCAL Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2

 Score =  209 bits (533), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRRYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Encephalartos altensteinii (taxid: 3300)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
163914165	139	histon H3 protein [Vitis hybrid cultivar	0.944	0.971	0.823	1e-55
15232146	136	histone H3 [Arabidopsis thaliana] gi|152	0.930	0.977	0.797	1e-52
414587287	169	TPA: histone H3.2 [Zea mays]	0.930	0.786	0.797	1e-52
449436665	274	PREDICTED: uncharacterized protein LOC10	0.923	0.481	0.795	2e-52
391344312	277	PREDICTED: uncharacterized protein LOC10	0.965	0.498	0.741	2e-52
122045178	136	RecName: Full=Histone H3.2	0.930	0.977	0.789	2e-52
351722020	136	uncharacterized protein LOC100306416 [Gl	0.930	0.977	0.789	3e-52
224284663	136	unknown [Picea sitchensis]	0.930	0.977	0.789	3e-52
224865	135	histone H3	0.930	0.985	0.789	3e-52
294999388	136	histone H3 [Oryza sativa Indica Group]	0.916	0.963	0.764	3e-52

>gi|163914165|dbj|BAF95851.1| histon H3 protein [Vitis hybrid cultivar]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 115/136 (84%), Gaps = 1/136 (0%)

Query: 9   LARSRQ-QGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTE 67
           +AR+ Q  GSP EGR H      +    S  ATGGVKKPH FRPGTVALREIRKYQKSTE
Sbjct: 4   MARTMQLSGSPLEGRLHAKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 63

Query: 68  LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTI 127
           LLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRVTI
Sbjct: 64  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 123

Query: 128 MPKDIQLARRIRGERA 143
           MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232146|ref|NP_189372.1| histone H3 [Arabidopsis thaliana] gi|15238433|ref|NP_201339.1| histone H3 [Arabidopsis thaliana] gi|18390992|ref|NP_563838.1| histone H3 [Arabidopsis thaliana] gi|18416261|ref|NP_568227.1| histone H3 [Arabidopsis thaliana] gi|18416264|ref|NP_568228.1| histone H3 [Arabidopsis thaliana] gi|115441249|ref|NP_001044904.1| Os01g0866200 [Oryza sativa Japonica Group] gi|115458352|ref|NP_001052776.1| Os04g0419600 [Oryza sativa Japonica Group] gi|115464121|ref|NP_001055660.1| Os05g0438700 [Oryza sativa Japonica Group] gi|115466556|ref|NP_001056877.1| Os06g0160100 [Oryza sativa Japonica Group] gi|115484259|ref|NP_001065791.1| Os11g0155900 [Oryza sativa Japonica Group] gi|212721652|ref|NP_001131276.1| histone H3.2 [Zea mays] gi|297724495|ref|NP_001174611.1| Os06g0159501 [Oryza sativa Japonica Group] gi|297724499|ref|NP_001174613.1| Os06g0160001 [Oryza sativa Japonica Group] gi|224053380|ref|XP_002297791.1| histone H3 [Populus trichocarpa] gi|224057509|ref|XP_002299242.1| histone H3 [Populus trichocarpa] gi|224075758|ref|XP_002304754.1| histone H3 [Populus trichocarpa] gi|224106912|ref|XP_002333603.1| histone H3 [Populus trichocarpa] gi|224161995|ref|XP_002338397.1| histone H3 [Populus trichocarpa] gi|225431587|ref|XP_002282606.1| PREDICTED: histone H3.2 isoform 1 [Vitis vinifera] gi|225435522|ref|XP_002285556.1| PREDICTED: histone H3.2-like [Vitis vinifera] gi|225435526|ref|XP_002285562.1| PREDICTED: histone H3.2-like [Vitis vinifera] gi|225450203|ref|XP_002264961.1| PREDICTED: histone H3.2-like [Vitis vinifera] gi|225460686|ref|XP_002269800.1| PREDICTED: histone H3.2-like [Vitis vinifera] gi|242056349|ref|XP_002457320.1| hypothetical protein SORBIDRAFT_03g005550 [Sorghum bicolor] gi|242061890|ref|XP_002452234.1| hypothetical protein SORBIDRAFT_04g022160 [Sorghum bicolor] gi|242073044|ref|XP_002446458.1| hypothetical protein SORBIDRAFT_06g016330 [Sorghum bicolor] gi|242075820|ref|XP_002447846.1| hypothetical protein SORBIDRAFT_06g016850 [Sorghum bicolor] gi|242090679|ref|XP_002441172.1| hypothetical protein SORBIDRAFT_09g021650 [Sorghum bicolor] gi|242092064|ref|XP_002436522.1| hypothetical protein SORBIDRAFT_10g004110 [Sorghum bicolor] gi|242094758|ref|XP_002437869.1| hypothetical protein SORBIDRAFT_10g004100 [Sorghum bicolor] gi|255562996|ref|XP_002522502.1| histone h3, putative [Ricinus communis] gi|255567299|ref|XP_002524630.1| histone h3, putative [Ricinus communis] gi|255585756|ref|XP_002533558.1| histone h3, putative [Ricinus communis] gi|255585762|ref|XP_002533561.1| histone h3, putative [Ricinus communis] gi|255585766|ref|XP_002533563.1| histone h3, putative [Ricinus communis] gi|255585768|ref|XP_002533564.1| histone h3, putative [Ricinus communis] gi|297811141|ref|XP_002873454.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297811143|ref|XP_002873455.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297818324|ref|XP_002877045.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297849218|ref|XP_002892490.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297853534|ref|XP_002894648.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|359476951|ref|XP_003631918.1| PREDICTED: histone H3.2 isoform 2 [Vitis vinifera] gi|449448760|ref|XP_004142133.1| PREDICTED: histone H3.2-like [Cucumis sativus] gi|449476030|ref|XP_004154620.1| PREDICTED: histone H3.2-like isoform 1 [Cucumis sativus] gi|449476032|ref|XP_004154621.1| PREDICTED: histone H3.2-like isoform 2 [Cucumis sativus] gi|449489076|ref|XP_004158207.1| PREDICTED: histone H3.2-like [Cucumis sativus] gi|449520805|ref|XP_004167423.1| PREDICTED: histone H3.2-like [Cucumis sativus] gi|449533260|ref|XP_004173594.1| PREDICTED: histone H3.2-like [Cucumis sativus] gi|27805477|sp|P59226.2|H32_ARATH RecName: Full=Histone H3.2; AltName: Full=Histone H3.1 gi|59799552|sp|P69246.2|H32_MAIZE RecName: Full=Histone H3.2 gi|59799553|sp|P69248.2|H32_PETCR RecName: Full=Histone H3.2 gi|62286642|sp|Q71T45.3|H32_EUPES RecName: Full=Histone H3.2 gi|73919911|sp|Q6LBE3.3|H32_ASPOF RecName: Full=Histone H3.2 gi|73919912|sp|Q6LCK1.3|H32_BRANA RecName: Full=Histone H3.2 gi|75138727|sp|Q76MV0.1|H32_TOBAC RecName: Full=Histone H3.2 gi|122248843|sp|Q2RAD9.1|H32_ORYSJ RecName: Full=Histone H3.2 gi|158512928|sp|A2Y533.1|H32_ORYSI RecName: Full=Histone H3.2 gi|7595794|gb|AAF64452.1|AF239930_1 histone H3 [Euphorbia esula] gi|13926211|gb|AAK49583.1|AF370577_1 histone H3 [Arabidopsis thaliana] gi|20251|emb|CAA31969.1| unnamed protein product [Oryza sativa] gi|20253|emb|CAA31970.1| unnamed protein product [Oryza sativa] gi|168493|gb|AAA33471.1| histone H3 (H3C3) [Zea mays] gi|168495|gb|AAA33472.1| histone H3 [Zea mays] gi|168497|gb|AAA33473.1| histone H3 [Zea mays] gi|168506|gb|AAA66265.1| histone H3 [Zea mays] gi|169655|gb|AAA33852.1| histone H3 [Petroselinum crispum] gi|169657|gb|AAA33853.1| histone H3 [Petroselinum crispum] gi|169659|gb|AAA33854.1| histone H3 [Petroselinum crispum] gi|387565|gb|AAA32808.1| histone H3 [Arabidopsis thaliana] gi|387567|gb|AAA32809.1| histone H3 [Arabidopsis thaliana] gi|886738|emb|CAA59111.1| histone 3 [Zea mays] gi|1040764|gb|AAA79889.1| histone H3 [Arabidopsis thaliana] gi|1314779|gb|AAB67837.1| histone H3 homolog [Brassica napus] gi|1531754|emb|CAA57811.1| Histone H3 [Asparagus officinalis] gi|1667592|gb|AAB18816.1| histone 3 [Oryza sativa Indica Group] gi|3249101|gb|AAC24084.1| Match to histone H3 gene gb|M17131 and gb|M35387 from A. thaliana. ESTs gb|H76511 gb|H76255, gb|AA712452, gb|N65260 and gb|T42306 come from this gene [Arabidopsis thaliana] gi|5295939|dbj|BAA81840.1| histone H3 [Oryza sativa Japonica Group] gi|5295940|dbj|BAA81841.1| histone H3 [Oryza sativa Japonica Group] gi|7671463|emb|CAB89403.1| histone H3-like protein [Arabidopsis thaliana] gi|7671464|emb|CAB89404.1| histone H3-like protein [Arabidopsis thaliana] gi|7939509|dbj|BAA95712.1| histone H3-like protein [Arabidopsis thaliana] gi|9759616|dbj|BAB11558.1| histone H3 [Arabidopsis thaliana] gi|14335142|gb|AAK59851.1| AT3g27360/K1G2_6 [Arabidopsis thaliana] gi|14532560|gb|AAK64008.1| AT5g65360/MNA5_9 [Arabidopsis thaliana] gi|18655353|gb|AAL76132.1| AT3g27360/K1G2_6 [Arabidopsis thaliana] gi|19548061|gb|AAL87394.1| AT5g65360/MNA5_9 [Arabidopsis thaliana] gi|21536571|gb|AAM60903.1| histone H3-like protein [Arabidopsis thaliana] gi|21644654|dbj|BAC01212.1| histone H3 [Oryza sativa Japonica Group] gi|22324934|gb|AAM95675.1| histone H3 [Orobanche cernua var. cumana] gi|26449416|dbj|BAC41835.1| putative histone H3 [Arabidopsis thaliana] gi|27529854|dbj|BAC53942.1| H3 histone [Nicotiana tabacum] gi|27764990|gb|AAO23616.1| At5g10400 [Arabidopsis thaliana] gi|27808628|gb|AAO24594.1| At1g09200 [Arabidopsis thaliana] gi|28973783|gb|AAO64207.1| putative histone H3 [Arabidopsis thaliana] gi|29824185|gb|AAP04053.1| putative histone H3 [Arabidopsis thaliana] gi|32488365|emb|CAE02924.1| OSJNBb0108J11.17 [Oryza sativa Japonica Group] gi|46981297|gb|AAT07615.1| putative histone H3 [Oryza sativa Japonica Group] gi|52075995|dbj|BAD46448.1| histone H3 [Oryza sativa Japonica Group] gi|52076000|dbj|BAD46453.1| histone H3 [Oryza sativa Japonica Group] gi|52076001|dbj|BAD46454.1| histone H3 [Oryza sativa Japonica Group] gi|62701646|gb|AAX92719.1| histone H3 - maize [Oryza sativa Japonica Group] gi|72255621|gb|AAZ66939.1| 117M18_20 [Brassica rapa] gi|108864010|gb|ABA91537.2| Histone H3, putative, expressed [Oryza sativa Japonica Group] gi|110736757|dbj|BAF00340.1| histone H3 like protein [Arabidopsis thaliana] gi|110743434|dbj|BAE99603.1| histone H3 like protein [Arabidopsis thaliana] gi|110743612|dbj|BAE99643.1| histone H3 like protein [Arabidopsis thaliana] gi|113534435|dbj|BAF06818.1| Os01g0866200 [Oryza sativa Japonica Group] gi|113564347|dbj|BAF14690.1| Os04g0419600 [Oryza sativa Japonica Group] gi|113579211|dbj|BAF17574.1| Os05g0438700 [Oryza sativa Japonica Group] gi|113594917|dbj|BAF18791.1| Os06g0160100 [Oryza sativa Japonica Group] gi|113644495|dbj|BAF27636.1| Os11g0155900 [Oryza sativa Japonica Group] gi|116780664|gb|ABK21761.1| unknown [Picea sitchensis] gi|116790074|gb|ABK25492.1| unknown [Picea sitchensis] gi|118481843|gb|ABK92858.1| unknown [Populus trichocarpa] gi|118484038|gb|ABK93905.1| unknown [Populus trichocarpa] gi|118484134|gb|ABK93950.1| unknown [Populus trichocarpa] gi|118488137|gb|ABK95888.1| unknown [Populus trichocarpa] gi|125533457|gb|EAY80005.1| hypothetical protein OsI_35174 [Oryza sativa Indica Group] gi|125552484|gb|EAY98193.1| hypothetical protein OsI_20106 [Oryza sativa Indica Group] gi|125554171|gb|EAY99776.1| hypothetical protein OsI_21763 [Oryza sativa Indica Group] gi|125554174|gb|EAY99779.1| hypothetical protein OsI_21766 [Oryza sativa Indica Group] gi|125572756|gb|EAZ14271.1| hypothetical protein OsJ_04197 [Oryza sativa Japonica Group] gi|125590373|gb|EAZ30723.1| hypothetical protein OsJ_14783 [Oryza sativa Japonica Group] gi|125596123|gb|EAZ35903.1| hypothetical protein OsJ_20204 [Oryza sativa Japonica Group] gi|147809988|emb|CAN73758.1| hypothetical protein VITISV_031197 [Vitis vinifera] gi|147844088|emb|CAN80002.1| hypothetical protein VITISV_043973 [Vitis vinifera] gi|147855133|emb|CAN83843.1| hypothetical protein VITISV_044079 [Vitis vinifera] gi|147862092|emb|CAN80880.1| hypothetical protein VITISV_018649 [Vitis vinifera] gi|147862761|emb|CAN83194.1| hypothetical protein VITISV_010341 [Vitis vinifera] gi|151413349|gb|ABS11143.1| histone H3 [Nicotiana benthamiana] gi|156720295|dbj|BAF76800.1| histone H3.1 [Nicotiana tabacum] gi|192913026|gb|ACF06621.1| histone H3 [Elaeis guineensis] gi|194691056|gb|ACF79612.1| unknown [Zea mays] gi|194696296|gb|ACF82232.1| unknown [Zea mays] gi|194704326|gb|ACF86247.1| unknown [Zea mays] gi|194708694|gb|ACF88431.1| unknown [Zea mays] gi|195606614|gb|ACG25137.1| histone H3 [Zea mays] gi|195611030|gb|ACG27345.1| histone H3 [Zea mays] gi|195616454|gb|ACG30057.1| histone H3 [Zea mays] gi|195617288|gb|ACG30474.1| histone H3 [Zea mays] gi|195617742|gb|ACG30701.1| histone H3 [Zea mays] gi|195617754|gb|ACG30707.1| histone H3 [Zea mays] gi|195617922|gb|ACG30791.1| histone H3 [Zea mays] gi|195618240|gb|ACG30950.1| histone H3 [Zea mays] gi|195620208|gb|ACG31934.1| histone H3 [Zea mays] gi|195634985|gb|ACG36961.1| histone H3 [Zea mays] gi|195640334|gb|ACG39635.1| histone H3 [Zea mays] gi|195641210|gb|ACG40073.1| histone H3 [Zea mays] gi|195643030|gb|ACG40983.1| histone H3 [Zea mays] gi|195655633|gb|ACG47284.1| histone H3 [Zea mays] gi|196166894|gb|ACG70966.1| histone H3 [Ziziphus jujuba] gi|215768014|dbj|BAH00243.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197632|gb|EEC80059.1| hypothetical protein OsI_21765 [Oryza sativa Indica Group] gi|222615540|gb|EEE51672.1| hypothetical protein OsJ_33018 [Oryza sativa Japonica Group] gi|222837547|gb|EEE75912.1| histone H3 [Populus trichocarpa] gi|222842186|gb|EEE79733.1| histone H3 [Populus trichocarpa] gi|222845049|gb|EEE82596.1| histone H3 [Populus trichocarpa] gi|222846500|gb|EEE84047.1| histone H3 [Populus trichocarpa] gi|222872075|gb|EEF09206.1| histone H3 [Populus trichocarpa] gi|223526558|gb|EEF28815.1| histone h3, putative [Ricinus communis] gi|223526561|gb|EEF28818.1| histone h3, putative [Ricinus communis] gi|223526563|gb|EEF28820.1| histone h3, putative [Ricinus communis] gi|223526564|gb|EEF28821.1| histone h3, putative [Ricinus communis] gi|223536099|gb|EEF37755.1| histone h3, putative [Ricinus communis] gi|223538193|gb|EEF39802.1| histone h3, putative [Ricinus communis] gi|224029695|gb|ACN33923.1| unknown [Zea mays] gi|238012294|gb|ACR37182.1| unknown [Zea mays] gi|238012900|gb|ACR37485.1| unknown [Zea mays] gi|238013136|gb|ACR37603.1| unknown [Zea mays] gi|238013902|gb|ACR37986.1| unknown [Zea mays] gi|238014038|gb|ACR38054.1| unknown [Zea mays] gi|241914745|gb|EER87889.1| hypothetical protein SORBIDRAFT_10g004110 [Sorghum bicolor] gi|241916092|gb|EER89236.1| hypothetical protein SORBIDRAFT_10g004100 [Sorghum bicolor] gi|241929295|gb|EES02440.1| hypothetical protein SORBIDRAFT_03g005550 [Sorghum bicolor] gi|241932065|gb|EES05210.1| hypothetical protein SORBIDRAFT_04g022160 [Sorghum bicolor] gi|241937641|gb|EES10786.1| hypothetical protein SORBIDRAFT_06g016330 [Sorghum bicolor] gi|241939029|gb|EES12174.1| hypothetical protein SORBIDRAFT_06g016850 [Sorghum bicolor] gi|241946457|gb|EES19602.1| hypothetical protein SORBIDRAFT_09g021650 [Sorghum bicolor] gi|255676735|dbj|BAH93339.1| Os06g0159501 [Oryza sativa Japonica Group] gi|255676737|dbj|BAH93341.1| Os06g0160001 [Oryza sativa Japonica Group] gi|288812727|gb|ADC54261.1| histone H3 [Oryza sativa Japonica Group] gi|294461191|gb|ADE76159.1| unknown [Picea sitchensis] gi|294461568|gb|ADE76345.1| unknown [Picea sitchensis] gi|294461811|gb|ADE76464.1| unknown [Picea sitchensis] gi|294463779|gb|ADE77414.1| unknown [Picea sitchensis] gi|297319291|gb|EFH49713.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297319292|gb|EFH49714.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297322883|gb|EFH53304.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297338332|gb|EFH68749.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|297340490|gb|EFH70907.1| histone H3 [Arabidopsis lyrata subsp. lyrata] gi|312985287|gb|ADR30794.1| histone H3.1 [Hevea brasiliensis] gi|317106674|dbj|BAJ53177.1| JHL18I08.11 [Jatropha curcas] gi|332004152|gb|AED91535.1| histone H3 [Arabidopsis thaliana] gi|332004153|gb|AED91536.1| histone H3 [Arabidopsis thaliana] gi|332010660|gb|AED98043.1| histone H3 [Arabidopsis thaliana] gi|332190292|gb|AEE28413.1| histone H3 [Arabidopsis thaliana] gi|332643787|gb|AEE77308.1| histone H3 [Arabidopsis thaliana] gi|383100951|emb|CCD74495.1| histone H3 [Arabidopsis halleri subsp. halleri] gi|413918290|gb|AFW58222.1| histone H3.2 isoform 1 [Zea mays] gi|413918291|gb|AFW58223.1| histone H3.2 isoform 2 [Zea mays] gi|413918312|gb|AFW58244.1| histone H3.2 [Zea mays] gi|413922633|gb|AFW62565.1| histone H3.2 [Zea mays] gi|413942945|gb|AFW75594.1| histone H3.2 [Zea mays] gi|413953084|gb|AFW85733.1| histone H3.2 isoform 1 [Zea mays] gi|413953085|gb|AFW85734.1| histone H3.2 isoform 2 [Zea mays] gi|414587293|tpg|DAA37864.1| TPA: histone H3.2 [Zea mays] gi|414876272|tpg|DAA53403.1| TPA: histone H3.2 [Zea mays] gi|225459|prf||1303352A histone H3 gi|225839|prf||1314298B histone H3

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414587287|tpg|DAA37858.1| TPA: histone H3.2 [Zea mays]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 37  TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 91

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 92  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 151

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 152 TIMPKDIQLARRIRGERA 169

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436665|ref|XP_004136113.1| PREDICTED: uncharacterized protein LOC101209420 [Cucumis sativus]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 113/137 (82%), Gaps = 5/137 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGER 142
           TIMPKDIQLARRIRGER
Sbjct: 119 TIMPKDIQLARRIRGER 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391344312|ref|XP_003746445.1| PREDICTED: uncharacterized protein LOC100902368 [Metaseiulus occidentalis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 117/147 (79%), Gaps = 9/147 (6%)

Query: 1   GTHTF----TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVAL 56
           G H+F    TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVAL
Sbjct: 136 GAHSFAMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVAL 190

Query: 57  REIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTN 116
           REIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL FQSSAV ALQEA+EAYLVGLFEDTN
Sbjct: 191 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN 250

Query: 117 LCTIHTKRVTIMPKDIQLARRIRGERA 143
           LC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 251 LCAIHAKRVTIMPKDIQLARRIRGERA 277

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|122045178|sp|P08903.2|H32_ENCAL RecName: Full=Histone H3.2

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRRYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Source: Encephalartos altensteinii

Species: Encephalartos altensteinii

Genus: Encephalartos

Family: Zamiaceae

Order: Cycadales

Class: Cycadopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722020|ref|NP_001238509.1| uncharacterized protein LOC100306416 [Glycine max] gi|356512809|ref|XP_003525108.1| PREDICTED: histone H3.2-like [Glycine max] gi|356512811|ref|XP_003525109.1| PREDICTED: histone H3.2-like [Glycine max] gi|356521422|ref|XP_003529355.1| PREDICTED: histone H3.2-like [Glycine max] gi|356526362|ref|XP_003531787.1| PREDICTED: histone H3.2-like [Glycine max] gi|356526495|ref|XP_003531853.1| PREDICTED: histone H3.2-like [Glycine max] gi|356538929|ref|XP_003537953.1| PREDICTED: histone H3.2-like [Glycine max] gi|356541888|ref|XP_003539404.1| PREDICTED: histone H3.2-like [Glycine max] gi|356548652|ref|XP_003542714.1| PREDICTED: histone H3.2-like [Glycine max] gi|356556728|ref|XP_003546675.1| PREDICTED: histone H3.2-like [Glycine max] gi|357110762|ref|XP_003557185.1| PREDICTED: histone H3.2-like isoform 1 [Brachypodium distachyon] gi|357110764|ref|XP_003557186.1| PREDICTED: histone H3.2-like isoform 2 [Brachypodium distachyon] gi|357125196|ref|XP_003564281.1| PREDICTED: histone H3.2-like isoform 1 [Brachypodium distachyon] gi|357125198|ref|XP_003564282.1| PREDICTED: histone H3.2-like isoform 2 [Brachypodium distachyon] gi|357125200|ref|XP_003564283.1| PREDICTED: histone H3.2-like isoform 3 [Brachypodium distachyon] gi|357125202|ref|XP_003564284.1| PREDICTED: histone H3.2-like isoform 4 [Brachypodium distachyon] gi|357132777|ref|XP_003568005.1| PREDICTED: histone H3.2-like isoform 1 [Brachypodium distachyon] gi|357132779|ref|XP_003568006.1| PREDICTED: histone H3.2-like isoform 2 [Brachypodium distachyon] gi|357132781|ref|XP_003568007.1| PREDICTED: histone H3.2-like isoform 3 [Brachypodium distachyon] gi|357132783|ref|XP_003568008.1| PREDICTED: histone H3.2-like isoform 4 [Brachypodium distachyon] gi|357133509|ref|XP_003568367.1| PREDICTED: histone H3.2-like isoform 1 [Brachypodium distachyon] gi|357133511|ref|XP_003568368.1| PREDICTED: histone H3.2-like isoform 2 [Brachypodium distachyon] gi|357133513|ref|XP_003568369.1| PREDICTED: histone H3.2-like isoform 3 [Brachypodium distachyon] gi|357133987|ref|XP_003568601.1| PREDICTED: histone H3.2-like isoform 1 [Brachypodium distachyon] gi|357133989|ref|XP_003568602.1| PREDICTED: histone H3.2-like isoform 2 [Brachypodium distachyon] gi|357149385|ref|XP_003575094.1| PREDICTED: histone H3.2-like isoform 1 [Brachypodium distachyon] gi|357149388|ref|XP_003575095.1| PREDICTED: histone H3.2-like isoform 2 [Brachypodium distachyon] gi|357149391|ref|XP_003575096.1| PREDICTED: histone H3.2-like isoform 3 [Brachypodium distachyon] gi|357149393|ref|XP_003575097.1| PREDICTED: histone H3.2-like isoform 4 [Brachypodium distachyon] gi|357149396|ref|XP_003575098.1| PREDICTED: histone H3.2-like isoform 5 [Brachypodium distachyon] gi|357149399|ref|XP_003575099.1| PREDICTED: histone H3.2-like isoform 6 [Brachypodium distachyon] gi|357153574|ref|XP_003576496.1| PREDICTED: histone H3.2-like isoform 1 [Brachypodium distachyon] gi|357153577|ref|XP_003576497.1| PREDICTED: histone H3.2-like isoform 2 [Brachypodium distachyon] gi|357153580|ref|XP_003576498.1| PREDICTED: histone H3.2-like isoform 3 [Brachypodium distachyon] gi|357153582|ref|XP_003576499.1| PREDICTED: histone H3.2-like isoform 4 [Brachypodium distachyon] gi|357153585|ref|XP_003576500.1| PREDICTED: histone H3.2-like isoform 5 [Brachypodium distachyon] gi|357153588|ref|XP_003576501.1| PREDICTED: histone H3.2-like isoform 6 [Brachypodium distachyon] gi|357444381|ref|XP_003592468.1| Histone H3 [Medicago truncatula] gi|357485137|ref|XP_003612856.1| Histone H3 [Medicago truncatula] gi|357505385|ref|XP_003622981.1| Histone H3 [Medicago truncatula] gi|357516805|ref|XP_003628691.1| Histone H3 [Medicago truncatula] gi|357519793|ref|XP_003630185.1| Histone H3 [Medicago truncatula] gi|449446215|ref|XP_004140867.1| PREDICTED: histone H3.2-like [Cucumis sativus] gi|449499418|ref|XP_004160811.1| PREDICTED: histone H3.2-like [Cucumis sativus] gi|55977041|sp|P68427.2|H32_PEA RecName: Full=Histone H3.2 gi|55977043|sp|P68428.2|H32_WHEAT RecName: Full=Histone H3.2 gi|55977044|sp|P68429.2|H32_MEDSA RecName: Full=Histone H3.2; AltName: Full=Histone H3.1; AltName: Full=Major histone H3 gi|55977045|sp|P68430.2|H32_ONOVI RecName: Full=Histone H3.2 gi|19607|emb|CAA31964.1| unnamed protein product [Medicago sativa] gi|19609|emb|CAA31965.1| unnamed protein product [Medicago sativa] gi|21797|emb|CAA25451.1| unnamed protein product [Triticum aestivum] gi|488565|gb|AAB49545.1| histone H3.1 [Medicago sativa] gi|2565419|gb|AAB81995.1| histone H3 [Onobrychis viciifolia] gi|195605922|gb|ACG24791.1| histone H3 [Zea mays] gi|195611126|gb|ACG27393.1| histone H3 [Zea mays] gi|195622802|gb|ACG33231.1| histone H3 [Zea mays] gi|217075590|gb|ACJ86155.1| unknown [Medicago truncatula] gi|255628465|gb|ACU14577.1| unknown [Glycine max] gi|270315170|gb|ACZ74621.1| histone H3-like protein [Wolffia arrhiza] gi|294462026|gb|ADE76568.1| unknown [Picea sitchensis] gi|294462216|gb|ADE76659.1| unknown [Picea sitchensis] gi|326487552|dbj|BAK05448.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326493316|dbj|BAJ85119.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326495746|dbj|BAJ85969.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326516088|dbj|BAJ88067.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326527407|dbj|BAK07978.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326529361|dbj|BAK01074.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326529719|dbj|BAK04806.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|355481516|gb|AES62719.1| Histone H3 [Medicago truncatula] gi|355497996|gb|AES79199.1| Histone H3 [Medicago truncatula] gi|355514191|gb|AES95814.1| Histone H3 [Medicago truncatula] gi|355522713|gb|AET03167.1| Histone H3 [Medicago truncatula] gi|355524207|gb|AET04661.1| Histone H3 [Medicago truncatula] gi|388505574|gb|AFK40853.1| unknown [Medicago truncatula] gi|388506042|gb|AFK41087.1| unknown [Medicago truncatula] gi|388508840|gb|AFK42486.1| unknown [Medicago truncatula] gi|388509052|gb|AFK42592.1| unknown [Lotus japonicus] gi|388510014|gb|AFK43073.1| unknown [Medicago truncatula] gi|388517949|gb|AFK47036.1| unknown [Medicago truncatula] gi|413937164|gb|AFW71715.1| histone H3 [Zea mays] gi|413951815|gb|AFW84464.1| putative vesicle-associated membrane protein family protein [Zea mays]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAV+ALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224284663|gb|ACN40064.1| unknown [Picea sitchensis]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           T+LLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TDLLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224865|prf||1202289A histone H3

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 114/138 (82%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRRYQKS 57

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAVAALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 117

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

Source: Encephalartos sp.

Species: Encephalartos sp.

Genus: Encephalartos

Family: Zamiaceae

Order: Cycadales

Class: Cycadopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294999388|gb|ADF58429.1| histone H3 [Oryza sativa Indica Group]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 114/140 (81%), Gaps = 9/140 (6%)

Query: 9   LARSRQQGSPPEGRHHVSSWPPRQLG-----NSTSATGGVKKPHCFRPGTVALREIRKYQ 63
           +AR++Q      G       P +QLG      S  ATGGVKKPH FRPGTVALREIRKYQ
Sbjct: 1   MARTKQTARKSTG----GKAPRKQLGAKAARKSAPATGGVKKPHRFRPGTVALREIRKYQ 56

Query: 64  KSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTK 123
           KST++LIRKLPFQRLVREIAQDFKTDL+FQSSAVAAL EAAEAYLVGLFEDTNLC IH K
Sbjct: 57  KSTDMLIRKLPFQRLVREIAQDFKTDLYFQSSAVAALGEAAEAYLVGLFEDTNLCAIHAK 116

Query: 124 RVTIMPKDIQLARRIRGERA 143
           RVTIMPKDIQLARRIRGERA
Sbjct: 117 RVTIMPKDIQLARRIRGERA 136

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2195341	136	H3.1 "histone 3.1" [Arabidopsi	0.930	0.977	0.673	6.8e-40
TAIR|locus:2086696	136	H3.1 "histone 3.1" [Arabidopsi	0.930	0.977	0.673	6.8e-40
TAIR|locus:2142439	136	H3.1 "histone 3.1" [Arabidopsi	0.930	0.977	0.673	6.8e-40
TAIR|locus:2142424	136	H3.1 "histone 3.1" [Arabidopsi	0.930	0.977	0.673	6.8e-40
TAIR|locus:2168277	136	H3.1 "histone 3.1" [Arabidopsi	0.930	0.977	0.673	6.8e-40
UNIPROTKB|E1BGN3	136	LOC788077 "Histone H3" [Bos ta	0.944	0.992	0.657	2.3e-39
FB|FBgn0051613	136	His3:CG31613 "His3:CG31613" [D	0.930	0.977	0.659	3.7e-39
FB|FBgn0053803	136	His3:CG33803 "His3:CG33803" [D	0.930	0.977	0.659	3.7e-39
FB|FBgn0053806	136	His3:CG33806 "His3:CG33806" [D	0.930	0.977	0.659	3.7e-39
FB|FBgn0053809	136	His3:CG33809 "His3:CG33809" [D	0.930	0.977	0.659	3.7e-39

TAIR|locus:2195341 H3.1 "histone 3.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 93/138 (67%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=RCA

TAIR|locus:2086696 H3.1 "histone 3.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 93/138 (67%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006334 "nucleosome assembly" evidence=IEA

TAIR|locus:2142439 H3.1 "histone 3.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 93/138 (67%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006334 "nucleosome assembly" evidence=IEA

TAIR|locus:2142424 H3.1 "histone 3.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 93/138 (67%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006334 "nucleosome assembly" evidence=IEA

TAIR|locus:2168277 H3.1 "histone 3.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 93/138 (67%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH FRPGTVALREIRKYQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRFRPGTVALREIRKYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|E1BGN3 LOC788077 "Histone H3" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 92/140 (65%), Positives = 98/140 (70%)

Query:     4 TFTKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQ 63
             T TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQ
Sbjct:     2 TRTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQ 56

Query:    64 KSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTK 123
             KSTELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH K
Sbjct:    57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 116

Query:   124 RVTIMPKDIQLARRIRGERA 143
             RVTIMPKDIQLARRIRGERA
Sbjct:   117 RVTIMPKDIQLARRIRGERA 136

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

FB|FBgn0051613 His3:CG31613 "His3:CG31613" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 91/138 (65%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0006334 "nucleosome assembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IEA

FB|FBgn0053803 His3:CG33803 "His3:CG33803" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 91/138 (65%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053806 His3:CG33806 "His3:CG33806" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 91/138 (65%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053809 His3:CG33809 "His3:CG33809" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 91/138 (65%), Positives = 97/138 (70%)

Query:     6 TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
             TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct:     4 TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58

Query:    66 TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
             TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct:    59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118

Query:   126 TIMPKDIQLARRIRGERA 143
             TIMPKDIQLARRIRGERA
Sbjct:   119 TIMPKDIQLARRIRGERA 136

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P84235	H3_PLADU	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
Q402E1	H32_LILLO	No assigned EC number	0.7753	0.9300	0.9779	N/A	no
P84237	H3_TIGCA	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
P84236	H3_DROHY	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
P84231	H32_ICTBU	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
Q71DI3	H32_HUMAN	No assigned EC number	0.7681	0.9300	0.9779	yes	no
P84233	H32_XENLA	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
P84232	H32_PORAF	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
Q6LCK1	H32_BRANA	No assigned EC number	0.7971	0.9300	0.9779	N/A	no
Q64400	H32_CRILO	No assigned EC number	0.7608	0.9300	0.9779	N/A	no
P84239	H3_URECA	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
P84238	H3_CHITH	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
P69078	H3_SOLST	No assigned EC number	0.7608	0.9300	0.9779	N/A	no
Q6LBF0	H31_MUSPA	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
Q5MYA4	H32_CICIN	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
Q6LED0	H31_RAT	No assigned EC number	0.7681	0.9300	0.9779	no	no
P08437	H3_VOLCA	No assigned EC number	0.7753	0.9230	0.9777	N/A	no
P69076	H3_PSAMI	No assigned EC number	0.7608	0.9300	0.9779	N/A	no
P69077	H3_PYCHE	No assigned EC number	0.7608	0.9300	0.9779	N/A	no
P84230	H32_CAIMO	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
Q71T45	H32_EUPES	No assigned EC number	0.7971	0.9300	0.9779	N/A	no
Q6LCW8	H32_CHLRE	No assigned EC number	0.7753	0.9230	0.9777	N/A	no
Q4QRF4	H32_DANRE	No assigned EC number	0.7681	0.9300	0.9779	yes	no
P69079	H3_STRDR	No assigned EC number	0.7608	0.9300	0.9779	N/A	no
Q8WSF1	H33_TRIPS	No assigned EC number	0.7536	0.9300	0.9779	N/A	no
P68427	H32_PEA	No assigned EC number	0.7898	0.9300	0.9779	N/A	no
P59226	H32_ARATH	No assigned EC number	0.7971	0.9300	0.9779	yes	no
P69246	H32_MAIZE	No assigned EC number	0.7971	0.9300	0.9779	N/A	no
P84234	H32_ONCMY	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
P69248	H32_PETCR	No assigned EC number	0.7971	0.9300	0.9779	N/A	no
P68428	H32_WHEAT	No assigned EC number	0.7898	0.9300	0.9779	N/A	no
P68429	H32_MEDSA	No assigned EC number	0.7898	0.9300	0.9779	N/A	no
Q9FKQ3	H3L5_ARATH	No assigned EC number	0.7681	0.9300	0.9568	yes	no
Q28D37	H32_XENTR	No assigned EC number	0.7681	0.9300	0.9779	no	no
P02299	H3_DROME	No assigned EC number	0.7681	0.9300	0.9779	yes	no
P84227	H32_BOVIN	No assigned EC number	0.7681	0.9300	0.9779	yes	no
Q2RAD9	H32_ORYSJ	No assigned EC number	0.7971	0.9300	0.9779	yes	no
Q76MV0	H32_TOBAC	No assigned EC number	0.7971	0.9300	0.9779	N/A	no
P84228	H32_MOUSE	No assigned EC number	0.7681	0.9300	0.9779	yes	no
P84229	H32_CHICK	No assigned EC number	0.7681	0.9300	0.9779	yes	no
Q6LBE8	H32_MUSPA	No assigned EC number	0.7681	0.9300	0.9779	N/A	no
Q6LBE3	H32_ASPOF	No assigned EC number	0.7971	0.9300	0.9779	N/A	no
A2Y533	H32_ORYSI	No assigned EC number	0.7971	0.9300	0.9779	N/A	no
Q42681	H31_CHLRE	No assigned EC number	0.7681	0.9230	0.9777	N/A	no
P68431	H31_HUMAN	No assigned EC number	0.7681	0.9300	0.9779	yes	no
P68430	H32_ONOVI	No assigned EC number	0.7898	0.9300	0.9779	N/A	no
P68433	H31_MOUSE	No assigned EC number	0.7681	0.9300	0.9779	yes	no
P68432	H31_BOVIN	No assigned EC number	0.7681	0.9300	0.9779	yes	no
P08903	H32_ENCAL	No assigned EC number	0.7898	0.9300	0.9779	N/A	no
P22843	H3_ACRFO	No assigned EC number	0.75	0.9160	0.9632	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
PTZ00018	136	PTZ00018, PTZ00018, histone H3; Provisional	1e-69
PLN00121	136	PLN00121, PLN00121, histone H3; Provisional	3e-61
smart00428	105	smart00428, H3, Histone H3	3e-59
PLN00161	135	PLN00161, PLN00161, histone H3; Provisional	1e-41
PLN00160	97	PLN00160, PLN00160, histone H3; Provisional	3e-38
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	1e-32
COG2036	91	COG2036, HHT1, Histones H3 and H4 [Chromatin struc	8e-32

>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional

 Score =  205 bits (524), Expect = 1e-69
 Identities = 105/138 (76%), Positives = 112/138 (81%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  ++S   R+   S   TGG+KKPH +RPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLASKAARK---SAPVTGGIKKPHRYRPGTVALREIRRYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAV ALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGER+
Sbjct: 119 TIMPKDIQLARRIRGERS 136

Length = 136

>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional

 Score =  184 bits (468), Expect = 3e-61
 Identities = 108/138 (78%), Positives = 113/138 (81%), Gaps = 5/138 (3%)

Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIRKYQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRKYQKS 58

Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL FQSSAV ALQEAAEAYLVGLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

Length = 136

>gnl|CDD|128705 smart00428, H3, Histone H3

 Score =  178 bits (453), Expect = 3e-59
 Identities = 85/105 (80%), Positives = 88/105 (83%), Gaps = 2/105 (1%)

Query: 41  GGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT--DLWFQSSAVA 98
           GG  K   +RPG VALREIRKYQKST+LLIRK PFQRLVREIAQ F T  DL FQSSA+ 
Sbjct: 1   GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIM 60

Query: 99  ALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
           ALQEAAEAYLVGLFEDTNL  IH KRVTIMPKDIQLARRIRGER 
Sbjct: 61  ALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGERL 105

Length = 105

>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional

 Score =  134 bits (339), Expect = 1e-41
 Identities = 73/122 (59%), Positives = 88/122 (72%), Gaps = 1/122 (0%)

Query: 20  EGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLV 79
           +G+       P++  +  +     KKPH +RPGTVALREIRKYQKSTELLIRKLPF RLV
Sbjct: 6   QGKRFRKGKKPQKEASGVTRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLV 65

Query: 80  REIAQDFKTD-LWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI 138
           REI+ +   +   + + A+ ALQEA E +LV LFED NLC IH KRVTIMPKD+QLARRI
Sbjct: 66  REISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRI 125

Query: 139 RG 140
           RG
Sbjct: 126 RG 127

Length = 135

>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional

 Score =  125 bits (314), Expect = 3e-38
 Identities = 65/93 (69%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 50  RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLW-FQSSAVAALQEAAEAYL 108
           RPG  AL+EI+ YQKST+LLIR+LPF RLVREI  +   + + +Q SA+ ALQEAAEA+L
Sbjct: 2   RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHL 61

Query: 109 VGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141
           VGLFED+NLC IH KRVTIMPKD+QLARRIRG+
Sbjct: 62  VGLFEDSNLCAIHGKRVTIMPKDMQLARRIRGQ 94

Length = 97

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score =  109 bits (276), Expect = 1e-32
 Identities = 38/75 (50%), Positives = 46/75 (61%)

Query: 65  STELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKR 124
           S+ LLI KLPF R+VRE+ + F  +L   S A  ALQEA E  L  + ED  L   H KR
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 125 VTIMPKDIQLARRIR 139
            TI P+DIQLA R+ 
Sbjct: 61  KTITPRDIQLAVRLD 75

Length = 75

>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics]

 Score =  108 bits (272), Expect = 8e-32
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 51  PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVG 110
           PG V L+EIR+YQ+ST+LL+ K P +R++R+   +        SSA+  LQEA E YL  
Sbjct: 1   PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEE 55

Query: 111 LFEDTNLCTIHTKRVTIMPKDIQLARRIRGER 142
           + ED      H KR T+  +DI+LA +  G R
Sbjct: 56  IAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PLN00161	135	histone H3; Provisional	100.0
PTZ00018	136	histone H3; Provisional	100.0
PLN00121	136	histone H3; Provisional	100.0
KOG1745	137	consensus Histones H3 and H4 [Chromatin structure	100.0
smart00428	105	H3 Histone H3.	100.0
PLN00160	97	histone H3; Provisional	100.0
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	99.92
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.84
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	99.24
PLN00158	116	histone H2B; Provisional	98.74
PTZ00463	117	histone H2B; Provisional	98.72
smart00427	89	H2B Histone H2B.	98.7
cd00076	85	H4 Histone H4, one of the four histones, along wit	98.53
PLN00035	103	histone H4; Provisional	98.42
KOG1744	127	consensus Histone H2B [Chromatin structure and dyn	98.39
PTZ00015	102	histone H4; Provisional	98.39
smart00803	65	TAF TATA box binding protein associated factor. TA	98.39
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	98.31
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	98.28
smart00417	74	H4 Histone H4.	98.01
PF15630	76	CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C	97.91
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	97.69
PF02969	66	TAF: TATA box binding protein associated factor (T	97.56
PF02291	129	TFIID-31kDa: Transcription initiation factor IID,	97.51
smart00576	77	BTP Bromodomain transcription factors and PHD doma	97.51
KOG0870	172	consensus DNA polymerase epsilon, subunit D [Trans	97.46
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	97.33
PF15511	414	CENP-T: Centromere kinetochore component CENP-T; P	97.2
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	97.03
KOG1142	258	consensus Transcription initiation factor TFIID, s	96.8
KOG3334	148	consensus Transcription initiation factor TFIID, s	95.5
PF07524	77	Bromo_TP: Bromodomain associated; InterPro: IPR006	94.88
PF02269	93	TFIID-18kDa: Transcription initiation factor IID,	88.23
COG5262	132	HTA1 Histone H2A [Chromatin structure and dynamics	87.8
KOG3467	103	consensus Histone H4 [Chromatin structure and dyna	86.19
KOG0869	168	consensus CCAAT-binding factor, subunit A (HAP3) [	85.14
KOG0871	156	consensus Class 2 transcription repressor NC2, bet	83.05
smart00414	106	H2A Histone 2A.	81.94
KOG2549	576	consensus Transcription initiation factor TFIID, s	81.71
COG5094	145	TAF9 Transcription initiation factor TFIID, subuni	81.44
PLN00154	136	histone H2A; Provisional	80.57
cd08045	212	TAF4 TATA Binding Protein (TBP) Associated Factor	80.08

>PLN00161 histone H3; Provisional

Probab=100.00  E-value=4.5e-58  Score=348.35  Aligned_cols=128  Identities=59%  Similarity=0.846  Sum_probs=119.7

Q ss_pred             hhccccCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhh-
Q 048501            9 LARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-   87 (143)
Q Consensus         9 MartK~ta~k~~~~~~~~kaprk~~~ks~p~~~~~k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~-   87 (143)
                      ||||||+ +++++    ||.|+|++... ...+++++++||+||++||+|||+||+||+|||||+||+||||||++++. 
T Consensus         1 mar~k~~-~~~~~----~~~~~~~~~~~-~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~~   74 (135)
T PLN00161          1 MARRLQG-KRFRK----GKKPQKEASGV-TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEMLR   74 (135)
T ss_pred             CCccccc-ccccC----CCCCcccCCCC-CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcCC
Confidence            9999999 67777    88899888643 45577899999999999999999999999999999999999999999996 


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501           88 TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus        88 ~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      +++|||++||+|||||+|+|||+||||+|+||+||||||||++||+||.+|||+.
T Consensus        75 ~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~  129 (135)
T PLN00161         75 EPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPI  129 (135)
T ss_pred             CCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccc
Confidence            5899999999999999999999999999999999999999999999999999975

>PTZ00018 histone H3; Provisional

Probab=100.00  E-value=5.6e-58  Score=348.68  Aligned_cols=130  Identities=79%  Similarity=1.155  Sum_probs=123.1

Q ss_pred             hhccccCCCCCCCCCCCCCCCCCcCC-----CCCCCCCCCCCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHH
Q 048501            9 LARSRQQGSPPEGRHHVSSWPPRQLG-----NSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA   83 (143)
Q Consensus         9 MartK~ta~k~~~~~~~~kaprk~~~-----ks~p~~~~~k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~   83 (143)
                      |||||+++++++|    +++|+++++     ++.+..++.++++||+||++||+|||+||+||+|||||+||+||||||+
T Consensus         1 MaRtk~~~~k~~~----~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~   76 (136)
T PTZ00018          1 MARTKQTARKSTG----GKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIA   76 (136)
T ss_pred             CCCCCcCccCCCC----CCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHH
Confidence            9999999999999    899998886     3344557788999999999999999999999999999999999999999


Q ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501           84 QDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus        84 ~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      +++.+++|||++||+|||||+|+|||+||||+|+||+||||||||++||+|++||||++
T Consensus        77 ~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~  135 (136)
T PTZ00018         77 QDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER  135 (136)
T ss_pred             HHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence            99999999999999999999999999999999999999999999999999999999986

>PLN00121 histone H3; Provisional

Probab=100.00  E-value=7.8e-58  Score=347.88  Aligned_cols=131  Identities=82%  Similarity=1.160  Sum_probs=123.8

Q ss_pred             hhccccCCCCCCCCCCCCCCCCCcCC-----CCCCCCCCCCCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHH
Q 048501            9 LARSRQQGSPPEGRHHVSSWPPRQLG-----NSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA   83 (143)
Q Consensus         9 MartK~ta~k~~~~~~~~kaprk~~~-----ks~p~~~~~k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~   83 (143)
                      |||||+++++++|    +++|+++++     ++.+..++.++++||+||++||+|||+||+||+|||||+||+||||||+
T Consensus         1 MaRtk~~~~k~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~   76 (136)
T PLN00121          1 MARTKQTARKSTG----GKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA   76 (136)
T ss_pred             CCCCCcCccCCCC----CCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHH
Confidence            9999999999999    999999886     3344567789999999999999999999999999999999999999999


Q ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccCC
Q 048501           84 QDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA  143 (143)
Q Consensus        84 ~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~~  143 (143)
                      +++.+++|||++||+|||||+|+|||+||||+|+||+||||||||++||+|+++|||++.
T Consensus        77 ~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~~  136 (136)
T PLN00121         77 QDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA  136 (136)
T ss_pred             HHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccccC
Confidence            999999999999999999999999999999999999999999999999999999999863

>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]

Probab=100.00  E-value=6.4e-55  Score=331.50  Aligned_cols=131  Identities=79%  Similarity=1.135  Sum_probs=123.1

Q ss_pred             hhccccCCCCCCCCCCCCCCCCCcCC-CCCC-----CCCCCCCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHH
Q 048501            9 LARSRQQGSPPEGRHHVSSWPPRQLG-NSTS-----ATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREI   82 (143)
Q Consensus         9 MartK~ta~k~~~~~~~~kaprk~~~-ks~p-----~~~~~k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI   82 (143)
                      |+|++++++++.+    +++|++.++ ++..     ..+..++++||+||+++++|||+||+||||||+|+||+|||+||
T Consensus         1 m~r~~~t~~k~~~----~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei   76 (137)
T KOG1745|consen    1 MARTKQTARKSTG----GKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREI   76 (137)
T ss_pred             CCCCCcccccccC----CCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHH
Confidence            8999999999999    999999988 3332     23567889999999999999999999999999999999999999


Q ss_pred             HHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccCC
Q 048501           83 AQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA  143 (143)
Q Consensus        83 ~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~~  143 (143)
                      +++|.+|+|||+.||.|||||+|+|||+||||+|+||+|||||||||+|||||++|||++.
T Consensus        77 ~q~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~~~  137 (137)
T KOG1745|consen   77 AQDFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA  137 (137)
T ss_pred             HhcccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999863

>smart00428 H3 Histone H3

Probab=100.00  E-value=5.4e-50  Score=293.67  Aligned_cols=101  Identities=83%  Similarity=1.155  Sum_probs=98.5

Q ss_pred             CCCCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhhc--cccchHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 048501           42 GVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT--DLWFQSSAVAALQEAAEAYLVGLFEDTNLCT  119 (143)
Q Consensus        42 ~~k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~~--~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a  119 (143)
                      ++++|+||+||++||+|||+||+||++||||+||+||||||++++.+  ++|||++|++||||++|+|||++|||||+||
T Consensus         2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a   81 (105)
T smart00428        2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLA   81 (105)
T ss_pred             CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999987  9999999999999999999999999999999


Q ss_pred             hccCccccCcccHHHHHHHhccC
Q 048501          120 IHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus       120 ~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      +||||||||++||+||.+|||++
T Consensus        82 ~HAkRvTl~~kDi~La~rir~~~  104 (105)
T smart00428       82 IHAKRVTIMPKDIQLARRIRGER  104 (105)
T ss_pred             HHhCCccCcHhhHHHHHHHhccC
Confidence            99999999999999999999985

>PLN00160 histone H3; Provisional

Probab=100.00  E-value=8.1e-50  Score=289.08  Aligned_cols=94  Identities=69%  Similarity=1.044  Sum_probs=91.2

Q ss_pred             CCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhh-ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccc
Q 048501           49 FRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTI  127 (143)
Q Consensus        49 ~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~-~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi  127 (143)
                      |+||++||+|||+||+||++||||+||+||||||++++. +++|||++||+|||||||+|||+||||+|+||+|||||||
T Consensus         1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl   80 (97)
T PLN00160          1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTI   80 (97)
T ss_pred             CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence            689999999999999999999999999999999999986 5699999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHhccC
Q 048501          128 MPKDIQLARRIRGER  142 (143)
Q Consensus       128 ~~kDiqLa~rirg~~  142 (143)
                      |+||||||++|||+.
T Consensus        81 ~~kD~~L~~rirg~~   95 (97)
T PLN00160         81 MPKDMQLARRIRGQT   95 (97)
T ss_pred             chhhHHHHHHhhccc
Confidence            999999999999974

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=99.92  E-value=7.9e-26  Score=162.24  Aligned_cols=87  Identities=45%  Similarity=0.674  Sum_probs=84.0

Q ss_pred             CCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcc
Q 048501           51 PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPK  130 (143)
Q Consensus        51 pgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~k  130 (143)
                      ||+++++|||+||++++++||++||+|++|+...+     ||+.+|+++||++.|.|++.++|+|+.||.|++|+||+++
T Consensus         1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~   75 (91)
T COG2036           1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAE   75 (91)
T ss_pred             CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence            68999999999999999999999999999999886     9999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhccC
Q 048501          131 DIQLARRIRGER  142 (143)
Q Consensus       131 DiqLa~rirg~~  142 (143)
                      ||+|+.+.+|..
T Consensus        76 DI~la~~~~~~~   87 (91)
T COG2036          76 DIKLALKRLGRR   87 (91)
T ss_pred             HHHHHHHHhccc
Confidence            999999999853

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.84  E-value=1.6e-21  Score=132.16  Aligned_cols=75  Identities=44%  Similarity=0.612  Sum_probs=71.9

Q ss_pred             hhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           65 STELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        65 st~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      +|.++|++.||.|+++||..++..++||+++|+.+||+++|+|++.+||+|+.||.|+||+||+++||++|.+|+
T Consensus         1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~   75 (75)
T PF00125_consen    1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID   75 (75)
T ss_dssp             HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred             CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence            467899999999999999999888899999999999999999999999999999999999999999999999985

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=99.24  E-value=1.7e-11  Score=83.89  Aligned_cols=59  Identities=22%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           79 VREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        79 VrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +.|.+.++.+..|++.+|.++||+.+|+|+..++++|..||.|++|.||.++||+|+..
T Consensus         7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~   65 (72)
T cd07981           7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLE   65 (72)
T ss_pred             HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            34445555567999999999999999999999999999999999999999999999864

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>PLN00158 histone H2B; Provisional

Probab=98.74  E-value=2.3e-08  Score=74.76  Aligned_cols=69  Identities=13%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      ++..|..+|+.|+.++++|+.+++.||..|.....+++.++-.+|..++.+.+|-||+++|||.+.||.
T Consensus        25 r~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv   93 (116)
T PLN00158         25 KTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI   93 (116)
T ss_pred             ccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence            467899999999999999999999999999999999999999999999999999999999999999985

>PTZ00463 histone H2B; Provisional

Probab=98.72  E-value=2.4e-08  Score=74.70  Aligned_cols=68  Identities=12%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             cCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           72 KLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        72 k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      +..|..+|+.++.++++|+.+++.||..|.....+++.++-.+|..++.+.+|-||+++|||.+.||.
T Consensus        27 ~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl   94 (117)
T PTZ00463         27 YDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV   94 (117)
T ss_pred             cchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence            45699999999999999999999999999999999999999999999999999999999999999985

>smart00427 H2B Histone H2B

Probab=98.70  E-value=4.1e-08  Score=70.46  Aligned_cols=66  Identities=14%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             ccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           74 PFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        74 pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      .|..+|+.|+.++++|..+++.||..|...+.+++.++-.+|..++.+.||-||.++|||.|.||.
T Consensus         2 sy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~   67 (89)
T smart00427        2 TYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI   67 (89)
T ss_pred             cHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999985

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=98.53  E-value=1.4e-07  Score=67.17  Aligned_cols=69  Identities=23%  Similarity=0.268  Sum_probs=62.8

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      --||+.|..||+|.-     .--|++.+|.+.+.++.|.||..+..||...|-||+|.||+..||.++.+-.|.
T Consensus        12 ~gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~   80 (85)
T cd00076          12 KGITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR   80 (85)
T ss_pred             ccCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCC
Confidence            348999999998854     347999999999999999999999999999999999999999999999998885

>PLN00035 histone H4; Provisional

Probab=98.42  E-value=3.7e-07  Score=67.14  Aligned_cols=67  Identities=21%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      ||+.|-.||.|.-     .--|++.+|.+.|.++.|.||..+..||...|-||+|.||+..||.+|.+-.|.
T Consensus        30 ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~   96 (103)
T PLN00035         30 ITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR   96 (103)
T ss_pred             CCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence            8899988888754     247999999999999999999999999999999999999999999999988775

>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]

Probab=98.39  E-value=6e-07  Score=68.15  Aligned_cols=70  Identities=21%  Similarity=0.270  Sum_probs=67.3

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      ..+..|..+|+.++.++++|+.+.+.|+.+|.....+++.++...|+++|.+.||-||..+|||+|.+|.
T Consensus        34 ~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl  103 (127)
T KOG1744|consen   34 RRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL  103 (127)
T ss_pred             cccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence            4788899999999999999999999999999999999999999999999999999999999999999985

>PTZ00015 histone H4; Provisional

Probab=98.39  E-value=4.2e-07  Score=66.70  Aligned_cols=69  Identities=20%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      .-|++.|-.||++.-     .--|++.+|.+.+.++.|.||..+..||..+|-||+|.||+..||.+|.+-.|.
T Consensus        29 ~gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~   97 (102)
T PTZ00015         29 RGITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR   97 (102)
T ss_pred             cCCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence            348898888888754     347999999999999999999999999999999999999999999999988775

>smart00803 TAF TATA box binding protein associated factor

Probab=98.39  E-value=5.9e-07  Score=60.67  Aligned_cols=63  Identities=21%  Similarity=0.256  Sum_probs=52.6

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|+.|..|+.    ...+-. +.+.+|...|.+..|.++-.+.++|..++.|+||.||++.||.+|.+
T Consensus         3 ~p~~~i~ria----~~~Gi~-ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803        3 LPKETIKDVA----ESLGIG-NLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             CCHHHHHHHH----HHCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            4555554444    444333 89999999999999999999999999999999999999999999863

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=98.31  E-value=1.6e-06  Score=64.57  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=59.1

Q ss_pred             chhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           76 QRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        76 ~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      .++|..|+.+.+ -.+++..|+..|-|.++.|...+..||...|-||+|.||...||+||...++.
T Consensus         4 ~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~   68 (117)
T cd07979           4 ARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD   68 (117)
T ss_pred             HHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence            467888888653 35899999999999999999999999999999999999999999999998875

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=98.28  E-value=2.1e-06  Score=56.86  Aligned_cols=58  Identities=28%  Similarity=0.288  Sum_probs=49.4

Q ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHH
Q 048501           79 VREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLAR  136 (143)
Q Consensus        79 VrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~  136 (143)
                      |+.|++....+.+++.+|+.+|+.++|.|+..|-.+|+..+-+.+|-||++.||..|.
T Consensus         8 vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen    8 VKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             HHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            4556665555678999999999999999999999999999999999999999998763

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>smart00417 H4 Histone H4

Probab=98.01  E-value=3.8e-06  Score=58.40  Aligned_cols=62  Identities=19%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHH
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQL  134 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqL  134 (143)
                      .-||+.|..||+|.=     .--|++.++.+.|.++.|.||..+..||..+|-|++|.||+..|+..
T Consensus        12 ~gI~k~~IrRLaRr~-----GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~   73 (74)
T smart00417       12 QGITKPAIRRLARRG-----GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY   73 (74)
T ss_pred             cCCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence            348999999998743     34699999999999999999999999999999999999999999853

>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C

Probab=97.91  E-value=1e-05  Score=56.35  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             cchhHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           75 FQRLVREIAQDF--KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        75 F~RLVrEI~~~~--~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +.--|-+|+++.  ..++.|++..|.+|-|.+=.++..+-.|--..|-||+|.||++.|+.|..|
T Consensus         7 l~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R   71 (76)
T PF15630_consen    7 LWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR   71 (76)
T ss_dssp             HHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence            344566777766  367899999999999999999999999999999999999999999999754

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=97.69  E-value=0.0001  Score=50.26  Aligned_cols=58  Identities=19%  Similarity=0.220  Sum_probs=45.7

Q ss_pred             HHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           80 REIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        80 rEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      .|++.++.++..+..++.++|.+.|++|+.+..+.|-.+|.|.+--||.++|+|+...
T Consensus         6 ~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le   63 (68)
T PF03847_consen    6 QELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE   63 (68)
T ss_dssp             HHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            3444555788999999999999999999999999999999999999999999999853

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=97.56  E-value=0.00023  Score=48.41  Aligned_cols=59  Identities=27%  Similarity=0.316  Sum_probs=47.2

Q ss_pred             hHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           78 LVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        78 LVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      -|+-|++.++- -..+.++..+|.+-+|.-|-.+.++|..++.|+||-++++.||..|.|
T Consensus         8 svk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen    8 SVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             HHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            46777776652 136889999999999999999999999999999999999999999875

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=97.51  E-value=0.00025  Score=53.95  Aligned_cols=65  Identities=26%  Similarity=0.341  Sum_probs=53.0

Q ss_pred             chhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           76 QRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        76 ~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      .++|..|+.+.+- ..|+..++.-|-|.+=.|...+++||...|-||+|.+|...|++||...|..
T Consensus        15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~   79 (129)
T PF02291_consen   15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLD   79 (129)
T ss_dssp             HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT--
T ss_pred             HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHh
Confidence            4788888887753 2479999999999999999999999999999999999999999999887643

TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=97.51  E-value=0.00021  Score=49.09  Aligned_cols=51  Identities=24%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           91 WFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        91 rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      +.+.+|++.|.+..|.|+..|-+.+...+-|++|.++.+.|+.++..--|.
T Consensus        23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi   73 (77)
T smart00576       23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI   73 (77)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence            789999999999999999999999999999999999999999999766553

subdomain of archael histone-like transcription factors

>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]

Probab=97.46  E-value=0.00014  Score=57.58  Aligned_cols=69  Identities=25%  Similarity=0.270  Sum_probs=63.9

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      ++.+|..--.|||+|++.+.  ++-++.+|..||+.+|--|+.-|--.|+-.|.-.+|-||++.|+-=++.
T Consensus         8 dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~   76 (172)
T KOG0870|consen    8 DLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD   76 (172)
T ss_pred             HhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence            67889999999999999976  7899999999999999999999999999999999999999999876553

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.33  E-value=0.00053  Score=58.95  Aligned_cols=64  Identities=20%  Similarity=0.255  Sum_probs=56.6

Q ss_pred             hhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           77 RLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        77 RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      ..|+.|++..+- -+...+|..+|-+-+|.++-.+.++|..+|.|+||.||+..||++|.+.++.
T Consensus         3 ~~i~~ia~~~Gi-~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~   66 (343)
T cd08050           3 ESIKLIAESLGI-DSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNV   66 (343)
T ss_pred             hHHHHHHHHcCC-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCC
Confidence            357777775542 2789999999999999999999999999999999999999999999999864

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T

Probab=97.20  E-value=0.00045  Score=60.94  Aligned_cols=56  Identities=27%  Similarity=0.388  Sum_probs=43.7

Q ss_pred             chhHHHHHHhh-----hccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCccc
Q 048501           76 QRLVREIAQDF-----KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKD  131 (143)
Q Consensus        76 ~RLVrEI~~~~-----~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kD  131 (143)
                      +-+|+.+++.|     ....++..+||.+|+.|+|-|+.+|-+|-...|-||+|.||...|
T Consensus       354 ~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD  414 (414)
T PF15511_consen  354 PGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD  414 (414)
T ss_dssp             HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred             ccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence            34567777666     257899999999999999999999999999999999999998776

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=97.03  E-value=0.0005  Score=51.34  Aligned_cols=67  Identities=19%  Similarity=0.170  Sum_probs=59.0

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      .|.+|-.++.|+.++=    ....|+..+|...|-.+-|.+...++|.|.-.|.|+++.+|+|+||+|+.+
T Consensus        18 gL~fPV~ri~R~Lk~~----~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~   84 (115)
T cd00074          18 GLQFPVGRIHRYLKKG----RYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR   84 (115)
T ss_pred             CccCcHHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence            5778888888888752    123799999999999999999999999999999999999999999999964

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.80  E-value=0.0014  Score=55.05  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=62.5

Q ss_pred             hhhhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHH
Q 048501           61 KYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLAR  136 (143)
Q Consensus        61 ~yQkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~  136 (143)
                      .++-+++.++-|--...||++|    ..+--+..++-+.|.|.|++|+.++-.-+-.+|.|.|--||.++||+|.+
T Consensus       146 ~~~~~~~~il~k~kl~dLvqqI----d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhL  217 (258)
T KOG1142|consen  146 QDEPGNNPILSKRKLDDLVQQI----DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHL  217 (258)
T ss_pred             cccCCCCccccccchhHHHHhh----cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeee
Confidence            5667777777777777777776    45677889999999999999999999999999999999999999999975

>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.50  E-value=0.027  Score=43.92  Aligned_cols=65  Identities=23%  Similarity=0.409  Sum_probs=54.5

Q ss_pred             hhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501           77 RLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus        77 RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      ++|--|+.+++- --|....+.-|=|.+=.|.+.+++||...+-||++-||...|++||...++.+
T Consensus        17 ~~i~~iL~s~GI-~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~~   81 (148)
T KOG3334|consen   17 RVIASILKSLGI-QEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVDH   81 (148)
T ss_pred             HHHHHHHHHcCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhcc
Confidence            455566665441 23678899999999999999999999999999999999999999999887653

>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)

Probab=94.88  E-value=0.074  Score=36.07  Aligned_cols=54  Identities=20%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             ccc-cchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           88 TDL-WFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        88 ~~~-rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      .+| ..+++||+.|-+.++.||..|...+...|-|+.|-...+.|+.++..=-|.
T Consensus        19 ~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi   73 (77)
T PF07524_consen   19 AGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI   73 (77)
T ss_pred             cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence            344 688999999999999999999999999999999999999999998765553

The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].

>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18)

Probab=88.23  E-value=0.77  Score=32.73  Aligned_cols=63  Identities=14%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             cchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           75 FQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        75 F~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      |..=|+.++--|+..-.=..+.+..|.+..-.|++.+...|..+|...++-+|.+.|+-.+.|
T Consensus         3 f~~eI~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR   65 (93)
T PF02269_consen    3 FSKEIRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR   65 (93)
T ss_dssp             -CCCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence            344455566556655556688899999999999999999999999999999999999988765

Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]

Probab=87.80  E-value=0.77  Score=34.97  Aligned_cols=58  Identities=19%  Similarity=0.229  Sum_probs=49.7

Q ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHH
Q 048501           79 VREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLAR  136 (143)
Q Consensus        79 VrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~  136 (143)
                      |+.++..-...+|+.+.|.-.|--..|.....++|-|.-.|.-.|-..|||+-+|||.
T Consensus        32 vkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAI   89 (132)
T COG5262          32 VKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAI   89 (132)
T ss_pred             HHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHh
Confidence            3444444446789999999999998998889999999999999999999999999994

>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]

Probab=86.19  E-value=1.5  Score=31.93  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           94 SSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        94 ~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      .-..+-...++..||.+..-+|..-+-||||.||+.-|+--++.-.|.
T Consensus        49 G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~   96 (103)
T KOG3467|consen   49 GLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR   96 (103)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc
Confidence            334455667888899999999999999999999999999877665443

>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]

Probab=85.14  E-value=2.2  Score=33.88  Aligned_cols=68  Identities=16%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      +|-+--.|+.+.++   ..+-.+..+|=+.+||.+-.|+-=+-..|+--..--||.||+-.||-.|+--.|
T Consensus        33 LPIANV~RIMK~~l---P~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLG  100 (168)
T KOG0869|consen   33 LPIANVSRIMKKAL---PANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLG  100 (168)
T ss_pred             ccHHHHHHHHHhcC---CcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcC
Confidence            44444444444433   467889999999999999999888888888877889999999999998876544

>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]

Probab=83.05  E-value=1.9  Score=33.88  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=62.6

Q ss_pred             hhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           66 TELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        66 t~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      .++-+||+--+..|.||+-   .|+||..+|=+.|++++=.|+--+--.||..+---.+-||.+.-+.=|+.-.|
T Consensus         9 de~sLPkAtv~KmIke~lP---~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~Lg   80 (156)
T KOG0871|consen    9 DELSLPKATVNKMIKEMLP---KDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLG   80 (156)
T ss_pred             ccccCcHHHHHHHHHHhCC---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcc
Confidence            4667899998888888874   59999999999999999999999999999999999999999988877665444

>smart00414 H2A Histone 2A

Probab=81.94  E-value=2.4  Score=31.21  Aligned_cols=66  Identities=23%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      |.+|---+.|+.++-    ....|+.++|.--|--.-|.....++|-|...+...++..|+|+|++++.+
T Consensus         8 L~fPVgRi~r~Lk~~----~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~   73 (106)
T smart00414        8 LQFPVGRIHRLLRKG----TYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR   73 (106)
T ss_pred             ccCchHHHHHHHHcC----ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence            444444455555432    234589999998998889999999999998888888999999999999854

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=81.71  E-value=2.5  Score=39.41  Aligned_cols=62  Identities=21%  Similarity=0.261  Sum_probs=51.5

Q ss_pred             hHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           78 LVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        78 LVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      -|+-+++..+ --.+..+|..+|-+-+|.-+-.+.+||..++.|+||-+++..|+.-|.|.+.
T Consensus        16 s~k~vAEslG-i~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~n   77 (576)
T KOG2549|consen   16 SVKVVAESLG-ITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLN   77 (576)
T ss_pred             HHHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcc
Confidence            3445555433 2347789999999999999999999999999999999999999999988763

>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=81.44  E-value=2.2  Score=32.91  Aligned_cols=46  Identities=28%  Similarity=0.328  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCc---ccHHHHHHH
Q 048501           93 QSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMP---KDIQLARRI  138 (143)
Q Consensus        93 q~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~---kDiqLa~ri  138 (143)
                      ......-|-+.|--|..+++|||...|-|+.|-.+.+   .|+.||.--
T Consensus        33 e~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at   81 (145)
T COG5094          33 EPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALAT   81 (145)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHH
Confidence            3455566778999999999999999999998876666   999998654

>PLN00154 histone H2A; Provisional

Probab=80.57  E-value=2  Score=33.14  Aligned_cols=68  Identities=18%  Similarity=0.125  Sum_probs=53.9

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      .|.+|---..|+.+|-..   ...|+.++|.--|--+-|.....++|-|.-.|...++..|+|++|+||.+
T Consensus        36 gL~FPVgRi~r~Lk~g~~---~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr  103 (136)
T PLN00154         36 GLQFPVGRIHRQLKQRVS---AHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR  103 (136)
T ss_pred             CccCchHHHHHHHHhhhh---hccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence            455555555666665431   24588888888888888999999999999999999999999999999964

>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=80.08  E-value=2.8  Score=33.66  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTK  123 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~Hak  123 (143)
                      .++..-|++..+..|+.+.... .+..+.+..|-.|+|.+|-.|.++...++-|-.
T Consensus        43 ~fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~   97 (212)
T cd08045          43 SFLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRV   97 (212)
T ss_pred             hccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5678889999999999876544 789999999999999999999999999999963

The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
3av1_A	139	The Human Nucleosome Structure Containing The Histo		5e-44
2io5_B	135	Crystal Structure Of The Cia- Histone H3-H4 Complex		7e-44
2hio_C	136	Histone Octamer (Chicken), Chromosomal Protein Leng		8e-44
3afa_A	139	The Human Nucleosome Structure Length = 139		1e-43
2cv5_A	136	Crystal Structure Of Human Nucleosome Core Particle		1e-43
3lel_A	136	Structural Insight Into The Sequence-Dependence Of		2e-43
3av2_A	139	The Human Nucleosome Structure Containing The Histo		2e-43
1kx3_A	135	X-Ray Structure Of The Nucleosome Core Particle, Nc		3e-43
4hga_B	136	Structure Of The Variant Histone H3.3-H4 Heterodime		3e-43
3azh_A	139	Crystal Structure Of Human Nucleosome Core Particle		3e-43
3azg_A	139	Crystal Structure Of Human Nucleosome Core Particle		3e-43
3azf_A	139	Crystal Structure Of Human Nucleosome Core Particle		3e-43
3aze_A	139	Crystal Structure Of Human Nucleosome Core Particle		3e-43
3ayw_A	139	Crystal Structure Of Human Nucleosome Core Particle		3e-43
3a6n_A	139	The Nucleosome Containing A Testis-Specific Histone		5e-43
3kxb_A	135	Structural Characterization Of H3k56q Nucleosomes A		7e-43
1f66_A	136	2.6 A Crystal Structure Of A Nucleosome Core Partic		2e-42
1aoi_A	116	Complex Between Nucleosome Core Particle (H3,H4,H2a		2e-42
1zla_A	135	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		2e-42
4h9o_A	135	Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length		2e-42
4h9n_A	135	Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 13		3e-42
1m18_A	135	Ligand Binding Alters The Structure And Dynamics Of		5e-42
3c1c_A	135	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		7e-42
1p3b_A	135	Crystallographic Studies Of Nucleosome Core Particl		1e-41
4h9p_A	135	Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length		2e-41
1p3k_A	135	Crystallographic Studies Of Nucleosome Core Particl		3e-41
1p3m_A	135	Crystallographic Studies Of Nucleosome Core Particl		5e-41
1p34_A	135	Crystallographic Studies Of Nucleosome Core Particl		5e-41
1p3a_A	135	Crystallographic Studies Of Nucleosome Core Particl		7e-41
1p3l_A	135	Crystallographic Studies Of Nucleosome Core Particl		9e-41
4h9s_A	135	Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 13		4e-40
1id3_A	135	Crystal Structure Of The Yeast Nucleosome Core Part		1e-37
3kwq_A	98	Structural Characterization Of H3k56q Nucleosomes A		3e-37
1hio_C	93	Histone Octamer (Chicken), Chromosomal Protein, Alp		1e-35
2hue_B	77	Structure Of The H3-h4 Chaperone Asf1 Bound To Hist		2e-25
4eo5_B	76	Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76		2e-25
2yfv_A	100	The Heterotrimeric Complex Of Kluyveromyces Lactis		5e-18
2yfw_A	92	Heterotetramer Structure Of Kluyveromyces Lactis Cs		2e-17
3an2_A	143	The Structure Of The Centromeric Nucleosome Contain		3e-16
3r45_A	156	Structure Of A Cenp-A-Histone H4 Heterodimer In Com		3e-16
3nqu_A	140	Crystal Structure Of Partially Trypsinized (Cenp-AH		4e-16
2l5a_A	235	Structural Basis For Recognition Of Centromere Spec		5e-13
3nqj_A	82	Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Len		3e-11

>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.2 Length = 139

Iteration: 1
 Score =  172 bits (437), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139

>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex Length = 135

Iteration: 1
 Score =  172 bits (435), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein Length = 136

Iteration: 1
 Score =  172 bits (435), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

>pdb|3AFA|A Chain A, The Human Nucleosome Structure Length = 139

Iteration: 1
 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139

>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Length = 136

Iteration: 1
 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of Nucleosom Positioning Length = 136

Iteration: 1
 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 Length = 139

Iteration: 1
 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  +TGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139

>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 135

Iteration: 1
 Score =  170 bits (430), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx Length = 136

Iteration: 1
 Score =  170 bits (430), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 97/138 (70%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 58
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k122q Mutation Length = 139

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMP+DIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPQDIQLARRIRGERA 139

>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k115q Mutation Length = 139

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH +RVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAQRVTIMPKDIQLARRIRGERA 139

>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k79q Mutation Length = 139

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIRKLPFQRLVREIAQDF+TDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRKLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139

>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k64q Mutation Length = 139

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIR+LPFQRLVREIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRQLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139

>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k56q Mutation Length = 139

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQ+STELLIRKLPFQRLVREIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQQSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCA 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139

>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 139

Iteration: 1
 Score =  169 bits (428), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 100/144 (69%), Gaps = 6/144 (4%)
Query: 1   GTHTF-TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREI 59
           G+H   TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREI
Sbjct: 1   GSHMARTKQTARKSTGGKAP--RKQLATKVARK---SAPATGGVKKPHRYRPGTVALREI 55
Query: 60  RKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCT 119
           R+YQKSTELLIRKLPFQRL+REIAQDFKTDL F                 GLFEDTNLC 
Sbjct: 56  RRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCV 115
Query: 120 IHTKRVTIMPKDIQLARRIRGERA 143
           IH KRVTIMPKDIQLARRIRGERA
Sbjct: 116 IHAKRVTIMPKDIQLARRIRGERA 139

>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleosomal Arrays Length = 135

Iteration: 1
 Score =  168 bits (426), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQ+S
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQES 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 136

Iteration: 1
 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATG VKKPH +RPGTVALREIR+YQKS
Sbjct: 4   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGEVKKPHRYRPGTVALREIRRYQKS 58
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 118
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116

Iteration: 1
 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 84/109 (77%)
Query: 35  NSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXX 94
            S  ATGGVKKPH +RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL F  
Sbjct: 8   KSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 67
Query: 95  XXXXXXXXXXXXXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
                           LFEDTNLC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 68  SAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 116

>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 135

Iteration: 1
 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
            IMPKDIQLARRIRGERA
Sbjct: 118 HIMPKDIQLARRIRGERA 135

>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length = 135

Iteration: 1
 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLCTIH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135

>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 135

Iteration: 1
 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLCTIH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135

>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 135

Iteration: 1
 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 83/105 (79%)
Query: 39  ATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXX 98
           ATGGVKKPH +RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL F      
Sbjct: 31  ATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVM 90
Query: 99  XXXXXXXXXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
                       LFEDTNLC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 91  ALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135

>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 135

Iteration: 1
 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 94/138 (68%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDF TDL F                  LFEDTNL  IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 94/138 (68%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATG  KKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length = 135

Iteration: 1
 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 96/138 (69%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLCTIH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135

>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  163 bits (413), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATG  KKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
            IMPKDIQLARRIRGERA
Sbjct: 118 AIMPKDIQLARRIRGERA 135

>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  162 bits (411), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATG  KKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
            IMPKDIQLARRIRGERA
Sbjct: 118 IIMPKDIQLARRIRGERA 135

>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  162 bits (411), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATG  KKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH K V
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKAV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  162 bits (409), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATG  KKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH K V
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKHV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TIMPKDIQLARRIRGERA
Sbjct: 118 TIMPKDIQLARRIRGERA 135

>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  162 bits (409), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  ATG  KKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPATGESKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
            IMPKDIQLARRIRGERA
Sbjct: 118 HIMPKDIQLARRIRGERA 135

>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 135

Iteration: 1
 Score =  159 bits (403), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  +++   R+   S  +TGGVKKPH +RPGTVALREIR+YQKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLATKAARK---SAPSTGGVKKPHRYRPGTVALREIRRYQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREI QDFKTDL +                  LFEDTNLCTIH KRV
Sbjct: 58  TELLIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TI PKDIQLARRIRGERA
Sbjct: 118 TIFPKDIQLARRIRGERA 135

>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 135

Iteration: 1
 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 93/138 (67%), Gaps = 5/138 (3%)
Query: 6   TKWLARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKS 65
           TK  AR    G  P  R  ++S   R+   S  +TGGVKKPH ++PGTVALREIR++QKS
Sbjct: 3   TKQTARKSTGGKAP--RKQLASKAARK---SAPSTGGVKKPHRYKPGTVALREIRRFQKS 57
Query: 66  TELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           TELLIRKLPFQRLVREIAQDFKTDL F                  LFEDTNL  IH KRV
Sbjct: 58  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRV 117
Query: 126 TIMPKDIQLARRIRGERA 143
           TI  K+I+LARR+RGER+
Sbjct: 118 TIQKKEIKLARRLRGERS 135

>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 76/98 (77%)
Query: 46  PHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXX 105
           PH +RPGTVALREIR+YQ+STELLIRKLPFQRLVREIAQDFKTDL F             
Sbjct: 1   PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 60
Query: 106 XXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
                LFEDTNLC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 61  AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 98

>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 93

Iteration: 1
 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 73/93 (78%)
Query: 51  PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXG 110
           PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL F                 G
Sbjct: 1   PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 111 LFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
           LFEDTNLC IH KRVTIMPKDI+LARRIRGERA
Sbjct: 61  LFEDTNLCAIHAKRVTIMPKDIELARRIRGERA 93

>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3 And H4 Length = 77

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 54/75 (72%)
Query: 69  LIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRVTIM 128
           LIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRVTIM
Sbjct: 3   LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 129 PKDIQLARRIRGERA 143
           PKDIQLARRIRGERA
Sbjct: 63  PKDIQLARRIRGERA 77

>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 54/75 (72%)
Query: 69  LIRKLPFQRLVREIAQDFKTDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRVTIM 128
           LIRKLPFQRLVREIAQDFKTDL F                  LFEDTNLC IH KRVTIM
Sbjct: 2   LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 129 PKDIQLARRIRGERA 143
           PKDIQLARRIRGERA
Sbjct: 62  PKDIQLARRIRGERA 76

>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3, Cse4 And H4 Length = 100

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 49  FRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LWFXXXXXXXXXXXXX 105
           ++P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F T+   L +             
Sbjct: 7   YKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASE 66
Query: 106 XXXXGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139
               GL E TNL  +H KR+TIM KD+QLARRIR
Sbjct: 67  AYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100

>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4 Length = 92

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 55  ALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LWFXXXXXXXXXXXXXXXXXGL 111
           AL EIRKYQ+ST+LLI ++PF RLV+E+   F T+   L +                 GL
Sbjct: 1   ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 112 FEDTNLCTIHTKRVTIMPKDIQLARRIRGE 141
            E TNL  +H KR+TIM KD+QLARRIRG+
Sbjct: 61  LEHTNLLALHAKRITIMRKDMQLARRIRGQ 90

>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 143

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 56  LREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFE 113
           L+EIRK QKST LLIRKLPF RL REI   F    D  +                  LFE
Sbjct: 51  LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 110
Query: 114 DTNLCTIHTKRVTIMPKDIQLARRIRG 140
           D  L T+H  RVT+ PKD+QLARRIRG
Sbjct: 111 DAYLLTLHAGRVTLFPKDVQLARRIRG 137

>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex With Chaperone Hjurp Length = 156

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 56  LREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFE 113
           L+EIRK QKST LLIRKLPF RL REI   F    D  +                  LFE
Sbjct: 64  LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 123
Query: 114 DTNLCTIHTKRVTIMPKDIQLARRIRG 140
           D  L T+H  RVT+ PKD+QLARRIRG
Sbjct: 124 DAYLLTLHAGRVTLFPKDVQLARRIRG 150

>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2 HETEROTETRAMER Length = 140

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 56  LREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFE 113
           L+EIRK QKST LLIRKLPF RL REI   F    D  +                  LFE
Sbjct: 48  LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 107
Query: 114 DTNLCTIHTKRVTIMPKDIQLARRIRG 140
           D  L T+H  RVT+ PKD+QLARRIRG
Sbjct: 108 DAYLLTLHAGRVTLFPKDVQLARRIRG 134

>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific Histone H3 Variant By Nonhistone Scm3 Length = 235

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 68  LLIRKLPFQRLVREIAQDFKT---DLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKR 124
           LLI K+PF RLV+E+  +F T   DL +                 GL E TNL  +H KR
Sbjct: 10  LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
Query: 125 VTIMPKDIQLARRIRGE 141
           +TIM KD+QLARRIRG+
Sbjct: 70  ITIMKKDMQLARRIRGQ 86

>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Length = 82

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 68  LLIRKLPFQRLVREIAQDFK--TDLWFXXXXXXXXXXXXXXXXXGLFEDTNLCTIHTKRV 125
           LLIRKLPF RL REI   F    D  +                  LFED  L T+H  RV
Sbjct: 2   LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 126 TIMPKDIQLARRIRG 140
           T+ PKD+QLARRIRG
Sbjct: 62  TLFPKDVQLARRIRG 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	2e-42
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	5e-39
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	4e-38
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	3e-34
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	8e-34
3r45_A	156	Histone H3-like centromeric protein A; histone fol	3e-31
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	2e-29
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	4e-04
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	5e-04

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Length = 77

 Score =  134 bits (338), Expect = 2e-42
 Identities = 69/76 (90%), Positives = 70/76 (92%)

Query: 68  LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTI 127
            LIRKLPFQRLVREIAQDFKTDL FQSSAV ALQEA+EAYLV LFEDTNLC IH KRVTI
Sbjct: 2   ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 61

Query: 128 MPKDIQLARRIRGERA 143
           MPKDIQLARRIRGERA
Sbjct: 62  MPKDIQLARRIRGERA 77

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Length = 100

 Score =  126 bits (317), Expect = 5e-39
 Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 3/99 (3%)

Query: 44  KKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LWFQSSAVAAL 100
            +   ++P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F T+   L +QS A+ AL
Sbjct: 2   ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMAL 61

Query: 101 QEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR 139
           QEA+EAYLVGL E TNL  +H KR+TIM KD+QLARRIR
Sbjct: 62  QEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Length = 136

 Score =  125 bits (314), Expect = 4e-38
 Identities = 102/135 (75%), Positives = 109/135 (80%), Gaps = 1/135 (0%)

Query: 10  ARSRQQGSPPEG-RHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTEL 68
           AR++Q      G +        +    S  ATGGVKKPH +RPGTVALREIR+YQKSTEL
Sbjct: 2   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 61

Query: 69  LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIM 128
           LIRKLPFQRLVREIAQDFKTDL FQSSAV ALQEA+EAYLVGLFEDTNLC IH KRVTIM
Sbjct: 62  LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121

Query: 129 PKDIQLARRIRGERA 143
           PKDIQLARRIRGERA
Sbjct: 122 PKDIQLARRIRGERA 136

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Length = 140

 Score =  115 bits (288), Expect = 3e-34
 Identities = 64/137 (46%), Positives = 76/137 (55%), Gaps = 2/137 (1%)

Query: 9   LARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTEL 68
           +   R+   P   R    S  P    +    + G       R     L+EIRK QKST L
Sbjct: 1   MGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHL 60

Query: 69  LIRKLPFQRLVREIAQDF--KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVT 126
           LIRKLPF RL REI   F    D  +Q+ A+ ALQEAAEA+LV LFED  L T+H  RVT
Sbjct: 61  LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 120

Query: 127 IMPKDIQLARRIRGERA 143
           + PKD+QLARRIRG   
Sbjct: 121 LFPKDVQLARRIRGLEE 137

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Length = 82

 Score =  112 bits (281), Expect = 8e-34
 Identities = 48/77 (62%), Positives = 55/77 (71%), Gaps = 2/77 (2%)

Query: 68  LLIRKLPFQRLVREIAQDFKT--DLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRV 125
           LLIRKLPF RL REI   F    D  +Q+ A+ ALQEAAEA+LV LFED  L T+H  RV
Sbjct: 2   LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61

Query: 126 TIMPKDIQLARRIRGER 142
           T+ PKD+QLARRIRG  
Sbjct: 62  TLFPKDVQLARRIRGLE 78

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Length = 156

 Score =  108 bits (270), Expect = 3e-31
 Identities = 64/136 (47%), Positives = 75/136 (55%), Gaps = 2/136 (1%)

Query: 10  ARSRQQGSPPEGRHHVSSWPPRQLGNSTSATGGVKKPHCFRPGTVALREIRKYQKSTELL 69
              R+   P   R    S  P    +    + G       R     L+EIRK QKST LL
Sbjct: 18  GPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRKLQKSTHLL 77

Query: 70  IRKLPFQRLVREIAQDF--KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTI 127
           IRKLPF RL REI   F    D  +Q+ A+ ALQEAAEA+LV LFED  L T+H  RVT+
Sbjct: 78  IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTL 137

Query: 128 MPKDIQLARRIRGERA 143
            PKD+QLARRIRG   
Sbjct: 138 FPKDVQLARRIRGLEE 153

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235

 Score =  105 bits (263), Expect = 2e-29
 Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 3/88 (3%)

Query: 59  IRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLWFQSSAVAALQEAAEAYLVGLFEDT 115
           +  +    +LLI K+PF RLV+E+  +F T   DL +QS A+ ALQEA+EAYLVGL E T
Sbjct: 1   MHHHHHHKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHT 60

Query: 116 NLCTIHTKRVTIMPKDIQLARRIRGERA 143
           NL  +H KR+TIM KD+QLARRIRG+  
Sbjct: 61  NLLALHAKRITIMKKDMQLARRIRGQFL 88

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Length = 70

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 94  SSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR 137
             A   L E  E Y + + +       H  R T+  +DI+LA +
Sbjct: 26  EQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Length = 68

 Score = 35.4 bits (82), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 94  SSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLA-RRIR 139
             A  AL +  E     +  +      H  R TI  +DI+LA +  +
Sbjct: 22  DDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMFK 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	100.0
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	100.0
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	100.0
3r45_A	156	Histone H3-like centromeric protein A; histone fol	100.0
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	100.0
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	100.0
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	100.0
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	99.95
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	99.81
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	99.65
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	99.51
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	99.09
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	99.09
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	98.73
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	98.72
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	98.68
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	98.6
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	98.58
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	98.57
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	98.55
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	98.54
1taf_A	68	TFIID TBP associated factor 42; transcription init	98.51
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	98.42
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	98.41
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	98.34
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	98.32
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	98.28
2r10_A	361	Chromatin structure-remodeling complex protein RSC	98.27
1taf_B	70	TFIID TBP associated factor 62; transcription init	98.25
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	98.11
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	98.07
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	98.05
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	98.0
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	97.52
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	97.47
2x4w_B	26	Histone H3.2; transcription, metal-binding, zinc-f	97.27
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	97.17
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	97.08
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	97.03
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	97.01
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	96.96
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	96.83
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	96.82
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	96.79
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	96.64
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	90.45

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=100.00  E-value=4.4e-62  Score=370.36  Aligned_cols=131  Identities=80%  Similarity=1.156  Sum_probs=93.7

Q ss_pred             hhccccCCCCCCCCCCCCCCCCCcCC-----CCCCCCCCCCCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHH
Q 048501            9 LARSRQQGSPPEGRHHVSSWPPRQLG-----NSTSATGGVKKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA   83 (143)
Q Consensus         9 MartK~ta~k~~~~~~~~kaprk~~~-----ks~p~~~~~k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~   83 (143)
                      ||||||||++++|    ||+|+|+++     |++|+++++++|+||+||+++|+|||+||+||+|||||+||+||||||+
T Consensus         1 MARtk~tarkstg----gkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~   76 (136)
T 1tzy_C            1 MARTKQTARKSTG----GKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIA   76 (136)
T ss_dssp             ---------------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHH
T ss_pred             CCCCccccccCCC----CCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHH
Confidence            9999999999999    999999987     6678888999999999999999999999999999999999999999999


Q ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccCC
Q 048501           84 QDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA  143 (143)
Q Consensus        84 ~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~~  143 (143)
                      ++|.+|+|||++||+|||||+|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus        77 ~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~  136 (136)
T 1tzy_C           77 QDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA  136 (136)
T ss_dssp             HHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred             HHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence            999999999999999999999999999999999999999999999999999999999864

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=100.00  E-value=1.1e-51  Score=299.19  Aligned_cols=96  Identities=59%  Similarity=0.924  Sum_probs=67.2

Q ss_pred             CCcccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 048501           44 KKPHCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLWFQSSAVAALQEAAEAYLVGLFEDTNLCTI  120 (143)
Q Consensus        44 k~~~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~~---~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~  120 (143)
                      ++||||+||++||+|||+||+||+|||||+||+||||||++++++   ++|||++|+.|||||+|+|||+||||+|+||+
T Consensus         2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~   81 (100)
T 2yfv_A            2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL   81 (100)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999987   99999999999999999999999999999999


Q ss_pred             ccCccccCcccHHHHHHHh
Q 048501          121 HTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus       121 HakRvTi~~kDiqLa~rir  139 (143)
                      ||||||||++|||||++||
T Consensus        82 HAkRvTi~~kDiqLa~rir  100 (100)
T 2yfv_A           82 HAKRITIMRKDMQLARRIR  100 (100)
T ss_dssp             HTTCSEECHHHHHHHHHCC
T ss_pred             HcCCccCCHHHHHHHHHhC
Confidence            9999999999999999986

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=100.00  E-value=8.4e-50  Score=304.02  Aligned_cols=106  Identities=58%  Similarity=0.813  Sum_probs=73.0

Q ss_pred             CCCCCCCCCCCcc-cCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHH
Q 048501           35 NSTSATGGVKKPH-CFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGL  111 (143)
Q Consensus        35 ks~p~~~~~k~~~-r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~l  111 (143)
                      +++|++|++++++ ||+||+  |+|||+||+||+|||||+||+||||||+++|+  .++|||++||+|||||+|+|||+|
T Consensus        28 ~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~L  105 (140)
T 3nqu_A           28 RRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL  105 (140)
T ss_dssp             ---------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHH
Confidence            6778888777655 899998  99999999999999999999999999999998  689999999999999999999999


Q ss_pred             hhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501          112 FEDTNLCTIHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus       112 feda~l~a~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      |||+|+||+||||||||++|||||++|||+.
T Consensus       106 FEdanlcAiHAkRVTIm~kDiqLArrirg~~  136 (140)
T 3nqu_A          106 FEDAYLLTLHAGRVTLFPKDVQLARRIRGLE  136 (140)
T ss_dssp             HHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence            9999999999999999999999999999974

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.2e-50  Score=308.23  Aligned_cols=106  Identities=57%  Similarity=0.794  Sum_probs=74.1

Q ss_pred             CCCCCCCCCCCc-ccCCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHH
Q 048501           35 NSTSATGGVKKP-HCFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGL  111 (143)
Q Consensus        35 ks~p~~~~~k~~-~r~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~l  111 (143)
                      +++|++|+++++ +||+||+  |+|||+||+||+|||||+||+||||||+++|+  .++|||++||+|||||+|+|||+|
T Consensus        44 ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~L  121 (156)
T 3r45_A           44 RRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL  121 (156)
T ss_dssp             ---------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHH
Confidence            678888888766 7899998  99999999999999999999999999999998  689999999999999999999999


Q ss_pred             hhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501          112 FEDTNLCTIHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus       112 feda~l~a~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      |||+|+||+||||||||++|||||++|||+.
T Consensus       122 FEdanLcAiHAkRVTIm~kDIqLArrIrg~~  152 (156)
T 3r45_A          122 FEDAYLLTLHAGRVTLFPKDVQLARRIRGLE  152 (156)
T ss_dssp             HHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence            9999999999999999999999999999973

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=100.00  E-value=1.5e-39  Score=225.92  Aligned_cols=77  Identities=90%  Similarity=1.226  Sum_probs=74.0

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccCC
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA  143 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~~  143 (143)
                      +|||||+||+||||||++++++++|||++|+.||||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus         1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~   77 (77)
T 2hue_B            1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA   77 (77)
T ss_dssp             -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred             CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999863

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.8e-39  Score=226.88  Aligned_cols=75  Identities=64%  Similarity=0.939  Sum_probs=71.7

Q ss_pred             hhhccCccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501           68 LLIRKLPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      |||||+||+||||||+++++  .++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||+||||++
T Consensus         2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~   78 (82)
T 3nqj_A            2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE   78 (82)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred             CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence            78999999999999999998  6899999999999999999999999999999999999999999999999999985

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=246.94  Aligned_cols=77  Identities=64%  Similarity=0.971  Sum_probs=72.4

Q ss_pred             hhhhhccCccchhHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhccC
Q 048501           66 TELLIRKLPFQRLVREIAQDFKT---DLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGER  142 (143)
Q Consensus        66 t~llI~k~pF~RLVrEI~~~~~~---~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~~  142 (143)
                      ..+||||+|||||||||++++.+   ++|||++||.|||||+|+|||+||||+|+||+|||||||||+|||||+||||+.
T Consensus         8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~   87 (235)
T 2l5a_A            8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF   87 (235)
T ss_dssp             ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred             ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence            35899999999999999999986   899999999999999999999999999999999999999999999999999975

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.6e-28  Score=183.07  Aligned_cols=73  Identities=53%  Similarity=0.822  Sum_probs=69.6

Q ss_pred             hhccCccchhHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhhhhhc------------------------
Q 048501           69 LIRKLPFQRLVREIAQDFKT---DLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIH------------------------  121 (143)
Q Consensus        69 lI~k~pF~RLVrEI~~~~~~---~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~H------------------------  121 (143)
                      ||||+||+||||||++++++   ++|||++||.|||||+|+|||+||||+|+||+|                        
T Consensus         1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~   80 (121)
T 2ly8_A            1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF   80 (121)
T ss_dssp             CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence            79999999999999999987   899999999999999999999999999999998                        


Q ss_pred             --------------cCccccCcccHHHHHHHhcc
Q 048501          122 --------------TKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus       122 --------------akRvTi~~kDiqLa~rirg~  141 (143)
                                    ++|.||+..||.++.+-.|.
T Consensus        81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~  114 (121)
T 2ly8_A           81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR  114 (121)
T ss_dssp             HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence                          68899999999999988875

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=99.81  E-value=7e-21  Score=127.20  Aligned_cols=64  Identities=23%  Similarity=0.292  Sum_probs=61.3

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI  138 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri  138 (143)
                      ||++||+|+++++     ++.+|+++|+.+||+++|.|++.||+|||.||.|+||+||+++||++|++.
T Consensus         3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~   66 (68)
T 1b67_A            3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM   66 (68)
T ss_dssp             SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred             CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            7999999999999     579999999999999999999999999999999999999999999999763

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=99.65  E-value=4e-17  Score=109.77  Aligned_cols=64  Identities=25%  Similarity=0.309  Sum_probs=60.6

Q ss_pred             hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           69 LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        69 lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      .||+.||.||+|+.     ...||+++|+.+|||++|.|++.+++||+.+|.|+||.||+++||+|+.+
T Consensus         6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A            6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            48999999999986     46899999999999999999999999999999999999999999999964

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=99.51  E-value=6.7e-15  Score=103.73  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             hhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           64 KSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        64 kst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      +++++.+|+.++.|+++++..   .+.+|+.+|..+||+++|.|+..|+++|+.||.|++|.||+++||..|.+-.
T Consensus         3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l   75 (93)
T 1n1j_A            3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTL   75 (93)
T ss_dssp             ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred             CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence            457889999999999999854   3689999999999999999999999999999999999999999999998743

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=99.09  E-value=1.3e-10  Score=86.85  Aligned_cols=69  Identities=20%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      ++..|..+|+.|+.++++|+++++.||..|....++++.++-.+|..++.|++|.||+++|||.|.||.
T Consensus        34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl  102 (126)
T 1tzy_B           34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL  102 (126)
T ss_dssp             CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence            678899999999999999999999999999999999999999999999999999999999999999985

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=99.09  E-value=1.4e-10  Score=86.46  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=66.8

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      ++..|..+|+.|+.++++|.++++.|+..|....++++.++-.+|..++.|++|.||+++|||.|.||.
T Consensus        31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl   99 (123)
T 2nqb_D           31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL   99 (123)
T ss_dssp             CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            567899999999999999999999999999999999999999999999999999999999999999985

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=98.73  E-value=4.8e-09  Score=75.22  Aligned_cols=72  Identities=21%  Similarity=0.212  Sum_probs=62.0

Q ss_pred             hhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           65 STELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        65 st~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      +..--||+.+..||.+..    .. -|++.+|.+.|++..|.|+..+.+||..+|-|++|.||++.||++|++-.|+
T Consensus        25 ~~~~gip~~~I~Rlar~~----G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~   96 (103)
T 1tzy_D           25 DNIQGITKPAIRRLARRG----GV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR   96 (103)
T ss_dssp             CGGGGSCHHHHHHHHHHT----TC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred             hhcccCCHHHHHHHHHHc----Cc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence            333348888877777654    22 6999999999999999999999999999999999999999999999987775

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=98.72  E-value=4.6e-09  Score=75.37  Aligned_cols=69  Identities=22%  Similarity=0.252  Sum_probs=59.7

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      --||+.+..||.+..    .. -|++.+|.+.|+++.|.|+..+.+||..+|-|++|.||++.||++|.+-.|+
T Consensus        28 ~gip~~~I~Rlar~~----G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~   96 (103)
T 2yfw_B           28 QGITKPAIRRLARRG----GV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR   96 (103)
T ss_dssp             --CCHHHHHHHHHHT----TC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred             ccCCHHHHHHHHHHc----Cc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence            348888877777654    23 6999999999999999999999999999999999999999999999987775

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=98.68  E-value=1.2e-08  Score=73.39  Aligned_cols=69  Identities=22%  Similarity=0.241  Sum_probs=61.9

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      --||+.|..||.+..     ...|++.+|.++|+++.|.|+..+.+||..+|-|++|-||+..||.+|++-.|+
T Consensus        27 ~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~   95 (102)
T 1id3_B           27 QGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR   95 (102)
T ss_dssp             GGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence            348888888887764     347999999999999999999999999999999999999999999999987775

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=98.60  E-value=4.6e-08  Score=66.45  Aligned_cols=66  Identities=12%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501           69 LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI  138 (143)
Q Consensus        69 lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri  138 (143)
                      .+|+.+..|+++++.    ++.+++.+|..+|++++|.|+..|-.+|+..+.|.+|-||+++||+.|.+.
T Consensus         4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~   69 (76)
T 3b0c_W            4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV   69 (76)
T ss_dssp             CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred             cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            357777777776654    578999999999999999999999999999999999999999999998765

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=98.58  E-value=1.6e-08  Score=70.02  Aligned_cols=69  Identities=22%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             hhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           68 LLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        68 llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      --||+.+..||.+..     ...|++.+|.++|++..|.|+..+.+||..+|-|++|.||+..|+.+|.+-.|+
T Consensus         9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~   77 (84)
T 2hue_C            9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR   77 (84)
T ss_dssp             CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred             CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence            347888877777654     247999999999999999999999999999999999999999999999887664

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=98.57  E-value=1e-07  Score=74.96  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      ++..|..+++.|+.++++|.+++.+||..|....++++..+-.+|..++.|++|.||+++|||.+.+|-
T Consensus         1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~   69 (192)
T 2jss_A            1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI   69 (192)
T ss_dssp             CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence            467899999999999999999999999999999999999999999999999999999999999999873

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=98.55  E-value=4e-08  Score=75.45  Aligned_cols=70  Identities=16%  Similarity=0.046  Sum_probs=64.4

Q ss_pred             hhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501           64 KSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI  138 (143)
Q Consensus        64 kst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri  138 (143)
                      ..-++.||+.|..|+.|+-     ...|++++|-.+|+++.|.|+..+.++|+..|.|++|.||++.||+++..-
T Consensus        77 d~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~  146 (154)
T 1f1e_A           77 DYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY  146 (154)
T ss_dssp             TCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             ccccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            3456789999999999987     567999999999999999999999999999999999999999999999765

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=98.54  E-value=7.8e-08  Score=69.99  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=57.2

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      ++-||+..-.||.++-     ...+++.+|+++|+++++.|+..+..||+..|-||+|.||+..|+.++.+-.|.
T Consensus         5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~   74 (111)
T 3b0c_T            5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL   74 (111)
T ss_dssp             -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence            3456776655555544     468999999999999999999999999999999999999999999999886654

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=98.51  E-value=2.2e-07  Score=62.55  Aligned_cols=62  Identities=19%  Similarity=0.389  Sum_probs=56.1

Q ss_pred             hhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           77 RLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        77 RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      ++|..|+.+.+- -+++..++..|-|.+|.|...+..||..+|-||+|.||...||+||...+
T Consensus         5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~   66 (68)
T 1taf_A            5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT   66 (68)
T ss_dssp             HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence            567777777654 39999999999999999999999999999999999999999999998765

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=98.42  E-value=1.6e-07  Score=66.45  Aligned_cols=65  Identities=22%  Similarity=0.138  Sum_probs=55.3

Q ss_pred             CccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           73 LPFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        73 ~pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      ..++--|-.|+++..  .+..++++++.+|-|.++.|+..+-.|+...|-||+|.||.+.|+.|+.|
T Consensus        12 aal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R   78 (90)
T 3v9r_A           12 ARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR   78 (90)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            344455666666652  24789999999999999999999999999999999999999999999865

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=98.41  E-value=2.7e-07  Score=67.80  Aligned_cols=60  Identities=23%  Similarity=0.351  Sum_probs=51.4

Q ss_pred             hHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           78 LVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        78 LVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      -|-.|+++..  .+..++.+++.+|-|+++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus        32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R   93 (113)
T 4dra_A           32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR   93 (113)
T ss_dssp             HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence            3444444432  35779999999999999999999999999999999999999999999865

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=98.34  E-value=2.6e-07  Score=67.19  Aligned_cols=64  Identities=25%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             ccchhHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           74 PFQRLVREIAQDFK--TDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        74 pF~RLVrEI~~~~~--~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      .++--|-.|+++..  .+.+++.+++.+|-|.++.|+..+..|+...|-||+|.||...|+.|+.|
T Consensus        20 al~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R   85 (107)
T 3b0b_B           20 AVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR   85 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence            33444555555543  35799999999999999999999999999999999999999999999865

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=98.32  E-value=5.9e-07  Score=68.14  Aligned_cols=64  Identities=27%  Similarity=0.353  Sum_probs=55.3

Q ss_pred             ccchhHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           74 PFQRLVREIAQDF--KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        74 pF~RLVrEI~~~~--~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      ..+--|-.|+++.  ..+..++.+++.+|-|+++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus        20 Al~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R   85 (140)
T 3vh5_A           20 AVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR   85 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            3444566666665  246889999999999999999999999999999999999999999999975

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=98.28  E-value=4.3e-07  Score=69.72  Aligned_cols=67  Identities=9%  Similarity=0.080  Sum_probs=60.2

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      +|+.|..|++|+-+    +..|++.+|-++|+++.|.|+..+-.+|+..|.|++|.||++.|+..+..=+|
T Consensus         5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg   71 (154)
T 1f1e_A            5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM   71 (154)
T ss_dssp             CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHT
T ss_pred             CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcc
Confidence            67788888887765    45999999999999999999999999999999999999999999999886554

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*

Probab=98.27  E-value=1e-07  Score=80.85  Aligned_cols=45  Identities=13%  Similarity=0.181  Sum_probs=12.5

Q ss_pred             ccccCCCCCCCCCCCCCCCCCcCC-----CCCCCCCCCCCcccCCCCchhhHHH
Q 048501           11 RSRQQGSPPEGRHHVSSWPPRQLG-----NSTSATGGVKKPHCFRPGTVALREI   59 (143)
Q Consensus        11 rtK~ta~k~~~~~~~~kaprk~~~-----ks~p~~~~~k~~~r~rpgt~alrEI   59 (143)
                      ||||||+|++|    |++|+|+++     ++.|.++++++||||+||++|+.|-
T Consensus         3 ~tk~tarkstg----gkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~   52 (361)
T 2r10_A            3 DPFTTARKSTG----GKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE   52 (361)
T ss_dssp             ----------------------------------------CCSSCCSCCBCCCS
T ss_pred             cccccccCCCC----CCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence            89999999999    999999988     4456677889999999999997765

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=98.25  E-value=1.5e-06  Score=58.79  Aligned_cols=59  Identities=20%  Similarity=0.285  Sum_probs=50.7

Q ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501           79 VREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI  138 (143)
Q Consensus        79 VrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri  138 (143)
                      |+.|+++.+- -+.+.+|..+|-+-+|.++-.+.++|..++.|+||-||+..||.+|.++
T Consensus        12 v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~   70 (70)
T 1taf_B           12 MKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence            4445554443 3789999999999999999999999999999999999999999999763

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=98.11  E-value=2.9e-06  Score=63.01  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      ++.+|..+-.|++++...   ...+++.+|..+|++++|.|+..|-..|+..+.|.+|-||...||..|..-.|
T Consensus         7 d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~   77 (128)
T 2byk_B            7 DLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD   77 (128)
T ss_dssp             ----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred             cccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence            566788887777776643   46899999999999999999999999999999999999999999999876543

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=98.07  E-value=2.6e-06  Score=66.86  Aligned_cols=74  Identities=14%  Similarity=0.241  Sum_probs=64.8

Q ss_pred             hhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           63 QKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        63 Qkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      ....++.+|+.+..|++++++.    +.+++.+|..+|+++++.|+.-|-..||..+.|.+|.||+..||-.|..=.|
T Consensus         9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg   82 (179)
T 1jfi_B            9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG   82 (179)
T ss_dssp             ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred             CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence            4456788999999999998863    7899999999999999999999999999999999999999999999876433

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=98.05  E-value=5e-06  Score=60.87  Aligned_cols=70  Identities=17%  Similarity=0.253  Sum_probs=62.1

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      ++-.+.+|..| |+.|++.-....+++.+|..+|..++|-|+..|.+.|+.+|...+|.||+++||..|..
T Consensus        36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~  105 (119)
T 4g92_C           36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS  105 (119)
T ss_dssp             CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence            34456789988 78888865566799999999999999999999999999999999999999999999864

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=98.00  E-value=6.7e-06  Score=58.06  Aligned_cols=81  Identities=22%  Similarity=0.315  Sum_probs=56.3

Q ss_pred             hhHHHHhhhhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHH
Q 048501           55 ALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQL  134 (143)
Q Consensus        55 alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqL  134 (143)
                      .+.||+..- ..+.--..+|-.|. +.|++.-...-+++.+|..+|..++|.|+..|.+.|+.+|.+.||.||+++||++
T Consensus         3 ~~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~   80 (97)
T 1n1j_B            3 HMEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM   80 (97)
T ss_dssp             ------------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred             HHHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHH
Confidence            355666642 22233456777774 6677765444689999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 048501          135 ARR  137 (143)
Q Consensus       135 a~r  137 (143)
                      |.+
T Consensus        81 Av~   83 (97)
T 1n1j_B           81 AIT   83 (97)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            864

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=97.52  E-value=6e-05  Score=53.33  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      ..+|..|. +.|++.-..--+++.+|.-.|-.+.|.|+..|.+.|+.+|.+.+|-||+++||+++.+
T Consensus        10 ~~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~   75 (98)
T 1jfi_A           10 ARFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE   75 (98)
T ss_dssp             CCCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             CCCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence            35666664 6677754444699999999999999999999999999999999999999999998753

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=97.47  E-value=0.00023  Score=48.77  Aligned_cols=65  Identities=23%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           69 LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        69 lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      ++.|--.+.||++|    .+...+..++-++|.+.|++|+.+..+.|-.+|.|.+--||.++|+||...
T Consensus         5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   69 (76)
T 1h3o_B            5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   69 (76)
T ss_dssp             SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            44666667777777    467899999999999999999999999999999999999999999999853

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=97.17  E-value=0.00036  Score=52.53  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=50.1

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhh-hccCccccCcccHHHHHH
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCT-IHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a-~HakRvTi~~kDiqLa~r  137 (143)
                      ..+|-.| |+.|++.-...-.++.+|..++..|+|-|+..|.+.|+.+| .-.+|-||+++||..|..
T Consensus        18 ~~LPlaR-IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~   84 (140)
T 2byk_A           18 TFLPLSR-VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN   84 (140)
T ss_dssp             ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence            4566666 46777755444689999999999999999999999999999 999999999999999875

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.00045  Score=56.19  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=49.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           90 LWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        90 ~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      -|++.+|.+.+.++.|.||..+..||...|-||+|.||++.|+.+|.+-.|.
T Consensus       177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr  228 (235)
T 2l5a_A          177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR  228 (235)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999999999999999999987764

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=97.03  E-value=0.001  Score=49.05  Aligned_cols=67  Identities=22%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.++.|+.++-    ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus        21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   87 (123)
T 2nqb_C           21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR   87 (123)
T ss_dssp             TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence            4666666666666543    223599999999999999999999999999999999999999999999976

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=97.01  E-value=0.0011  Score=48.72  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=58.0

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|-+|-.++.|+.++-    ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus        20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~   86 (120)
T 2f8n_G           20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   86 (120)
T ss_dssp             TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            5667777777777653    223599999999999999999999999999999999999999999999976

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=96.96  E-value=0.0012  Score=49.00  Aligned_cols=67  Identities=22%  Similarity=0.213  Sum_probs=57.2

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.++.|+.++-    ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus        23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   89 (129)
T 1tzy_A           23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (129)
T ss_dssp             TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            4666777777766543    223599999999999999999999999999999999999999999999976

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=96.83  E-value=0.0012  Score=49.10  Aligned_cols=67  Identities=24%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.++.|+.++-    ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus        23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~   89 (131)
T 1id3_C           23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (131)
T ss_dssp             TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            4556666666666542    223499999999999999999999999999999999999999999999976

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=96.82  E-value=0.0015  Score=49.84  Aligned_cols=67  Identities=22%  Similarity=0.217  Sum_probs=56.9

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.++.|+.++-    ..-.|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus        42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~  108 (149)
T 2f8n_K           42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR  108 (149)
T ss_dssp             TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence            5666776766666543    223489999999999999999999999999999999999999999999976

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=96.79  E-value=0.0017  Score=48.16  Aligned_cols=68  Identities=18%  Similarity=0.119  Sum_probs=56.8

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.++.|+.++-.   ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus        25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~   92 (128)
T 1f66_C           25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   92 (128)
T ss_dssp             TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred             CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            46667666666665431   123589999999999999999999999999999999999999999999975

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=96.64  E-value=0.00098  Score=52.15  Aligned_cols=68  Identities=22%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.++.|+.++-.   ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus       103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~  170 (192)
T 2jss_A          103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR  170 (192)
T ss_dssp             SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            56666666666665421   123689999999999999999999999999999999999999999999976

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=90.45  E-value=0.043  Score=42.13  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=11.8

Q ss_pred             hccccCCCCCCCCCCCCCCCCCcC
Q 048501           10 ARSRQQGSPPEGRHHVSSWPPRQL   33 (143)
Q Consensus        10 artK~ta~k~~~~~~~~kaprk~~   33 (143)
                      |||||+|+|++|    +|++.+++
T Consensus         1 ~~~~~~~r~s~~----~K~~~~~~   20 (159)
T 3a1b_A            1 ARTKQTARKSTG----GKAPRKQL   20 (159)
T ss_dssp             CEEEECCCC-----------CHHH
T ss_pred             CccccccccccC----CCcchHHH
Confidence            799999999999    99998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1tzyc_	95	a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),	4e-58
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	4e-10
d1ku5a_	66	a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc	1e-05
d1htaa_	68	a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth	5e-05
d1n1ja_	87	a.22.1.3 (A:) Nuclear transcription factor Y subun	8e-05
d1n1jb_	78	a.22.1.3 (B:) Nuclear transcription factor Y subun	2e-04
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	4e-04
d1jfib_	135	a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain	0.003

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  173 bits (440), Expect = 4e-58
 Identities = 88/95 (92%), Positives = 91/95 (95%)

Query: 49  FRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYL 108
           +RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDL FQSSAV ALQEA+EAYL
Sbjct: 1   YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60

Query: 109 VGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGERA 143
           VGLFEDTNLC IH KRVTIMPKDIQLARRIRGERA
Sbjct: 61  VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 52.5 bits (126), Expect = 4e-10
 Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 5/85 (5%)

Query: 51  PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVG 110
                +  +   +     L  +   +R+++             S AV    +        
Sbjct: 61  KALADVLMVEGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEE 115

Query: 111 LFEDTNLCTIHTKRVTIMPKDIQLA 135
           L E          R T+  +D++ A
Sbjct: 116 LGEKAAEYADEDGRKTVQGEDVEKA 140

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

 Score = 38.6 bits (90), Expect = 1e-05
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 73  LPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDI 132
           LP   + R I +           A   L E  E Y + + +       H  R T+  +DI
Sbjct: 3   LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60

Query: 133 QLA 135
           +LA
Sbjct: 61  KLA 63

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

 Score = 37.0 bits (86), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 93  QSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLA 135
              A  AL +  E     +  +      H  R TI  +DI+LA
Sbjct: 22  SDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 64

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 8e-05
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 73  LPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDI 132
           LP   + R +             A   +QE    ++  +  + +      KR TI  +DI
Sbjct: 3   LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62

Query: 133 QLA 135
             A
Sbjct: 63  LFA 65

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 73  LPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDI 132
           LP  R +++I +  +      + A     +AA+ ++  L     + T   KR T+   DI
Sbjct: 1   LPLAR-IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 59

Query: 133 QLA 135
            +A
Sbjct: 60  AMA 62

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 55  ALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFED 114
           A   I K ++   L +       L++E+                 +    E     + + 
Sbjct: 85  AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYK-----IDHQVSVYIVAVLEYISADILKL 139

Query: 115 TNLCTIHTKRVTIMPKDIQLARR 137
                 + +   I  +DI++A  
Sbjct: 140 AGNYVRNIRHYEITKQDIKVAMC 162

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 7/63 (11%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 73  LPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDI 132
           +P    + ++ ++   ++   + A   +      ++  +  + N     +++ TI P+ +
Sbjct: 5   IPRAA-INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 63

Query: 133 QLA 135
             A
Sbjct: 64  IQA 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	100.0
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.16
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	98.98
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	98.93
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	98.8
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	98.38
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	98.22
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	98.16
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	98.0
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	97.97
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	97.96
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	97.77
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	97.68
d1tafa_	68	TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta	97.49
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	97.33
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	97.22
d2byka1	72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	94.01
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	93.61
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	93.33
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	91.63
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	88.38

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=1.4e-50  Score=289.48  Aligned_cols=95  Identities=93%  Similarity=1.313  Sum_probs=93.7

Q ss_pred             CCCCchhhHHHHhhhhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccC
Q 048501           49 FRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIM  128 (143)
Q Consensus        49 ~rpgt~alrEIr~yQkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~  128 (143)
                      ||||++||+|||+||+||++||||+||+||||||++++++++|||++||+|||||+|+|||+||||||+||+|+||||||
T Consensus         1 ~rpGt~ALrEIRk~Qkst~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~   80 (95)
T d1tzyc_           1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCCchHHHHHHHHHhCCcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHhccCC
Q 048501          129 PKDIQLARRIRGERA  143 (143)
Q Consensus       129 ~kDiqLa~rirg~~~  143 (143)
                      ++||+||++|||+++
T Consensus        81 ~kD~~LarrirG~r~   95 (95)
T d1tzyc_          81 PKDIQLARRIRGERA   95 (95)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhccCC
Confidence            999999999999975

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.16  E-value=7.5e-12  Score=93.39  Aligned_cols=69  Identities=16%  Similarity=0.046  Sum_probs=62.7

Q ss_pred             hhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501           65 STELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI  138 (143)
Q Consensus        65 st~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri  138 (143)
                      ..++++|+.+..|++++     ....|++.+|+.+|++++|.|+..|+++|+.+|.|+||.||+++||++|...
T Consensus        75 ~~~~~fp~a~IkRi~k~-----~g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~  143 (151)
T d1f1ea_          75 YDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY  143 (151)
T ss_dssp             CCSCCCCHHHHHHHHHH-----TTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             cccCccCHHHHHHHHHc-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence            35778999998888875     2467999999999999999999999999999999999999999999999875

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=98.98  E-value=3.9e-10  Score=78.57  Aligned_cols=69  Identities=20%  Similarity=0.243  Sum_probs=66.7

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      ++..|..+|..|+.++++|+++++.|+..|+...++++.++-++|..++.+.||.||..+|||.|.+|.
T Consensus         1 R~esy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~   69 (92)
T d1tzyb_           1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL   69 (92)
T ss_dssp             CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999985

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=98.93  E-value=3.5e-10  Score=73.46  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|+.+..|++++.     .+.+++.+|+.+|++++|.|+..|.++|+.++.|+||.||++.|+..|.+
T Consensus         4 LP~a~I~ri~k~~-----~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk   66 (68)
T d1htaa_           4 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK   66 (68)
T ss_dssp             SCHHHHHHHHHHT-----TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence            4666677776653     35689999999999999999999999999999999999999999999875

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=98.80  E-value=1.5e-09  Score=70.12  Aligned_cols=62  Identities=26%  Similarity=0.307  Sum_probs=52.5

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      |+.+..|+++    .. .+.+++.+|..+|++++|.|+..|.++|+.+|.|++|.||.+.||..|.+
T Consensus         4 P~a~I~rI~k----~~-~~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_           4 PIAPVDRLIR----KA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             CHHHHHHHHH----HT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             CHHHHHHHHH----hC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            4444445444    33 34699999999999999999999999999999999999999999998863

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.9e-08  Score=64.69  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             hhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           69 LIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        69 lI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      ++|+....|++++..   ..+.+++.+|..+++.++|.|+..|.++|+.+|...+|.||.++||.-|..=.|
T Consensus         2 ~LP~a~v~ri~K~~~---p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~   70 (87)
T d1n1ja_           2 YLPIANVARIMKNAI---PQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG   70 (87)
T ss_dssp             CCCHHHHHHHHHHTS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred             CCcHhHHHHHHHHhC---CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcC
Confidence            345444444444332   357899999999999999999999999999999999999999999998875443

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.22  E-value=1e-06  Score=64.92  Aligned_cols=68  Identities=9%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      +|++|-.|+++++.    ++.|++.+|.++|++..+.|+..+-.+|+.++-|++|-||+++||+.+.++.|.
T Consensus         2 lP~a~I~rilk~~~----~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~   69 (151)
T d1f1ea_           2 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV   69 (151)
T ss_dssp             CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred             CCccHHHHHHHHhC----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence            35556566665543    678999999999999999999999999999999999999999999999998874

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.16  E-value=6.8e-07  Score=60.16  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=52.3

Q ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhcc
Q 048501           79 VREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRGE  141 (143)
Q Consensus        79 VrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg~  141 (143)
                      |+.|+.... --|++.++.+.|.+..|.||..+..+|..+|-|++|.||+..||.+|++=-|+
T Consensus        15 i~Riar~~G-v~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr~g~   76 (82)
T d2huec1          15 IRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR   76 (82)
T ss_dssp             HHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred             HHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhcCC
Confidence            344444433 35899999999999999999999999999999999999999999999873343

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.3e-06  Score=62.02  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=60.5

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHhc
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIRG  140 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rirg  140 (143)
                      ++.+|+....+++++..    ++.+++.+|..+|++++|-|+..|-..|+..|...+|-||++.||.-|..-.|
T Consensus         2 dl~LP~a~I~kI~K~~~----~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~~   71 (135)
T d1jfib_           2 DLTIPRAAINKMIKETL----PNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG   71 (135)
T ss_dssp             CCCCCHHHHHHHHHHHS----TTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred             cccccHHHHHHHHhhCC----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcC
Confidence            45677777777777654    46899999999999999999999999999999999999999999998876544

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.1e-06  Score=54.47  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             ccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           74 PFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        74 pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      |..| |+.|++.-....+++.+|..+++.|+|.|+..|.+.|+.+|.-.+|-||+++||..+..
T Consensus         2 P~sr-VkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~   64 (78)
T d1n1jb_           2 PLAR-IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT   64 (78)
T ss_dssp             CHHH-HHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             CHHH-HHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHh
Confidence            4444 47788765566899999999999999999999999999999999999999999998864

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.5e-06  Score=54.65  Aligned_cols=62  Identities=16%  Similarity=0.186  Sum_probs=51.5

Q ss_pred             CccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHH
Q 048501           73 LPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLA  135 (143)
Q Consensus        73 ~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa  135 (143)
                      +|..| |+.|++.-.+.-+++.+|..+|..++|.|+..|.+.|+..+...+|.||+++|+..|
T Consensus         3 fP~sr-Vkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~a   64 (66)
T d1jfia_           3 FPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC   64 (66)
T ss_dssp             CCHHH-HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred             CChHH-HHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence            45554 677888665667999999999999999999999999999999999999999999865

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.1e-06  Score=61.52  Aligned_cols=71  Identities=11%  Similarity=0.121  Sum_probs=60.0

Q ss_pred             hhhhhhhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           62 YQKSTELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        62 yQkst~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      ..+..+|.+|-.++.|+.++..     ..|+.++|-..|-.+-|.+...++|.|.-.|.|++|.||+++||++|.+
T Consensus        92 rs~ragL~fPV~rv~rlLk~~~-----a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~  162 (172)
T d1q9ca_          92 RKRRNPLSLPVEKIHPLLKEVL-----GYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC  162 (172)
T ss_dssp             -------CCCHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred             cccccCceecHHHHHHHHHhcc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHh
Confidence            3344568899999999999863     4699999999999999999999999999999999999999999999965

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.68  E-value=4.4e-05  Score=51.20  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=52.2

Q ss_pred             HHHHHHhh-hccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501           79 VREIAQDF-KTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI  138 (143)
Q Consensus        79 VrEI~~~~-~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri  138 (143)
                      |+.|+.+. ..+..++.+|+.+++.++|.|+..|-+.|+.+|.-.+|-||+++|+.-|..=
T Consensus         5 i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~   65 (89)
T d2bykb1           5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE   65 (89)
T ss_dssp             HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence            44555543 4678999999999999999999999999999999999999999999877653

>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)42
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=0.00013  Score=47.60  Aligned_cols=63  Identities=19%  Similarity=0.382  Sum_probs=55.7

Q ss_pred             chhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           76 QRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        76 ~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      .++|..|+.+.+- .-|+...+.-|=|.+=.|..++++||...+-||++.+|...|++||...|
T Consensus         4 a~~i~~iL~~~GV-~~yeprV~~qlLef~yRYtt~VL~DA~vys~HA~k~~id~dDVkLAi~~r   66 (68)
T d1tafa_           4 AQVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT   66 (68)
T ss_dssp             HHHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhc
Confidence            3678888887752 36889999999999999999999999999999999999999999997654

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.33  E-value=0.00017  Score=47.14  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             hHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHH
Q 048501           78 LVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRI  138 (143)
Q Consensus        78 LVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~ri  138 (143)
                      -|+.|++.++- -....++..+|-+=+|.-|-.++++|..|+.|+||.+++..||.-|.++
T Consensus        11 sik~iAeS~Gi-~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALkv   70 (70)
T d1tafb_          11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence            36777776542 1367899999999999999999999999999999999999999998764

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00035  Score=46.03  Aligned_cols=64  Identities=23%  Similarity=0.309  Sum_probs=55.2

Q ss_pred             hccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           70 IRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        70 I~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +.|---+.||++|    .++..+..++-+.|-+.|++|+.+..+.|-.+|-|.+--||.++|+||...
T Consensus         4 l~K~~L~eLv~~i----dp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   67 (74)
T d1h3ob_           4 LTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   67 (74)
T ss_dssp             SCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             ccHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            3344445666666    568889999999999999999999999999999999999999999999753

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.01  E-value=0.042  Score=34.88  Aligned_cols=47  Identities=4%  Similarity=-0.001  Sum_probs=41.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhhh-hccCccccCcccHHHHHH
Q 048501           91 WFQSSAVAALQEAAEAYLVGLFEDTNLCT-IHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        91 rfq~~Al~aLQeaaEa~Lv~lfeda~l~a-~HakRvTi~~kDiqLa~r  137 (143)
                      .++.+|+-++-.|+|-|+..|-+.|..++ .+.++-||..+|+.-+..
T Consensus         9 ~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~   56 (72)
T d2byka1           9 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN   56 (72)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHc
Confidence            57889999999999999999999998887 577778999999988764

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.049  Score=37.45  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=54.4

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.-+.|+.++    -....|+.++|---|--+-|.....++|.|.-.+...++..|+|+||+|+.+
T Consensus         9 gL~FpV~ri~r~Lk~----~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lair   75 (106)
T d1u35c1           9 GVIFPVGRMLRYIKK----GHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   75 (106)
T ss_dssp             TCSSCHHHHHHHHHH----HSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             CcccCHHHHHHHHhC----CCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhccc
Confidence            455555555556554    2345688999998899999999999999999999999999999999999964

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=93.33  E-value=0.076  Score=36.48  Aligned_cols=67  Identities=22%  Similarity=0.209  Sum_probs=53.1

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.-..|+.++    .....|+.++|---|--+-|.....++|.|.-.|...++..|+|+||+|+.+
T Consensus        10 gL~FpV~rv~r~Lk~----~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAir   76 (106)
T d1tzya_          10 GLQFPVGRVHRLLRK----GNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   76 (106)
T ss_dssp             TCSSCHHHHHHHHHH----TTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             CccCChHHHHHHHHc----CccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhccc
Confidence            344444444455543    3345688999988898899999999999999999999999999999999964

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=91.63  E-value=0.14  Score=34.75  Aligned_cols=68  Identities=18%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             hhhhccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHH
Q 048501           67 ELLIRKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARR  137 (143)
Q Consensus        67 ~llI~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~r  137 (143)
                      +|.+|-.-|.|+.++-..   ...|+.+.|---|--.-|.....++|.|...+.-.++..|+|+||+++.+
T Consensus         9 gL~FpVgrv~r~L~~~~~---~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~   76 (103)
T d1f66c_           9 GLQFPVGRIHRHLKSRTT---SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   76 (103)
T ss_dssp             TCSSCHHHHHHHHHHTSC---SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred             CcccChHHHHHHHhccCc---cceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhcccc
Confidence            355555556666654321   23568888888898899999999999999999999999999999999975

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.49  Score=34.69  Aligned_cols=59  Identities=12%  Similarity=0.094  Sum_probs=45.0

Q ss_pred             ccCccchhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccCcccHHHHHHHh
Q 048501           71 RKLPFQRLVREIAQDFKTDLWFQSSAVAALQEAAEAYLVGLFEDTNLCTIHTKRVTIMPKDIQLARRIR  139 (143)
Q Consensus        71 ~k~pF~RLVrEI~~~~~~~~rfq~~Al~aLQeaaEa~Lv~lfeda~l~a~HakRvTi~~kDiqLa~rir  139 (143)
                      -|.-|-..++.|..++++++.+...|++.|++..-.+|..|      |.    --+.+..||+-..++.
T Consensus        14 w~g~f~~~i~KVl~qvhP~l~i~~~Al~~i~~~i~~ll~~L------~~----~~p~sv~dVe~~v~~~   72 (172)
T d1q9ca_          14 WRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNML------CQ----AQPRSASDVEERVQKS   72 (172)
T ss_dssp             HTTSSHHHHHHHHHHHCSSSBCCHHHHHHHHHHHHHHHHHH------HT----TCCCSTTHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHH------Hc----cCCccHHHHHHHHHHh
Confidence            35679999999999999999999999988877655554444      22    2255777999887764