Citrus Sinensis ID: 048516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MYRFICKTLIDSLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDLSFLTMPQSQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccEEcccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccEHHHccccccccccHHHcccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHcccHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHcHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccHEEEEcHHHcccHHHHHHHHHHHccccccccccHHHEcccHHHHHHHHHHHHHHHcccHHEEcccccc
Coil and Loop (DISEMBL)
MYRFICKTLIDSLHfnfnfnnsahihkspflssisllffssssssipkkektkIDLADYLInrqhfspesaseasslnfslkdtensDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHntlkpkikifhefgfsssdivdiissdpwllhrsaeNQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKtliptidilkncgvsssQIVKYVYTyptfflykpekVRCFVQRVdeigfdrnskmylpaIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMfrsmppaftvseRKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSknllrrktglatvcklskgkflekyvlpyqdelgdlsfltmpqsq
Flexible Loop (DISEMBL)
MYRFICKTLIDSLHFNFNFNNSAHIHKSPFLSSISLLFFSsssssipkkekTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIptidilkncgvsssqIVKYVYTYPTFFLYKPEKVRCFVQRVDeigfdrnskmylpAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRsmppaftvserkIRSVVETLlrrrdvdissivnnaslflcsiesnlkprMRVYDMLKsknllrrktglatvcklskgkfleKYVLPYQDelgdlsfltmpqsq
Low Complexity Region (SEG)
MYRFICKTLIDSLHFNFNFNNSAHIHKspflssisllffssssssipKKEKTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFsssdivdiissdPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDLSFLTMPQSQ
Disordered region (IsUnstruct)
*YRFICKTLIDSLHFNFNFNNSAHIHKSPFLSSISLLFF***************DLADYLI***************************************STHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDLSFL******
Disordered Region (DISOPRED)
***FIC*TLIDSLHFNF************FLSSISL******************DLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDLSFLTMP***
Disordered Region (DISEMBL)
MYRFICKTLIDSLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLINRQHFS***********FSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDLSFLTMPQSQ
Disordered Region (DISPRO)
MYRFICKTLIDSLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSI*****TKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDLSFLTMP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRFICKTLIDSLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDLSFLTMPQSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
255545682	380	conserved hypothetical protein [Ricinus	0.922	0.944	0.561	1e-112
302141941	425	unnamed protein product [Vitis vinifera]	0.868	0.795	0.510	3e-82
147817763	2634	hypothetical protein VITISV_028996 [Viti	0.943	0.139	0.322	6e-48
359479826	398	PREDICTED: uncharacterized protein LOC10	0.943	0.922	0.322	6e-48
147817762	379	hypothetical protein VITISV_028995 [Viti	0.820	0.841	0.328	1e-44
225436741	462	PREDICTED: uncharacterized protein LOC10	0.940	0.792	0.327	2e-44
297744185	885	unnamed protein product [Vitis vinifera]	0.820	0.360	0.340	2e-44
359480040	390	PREDICTED: uncharacterized protein LOC10	0.820	0.817	0.340	2e-44
296086611	408	unnamed protein product [Vitis vinifera]	0.940	0.897	0.327	2e-44
224135569	388	predicted protein [Populus trichocarpa]	0.917	0.920	0.337	2e-43

>gi|255545682|ref|XP_002513901.1| conserved hypothetical protein [Ricinus communis] gi|223546987|gb|EEF48484.1| conserved hypothetical protein [Ricinus communis]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/363 (56%), Positives = 262/363 (72%), Gaps = 4/363 (1%)

Query: 21  NSAHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLINRQHFSPESASEA-SSLNF 79
           N   +HKSP  +SISL+FFS+S    P + K K+ + DYLIN Q FSPESAS   SS   
Sbjct: 16  NYQQLHKSPIHNSISLIFFSTSR---PSEIKPKVTIFDYLINHQQFSPESASNVLSSTTK 72

Query: 80  SLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSD 139
            +K  +N+D VLSFL ESGFS  HIE +V K P +L      ++KPKIKIF + GF S D
Sbjct: 73  YVKKPQNADLVLSFLTESGFSKIHIENVVQKVPQVLSSKFETSIKPKIKIFQDLGFESID 132

Query: 140 IVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTI 199
           I DI+S+DPW+L RSA+N+   S LVL +VLG+NAGV   +K +GWFL+ DLE+ ++P I
Sbjct: 133 IADIVSADPWVLTRSADNRLGPSLLVLKNVLGTNAGVVTLLKLSGWFLKHDLERVMMPNI 192

Query: 200 DILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSM 259
           D LK+CG+SSSQIVKYVY +P FFL KPE ++ FV+RVDE+GFDR SKM+LPAIRTMSSM
Sbjct: 193 DYLKSCGISSSQIVKYVYNFPRFFLMKPESIKGFVKRVDEMGFDRKSKMFLPAIRTMSSM 252

Query: 260 TKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVN 319
           T E WELKLKL R LG SE+NILS+F+ +P AF +SERKI+ V + LL   ++DIS IV 
Sbjct: 253 TVENWELKLKLLRDLGLSEENILSVFKRVPQAFAISERKIKDVTKLLLNVGNLDISYIVR 312

Query: 320 NASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGD 379
           +  L +CS+   LKPR+ V  +L++K LL++K    +  K+S  +FL KYV+PY DELGD
Sbjct: 313 HPDLLICSVNQRLKPRLAVLQVLENKKLLQKKPSFTSFFKISGSQFLHKYVIPYSDELGD 372

Query: 380 LSF 382
           LS 
Sbjct: 373 LSL 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141941|emb|CBI19144.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/343 (51%), Positives = 227/343 (66%), Gaps = 5/343 (1%)

Query: 1   MYRFICKTLIDSLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYL 60
           M  +ICK+LI SL+     ++  H+HK P  S    L F SSS    KK    +  ADYL
Sbjct: 1   MTLYICKSLI-SLYLK---SSQHHLHK-PHFSCSLSLLFFSSSGPQKKKPAIPVSTADYL 55

Query: 61  INRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLH 120
           I R  FS E+A  A+S+   LK  E SDS+L+FL+ESGFS TH+EK V + P +L  NL 
Sbjct: 56  IKRHQFSQETALTAASVITYLKKPEKSDSILAFLKESGFSQTHLEKTVKRVPRVLSANLD 115

Query: 121 NTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAI 180
            T+KPKIKIF + G + +DI  IIS DPW+L+RSA N    S + L SV+GSN+ V K +
Sbjct: 116 KTIKPKIKIFQDLGCTPTDIAYIISQDPWILNRSANNGLMPSIVALQSVMGSNSDVSKVL 175

Query: 181 KATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEI 240
           K    FL+ DL KTL P I+ +K+CG+S+SQI K V+++P F L+KPE ++  V+RVDE+
Sbjct: 176 KICARFLKHDLGKTLKPNIEFMKSCGISTSQIKKVVFSFPRFLLHKPESIKDSVRRVDEM 235

Query: 241 GFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIR 300
           G DR SKMYL AIR +SSMT E WELKLKLFRSLGFSE+ I++ FR  P  F +SERKI 
Sbjct: 236 GCDRKSKMYLHAIRNLSSMTLENWELKLKLFRSLGFSENEIVTSFRKAPQVFALSERKII 295

Query: 301 SVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLK 343
                LL   + D+S +VN+A L + SIE  LKPR RV + L+
Sbjct: 296 EGTRFLLTVGNSDMSYLVNHAELLIFSIEKRLKPRFRVLEFLQ 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817763|emb|CAN68941.1| hypothetical protein VITISV_028996 [Vitis vinifera]

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 207/378 (54%), Gaps = 11/378 (2%)

Query: 4    FICKTLIDSLHFNFNFNNS-AHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLIN 62
            F+C+ ++   +    F  S A +H   FL +  LL F S SS  PK+    +    YL+N
Sbjct: 2241 FLCRRVVSLANVAQVFEISRAPVH---FLQNRQLLMFRSFSS--PKQHSFTVS---YLMN 2292

Query: 63   RQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNT 122
                SPESA  AS      +  E +DSVL+ LR  G ++THI K+V++ P +L  N   T
Sbjct: 2293 SCGLSPESALSASR-KVQFETPERADSVLALLRNYGCTNTHISKIVSRYPVLLTANPEKT 2351

Query: 123  LKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKA 182
            L PK++ F   GFS  D+  I+++ P +L RS EN    S+  L SV+  N  + +A+  
Sbjct: 2352 LLPKLEFFRSVGFSGPDLASIVAASPQILRRSLENHVIPSYNFLKSVVIVNEKIVRALSK 2411

Query: 183  TGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGF 242
            + W   + L+ T+ P I+ILK  GV  S+I  +V  +P+      +K    V+ V E+GF
Sbjct: 2412 SYWLNGQTLQNTIAPNIEILKEIGVPISKISFFVTCHPSAVSQNKKKFSRIVKMVTEMGF 2471

Query: 243  DRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSV 302
            D     ++ A++ +  M +  WE K++++R  G ++D+I+ MF+S P     SERKI SV
Sbjct: 2472 DPLRVKFVKAVKVICEMGESMWEHKMEVYRGWGLTDDDIMLMFKSDPLCMAASERKIMSV 2531

Query: 303  VETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSK 362
            ++ L+ +   + +++V   ++FLCS+E  + P   V  +++ K L+++   L  +   S+
Sbjct: 2532 MDFLVNKMGWEHAAVVRYPTVFLCSLEKKIIPWCSVVKVIQMKGLVKKDLCLC-ILGYSE 2590

Query: 363  GKFLEKYVLPYQDELGDL 380
              F  ++V+ Y+ ++ +L
Sbjct: 2591 KNFFNRFVVRYEQDVAEL 2608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479826|ref|XP_003632359.1| PREDICTED: uncharacterized protein LOC100266539 [Vitis vinifera]

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 207/378 (54%), Gaps = 11/378 (2%)

Query: 4   FICKTLIDSLHFNFNFNNS-AHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLIN 62
           F+C+ ++   +    F  S A +H   FL +  LL F S SS  PK+    +    YL+N
Sbjct: 5   FLCRRVVSLANVAQVFEISRAPVH---FLQNRQLLMFRSFSS--PKQHSFTVS---YLMN 56

Query: 63  RQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNT 122
               SPESA  AS      +  E +DSVL+ LR  G ++THI K+V++ P +L  N   T
Sbjct: 57  SCGLSPESALSASR-KVQFETPERADSVLALLRNYGCTNTHISKIVSRYPVLLTANPEKT 115

Query: 123 LKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKA 182
           L PK++ F   GFS  D+  I+++ P +L RS EN    S+  L SV+  N  + +A+  
Sbjct: 116 LLPKLEFFRSVGFSGPDLASIVAASPQILRRSLENHVIPSYNFLKSVVIVNEKIVRALSK 175

Query: 183 TGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGF 242
           + W   + L+ T+ P I+ILK  GV  S+I  +V  +P+      +K    V+ V E+GF
Sbjct: 176 SYWLNGQTLQNTIAPNIEILKEIGVPISKISFFVTCHPSAVSQNKKKFSRIVKMVTEMGF 235

Query: 243 DRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSV 302
           D     ++ A++ +  M +  WE K++++R  G ++D+I+ MF+S P     SERKI SV
Sbjct: 236 DPLRVKFVKAVKVICEMGESMWEHKMEVYRGWGLTDDDIMLMFKSDPLCMAASERKIMSV 295

Query: 303 VETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSK 362
           ++ L+ +   + +++V   ++FLCS+E  + P   V  +++ K L+++   L  +   S+
Sbjct: 296 MDFLVNKMGWEHAAVVRYPTVFLCSLEKKIIPWCSVVKVIQMKGLVKKDLCLC-ILGYSE 354

Query: 363 GKFLEKYVLPYQDELGDL 380
             F  ++V+ Y+ ++ +L
Sbjct: 355 KNFFNRFVVRYEQDVAEL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817762|emb|CAN68940.1| hypothetical protein VITISV_028995 [Vitis vinifera]

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 179/323 (55%), Gaps = 4/323 (1%)

Query: 58  DYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLI 117
           D L+N    SP+SA  AS      +  E +DSVL+ LR  G ++THI K+V+K P +   
Sbjct: 35  DLLLN--GLSPQSALSASR-KLQFETPEGADSVLALLRNYGCTNTHIXKIVSKYPALFTT 91

Query: 118 NLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVC 177
           +   TL PK++ F   GFS  DI  I+SS+P++L R  +N    ++  L SV+  N  V 
Sbjct: 92  DPEKTLLPKLEFFRSVGFSGPDIAGILSSNPYILKRGLQNNLIPTYTFLKSVVMVNENVV 151

Query: 178 KAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRV 237
           + ++ T W   + ++K + P I IL   GV  S I+  V  +P   +   EK    V++V
Sbjct: 152 RVLRKTHWITVQSVQKAITPNIAILTEIGVPMSNILFLVTCHPNAVIQNREKFSTSVKKV 211

Query: 238 DEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSER 297
            E+GFD     +L A++ +  M +  WE ++++++  G ++D I+SMFR  P     SE+
Sbjct: 212 XEMGFDPLKVSFLKAVQVICGMGESIWEQRMEVYKRWGLTDDEIMSMFRLDPLCMRSSEK 271

Query: 298 KIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATV 357
           KI SV++ L+ +   + ++I    ++F+ S+E  + PR  V  +L+ K L+++   L  +
Sbjct: 272 KIMSVMDFLVNKMGWEPATIARYPTVFMRSLEKKIIPRCSVVKVLQMKGLVKKDLCLG-I 330

Query: 358 CKLSKGKFLEKYVLPYQDELGDL 380
              S+  F +K+VL Y+ E+ +L
Sbjct: 331 LGCSENNFFDKFVLKYEQEVPEL 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436741|ref|XP_002269551.1| PREDICTED: uncharacterized protein LOC100261332 [Vitis vinifera]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 4   FICKTLIDSLHFNFNFNNSAHIHKSP--FLSSISLLFFSSSSSSIPKKEKTKIDLADYLI 61
           F+C+ ++       N      I ++P  FL +  LL F S  S  PK+    +    YL+
Sbjct: 5   FLCRRVVSLT----NVGQMFEISRTPVHFLQNSQLLMFRSFFS--PKQHSFTVS---YLM 55

Query: 62  NRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHN 121
           N    SPESA  AS      +  E +DSVL+ LR  G ++THI K+V+K P +L  N   
Sbjct: 56  NSCGLSPESALSASR-KIQFETPERADSVLALLRNYGCTNTHISKIVSKYPLLLTANPEK 114

Query: 122 TLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIK 181
           TL PK++ F   GFS  D+  II + P +L RS EN    ++  L SV   N  + +A++
Sbjct: 115 TLLPKLEFFRSVGFSGPDLAGIIVAKPSILKRSLENHVIPNYNFLKSVGMINENIARALR 174

Query: 182 ATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIG 241
            T W   + ++ T +P I  LK  GV  S I  ++  +P+      EK    V++V E+G
Sbjct: 175 RTYWLTGQSVQNTNVPNIATLKEIGVPMSNISFFLTCHPSAVSQNKEKFSTNVKKVIEMG 234

Query: 242 FDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRS 301
           FD     +L A+R +  M +  WE K++++R  GF++D I+ M R  P   T SERKI S
Sbjct: 235 FDPLRVTFLKAVRLICGMGESMWEHKMEVYRRWGFTDDEIMLMIRLDPLCMTSSERKIMS 294

Query: 302 VVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLS 361
           V++ L+ +   + ++I    ++FL S+E  + P   V  +L+ K L+++   L+ +   S
Sbjct: 295 VMDFLVNKMGWEPAAIGRYPTVFLRSLEKKIIPWCSVVKVLQIKGLVKKDLSLSFLGS-S 353

Query: 362 KGKFLEKYVLPYQDELGDL 380
           K  F  ++V+ Y+ ++ +L
Sbjct: 354 KKNFFNRFVVKYEHDVPEL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744185|emb|CBI37155.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 180/323 (55%), Gaps = 4/323 (1%)

Query: 59  YLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLIN 118
           YL+N    SPE+A  AS      ++ +N DS+L+ LR SG ++THI K+V K P++LL+N
Sbjct: 76  YLVNSCGLSPETAISASG-KIHFENPKNPDSILALLRNSGCTNTHITKIVTKLPSLLLVN 134

Query: 119 LHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCK 178
              TL PK+  F   G S + +  I+SS+P +L RS EN     +  L S+  SN    K
Sbjct: 135 PEKTLLPKLDFFGSMGLSGARLASILSSEPIVLMRSLENALIPKYNFLKSLQISNEDAIK 194

Query: 179 AIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVD 238
            +K++ W    +LE+ +   I +++  GV  S I   V  Y T    + +K    V++V 
Sbjct: 195 ILKSSCWISCGNLERIIATNIAVMREIGVPISHISVLVARYHT-ICQRSDKFSENVKKVV 253

Query: 239 EIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERK 298
           E+GF+     ++ A++ +   T+  W+ K++++R  G+SED ILS FR+ P    +SE+K
Sbjct: 254 EMGFNPLKFAFVNALQAVCQTTESTWQQKMEMYRRWGWSEDEILSAFRNRPQCMQLSEKK 313

Query: 299 IRSVVETLLRRRDVDISSIVNNASLFLC-SIESNLKPRMRVYDMLKSKNLLRRKTGLATV 357
           +  V++ L+ +      ++V  A + +C + E  + PR  V  +L  K L+++   L T 
Sbjct: 314 VTKVLDFLVNKMGWR-PAVVARAPIAICLNFEKRVAPRCSVVKVLSLKGLIKKDLKLGTF 372

Query: 358 CKLSKGKFLEKYVLPYQDELGDL 380
             L +G FL+KYV+ YQDE+  L
Sbjct: 373 LNLPEGDFLDKYVIKYQDEIPQL 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480040|ref|XP_002278053.2| PREDICTED: uncharacterized protein LOC100264327 [Vitis vinifera]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 180/323 (55%), Gaps = 4/323 (1%)

Query: 59  YLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLIN 118
           YL+N    SPE+A  AS      ++ +N DS+L+ LR SG ++THI K+V K P++LL+N
Sbjct: 53  YLVNSCGLSPETAISASG-KIHFENPKNPDSILALLRNSGCTNTHITKIVTKLPSLLLVN 111

Query: 119 LHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCK 178
              TL PK+  F   G S + +  I+SS+P +L RS EN     +  L S+  SN    K
Sbjct: 112 PEKTLLPKLDFFGSMGLSGARLASILSSEPIVLMRSLENALIPKYNFLKSLQISNEDAIK 171

Query: 179 AIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVD 238
            +K++ W    +LE+ +   I +++  GV  S I   V  Y T    + +K    V++V 
Sbjct: 172 ILKSSCWISCGNLERIIATNIAVMREIGVPISHISVLVARYHT-ICQRSDKFSENVKKVV 230

Query: 239 EIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERK 298
           E+GF+     ++ A++ +   T+  W+ K++++R  G+SED ILS FR+ P    +SE+K
Sbjct: 231 EMGFNPLKFAFVNALQAVCQTTESTWQQKMEMYRRWGWSEDEILSAFRNRPQCMQLSEKK 290

Query: 299 IRSVVETLLRRRDVDISSIVNNASLFLC-SIESNLKPRMRVYDMLKSKNLLRRKTGLATV 357
           +  V++ L+ +      ++V  A + +C + E  + PR  V  +L  K L+++   L T 
Sbjct: 291 VTKVLDFLVNKMGWR-PAVVARAPIAICLNFEKRVAPRCSVVKVLSLKGLIKKDLKLGTF 349

Query: 358 CKLSKGKFLEKYVLPYQDELGDL 380
             L +G FL+KYV+ YQDE+  L
Sbjct: 350 LNLPEGDFLDKYVIKYQDEIPQL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086611|emb|CBI32246.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 4   FICKTLIDSLHFNFNFNNSAHIHKSP--FLSSISLLFFSSSSSSIPKKEKTKIDLADYLI 61
           F+C+ ++       N      I ++P  FL +  LL F S  S  PK+    +    YL+
Sbjct: 5   FLCRRVVSLT----NVGQMFEISRTPVHFLQNSQLLMFRSFFS--PKQHSFTVS---YLM 55

Query: 62  NRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHN 121
           N    SPESA  AS      +  E +DSVL+ LR  G ++THI K+V+K P +L  N   
Sbjct: 56  NSCGLSPESALSASR-KIQFETPERADSVLALLRNYGCTNTHISKIVSKYPLLLTANPEK 114

Query: 122 TLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIK 181
           TL PK++ F   GFS  D+  II + P +L RS EN    ++  L SV   N  + +A++
Sbjct: 115 TLLPKLEFFRSVGFSGPDLAGIIVAKPSILKRSLENHVIPNYNFLKSVGMINENIARALR 174

Query: 182 ATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIG 241
            T W   + ++ T +P I  LK  GV  S I  ++  +P+      EK    V++V E+G
Sbjct: 175 RTYWLTGQSVQNTNVPNIATLKEIGVPMSNISFFLTCHPSAVSQNKEKFSTNVKKVIEMG 234

Query: 242 FDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRS 301
           FD     +L A+R +  M +  WE K++++R  GF++D I+ M R  P   T SERKI S
Sbjct: 235 FDPLRVTFLKAVRLICGMGESMWEHKMEVYRRWGFTDDEIMLMIRLDPLCMTSSERKIMS 294

Query: 302 VVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLS 361
           V++ L+ +   + ++I    ++FL S+E  + P   V  +L+ K L+++   L+ +   S
Sbjct: 295 VMDFLVNKMGWEPAAIGRYPTVFLRSLEKKIIPWCSVVKVLQIKGLVKKDLSLSFLGS-S 353

Query: 362 KGKFLEKYVLPYQDELGDL 380
           K  F  ++V+ Y+ ++ +L
Sbjct: 354 KKNFFNRFVVKYEHDVPEL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135569|ref|XP_002322106.1| predicted protein [Populus trichocarpa] gi|222869102|gb|EEF06233.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 189/379 (49%), Gaps = 22/379 (5%)

Query: 1   MYRFICKTLID---------SLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSIPKKEK 51
           M+ F+ K+L+            H  F+F +S  I        I+L FF S+  S P K+ 
Sbjct: 1   MFYFLYKSLLQHGRHAATLSPTHKLFSFQHSPSI--------ITLRFFISTLES-PNKQS 51

Query: 52  TKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKK 111
                A YLIN+  FS ESA  AS  + S K  +N DSV+   +  G S   I K+V K 
Sbjct: 52  FA---ASYLINKFVFSSESALSASK-HLSFKTPDNPDSVIRMFQHYGLSQDQIFKLVKKY 107

Query: 112 PNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLG 171
           P +L      TL PK+K FH  G S +DI  I+ + P +L+RS ENQ   +F  L ++L 
Sbjct: 108 PRVLSCKPEKTLLPKLKFFHSKGMSGNDIAHILCAHPCILNRSLENQIILNFNFLGNLLQ 167

Query: 172 SNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVR 231
           SN     A+K     L   ++  L P IDIL+  GV    I   V+  P   +  P  +R
Sbjct: 168 SNEKTIAAVKRYSPILYHKIDTYLKPCIDILEEYGVPKRHIATLVHRSPRSVMMSPNHLR 227

Query: 232 CFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPA 291
              + V E+G D     +  A+  M  ++K  WE +L +++S G+SE+++L+ F   P  
Sbjct: 228 SIAETVREMGCDPLKPHFATAVMVMGLLSKSGWERRLGVYKSWGWSEEDVLAAFIKEPWC 287

Query: 292 FTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRK 351
              S+ KI +V++ L+   D + S IV N  L    +++   PR  V   L SK L++RK
Sbjct: 288 MMTSDDKIMAVMDFLVNNMDCEPSFIVKNPYLLKPGLKTTFIPRASVAQFLLSKQLIKRK 347

Query: 352 TGLATVCKLSKGKFLEKYV 370
             L T+   S+  FLEK+V
Sbjct: 348 PNLVTLFLCSEKLFLEKFV 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.848	0.814	0.292	1.3e-36
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.771	0.767	0.277	1.3e-34
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.853	0.851	0.252	9.1e-29
TAIR|locus:2036868	418	AT1G61980 "AT1G61980" [Arabido	0.647	0.602	0.237	3.9e-15
TAIR|locus:2036813	415	AT1G62010 "AT1G62010" [Arabido	0.629	0.590	0.235	1.5e-14
TAIR|locus:2018057	437	AT1G62120 "AT1G62120" [Arabido	0.632	0.562	0.232	3e-14
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.627	0.583	0.236	1.4e-13
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.614	0.531	0.229	2.8e-13
TAIR|locus:2036878	414	AT1G61990 "AT1G61990" [Arabido	0.629	0.591	0.249	6.6e-13
TAIR|locus:1006230704	461	AT1G62085 "AT1G62085" [Arabido	0.629	0.531	0.229	1.1e-12

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 98/335 (29%), Positives = 166/335 (49%)

Query:    48 KKEKTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKM 107
             +++K    L +YLI+    SP+SA+ AS     L   E  ++VL+ LR+ GF++  I  +
Sbjct:    64 QQQKLSFTL-NYLIDSCGLSPDSATVASR-KLLLDSPERPNTVLNLLRDHGFTTAQISSL 121

Query:   108 VAKKPNILLINLHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLN 167
             V K+P +LL N  + L PK+  F   G             P +L RS  NQ   S+  L 
Sbjct:   122 VKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLK 181

Query:   168 SVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYT-YPTFFLYK 226
             SVL S+  +  A++ T W    D  K L+P I+ +   GV   + +K + T +P   + K
Sbjct:   182 SVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPE-KCIKLLLTHFPEAVMQK 240

Query:   227 PEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSM-TKEKWELKLKLFRSLGFSEDNILSMF 285
               + +   ++  E+GF+     ++ AI  +S    K  W+   ++++  G+SED+I+  F
Sbjct:   241 NHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAF 300

Query:   286 RSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSK 345
             +  P    +SERKI   +E  +   ++   SI     +   S+E  + PR  V  +L S 
Sbjct:   301 KKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSN 360

Query:   346 NLLRRKTGLATVCKLSKGKFLEKYVLPYQDELGDL 380
              L++    L ++    +  FLEK V+ Y++EL +L
Sbjct:   361 GLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPEL 395

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 85/306 (27%), Positives = 156/306 (50%)

Query:    80 SLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFXXXX 139
             +LK  E   SV+  L+   FS T I+K +   P ++  N+   L+PK++ F + GF    
Sbjct:    64 NLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSG 123

Query:   140 XXXXXXXXPWLLHRSAENQFQRSFLVLNSVLG-SNAGVCKAIKATGWFL-RRDLEKTLIP 197
                       ++  S   +   +  +L S++   +  +   +   GW L  RD    L+P
Sbjct:   124 LGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLP 183

Query:   198 TIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMS 257
              I  L+ CG+  SQ+   +   P  F    EK+R +V R  ++GF  NS+M + A+ ++S
Sbjct:   184 NISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLS 243

Query:   258 SMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSI 317
             S++++ ++ K+KLF + GFSED I  + R  P     SE K+    E  L+R  ++  ++
Sbjct:   244 SLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREAL 303

Query:   318 VNNASLFLCSIESNLKPRMRVYDMLKSKNLL----RRKTGLATVCKLSKGKFLEKYVLPY 373
                  +   ++E  + PR++V  +L+ K LL    ++K  +  + ++++  FLEKYV+ +
Sbjct:   304 AKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRF 363

Query:   374 QDELGD 379
              DE+ +
Sbjct:   364 GDEIAE 369

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 85/336 (25%), Positives = 152/336 (45%)

Query:    48 KKEKTKID--LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIE 105
             +K+K  ++     YL++    S ESA +++S    L  ++  DSVL+  ++ GF++  I 
Sbjct:    48 EKQKPCLESFTVSYLVDSCGLSLESA-KSNSRFVKLVSSKKPDSVLALFKDHGFTNDQIT 106

Query:   106 KMVAKKPNILLINLHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLV 165
              ++   P +L ++  + + PK+  F   GF            P +L  S   +    +  
Sbjct:   107 SVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDS 166

Query:   166 LNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLY 225
             L S+L     V K +K         +   +   + I +  GV    I   V   P  F  
Sbjct:   167 LKSILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFS 226

Query:   226 KPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMF 285
             +  +    + RV   GFD     ++ A+      ++   E K KLF+  G+S+++ ++  
Sbjct:   227 RERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAI 286

Query:   286 RSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSK 345
                P   TVS+ KI   +E L+    +    IV    +   S+E  +KPR +V  +L SK
Sbjct:   287 MRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSK 346

Query:   346 NLLRRKT-GLATVCKLSKGKFLEKYVLPYQDELGDL 380
              L++++     T+ KL   +F++K+VL YQDE+  L
Sbjct:   347 GLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQL 382

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036868 AT1G61980 "AT1G61980" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 61/257 (23%), Positives = 118/257 (45%)

Query:    51 KTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAK 110
             K K     YL++     P+  +E+ S   S +D +N DSVL+ LR  GF+ + I  +V  
Sbjct:    49 KGKSFTVSYLVDSLGL-PKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTD 107

Query:   111 KPNILLINLHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLNSVL 170
              P +L+ +   +L PK++     G             P +L +         +  +   L
Sbjct:   108 YPQLLVADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETL 167

Query:   171 GSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKV 230
                +   K+ K+   F + +LE   I  + +L+  G+    +   + +       K EK 
Sbjct:   168 LDKSS--KSEKSCQPFPQGNLENK-IRNLSVLRELGMPHKLLFPLLISCDVPVFGK-EKF 223

Query:   231 RCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPP 290
                +++V E+GFD ++  ++ A+  +  ++ +  E K+  ++ LGF  + + ++F+  P 
Sbjct:   224 EESLKKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPN 283

Query:   291 AFTVSERKIRSVVETLL 307
               T SE+KI + +ET L
Sbjct:   284 FLTHSEKKILNTIETFL 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2036813 AT1G62010 "AT1G62010" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 59/251 (23%), Positives = 117/251 (46%)

Query:    57 ADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILL 116
             AD     + F   S  ++  L   L D  NSDSVL  LR  GF+ + I  ++     +L+
Sbjct:    40 ADVSPKGETFKSSSFLDSLRLATKLTDKGNSDSVLDLLRSYGFTDSQISSIIRSDSRVLI 99

Query:   117 INLHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLNSVLGSNAGV 176
              N   +L  K++     G             P +L +       R +  +  ++ ++   
Sbjct:   100 DNDATSLGSKLQFLQSRGASSSELTEVVSTVPKILGKREGKSLSRYYDFIKVIIEADKS- 158

Query:   177 CKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQR 236
              K  K +    + +  + ++    +L+  GV   +++  + +       K EK    +++
Sbjct:   159 SKYEKISHSLAQGNKIRNIL----VLRELGVPQKRLLLLLISKSQPVCGK-EKFDASLKK 213

Query:   237 VDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSE 296
             V E+GFD  +  ++ A+  +  M+ +  E K++++RS+GFS D++ +MF+  P + T SE
Sbjct:   214 VVEMGFDPTTSTFVHALHMLYQMSDKTIEEKIRVYRSVGFSVDDVWAMFKKWPRSLTHSE 273

Query:   297 RKIRSVVETLL 307
             +K+ + +ET L
Sbjct:   274 KKVANSIETFL 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018057 AT1G62120 "AT1G62120" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 58/249 (23%), Positives = 112/249 (44%)

Query:    59 YLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLIN 118
             YL++    + + A E+ S+  S  +  N DSVLS LR  GF+ + I  ++   P +L+++
Sbjct:    61 YLVDSLGLATKVA-ESISMKVSFDNKGNPDSVLSLLRSHGFTDSQISNIIRTFPRLLILD 119

Query:   119 LHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLNSVLGSNAGVCK 178
                +L PK++     G             P +L +       R +  +  ++ ++    K
Sbjct:   120 AEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKRKGKSLSRYYDFVKVIIEADKS-SK 178

Query:   179 AIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVD 238
               K          ++  I  + +L+  GV    +   + +       K EK +  +++  
Sbjct:   179 LEKLCHSLPEGSKQENKIRNLLVLREMGVPQRLLFSLLISDAGDVCGK-EKFKESLKKAV 237

Query:   239 EIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERK 298
             EIGFD  +  ++ A+  +  ++ +  E K    + LG + D++ +MF+  P   T SE+K
Sbjct:   238 EIGFDPTTATFVKALNVLYGLSDKGIENKFNACKRLGLAVDDVWAMFKKWPNILTKSEKK 297

Query:   299 IRSVVETLL 307
             I + VET L
Sbjct:   298 IENSVETFL 306

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 59/249 (23%), Positives = 112/249 (44%)

Query:    59 YLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLIN 118
             YL++    + + A E+ S   S +D  N DSVL+ L   GF+ + I  ++   P +L+ +
Sbjct:    57 YLVDSLGLTTKLA-ESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIAD 115

Query:   119 LHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLNSVLGSNAGVCK 178
                +L PK++     G             P +L +         +  +   L   +   K
Sbjct:   116 AEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEKSS--K 173

Query:   179 AIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVD 238
               K      + +LE   I  + +L+  G+    +   + +       K EK    +++V 
Sbjct:   174 NEKLCHSLPQGNLENK-IRNVSVLRELGMPHKLLFSLLISDSQPVCGK-EKFEETLKKVV 231

Query:   239 EIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERK 298
             E+GFD  +  ++ A++ +  M ++  E K+ L++SLGF   ++ S F+  P +  VSE+K
Sbjct:   232 EMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKK 291

Query:   299 IRSVVETLL 307
             +   +ET L
Sbjct:   292 MLDSIETFL 300

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 57/248 (22%), Positives = 110/248 (44%)

Query:    59 YLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLIN 118
             YL+     + + A E  S   + +D  N DSVL+ LR +GF  + I +++   P +L+ +
Sbjct:    57 YLVESLGLTKKLA-ETISKKVTFEDKVNPDSVLNLLRSNGFKDSQISRIIRAYPRLLVTD 115

Query:   119 LHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLNSVLGSNAGVCK 178
                +L+PK++     G             P +L +  E      +  +  ++     +C 
Sbjct:   116 AEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVSLYYDFVKDIMQDGKSLCI 175

Query:   179 AIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVD 238
             +            +   I  I +L+  GV    +   + +       K EK    +++V 
Sbjct:   176 SCP-------EGKKGNRIRNISVLRELGVPQKLLFSLLISRYQPVCGK-EKFEESLKKVV 227

Query:   239 EIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERK 298
             ++GFD     ++ A+  +  M+++  E K+ +++ LGFSE  I ++F+  P     SE+K
Sbjct:   228 DMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYFLKFSEKK 287

Query:   299 IRSVVETL 306
             I  + ETL
Sbjct:   288 IILMFETL 295

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036878 AT1G61990 "AT1G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 6.6e-13, P = 6.6e-13
 Identities = 64/257 (24%), Positives = 116/257 (45%)

Query:    51 KTKIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAK 110
             K K     YL++    S + A E+ S   S +D  N DSVLS  R  GF+ + I  ++  
Sbjct:    49 KGKNFTVSYLVDSLGLSKKLA-ESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITD 107

Query:   111 KPNILLINLHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLNSVL 170
              P +L+ +    L  K++I    G             P +L +       +S  V    +
Sbjct:   108 YPLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGK-------KSITVYYDAV 160

Query:   171 GSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKV 230
                  +  A  ++ + L +  +   I  +  L+  G+ S  ++  + +       K E  
Sbjct:   161 KD---IIVADTSSSYELPQGSQGNKIRNVSALRELGMPSRLLLPLLVSKSQPVCGK-ENF 216

Query:   231 RCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPP 290
                +++V E+GFD  +  ++ A+R +  M+++  E K+ +FRSLGF+ D++  +F+  P 
Sbjct:   217 DASLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPS 276

Query:   291 AFTVSERKIRSVVETLL 307
                VS++KI    ET L
Sbjct:   277 VLKVSKKKILKSAETFL 293

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:1006230704 AT1G62085 "AT1G62085" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 57/248 (22%), Positives = 108/248 (43%)

Query:    59 YLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLIN 118
             YL++     P+  +E+ S   S +D  N DSVLS LR  GF+ + I  ++   P +L+ +
Sbjct:    60 YLVDSLGL-PKKVAESISKKVSFEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQLLVAD 118

Query:   119 LHNTLKPKIKIFHEFGFXXXXXXXXXXXXPWLLHRSAENQFQRSFLVLNSVLGSNAGVCK 178
                ++ PK++     G             P +L +  +      +  +  ++ ++    K
Sbjct:   119 AEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADKS-SK 177

Query:   179 AIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVD 238
               K          ++  I  + +L+  GV    +   + +       K E     +++V 
Sbjct:   178 FEKLCHSLPEGSKQENKIRNVLVLRELGVPQRLLFPLLISDHQPVCGK-ENFEESLKKVV 236

Query:   239 EIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERK 298
             E+GFD  +  ++ A+R +     +  E K+ + +SLGFS  ++ +MF+  P     SE K
Sbjct:   237 EMGFDPTTSKFVKALRVVYRFRDKTIEAKVNVCKSLGFSVGDVWAMFKKCPSFLNFSENK 296

Query:   299 IRSVVETL 306
             I    ETL
Sbjct:   297 IVQTWETL 304

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam02536	345	pfam02536, mTERF, mTERF	7e-16
pfam02536	345	pfam02536, mTERF, mTERF	1e-15
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	0.002

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 77.9 bits (192), Expect = 7e-16
 Identities = 54/279 (19%), Positives = 107/279 (38%), Gaps = 4/279 (1%)

Query: 89  SVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDP 148
           SV  FL++   +       + K P  L    +      + +  E G     +  ++ S P
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRP 130

Query: 149 WLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVS 208
             +    +  F+ S   +  +        + I      L    +KT+ P ++ LK+ G S
Sbjct: 131 RPV--CGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFS 188

Query: 209 SSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKL 268
              +   +   P       +K     Q + +          +  +    S +++K   K+
Sbjct: 189 VEDVWAILKKCPELLGSSEKKKLQT-QEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKI 247

Query: 269 KLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSI 328
           +    LGFS + I  M +  P    +S  K++   E L++  +  +  +V    +F  S+
Sbjct: 248 EFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSL 307

Query: 329 ESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLE 367
           E  +KPR  V   L SK      + L+++ K +  +FL+
Sbjct: 308 EKRIKPRCNVVKALMSKGKSILPS-LSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 49/249 (19%), Positives = 106/249 (42%), Gaps = 3/249 (1%)

Query: 91  LSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWL 150
           LS LR  GF+ + I  ++   P +L  +    L+PK++     G S S++  I+S+ P +
Sbjct: 1   LSLLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKI 60

Query: 151 LHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSS 210
           L +         +  L  ++ ++      ++     L +      I  + +L+  GV   
Sbjct: 61  LGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPK 120

Query: 211 QIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRT--MSSMTKEKWELKL 268
            +   + + P     K E     +++V E+GFD  +   + A R   +   + +  +  +
Sbjct: 121 LLFSLLISRPRPVCGK-EVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNV 179

Query: 269 KLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSI 328
           +  +SLGFS +++ ++ +  P     SE+K     E L     ++  S++     F+   
Sbjct: 180 EFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYS 239

Query: 329 ESNLKPRMR 337
           E  +  ++ 
Sbjct: 240 EQKILNKIE 248

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 55/321 (17%)

Query: 77  LNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFS 136
           L F L+ T  S SV ++L   G +   I  M+ + P IL + + N +KPK+      G  
Sbjct: 188 LGFKLEGTM-STSV-AYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLP 245

Query: 137 SSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLI 196
              +  I+   P                                    + L  DLE+T+ 
Sbjct: 246 RLAVARILEKRP------------------------------------YILGFDLEETVK 269

Query: 197 PTIDILKNCGVSSSQIVKYVYTYPTFFLY----KPEKVRCFVQRVDEIGFDRNSKMY--L 250
           P ++ L   GV    +   +  YP         K  + + ++    +I  +   ++   L
Sbjct: 270 PNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKL 329

Query: 251 PAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR 310
           P I +++     K    ++  R  GFS  ++  M    P    ++   ++  +E   +  
Sbjct: 330 PQIVSLNRNVALK---HVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEM 386

Query: 311 DVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYV 370
              +  +V   + F   +ES +KPR   Y+ +  K +   K  LA     S  KF ++  
Sbjct: 387 KRPLKELVEFPAYFTYGLESRIKPR---YERVAKKGI---KCSLAWFLNCSDDKFEQRMS 440

Query: 371 LPY--QDELGDLSFLTMPQSQ 389
             +   +E+  L  +      
Sbjct: 441 GDFIEGEEMEPLFSMGGKLEM 461

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
KOG1267	413	consensus Mitochondrial transcription termination	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.95
KOG1267	413	consensus Mitochondrial transcription termination	99.64
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.1
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.98
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	91.25
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	89.92
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	88.66

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.1e-58  Score=470.76  Aligned_cols=325  Identities=19%  Similarity=0.290  Sum_probs=226.1

Q ss_pred             HHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCC
Q 048516           57 ADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFS  136 (389)
Q Consensus        57 ~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s  136 (389)
                      ++|| .+.|++.++..+ ....+...-..+..++++||+++|++.++|.++|.++|++|.++++++|.|+++||+++|++
T Consensus        96 l~~L-~s~G~~~~~i~~-~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs  173 (487)
T PLN03196         96 VEFL-HKLGLTIEDINE-YPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVK  173 (487)
T ss_pred             HHHH-HHcCCChHHhcc-CcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCC
Confidence            3455 356666655541 11122222223455566666666666666666666666666666655666666666666666


Q ss_pred             hhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCchhhhhhc
Q 048516          137 SSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYV  216 (389)
Q Consensus       137 ~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll  216 (389)
                      +++|++++.++|++|+++++++|.|+++||+++|++.+++.+++.++|++|+++++++++|+++||+++|++.++|.+++
T Consensus       174 ~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il  253 (487)
T PLN03196        174 RQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARIL  253 (487)
T ss_pred             HHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHH
Confidence            66666666666666666655556666666665555555556666666666665555555666666655666555555555


Q ss_pred             ccCcEeeeecch-hHHHHHHHHHHhCCCC-------------------------------------Ccc-cHHHHHHHHh
Q 048516          217 YTYPTFFLYKPE-KVRCFVQRVDEIGFDR-------------------------------------NSK-MYLPAIRTMS  257 (389)
Q Consensus       217 ~~~P~il~~s~~-~~~~~v~~l~~lG~~~-------------------------------------~~~-~f~~a~~~~~  257 (389)
                      .++|++|+++.+ +++++++++.++|+++                                     ++. .++.+.+.+.
T Consensus       254 ~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il  333 (487)
T PLN03196        254 EKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIV  333 (487)
T ss_pred             HhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhh
Confidence            556666655554 5555555555555554                                     332 1233344567


Q ss_pred             cCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCceeecCCCCccchHHH
Q 048516          258 SMTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMR  337 (389)
Q Consensus       258 ~~s~~~~~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL~~Sle~ri~PR~~  337 (389)
                      .+++++|++|++||+++||+.+||..||+++|+||++|+++|+++++||+++||++.++|+++|++|+||||+||+|||.
T Consensus       334 ~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~  413 (487)
T PLN03196        334 SLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYE  413 (487)
T ss_pred             cccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHcCcccCCCCchhhhcccHhhHHHhhccCCCC-cccccc-----ccCCCCCC
Q 048516          338 VYDMLKSKNLLRRKTGLATVCKLSKGKFLEKYVLPYQD-ELGDLS-----FLTMPQSQ  389 (389)
Q Consensus       338 vl~~L~~kGl~~~~~~l~~~l~~se~~F~~k~v~~~~e-~~p~l~-----~~~~~~~~  389 (389)
                      +   |+++|+   ++++.+++.+||++|++|||.+|.| +..+-.     .++|||++
T Consensus       414 ~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~~~~~~~~~~~~~~~~~~~~  465 (487)
T PLN03196        414 R---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGSE  465 (487)
T ss_pred             H---HHHcCC---CCCHHHHhccCHHHHHHHHhhhcccccccCCCcccCCcccCCCCc
Confidence            6   569999   6899999999999999999999987 333332     26777763

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=7.8e-51  Score=400.03  Aligned_cols=303  Identities=24%  Similarity=0.394  Sum_probs=205.1

Q ss_pred             hccCCCHHHHHHhhcc--c-cCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChh
Q 048516           62 NRQHFSPESASEASSL--N-FSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSS  138 (389)
Q Consensus        62 ~s~Gls~~~a~~~s~~--~-~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~  138 (389)
                      +++||+..+..++.++  . +..+...+..++++||.+.|++.+||.+++.++|.+|..+.++++.|.++||++.|++++
T Consensus         5 ~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~   84 (345)
T PF02536_consen    5 KNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDE   84 (345)
T ss_dssp             HHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HH
T ss_pred             HHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHH
Confidence            5666766666666442  1 222233446667777777777777777777777777777766667777777777777777


Q ss_pred             hhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCchhhhhhccc
Q 048516          139 DIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYT  218 (389)
Q Consensus       139 ~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll~~  218 (389)
                      |+++++.++|++|..+.++++.|+++||+++|++.+.+.+.+..+|.++...  +.+++.++++.++|++++++.+++..
T Consensus        85 d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~  162 (345)
T PF02536_consen   85 DIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAK  162 (345)
T ss_dssp             HHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHH
T ss_pred             HHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccc
Confidence            7777777777777666666677777777777777665666666666655444  34677777777777777777777777


Q ss_pred             CcEeeeec-chhHHHHHHHHHHhCCCCCcc--cHHHHH--------------------------------HHHhcCCHHH
Q 048516          219 YPTFFLYK-PEKVRCFVQRVDEIGFDRNSK--MYLPAI--------------------------------RTMSSMTKEK  263 (389)
Q Consensus       219 ~P~il~~s-~~~~~~~v~~l~~lG~~~~~~--~f~~a~--------------------------------~~~~~~s~~~  263 (389)
                      +|+++... .+.+++++++++++|++.++.  ++.++|                                +.++..+.++
T Consensus       163 ~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~  242 (345)
T PF02536_consen  163 NPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEK  242 (345)
T ss_dssp             HHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHH
T ss_pred             cchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHh
Confidence            77544444 456788888888888776431  222222                                2233345678


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCceeecCCCCccchHHHHHHHHH
Q 048516          264 WELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLK  343 (389)
Q Consensus       264 ~~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL~~Sle~ri~PR~~vl~~L~  343 (389)
                      +++++++|+++|||++||..|+.++|++|++|+++++++++||.++||++.++|+++|++|+||+|+||+|||+++++|+
T Consensus       243 l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~  322 (345)
T PF02536_consen  243 LKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLK  322 (345)
T ss_dssp             HHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcccCCCCchhhhcccHhhHHH
Q 048516          344 SKNLLRRKTGLATVCKLSKGKFLE  367 (389)
Q Consensus       344 ~kGl~~~~~~l~~~l~~se~~F~~  367 (389)
                      ++|+ ..++++.+++.+||++|++
T Consensus       323 ~~g~-~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  323 SKGL-IINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             -TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred             HCcC-CCCCCHHHHhhccHHHhcC
Confidence            9997 6689999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=4.6e-44  Score=363.86  Aligned_cols=294  Identities=14%  Similarity=0.229  Sum_probs=242.0

Q ss_pred             hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCC
Q 048516           56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGF  135 (389)
Q Consensus        56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~  135 (389)
                      +++||. +.|+++..+.+.-.    -.+-+...++++||+++||+++||.    ++|++|.+++++++.|+++||+++|+
T Consensus        66 ~~~~L~-~lgi~~~~l~~~~~----p~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~  136 (487)
T PLN03196         66 VLDFLR-GIGIDPDELDGLEL----PSTVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGV  136 (487)
T ss_pred             HHHHHH-HcCCCchhhhccCC----CccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCC
Confidence            789995 79999988865321    1234567788999999999999997    79999999999999999999999999


Q ss_pred             ChhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCchhhhhh
Q 048516          136 SSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKY  215 (389)
Q Consensus       136 s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I~~l  215 (389)
                      ++++|+++|.++|.+|..|++++|.|+++||+++|++++++.+++.++|++|++++++++.|+++||+++|++.++|.++
T Consensus       137 s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~i  216 (487)
T PLN03196        137 TRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPM  216 (487)
T ss_pred             CHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcEeeeecch-hHHHHHHHHHHhCCCCCc--ccHHHHHHHHhcC---------------------------------
Q 048516          216 VYTYPTFFLYKPE-KVRCFVQRVDEIGFDRNS--KMYLPAIRTMSSM---------------------------------  259 (389)
Q Consensus       216 l~~~P~il~~s~~-~~~~~v~~l~~lG~~~~~--~~f~~a~~~~~~~---------------------------------  259 (389)
                      +.++|++|+++.+ +++.+++++.++|++.+.  ..+.++|..+...                                 
T Consensus       217 l~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL  296 (487)
T PLN03196        217 LTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDIL  296 (487)
T ss_pred             HHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCcee
Confidence            9999999999987 689999999999998764  1222222222211                                 


Q ss_pred             ---CHHHHHHHHHHHH-HcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhH----hhCCceeecCCCCc
Q 048516          260 ---TKEKWELKLKLFR-SLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSI----VNNASLFLCSIESN  331 (389)
Q Consensus       260 ---s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i----~~~P~lL~~Sle~r  331 (389)
                         .+++++++++++. ++||+.+++..++.++|+++++|+++++++++||.+ +||+.++|    .++|++|+||.+ .
T Consensus       297 ~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~-~  374 (487)
T PLN03196        297 GLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE-I  374 (487)
T ss_pred             EecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH-H
Confidence               2345666666664 577777777778888888888888888888888886 88888887    588888888884 7


Q ss_pred             cchHHHHHHHHHHcCcccC-CCCchhhhcccH
Q 048516          332 LKPRMRVYDMLKSKNLLRR-KTGLATVCKLSK  362 (389)
Q Consensus       332 i~PR~~vl~~L~~kGl~~~-~~~l~~~l~~se  362 (389)
                      |+|++.++.  ...|+--. -..+..++.+|=
T Consensus       375 l~~k~dFlv--neMg~~~~~Iv~fP~~LsySL  404 (487)
T PLN03196        375 MKPSLEFFK--KEMKRPLKELVEFPAYFTYGL  404 (487)
T ss_pred             HHHHHHHHH--HHhCCCHHHHHhChHHhccCh
Confidence            888886654  23354211 234566677763

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=100.00  E-value=6.3e-33  Score=279.06  Aligned_cols=278  Identities=25%  Similarity=0.384  Sum_probs=242.9

Q ss_pred             CcchHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHH
Q 048516           53 KIDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHE  132 (389)
Q Consensus        53 ~f~~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~s  132 (389)
                      +| .++|+++++|++...|..+++ .+......+|++++++|+++|+++++|.+++..+|+++..+.++.+.|++.+|++
T Consensus        59 ~f-~~s~~~~s~~~~~~~~~~~~~-~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~  136 (413)
T KOG1267|consen   59 NF-ESSYLVDSLGLSIKLARKLSR-EVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDS  136 (413)
T ss_pred             Cc-ceeeeccccccchhhHHHHHH-HHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhc
Confidence            39 999999999999999999888 7888889999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHhh--CChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCch
Q 048516          133 FGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVL--GSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSS  210 (389)
Q Consensus       133 lG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g--~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~  210 (389)
                      .|++.++++++++..|.+|..+.+.++.+.++|+++++  .....+.+.+...|.....  +..+. ++++++++|+.++
T Consensus       137 ~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~~lg~~~~  213 (413)
T KOG1267|consen  137 LGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRRELGVKPR  213 (413)
T ss_pred             cCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhcccccccccc--ccccc-cchhhHHhCCCHH
Confidence            99999999999999999999998889999999999986  4555555555444422222  12245 9999999999999


Q ss_pred             hhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC
Q 048516          211 QIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLGFSEDNILSMFRSMPP  290 (389)
Q Consensus       211 ~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~~~G~s~~~v~~~~~~~P~  290 (389)
                      .+..++..+|+.+.... .+...+.++.++||+|.+.+|++|+..+...+++++++|+++|++.||+++||+.|+.++|+
T Consensus       214 ~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~  292 (413)
T KOG1267|consen  214 LLKSLLESQPRPVLLYL-KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQ  292 (413)
T ss_pred             HHHHHHhcCccceeeeh-hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCch
Confidence            99999999999988754 78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCHHh----------------------------HHHHHHHHhhccCCChhhHh----hCCceeecCCCCccchHHH
Q 048516          291 AFTVSERK----------------------------IRSVVETLLRRRDVDISSIV----NNASLFLCSIESNLKPRMR  337 (389)
Q Consensus       291 iL~~S~~~----------------------------l~~k~~fL~~~mg~~~~~i~----~~P~lL~~Sle~ri~PR~~  337 (389)
                      +|++|+++                            ++++++|+.. .|++..+++    ++|++++||+|+-+++.+.
T Consensus       293 ~l~~s~~~~~~~~~~~~~~~~~~~k~p~~l~~s~~~l~~~ie~l~~-~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~  370 (413)
T KOG1267|consen  293 ILGYSVKKNLKTTEYLLKNPKHILKFPQLLRSSEDKLKPRIEFLLS-LGFSDVQILEMVKRFPQYLSFSLEKILKRKYE  370 (413)
T ss_pred             heEeehhhhhHHHHHHHhcchhhhhhhhhhhccchhhhhhHHHHHH-cCCcHHHHHHHHhhccHHhhhhHHhhhhhhHH
Confidence            99999874                            7788888887 687766653    4688888888873333333

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.95  E-value=1.9e-29  Score=248.14  Aligned_cols=248  Identities=21%  Similarity=0.343  Sum_probs=196.0

Q ss_pred             hHHHhhhccCCCHHHHHHhhc---cccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHH
Q 048516           56 LADYLINRQHFSPESASEASS---LNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHE  132 (389)
Q Consensus        56 ~~~yLi~s~Gls~~~a~~~s~---~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~s  132 (389)
                      .++||. +.|+|..+..++..   ...+....++..++++||+++|++++|+.+++.++|++|..+.+.++.|++++|++
T Consensus        36 k~~fl~-s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~  114 (345)
T PF02536_consen   36 KLEFLR-SLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRS  114 (345)
T ss_dssp             HHHHHH-HTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHH
T ss_pred             HHHHHH-HCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhh
Confidence            778995 89999988888733   12232235778999999999999999999999999999999888789999999999


Q ss_pred             cCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCchhh
Q 048516          133 FGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQI  212 (389)
Q Consensus       133 lG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I  212 (389)
                      +|++.+++.+++..+|.++...  +.+.+.++|+.++|++++++.+++.++|+++..+.+++++|+++||+++|++.+++
T Consensus       115 lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i  192 (345)
T PF02536_consen  115 LGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDI  192 (345)
T ss_dssp             TT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHH
T ss_pred             cCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhh
Confidence            9999998888888888776665  58999999999999999999999999998888888888999999999999999999


Q ss_pred             hhhcccCcEeeeecchh---------------------------------HHHHHHHHHHhCCCCCcc-cHHHHHHHHhc
Q 048516          213 VKYVYTYPTFFLYKPEK---------------------------------VRCFVQRVDEIGFDRNSK-MYLPAIRTMSS  258 (389)
Q Consensus       213 ~~ll~~~P~il~~s~~~---------------------------------~~~~v~~l~~lG~~~~~~-~f~~a~~~~~~  258 (389)
                      .+++.++|+++..+.++                                 +.++++++.++||+.++. .++..-+.++.
T Consensus       193 ~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~  272 (345)
T PF02536_consen  193 GKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILS  272 (345)
T ss_dssp             HHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGG
T ss_pred             hHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhh
Confidence            99999999888887764                                 888999999999998874 45555556677


Q ss_pred             CCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCCCccccCHH-hHHHH---HHHHhhccC
Q 048516          259 MTKEKWELKLKLFR-SLGFSEDNILSMFRSMPPAFTVSER-KIRSV---VETLLRRRD  311 (389)
Q Consensus       259 ~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P~iL~~S~~-~l~~k---~~fL~~~mg  311 (389)
                      .+.+++++|++|+. ++|++.++|    .++|++|++|.| +|+++   ++++.+ .|
T Consensus       273 ~s~e~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe~ri~PR~~~~~~l~~-~g  325 (345)
T PF02536_consen  273 YSIEKLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLEKRIKPRYEVLKVLKS-KG  325 (345)
T ss_dssp             S-HHHHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HHHHHHHHHHHHHTT---TT
T ss_pred             cchhhhhHHHHHHHHHhCcCHHHH----hhCCceeEechhhhhhhHHHHHHHHHH-Cc
Confidence            88888999999998 599999997    689999999965 69999   777776 46

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.64  E-value=7.2e-16  Score=155.40  Aligned_cols=280  Identities=21%  Similarity=0.288  Sum_probs=225.2

Q ss_pred             hHHHhhhccCCCHHHHHHhhcc--c-cCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHH
Q 048516           56 LADYLINRQHFSPESASEASSL--N-FSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHE  132 (389)
Q Consensus        56 ~~~yLi~s~Gls~~~a~~~s~~--~-~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~s  132 (389)
                      +.+.| .+.|++..+..++...  . ...+......+.+.+|++.|++.+.+.++++..|.+|...-+.++.+.++|+.+
T Consensus        94 ~~~~l-~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~  172 (413)
T KOG1267|consen   94 VLSSL-RSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKS  172 (413)
T ss_pred             HHHHH-HhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHHhhc
Confidence            55655 6899999988876331  2 222333334566678899999999999999999999987767789999999998


Q ss_pred             cC--CChhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHH--------------------------------H
Q 048516          133 FG--FSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVC--------------------------------K  178 (389)
Q Consensus       133 lG--~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~--------------------------------~  178 (389)
                      .+  ...+.+.++....|......  +.+. ++++++++|...+.+.                                +
T Consensus       173 ~~~~~~~s~~~~~~~~~~~~~~~~--~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~p~~~  249 (413)
T KOG1267|consen  173 IPPELLSSVVERLLTPVPSFLLNE--NSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYLKLKARLPFLLTLGFDPKTR  249 (413)
T ss_pred             cchhhhhhHHHHhccccccccccc--cccc-cchhhHHhCCCHHHHHHHHhcCccceeeehhhhhhhhhHHHhccCCchh
Confidence            74  77777777777776433321  1222 5666666665555444                                3


Q ss_pred             HHHhcCcccccCchhhhhhHHHHHHHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCcccHHHHHHHHhc
Q 048516          179 AIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSS  258 (389)
Q Consensus       179 ~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~f~~a~~~~~~  258 (389)
                      .+.+.|.+++++.++++++++++|+++|++.++|..++.++|++++++.+++...++++.+.  .++    +...+.+..
T Consensus       250 ~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~--~~~----~~k~p~~l~  323 (413)
T KOG1267|consen  250 EFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN--PKH----ILKFPQLLR  323 (413)
T ss_pred             HHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc--chh----hhhhhhhhh
Confidence            34455666666789999999999999999999999999999999999999888888888766  222    334444458


Q ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCccccCHH-hHHHHHHHHhhccCCChhhHhhCCceeecCCCCccchHHH
Q 048516          259 MTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSER-KIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMR  337 (389)
Q Consensus       259 ~s~~~~~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~-~l~~k~~fL~~~mg~~~~~i~~~P~lL~~Sle~ri~PR~~  337 (389)
                      .++.++.++++++...|++.+++..+++++|+++.+|.+ .++.+.+|+.+.|+++.+.++.+|.+++|++|+|+.||+.
T Consensus       324 ~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~  403 (413)
T KOG1267|consen  324 SSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFN  403 (413)
T ss_pred             ccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHH
Confidence            899999999999999999999999999999999999988 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 048516          338 VYDMLKSK  345 (389)
Q Consensus       338 vl~~L~~k  345 (389)
                      +.+.+..+
T Consensus       404 ~~~~~~~~  411 (413)
T KOG1267|consen  404 VIKKLGVK  411 (413)
T ss_pred             HHHHHhcc
Confidence            98876554

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.10  E-value=0.0004  Score=42.53  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=26.4

Q ss_pred             HHHHcCCCccccCHHhHHHHHHHHhhccCCC
Q 048516          283 SMFRSMPPAFTVSERKIRSVVETLLRRRDVD  313 (389)
Q Consensus       283 ~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~  313 (389)
                      .++.++|.+++.|+++|+++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4688999999999889999999999 58874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.98  E-value=0.00062  Score=41.63  Aligned_cols=28  Identities=32%  Similarity=0.449  Sum_probs=14.0

Q ss_pred             HHHhcCcccccCchhhhhhHHHHHHHcCC
Q 048516          179 AIKATGWFLRRDLEKTLIPTIDILKNCGV  207 (389)
Q Consensus       179 ~l~~~P~lL~~sle~~l~p~v~~L~~lGv  207 (389)
                      ++.++|++|+.+ +++++++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            344555555555 3335555555555554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=91.25  E-value=1.1  Score=44.07  Aligned_cols=225  Identities=16%  Similarity=0.140  Sum_probs=119.8

Q ss_pred             HhCCCCHHHHHHHHhcCCccccccc-------ccchhhHHHHHHH--cCCChhhhhhHhhcCcccccccchhhh-HHHHH
Q 048516           95 RESGFSSTHIEKMVAKKPNILLINL-------HNTLKPKIKIFHE--FGFSSSDIVDIISSDPWLLHRSAENQF-QRSFL  164 (389)
Q Consensus        95 ~~lGls~~~i~~iv~~~P~lL~~~~-------~~~L~pkl~fL~s--lG~s~~~i~~iv~~~P~iL~~s~e~~L-~p~~~  164 (389)
                      +.+|+..-.+.+.++++|.++..-.       --.+.|...-|.+  ..+-.+.-..++.+--.+|-.|.++.| ..++.
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            5799977889999999999886422       1134455444432  222111112333333345555555442 33555


Q ss_pred             HHH-HhhCChhHHHHHHHhcCcccccCc---hhhhhhHHHHHHHcCCCchhhhhh-------------c----ccCcEee
Q 048516          165 VLN-SVLGSNAGVCKAIKATGWFLRRDL---EKTLIPTIDILKNCGVSSSQIVKY-------------V----YTYPTFF  223 (389)
Q Consensus       165 fL~-~~g~s~~~v~~~l~~~P~lL~~sl---e~~l~p~v~~L~~lGv~~~~I~~l-------------l----~~~P~il  223 (389)
                      .++ ++|+.++-...++.++|..+...-   ....-.-+.|=.++.++.-+....             -    .++|.-+
T Consensus       125 ~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~  204 (335)
T PF11955_consen  125 HLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGF  204 (335)
T ss_pred             HHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCc
Confidence            555 688888887888889998886532   001111111111233333221111             1    1222222


Q ss_pred             eecchhHHHHHHHHHHhC----------CCCCcccH-HHHH---HHHhcCCHH--HHHHHHHHHH-HcCCCHHHHHHHHH
Q 048516          224 LYKPEKVRCFVQRVDEIG----------FDRNSKMY-LPAI---RTMSSMTKE--KWELKLKLFR-SLGFSEDNILSMFR  286 (389)
Q Consensus       224 ~~s~~~~~~~v~~l~~lG----------~~~~~~~f-~~a~---~~~~~~s~~--~~~~kv~~l~-~~G~s~~~v~~~~~  286 (389)
                      .. ..++.+.++.++++-          +++++..+ .+|.   +-+++++-+  ....++..|+ ++|++ +.+..++.
T Consensus       205 ~l-~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~  282 (335)
T PF11955_consen  205 RL-KKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLL  282 (335)
T ss_pred             cc-cHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHH
Confidence            21 135667777776653          34444333 2333   333443333  3467777788 69998 67789999


Q ss_pred             cCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCce
Q 048516          287 SMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASL  323 (389)
Q Consensus       287 ~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~l  323 (389)
                      +||.|+.+|.. -+.-.=||.+...-+ .-|-++|.+
T Consensus       283 rHPgIFYvS~k-g~~~TVfLrEAY~~~-~Liek~Pl~  317 (335)
T PF11955_consen  283 RHPGIFYVSLK-GKRHTVFLREAYDGG-ELIEKHPLV  317 (335)
T ss_pred             hCCCeEEEecc-CCceEEEEeeccCCC-CCCCCCchH
Confidence            99999999964 333344666633222 335567766

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=89.92  E-value=0.39  Score=46.29  Aligned_cols=111  Identities=13%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCccccc-----c---------ccc
Q 048516           56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLI-----N---------LHN  121 (389)
Q Consensus        56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~-----~---------~~~  121 (389)
                      +|.-++ ..|..+++...|.|     ..-.|||..+.||-+ |+....-.......|.....     .         ++.
T Consensus       138 ~V~~Im-~MGy~re~V~~AlR-----AafNNPeRAVEYLl~-GIP~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~  210 (340)
T KOG0011|consen  138 TVQQIM-EMGYDREEVERALR-----AAFNNPERAVEYLLN-GIPEDAEVPEPEKSTAAAAELPANAQPLDLFPQGAVEA  210 (340)
T ss_pred             HHHHHH-HhCccHHHHHHHHH-----HhhCChhhhHHHHhc-CCcccccCCcccCCcccCCCCCCCCChhhcCCccchhh
Confidence            455665 68999999888876     223689999999864 66653111111111111111     1         122


Q ss_pred             chhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCc
Q 048516          122 TLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGW  185 (389)
Q Consensus       122 ~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~  185 (389)
                      .-.+-++||++.- .-.++..+|..||.+|.           ..|+.+|..+-.+.+.|..|+.
T Consensus       211 ~~~~~l~fLr~~~-qf~~lR~~iqqNP~ll~-----------~~Lqqlg~~nP~L~q~Iq~nqe  262 (340)
T KOG0011|consen  211 SGGDPLEFLRNQP-QFQQLRQMIQQNPELLH-----------PLLQQLGKQNPQLLQLIQENQE  262 (340)
T ss_pred             hcCCchhhhhccH-HHHHHHHHHhhCHHHHH-----------HHHHHHhhhCHHHHHHHHHHHH
Confidence            2223477777431 12567888999998765           3456778777777777777654

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=88.66  E-value=1.3  Score=39.24  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=18.8

Q ss_pred             hHHHHHHHcCCChhhhhhHhhcCc
Q 048516          125 PKIKIFHEFGFSSSDIVDIISSDP  148 (389)
Q Consensus       125 pkl~fL~slG~s~~~i~~iv~~~P  148 (389)
                      -.+..|++.|++-++|..++....
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~   72 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPG   72 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCC
Confidence            457788899999999988887543

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-45
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  157 bits (398), Expect = 1e-45
 Identities = 41/300 (13%), Positives = 86/300 (28%), Gaps = 44/300 (14%)

Query: 83  DTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVD 142
           D  +    L  L   G   + IEK       +L ++    +K  +    + G   + +  
Sbjct: 1   DYVDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGA 60

Query: 143 IISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDIL 202
            ++ +  +     EN                                     L   +  L
Sbjct: 61  FLTKNHAIFSEDLEN-------------------------------------LKTRVAYL 83

Query: 203 KNCGVSSSQIVKYVYTYPTFFLYKPEKVR---CFVQRVDEIGFDRNSKMYLPAIRTMSSM 259
            +   S + + + V   P    +  E++     F Q+  E+   +   + +   R ++  
Sbjct: 84  HSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGS 143

Query: 260 TKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVN 319
            +   E        LGF  + I  M   +P   T ++ K+    + +     +    IV 
Sbjct: 144 LEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVK 203

Query: 320 NASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTG---LATVCKLSKGKFLEKYVLPYQDE 376
              +F   +   +K R      L        K     L  +  +    F E+       +
Sbjct: 204 FPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD 262

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  116 bits (291), Expect = 1e-29
 Identities = 52/303 (17%), Positives = 114/303 (37%), Gaps = 22/303 (7%)

Query: 81  LKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDI 140
            +   N   +  FL   G S   I  ++++ P  +     N L  +  ++ +   S  +I
Sbjct: 45  HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPEN-LSKRWDLWRKIVTSDLEI 103

Query: 141 VDIISSDPWLLHRSAENQFQRSFL-VLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTI 199
           V+I+   P    RS  N    + +  L SV  +   +C+ +          L+      +
Sbjct: 104 VNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMV 162

Query: 200 DILKNCGVSSSQ------IVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKM----- 248
           + L+  G+S         + K ++  P   +   ++V+  ++ +       + ++     
Sbjct: 163 EFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLIC 222

Query: 249 -YLPAIRTMSS-MTKEKWELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETL 306
                I  +S+   +  +    +   SLG +E+ +     S P    ++E+K    ++  
Sbjct: 223 GPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKID-C 281

Query: 307 LRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLATVCKLSKGKFL 366
           L   ++ IS I+ N  +   SI   LK R++    L +         +  +   SK ++ 
Sbjct: 282 LMEENISISQIIENPRVLDSSIS-TLKSRIKE---LVNAGCNLSTLNITLLS-WSKKRYE 336

Query: 367 EKY 369
            K 
Sbjct: 337 AKL 339

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 53/311 (17%), Positives = 96/311 (30%), Gaps = 77/311 (24%)

Query: 110 KKPNILLINLHNTLKPKIKIFHEFGFSSSDI-VDIISSDPWLLHRSAENQFQRSFLVLNS 168
             P  +L  L   L      +      SS+I + I S    L        ++   LVL +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 169 VLGSNAGVCKAIKATGWFLRRDLE-KTLIPT-----IDILKNCGVSSSQIVKYVYTYPTF 222
           V   NA    A      F   +L  K L+ T      D L     +   +  +  T    
Sbjct: 253 V--QNAKAWNA------F---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---- 297

Query: 223 FLYKPEKVRCFVQRVDEIGFDRNSKMYLP---------AIRTMSSMTKE---KWELKLKL 270
            L   E     ++ +D    D      LP          +  ++   ++    W+     
Sbjct: 298 -LTPDEVKSLLLKYLDCRPQD------LPREVLTTNPRRLSIIAESIRDGLATWD----N 346

Query: 271 FRSLGFSE-DNILSMF-RSMPPAFTVSERKIRSVVETL-LRRRDVDISSIVNNASLFLCS 327
           ++ +   +   I+      + PA      + R + + L +      I +I+      L  
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPA------EYRKMFDRLSVFPPSAHIPTIL------LSL 394

Query: 328 IESNLKPR--MRVYDMLKSKNLLRR--KTG--------LATVCKLSK-----GKFLEKYV 370
           I  ++     M V + L   +L+ +  K          L    KL          ++ Y 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 371 LPYQDELGDLS 381
           +P   +  DL 
Sbjct: 455 IPKTFDSDDLI 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 69/366 (18%), Positives = 113/366 (30%), Gaps = 111/366 (30%)

Query: 6   CKTLI---DSLHFNFNFNNSAHIHKSPFLSSISLLFFSSSSSSIPKKEKTKIDLADYLIN 62
           CK L+        +F    SA       L   S+        S+         L  YL  
Sbjct: 266 CKILLTTRFKQVTDFL---SAATTTHISLDHHSMTLTPDEVKSL---------LLKYLDC 313

Query: 63  RQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSST-----HIEKMVAKKPNILLI 117
           R    P      +    S+        +   +R+    +T     H+     K   I+  
Sbjct: 314 RPQDLPREVLTTNPRRLSI--------IAESIRD--GLATWDNWKHVNCD--KLTTIIES 361

Query: 118 NLHNTLKPKI--KIFHEFG-F-SSSDI---------VDIISSDPWL----LHRS--AENQ 158
           +L N L+P    K+F     F  S+ I          D+I SD  +    LH+    E Q
Sbjct: 362 SL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 159 FQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILK---NCGVSSSQIVKY 215
            + S + + S+        +            L ++++   +I K   +  +    + +Y
Sbjct: 421 PKESTISIPSIYLELKVKLEN--------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 216 VYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFRSLG 275
            Y++                    IG       +L  I        E+  L   +F    
Sbjct: 473 FYSH--------------------IGH------HLKNIEH-----PERMTLFRMVFLDFR 501

Query: 276 FSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRR---------DVDISSIVNNASLFLC 326
           F E  I    R    A+  S     S++ TL + +         D     +VN    FL 
Sbjct: 502 FLEQKI----RHDSTAWNASG----SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 327 SIESNL 332
            IE NL
Sbjct: 554 KIEENL 559

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.94
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.17
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.1
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	92.03
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	90.4
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	88.54
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	85.62
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	85.17
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	83.68
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	82.48

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.4e-56  Score=439.21  Aligned_cols=305  Identities=17%  Similarity=0.272  Sum_probs=275.3

Q ss_pred             cchHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHc
Q 048516           54 IDLADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEF  133 (389)
Q Consensus        54 f~~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~sl  133 (389)
                      . |++|| ++||++.++|.++++ .+++.+++++++|++||+++|++++||++++.++|++|.++++ ++.|+++||+++
T Consensus        21 ~-~v~~L-~s~Gl~~~~~~~~~p-~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~l   96 (343)
T 3mva_O           21 D-LLKNL-LTMGVDIDMARKRQP-GVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKI   96 (343)
T ss_dssp             C-HHHHH-HHHTCCHHHHHHHCG-GGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTT
T ss_pred             H-HHHHH-HHcCCCHHHHHHhCc-hhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHc
Confidence            6 99999 689999999999988 7889999999999999999999999999999999999999965 799999999999


Q ss_pred             CCChhhhhhHhhcCcccccccch-hhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCC----
Q 048516          134 GFSSSDIVDIISSDPWLLHRSAE-NQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVS----  208 (389)
Q Consensus       134 G~s~~~i~~iv~~~P~iL~~s~e-~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~----  208 (389)
                      |+++++++++|.++|++|..+.+ +++.|+++||+++|++++++.+++.++|+++++++|++ ++++++|+++|++    
T Consensus        97 G~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~  175 (343)
T 3mva_O           97 VTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHN  175 (343)
T ss_dssp             SSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCC
Confidence            99999999999999995444444 58999999999999999999999999999999999985 9999999988764    


Q ss_pred             --chhhhhhcccCcEeeeecchhHHHHHHHHH-HhCCCCCcc--cHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCHH
Q 048516          209 --SSQIVKYVYTYPTFFLYKPEKVRCFVQRVD-EIGFDRNSK--MYLPAIRTMSSMTKEKWELKLKLFR----SLGFSED  279 (389)
Q Consensus       209 --~~~I~~ll~~~P~il~~s~~~~~~~v~~l~-~lG~~~~~~--~f~~a~~~~~~~s~~~~~~kv~~l~----~~G~s~~  279 (389)
                        .+.|.+++.++|.+++++.+++++++++++ ++|+++++.  ++..-+..+...+.+.|+++++++.    ++||+++
T Consensus       176 ~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~  255 (343)
T 3mva_O          176 DPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEE  255 (343)
T ss_dssp             CHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHH
T ss_pred             cHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHH
Confidence              778999999999999999889999999999 599998642  1222123345567788899887665    7999999


Q ss_pred             HHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCceeecCCCCccchHHHHHHHHHHcCcccCCCCch--hh
Q 048516          280 NILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRKTGLA--TV  357 (389)
Q Consensus       280 ~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL~~Sle~ri~PR~~vl~~L~~kGl~~~~~~l~--~~  357 (389)
                      ||..||.++|++|++|+++|+++++||.+ ||++.++|+++|++|+||+| ||+|||   ++|.++|+   ++++.  ++
T Consensus       256 ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~---~~L~~~g~---~~~~~~~~~  327 (343)
T 3mva_O          256 EVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRI---KELVNAGC---NLSTLNITL  327 (343)
T ss_dssp             HHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHH---HHHHTTTC---CSSSSCGGG
T ss_pred             HHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHH---HHHHHCCC---CCCCCcchh
Confidence            99999999999999999999999999999 99999999999999999999 999999   56779998   56666  99


Q ss_pred             hcccHhhHHHhhcc
Q 048516          358 CKLSKGKFLEKYVL  371 (389)
Q Consensus       358 l~~se~~F~~k~v~  371 (389)
                      +++||++|.++|..
T Consensus       328 l~~s~~~F~~~~~~  341 (343)
T 3mva_O          328 LSWSKKRYEAKLKK  341 (343)
T ss_dssp             GGSCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHhc
Confidence            99999999999853

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.8e-50  Score=383.33  Aligned_cols=255  Identities=17%  Similarity=0.246  Sum_probs=238.8

Q ss_pred             hHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHHH
Q 048516           87 SDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVL  166 (389)
Q Consensus        87 ~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL  166 (389)
                      -..++++|.++|++.++|.+....+|.+|.+++++++.|+++||+++|+++++|+++++++|.+|.+++|+ +.|+++||
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            34789999999999999988777778889999999999999999999999999999999999999999997 99999999


Q ss_pred             HHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHH-HHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCC
Q 048516          167 NSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDIL-KNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRN  245 (389)
Q Consensus       167 ~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L-~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~  245 (389)
                      +++|++++++.+++.++|++|++++++ ++|++++| +++|++.+++.+++.++|++++.+.+                 
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-----------------  145 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-----------------  145 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-----------------
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-----------------
Confidence            999999999999999999999999996 99999999 57999999999999999999998754                 


Q ss_pred             cccHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCcee
Q 048516          246 SKMYLPAIRTMSSMTKEKWELKLKLF-RSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLF  324 (389)
Q Consensus       246 ~~~f~~a~~~~~~~s~~~~~~kv~~l-~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL  324 (389)
                                       +++++++++ +++||+++||..|+.++|++|++|+++|+++++||+++||++.++|+++|++|
T Consensus       146 -----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l  208 (270)
T 3m66_A          146 -----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVF  208 (270)
T ss_dssp             -----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGG
T ss_pred             -----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHh
Confidence                             356778876 48999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCccchHHHHHHHHHHcCcccCC---CCchhhhcccHhhHHHhhccCCCCccc
Q 048516          325 LCSIESNLKPRMRVYDMLKSKNLLRRK---TGLATVCKLSKGKFLEKYVLPYQDELG  378 (389)
Q Consensus       325 ~~Sle~ri~PR~~vl~~L~~kGl~~~~---~~l~~~l~~se~~F~~k~v~~~~e~~p  378 (389)
                      +||+| ||+|||.++++|.++|+..++   +++.+++.+||++|+++|++.+.|+.-
T Consensus       209 ~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~  264 (270)
T 3m66_A          209 NTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFE  264 (270)
T ss_dssp             GSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHH
T ss_pred             hCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHH
Confidence            99999 999999999999999998765   566779999999999999999988754

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=4.8e-37  Score=300.66  Aligned_cols=278  Identities=11%  Similarity=0.188  Sum_probs=233.4

Q ss_pred             CCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHH
Q 048516           83 DTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRS  162 (389)
Q Consensus        83 ~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~  162 (389)
                      +|.++++++++|.++|++.++   +++.+|+++..+++ +..++++||+++|+++++|+++|.++|.+|..+.+ +|.|+
T Consensus        15 ~~~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~   89 (343)
T 3mva_O           15 EPLKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKR   89 (343)
T ss_dssp             -----CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHH
T ss_pred             CccccHHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHH
Confidence            456788999999999999665   57789999999987 58999999999999999999999999999999964 89999


Q ss_pred             HHHHHHhhCChhHHHHHHHhcCc-ccccCchhhhhhHHHHHHHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhC
Q 048516          163 FLVLNSVLGSNAGVCKAIKATGW-FLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIG  241 (389)
Q Consensus       163 ~~fL~~~g~s~~~v~~~l~~~P~-lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG  241 (389)
                      ++||+++|++++++.+++.++|+ +++.+.+++++|+++||+++|++.++|.+++.++|++++++.+++++.+++++++|
T Consensus        90 l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lg  169 (343)
T 3mva_O           90 WDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAG  169 (343)
T ss_dssp             HHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhC
Confidence            99999999999999999999999 55555545899999999999999999999999999999999999999999999988


Q ss_pred             CCCCc---ccHHHH----HHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCC-CccccCHHhHHHHHHHHhh---c
Q 048516          242 FDRNS---KMYLPA----IRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMP-PAFTVSERKIRSVVETLLR---R  309 (389)
Q Consensus       242 ~~~~~---~~f~~a----~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P-~iL~~S~~~l~~k~~fL~~---~  309 (389)
                      ++.+.   ..++.+    -+.++..++++++++++|++ ++|++++++..++.+.| .++..+.+.++++++|+.+   .
T Consensus       170 v~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~  249 (343)
T 3mva_O          170 LSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS  249 (343)
T ss_dssp             HHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHT
T ss_pred             CCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHH
Confidence            76332   122222    23355667999999999999 59999999999999865 8999999999999999986   6


Q ss_pred             cCCChhhH----hhCCceeecCCCCccchHHHHHHHHHHcCcccCC-CCchhhhcccHhhHHHhh
Q 048516          310 RDVDISSI----VNNASLFLCSIESNLKPRMRVYDMLKSKNLLRRK-TGLATVCKLSKGKFLEKY  369 (389)
Q Consensus       310 mg~~~~~i----~~~P~lL~~Sle~ri~PR~~vl~~L~~kGl~~~~-~~l~~~l~~se~~F~~k~  369 (389)
                      +||+.++|    .++|.+|++|.|+ |+|++.++   ...|+...+ .....++.+|-++-..|+
T Consensus       250 lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl---~~mg~~~~~i~~~P~~l~~sleri~~R~  310 (343)
T 3mva_O          250 LGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCL---MEENISISQIIENPRVLDSSISTLKSRI  310 (343)
T ss_dssp             TTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHH---HTTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHH---HHcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence            89999886    6899999999995 99998665   457774332 345678888877654444

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=9.5e-37  Score=295.34  Aligned_cols=211  Identities=15%  Similarity=0.246  Sum_probs=187.1

Q ss_pred             hhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHH
Q 048516          123 LKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDIL  202 (389)
Q Consensus       123 L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L  202 (389)
                      +...+.+|.++|+++++|+++++++|.++.    .++.+.+.||..+|++.++|.+++.++|++|++++++ ++++++||
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL  120 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence            566788899999999999999999999875    3677899999999999999999999999999999876 99999999


Q ss_pred             HHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHH
Q 048516          203 KNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNI  281 (389)
Q Consensus       203 ~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v  281 (389)
                      +++|++.++|.+++.++|++++++.+                                  ++..++.+|+ ++|||.+||
T Consensus       121 ~~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev  166 (335)
T 4fp9_B          121 QKLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQV  166 (335)
T ss_dssp             HHTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHH
T ss_pred             HHcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHH
Confidence            99999999999999999999888754                                  4556677776 799999999


Q ss_pred             HHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhCCceeecCCCCccchHHHHHHHHHHcCcc----------cCC
Q 048516          282 LSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNNASLFLCSIESNLKPRMRVYDMLKSKNLL----------RRK  351 (389)
Q Consensus       282 ~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~P~lL~~Sle~ri~PR~~vl~~L~~kGl~----------~~~  351 (389)
                      ..||.++|+||++|.++|++|++||+++||++..+|++ |.+|+||++ ||+|||.+|+.|   |+.          ..+
T Consensus       167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~l---G~~q~~~~k~~~~~~n  241 (335)
T 4fp9_B          167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERL---GRYQTPDKKGQTQIPN  241 (335)
T ss_dssp             HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHH---TSCCCCCSSSCCSSCC
T ss_pred             HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHc---CCccCCCcccccCCCC
Confidence            99999999999999999999999999999999999997 999999999 999999777655   442          236


Q ss_pred             CCchhhhcccHhhHHHhhccCCCCcc
Q 048516          352 TGLATVCKLSKGKFLEKYVLPYQDEL  377 (389)
Q Consensus       352 ~~l~~~l~~se~~F~~k~v~~~~e~~  377 (389)
                      +++.+++..||+.|+.++.+...|+.
T Consensus       242 psL~~il~~sd~~F~~~vA~~s~eey  267 (335)
T 4fp9_B          242 PLLKDILRVSEAEFLARTACTSVEEF  267 (335)
T ss_dssp             CCHHHHTTSCHHHHHHHTSCCCHHHH
T ss_pred             ccHHHHHcCCHHHHHHHHHhcCHHHH
Confidence            78999999999999999988776543

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=4.7e-33  Score=263.63  Aligned_cols=211  Identities=17%  Similarity=0.256  Sum_probs=191.7

Q ss_pred             hHHHhhhccCCCHHHHHHhhc---cccCCCCCcChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHH
Q 048516           56 LADYLINRQHFSPESASEASS---LNFSLKDTENSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHE  132 (389)
Q Consensus        56 ~~~yLi~s~Gls~~~a~~~s~---~~~~l~~~~~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~s  132 (389)
                      +++||. ++|++.+++.+.-.   ..++++..++..++++||+++|+++++|++++.++|.+|.+++++ +.|+++||++
T Consensus         8 ~l~~L~-~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~   85 (270)
T 3m66_A            8 TLQKLV-LLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHS   85 (270)
T ss_dssp             HHHHHH-HTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHH
T ss_pred             HHHHHH-HcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHH
Confidence            899997 79999999876532   114555456899999999999999999999999999999999998 9999999999


Q ss_pred             cCCChhhhhhHhhcCcccccccchhhhHHHHHHH-HHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHH-HHcCCCch
Q 048516          133 FGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVL-NSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDIL-KNCGVSSS  210 (389)
Q Consensus       133 lG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL-~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L-~~lGv~~~  210 (389)
                      +|++.++|++++.++|++|+.+++ ++.|+++|| .++|++++++.+++.++|.+++.+.++ ++++++++ +++|++.+
T Consensus        86 ~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s~~  163 (270)
T 3m66_A           86 KNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKHN  163 (270)
T ss_dssp             TTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCCHH
T ss_pred             cCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCCHH
Confidence            999999999999999999999999 599999999 589999999999999999999999986 99999976 67999999


Q ss_pred             hhhhhcccCcEeeeecchhHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCC
Q 048516          211 QIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDRNSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMP  289 (389)
Q Consensus       211 ~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P  289 (389)
                      +|.+++.++|.+++++.                                  +++++|++|+. ++||+.++|    .++|
T Consensus       164 ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~i----~~~P  205 (270)
T 3m66_A          164 EIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHII----VKFP  205 (270)
T ss_dssp             HHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHHH----HHCG
T ss_pred             HHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHHH----HhCc
Confidence            99999999999988764                                  56788899997 699999986    6899


Q ss_pred             CccccCHHhHHHHHHHHhh
Q 048516          290 PAFTVSERKIRSVVETLLR  308 (389)
Q Consensus       290 ~iL~~S~~~l~~k~~fL~~  308 (389)
                      ++|++|.++|+++.+|+..
T Consensus       206 ~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          206 QVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             GGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhCCHHHHHHHHHHHHH
Confidence            9999998899999999876

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.94  E-value=1.5e-26  Score=223.97  Aligned_cols=181  Identities=19%  Similarity=0.251  Sum_probs=168.0

Q ss_pred             ChHHHHHHHHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHH
Q 048516           86 NSDSVLSFLRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLV  165 (389)
Q Consensus        86 ~~~~vl~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~f  165 (389)
                      +++.++..|.++||+++||++++..+|.++..    ++.+++.||.++|++.++|++||.++|++|..+++ +|.|+++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            57889999999999999999999999998743    58899999999999999999999999999999997 69999999


Q ss_pred             HHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHH-HcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCCCC
Q 048516          166 LNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILK-NCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGFDR  244 (389)
Q Consensus       166 L~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~-~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~  244 (389)
                      |+++|++.+++.+++.++|++|+++.++ +..++.+|+ ++|++.++|..++.++|++|+++                  
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S------------------  180 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED------------------  180 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC------------------
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC------------------
Confidence            9999999999999999999999999986 899999986 59999999999999999999886                  


Q ss_pred             CcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCC
Q 048516          245 NSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDV  312 (389)
Q Consensus       245 ~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~  312 (389)
                                      .+++++|++|+. +||++.++|.    + |++|++|.++|+++..||.. +|.
T Consensus       181 ----------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          181 ----------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             ----------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             ----------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence                            456789999998 7999999984    3 99999999999999999998 776

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.17  E-value=1.6e-10  Score=96.38  Aligned_cols=177  Identities=14%  Similarity=0.240  Sum_probs=146.2

Q ss_pred             HHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHHcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhC
Q 048516          162 SFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKNCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIG  241 (389)
Q Consensus       162 ~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG  241 (389)
                      .+.-+.-+|+..+-+.-++++.|.+|...+-. +..+-.+|+.+|+.+..+.+++.-+|.++++....+...        
T Consensus        36 iisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdindt--------  106 (239)
T 4fzv_B           36 IISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDT--------  106 (239)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHH--------
T ss_pred             HHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHH--------
Confidence            34444557888899999999999999998876 889999999999999999999999999998876555444        


Q ss_pred             CCCCcccHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccCCChhhHhhC
Q 048516          242 FDRNSKMYLPAIRTMSSMTKEKWELKLKLFR-SLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRDVDISSIVNN  320 (389)
Q Consensus       242 ~~~~~~~f~~a~~~~~~~s~~~~~~kv~~l~-~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg~~~~~i~~~  320 (389)
                                                +..++ +.-|+..+|.+++..+|.++.-+...++-+++|-.-.||+..-+|++.
T Consensus       107 --------------------------vrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks  160 (239)
T 4fzv_B          107 --------------------------VRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS  160 (239)
T ss_dssp             --------------------------HHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT
T ss_pred             --------------------------HHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH
Confidence                                      44555 467999999999999999999999999999999999999999999986


Q ss_pred             CceeecCCCCccchHHHHHHHHHH------cCccc-CCCCchhhhcccHhhHHHhhccCCCC
Q 048516          321 ASLFLCSIESNLKPRMRVYDMLKS------KNLLR-RKTGLATVCKLSKGKFLEKYVLPYQD  375 (389)
Q Consensus       321 P~lL~~Sle~ri~PR~~vl~~L~~------kGl~~-~~~~l~~~l~~se~~F~~k~v~~~~e  375 (389)
                       .+|.||+. .|+.||-+++.|-+      +|-.. .++-+.+++..||.+|+.+-.....|
T Consensus       161 -eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsve  220 (239)
T 4fzv_B          161 -EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVE  220 (239)
T ss_dssp             -TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHH
T ss_pred             -HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHH
Confidence             88999998 79999988876632      23221 35668899999999999987665443

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.10  E-value=2.7e-05  Score=64.98  Aligned_cols=141  Identities=16%  Similarity=0.278  Sum_probs=119.7

Q ss_pred             HHhCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCChhhhhhHhhcCcccccccchhhhHHHHHHHHHh-hCC
Q 048516           94 LRESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSSSDIVDIISSDPWLLHRSAENQFQRSFLVLNSV-LGS  172 (389)
Q Consensus        94 L~~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~-g~s  172 (389)
                      +-=+|+.++-+.-++++.|++|....- .+..+-.+|+.+|+....+.+++..+|.|++..-. .|...+..+++- .++
T Consensus        40 fillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrllkekclft  117 (239)
T 4fzv_B           40 FILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFT  117 (239)
T ss_dssp             HHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHHHSCCC
T ss_pred             HHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHHhHHhh
Confidence            345899999999999999999998765 58888999999999999999999999999998754 688899999875 568


Q ss_pred             hhHHHHHHHhcCcccccCchhhhhhHHHHHH-HcCCCchhhhhhcccCcEeeeecchhHHHHHHHHHHhCC
Q 048516          173 NAGVCKAIKATGWFLRRDLEKTLIPTIDILK-NCGVSSSQIVKYVYTYPTFFLYKPEKVRCFVQRVDEIGF  242 (389)
Q Consensus       173 ~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~-~lGv~~~~I~~ll~~~P~il~~s~~~~~~~v~~l~~lG~  242 (389)
                      ..++.+++..||.+|..++.. +.-++.+-. .+|+..-+|.+-     ..+.++..+++..--+++.+|-
T Consensus       118 vqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivks-----eylqysltkikqrhiylerlgr  182 (239)
T 4fzv_B          118 VQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVKS-----EYLQYSLTKIKQRHIYLERLGR  182 (239)
T ss_dssp             HHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHHT-----TGGGSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhHH-----HHHHHHHHHHHHHHhHHHHhcc
Confidence            899999999999999999875 888877754 489999888653     3466777788888888888885

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=92.03  E-value=0.72  Score=37.10  Aligned_cols=82  Identities=20%  Similarity=0.331  Sum_probs=51.7

Q ss_pred             hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHH------hCCCCHHHHHHHHhcCCccccccccc--chhhHH
Q 048516           56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLR------ESGFSSTHIEKMVAKKPNILLINLHN--TLKPKI  127 (389)
Q Consensus        56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~------~lGls~~~i~~iv~~~P~lL~~~~~~--~L~pkl  127 (389)
                      ++..|+ ..||+...+.+|.+     .+-.+++.+++||-      +-|+++.++...+..+..    +..+  .-...+
T Consensus        11 ~v~~l~-~MGFp~~~~~kAl~-----~~g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~----~~~~~~~~~~~v   80 (118)
T 4ae4_A           11 CVETVV-NMGYSYECVLRAMK-----AAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQC----SEEKMMEFLQLM   80 (118)
T ss_dssp             HHHHHH-HTTCCHHHHHHHHH-----HHCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHH
T ss_pred             HHHHHH-HcCCCHHHHHHHHH-----HHCcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccC----CccccccCHHHH
Confidence            778887 69999999988865     22237888888884      457787777766654321    1110  011246


Q ss_pred             HHHHHcCCChhhhhhHhhcC
Q 048516          128 KIFHEFGFSSSDIVDIISSD  147 (389)
Q Consensus       128 ~fL~slG~s~~~i~~iv~~~  147 (389)
                      .-|.++||+..++.+.+..+
T Consensus        81 ~~L~eMGF~~~~a~~AL~~~  100 (118)
T 4ae4_A           81 SKFKEMGFELKDIKEVLLLH  100 (118)
T ss_dssp             HHHHHTTCCHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHc
Confidence            66667777777766665544

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=90.40  E-value=0.4  Score=38.63  Aligned_cols=40  Identities=18%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHcCCCccccCHHhHHHHHHHHhhccC
Q 048516          265 ELKLKLFRSLGFSEDNILSMFRSMPPAFTVSERKIRSVVETLLRRRD  311 (389)
Q Consensus       265 ~~kv~~l~~~G~s~~~v~~~~~~~P~iL~~S~~~l~~k~~fL~~~mg  311 (389)
                      .+++.-|.+|||+.+++..+++.+-       ..+.+.+++|....|
T Consensus        77 ~~~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL~~~~~  116 (118)
T 4ae4_A           77 LQLMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHhcc
Confidence            4678888999999999999987643       457778888876544

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=88.54  E-value=0.47  Score=45.92  Aligned_cols=27  Identities=7%  Similarity=0.245  Sum_probs=16.5

Q ss_pred             cChHHHHHHHHhCCCCHHHHHHHHhcC
Q 048516           85 ENSDSVLSFLRESGFSSTHIEKMVAKK  111 (389)
Q Consensus        85 ~~~~~vl~~L~~lGls~~~i~~iv~~~  111 (389)
                      ++-+..++-|.++||+..++.+.++..
T Consensus       166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~  192 (368)
T 1oqy_A          166 SEYETMLTEIMSMGYERERVVAALRAS  192 (368)
T ss_dssp             TTHHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            344555666666777766666666543

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=85.62  E-value=0.32  Score=47.12  Aligned_cols=39  Identities=13%  Similarity=0.253  Sum_probs=29.0

Q ss_pred             hHHHhhhccCCCHHHHHHhhccccCCCCCcChHHHHHHHHhCCCCH
Q 048516           56 LADYLINRQHFSPESASEASSLNFSLKDTENSDSVLSFLRESGFSS  101 (389)
Q Consensus        56 ~~~yLi~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~L~~lGls~  101 (389)
                      +|.-|+ ..||+++++.+|-+     .+..|++..++||-+ |+.+
T Consensus       171 ~i~~l~-~MGf~~~~~~~AL~-----a~~nn~~~A~e~L~~-gip~  209 (368)
T 1oqy_A          171 MLTEIM-SMGYERERVVAALR-----ASYNNPHRAVEYLLT-GIPG  209 (368)
T ss_dssp             HHHHHH-TTTCCSHHHHHHHH-----HSCSSTTHHHHTTTT-SSTT
T ss_pred             HHHHHH-HcCCCHHHHHHHHH-----HcCCCHHHHHHHHHh-CCCc
Confidence            467887 69999999998866     233588888999854 5553

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=85.17  E-value=1.9  Score=29.55  Aligned_cols=26  Identities=12%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHc
Q 048516          262 EKWELKLKLFRSLGFSEDNILSMFRS  287 (389)
Q Consensus       262 ~~~~~kv~~l~~~G~s~~~v~~~~~~  287 (389)
                      ..+..|++||++=|++++||..++.+
T Consensus        28 sp~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           28 SPLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            45789999999999999999999876

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=83.68  E-value=1.5  Score=30.03  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=9.7

Q ss_pred             hHHHHHHHcCCChhhhhhHh
Q 048516          125 PKIKIFHEFGFSSSDIVDII  144 (389)
Q Consensus       125 pkl~fL~slG~s~~~i~~iv  144 (389)
                      -|++||++.|++.+||...+
T Consensus        32 ~K~~FL~sKGLt~~EI~~Al   51 (54)
T 3ff5_A           32 TRRAFLKKKGLTDEEIDLAF   51 (54)
T ss_dssp             HHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHH
Confidence            34555555555555544443

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=82.48  E-value=0.73  Score=47.68  Aligned_cols=144  Identities=13%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             hccCCCHHHHHHhhccccCCCCCcChHHHHHH---HH-hCCCCHHHHHHHHhcCCcccccccccchhhHHHHHHHcCCCh
Q 048516           62 NRQHFSPESASEASSLNFSLKDTENSDSVLSF---LR-ESGFSSTHIEKMVAKKPNILLINLHNTLKPKIKIFHEFGFSS  137 (389)
Q Consensus        62 ~s~Gls~~~a~~~s~~~~~l~~~~~~~~vl~~---L~-~lGls~~~i~~iv~~~P~lL~~~~~~~L~pkl~fL~slG~s~  137 (389)
                      ..+|||+++..+++.   +.-...-.+.|.+.   |. .+||+.+||.+|-...-.=-....-..+.|.+.  +..|+++
T Consensus       420 ~~~glt~~qvv~IAs---n~GGkQALe~V~~llp~L~~~~glt~aqvVaIAsn~GGkQALeaV~~llpvl~--~~~gls~  494 (1047)
T 3ugm_A          420 QAHGLTPDQVVAIAS---HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC--QAHGLTP  494 (1047)
T ss_dssp             TTSSCCHHHHHHHHS---STTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHHHHHHHHHHHHH--HHSCCCS
T ss_pred             hhcCCCHHHhhhhhc---cCchHHHHHHHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHHHHHHHHHHHHH--HhcCCCH
Confidence            346666666666543   10011112333322   22 567777776665544321111100001222211  2478888


Q ss_pred             hhhhhHhhcCcccccccchhhhHHHHHHHHHhhCChhHHHHHHHhcCcccccCchhhhhhHHHHHHH-cCCCchhhhhh
Q 048516          138 SDIVDIISSDPWLLHRSAENQFQRSFLVLNSVLGSNAGVCKAIKATGWFLRRDLEKTLIPTIDILKN-CGVSSSQIVKY  215 (389)
Q Consensus       138 ~~i~~iv~~~P~iL~~s~e~~L~p~~~fL~~~g~s~~~v~~~l~~~P~lL~~sle~~l~p~v~~L~~-lGv~~~~I~~l  215 (389)
                      ++|..|...+-.-=....-..+.|.+.  +..|++.++|+++....---  .-+|. +..-.-.|++ .|++.++|..+
T Consensus       495 ~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~gls~~qVVaIAsN~GGk--QALea-V~~~lp~Lr~a~~ls~~qVVaI  568 (1047)
T 3ugm_A          495 DQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGK--QALET-VQRLLPVLCQAHGLTPDQVVAI  568 (1047)
T ss_dssp             HHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTCCCSHHHHHHHSSTTCH--HHHHH-HHHHHHHHTTTSCCTHHHHHHH
T ss_pred             HHHHHHHhccchHHHHHHHHHhhhhhc--cccCCCHHHhhhhhcCCcHH--HHHHH-HHHHhHHHHHHhCCCHHHeeee
Confidence            777777654321000000011222222  34566666666555332110  01222 3333333442 66666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	82.25

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.25  E-value=0.39  Score=29.45  Aligned_cols=26  Identities=19%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHcC
Q 048516          263 KWELKLKLFRSLGFSEDNILSMFRSM  288 (389)
Q Consensus       263 ~~~~kv~~l~~~G~s~~~v~~~~~~~  288 (389)
                      ..+++|+-+.+|||+++++..++++.
T Consensus         3 ~~e~~i~~L~~MGF~~~~a~~AL~~~   28 (41)
T d1oqya1           3 EYETMLTEIMSMGYERERVVAALRAS   28 (41)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            45778888888999999988888764