Citrus Sinensis ID: 048575

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MESKKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHEcccccccccccccccccccccEEEEEEcccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHcccccccHHHHcccHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MESKKSNKIREIVRLQQILRKWRKlanspktstggnnnnnsaSKSIKFLKRTlslsdnplhnaststvpkgYLAVCVGEELkrfiiptdylsHQAFHILLREAEEefgfqqtgvlripcEVAVFESILKMVEQKKDTFFMQdcrfniddtkgycsseyqqtpshhpqspmcr
Flexible Loop (DISEMBL)
meskksnkirEIVRLQQILRKWRKlanspktstggnnnnnsaSKSIKFLKRTLSLSdnplhnaststvpkgYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSeyqqtpshhpqspmcr
Low Complexity Region (SEG)
MESKKSNKIREIVRLQQILRKWRKLAnspktstggnnnnnsasksIKFLKRTLSLSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR
Disordered region (IsUnstruct)
******************************************************************TVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYC******************
Disordered Region (DISOPRED)
***********IVRLQQILRKWR***********************************************GYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKK**FFMQDCRFNIDD*****************QSPMCR
Disordered Region (DISEMBL)
********IREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSE***************
Disordered Region (DISPRO)
*****SNKIREIVRLQQILRKWRKLANS************************************TSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQ*************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESKKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
P33081	82	Auxin-induced protein 15A	no	no	0.366	0.768	0.546	3e-12
P33082	82	Auxin-induced protein X15	no	no	0.343	0.719	0.55	1e-11
P33083	90	Auxin-induced protein 6B	no	no	0.348	0.666	0.540	3e-11
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.430	0.804	0.457	1e-10
P33080	92	Auxin-induced protein X10	no	no	0.348	0.652	0.491	2e-10
P33079	93	Auxin-induced protein 10A	no	no	0.308	0.569	0.537	2e-09

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 65  TSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAV 123
            +  PKGYLAV VGE+LKRF+IP  YL+  +F  LL +AEEEFG+    G L IPC   V
Sbjct: 14  AADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDV 73

Query: 124 FESI 127
           F+ I
Sbjct: 74  FQCI 77

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 69  PKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFESI 127
           PKGYLAV VGE++KRF+IP  Y++  +F  LL +AEEEFG+    G L IPC   VF+ I
Sbjct: 18  PKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRI 77

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 68  VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFES 126
           V KGYLAV VGE+++RF+IP  YL+  +F  LL +AEEEFG+    G L IPC   VF+ 
Sbjct: 25  VEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQH 84

Query: 127 I 127
           I
Sbjct: 85  I 85

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 9/83 (10%)

Query: 49  LKRTLSLSDNPLHNASTSTV---PKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEE 105
           +++TLS       N ++S V   PKGYLAV VGE +KRF+IP  +L+   F  LL +AEE
Sbjct: 8   IRKTLSA-----RNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEE 62

Query: 106 EFGFQQ-TGVLRIPCEVAVFESI 127
           EFG+    G L IPC   +F+ I
Sbjct: 63  EFGYDHPMGGLTIPCSEDLFQHI 85

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 68  VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFES 126
           VPKGYL V VG++++RF+IP  YL+  +F  LL +AEEEFG+    G L IPC+   F +
Sbjct: 25  VPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLT 84

Query: 127 I 127
           +
Sbjct: 85  V 85

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 68  VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCE 120
           VPKGY AV VG++++RF IP  YL+  +F  LL +AEEEFG+    G L IPC+
Sbjct: 26  VPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCK 79

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224121228	169	SAUR family protein [Populus trichocarpa	0.982	1.0	0.715	4e-62
356552605	174	PREDICTED: uncharacterized protein LOC10	0.988	0.977	0.676	2e-58
357436671	179	Auxin-induced protein 6B [Medicago trunc	0.988	0.949	0.681	3e-58
357466563	171	Auxin-induced protein 6B [Medicago trunc	0.965	0.970	0.688	4e-58
356563729	173	PREDICTED: uncharacterized protein LOC10	0.970	0.965	0.680	1e-57
388523065	171	unknown [Medicago truncatula]	0.965	0.970	0.682	1e-57
388512173	171	unknown [Medicago truncatula]	0.965	0.970	0.682	1e-57
388512795	166	unknown [Lotus japonicus]	0.941	0.975	0.650	3e-56
225443371	177	PREDICTED: uncharacterized protein LOC10	0.982	0.954	0.638	2e-52
147785157	177	hypothetical protein VITISV_011167 [Viti	0.982	0.954	0.638	2e-52

>gi|224121228|ref|XP_002330775.1| SAUR family protein [Populus trichocarpa] gi|222872577|gb|EEF09708.1| SAUR family protein [Populus trichocarpa]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 144/172 (83%), Gaps = 3/172 (1%)

Query: 1   MESKKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPL 60
           M+SKKSNKIR+IVRLQQIL+KWRKLA+   +S     +  ++SKS+KFLKRTLS+ +N  
Sbjct: 1   MDSKKSNKIRDIVRLQQILKKWRKLAS---SSRTTAASTTTSSKSMKFLKRTLSIPENSA 57

Query: 61  HNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCE 120
              S++ VPKGYLAV VGEE KRFIIPT+YLSH AF ILLREAEEEFGFQQ GVLRIPCE
Sbjct: 58  KETSSNAVPKGYLAVGVGEEQKRFIIPTEYLSHPAFLILLREAEEEFGFQQAGVLRIPCE 117

Query: 121 VAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           VAVFESILK+VE+KKD FFMQ+CR ++D+   YCSS+ QQTPSHHPQSPMCR
Sbjct: 118 VAVFESILKLVEEKKDLFFMQECRLDVDNIAVYCSSKSQQTPSHHPQSPMCR 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552605|ref|XP_003544655.1| PREDICTED: uncharacterized protein LOC100799598 [Glycine max]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 136/176 (77%), Gaps = 6/176 (3%)

Query: 1   MESKKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSAS----KSIKFLKRTLSLS 56
           M+ KKSNKIREIVRLQQIL+KWRKLANS KT+        + +    KS+K+LKRTLSLS
Sbjct: 1   MDLKKSNKIREIVRLQQILKKWRKLANSSKTTMVTTTATATVTSSASKSMKYLKRTLSLS 60

Query: 57  DNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLR 116
           +      S++ VPKGYLAVCVGEELKRF IPT+YL HQAF ILLREAEEEFGFQQTGVLR
Sbjct: 61  ER--EGGSSNVVPKGYLAVCVGEELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLR 118

Query: 117 IPCEVAVFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           IPCEVAVFESILKMVE K+D F  Q+CR +I++      SE Q   SHHPQSP+CR
Sbjct: 119 IPCEVAVFESILKMVEGKEDKFSSQECRLSIEEMMMGYRSENQLAYSHHPQSPLCR 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436671|ref|XP_003588611.1| Auxin-induced protein 6B [Medicago truncatula] gi|355477659|gb|AES58862.1| Auxin-induced protein 6B [Medicago truncatula]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 122/179 (68%), Positives = 140/179 (78%), Gaps = 9/179 (5%)

Query: 1   MESKKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPL 60
           M+ KKSNKIREIVRLQQIL+KWRK+ANS KT+   N    + SKS+KFLKRTLSLS+   
Sbjct: 3   MDQKKSNKIREIVRLQQILKKWRKIANSSKTTA--NTTTITRSKSMKFLKRTLSLSEREG 60

Query: 61  HNASTS---TVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRI 117
              S++   +VPKGYLAVCVGEELKRFIIPT+YL HQAF ILLREAEEEFGFQQ GVLRI
Sbjct: 61  GTTSSNNNGSVPKGYLAVCVGEELKRFIIPTEYLGHQAFQILLREAEEEFGFQQAGVLRI 120

Query: 118 PCEVAVFESILKMVE---QKKDTFFMQDCR-FNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           PCEV+ FESILKMVE   + KD F  Q+CR  +I++  GYCS E Q   SHHPQSP+CR
Sbjct: 121 PCEVSTFESILKMVEDHGKNKDKFSNQECRSISIEEMMGYCSLENQLACSHHPQSPLCR 179

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466563|ref|XP_003603566.1| Auxin-induced protein 6B [Medicago truncatula] gi|355492614|gb|AES73817.1| Auxin-induced protein 6B [Medicago truncatula]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 134/170 (78%), Gaps = 4/170 (2%)

Query: 4   KKSNKIREIVRLQQILRKWRKLANSPKTSTGGN-NNNNSASKSIKFLKRTLSLSDNPLHN 62
           KK NKIREIVRLQQIL+KWR++AN+ KT    + NNN++ SKSIKFLKRTLS+S+     
Sbjct: 5   KKPNKIREIVRLQQILKKWRRVANTSKTYRSSSINNNSTTSKSIKFLKRTLSMSERE-GG 63

Query: 63  ASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVA 122
            S + VPKGYLAVCVG +L RF+IPT+YL+HQAFHILLREAEEEFGF+QTGVLRIPCEV+
Sbjct: 64  GSNNAVPKGYLAVCVGVDLNRFVIPTEYLAHQAFHILLREAEEEFGFEQTGVLRIPCEVS 123

Query: 123 VFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           VFESILKMVE  KD F  Q CRF I+   GYCSS  Q    H P SPMCR
Sbjct: 124 VFESILKMVE-GKDRFSTQKCRFGIEKMMGYCSSN-QLGYYHQPHSPMCR 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563729|ref|XP_003550112.1| PREDICTED: uncharacterized protein LOC100779842 [Glycine max]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 135/169 (79%), Gaps = 2/169 (1%)

Query: 4   KKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPLHNA 63
           KKSNKIREIVRL++IL+KWRK+ANS K++T      ++ SKS+KFLKRTLSLS+      
Sbjct: 7   KKSNKIREIVRLKEILKKWRKIANSSKSTTTIATATSTTSKSMKFLKRTLSLSER--EGG 64

Query: 64  STSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAV 123
           S++ VPKGYLAVCVGEELKRF IPT++L HQAF ILLREAEEEFGFQQTGVLRIPCEVA 
Sbjct: 65  SSNVVPKGYLAVCVGEELKRFTIPTEHLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAA 124

Query: 124 FESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           FESILKMVE K+D F  Q+CR +I++      SE Q   SHHPQSP+CR
Sbjct: 125 FESILKMVEGKEDMFSSQECRLSIEEMMIEYCSENQLAYSHHPQSPLCR 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523065|gb|AFK49594.1| unknown [Medicago truncatula]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/170 (68%), Positives = 134/170 (78%), Gaps = 4/170 (2%)

Query: 4   KKSNKIREIVRLQQILRKWRKLANSPKTSTGGN-NNNNSASKSIKFLKRTLSLSDNPLHN 62
           KK +KIREIVRLQQIL+KWR++AN+ KT    + NNN++ SKSIKFLKRTLS+S+     
Sbjct: 5   KKPSKIREIVRLQQILKKWRRVANTSKTYRSSSINNNSTTSKSIKFLKRTLSMSERE-GG 63

Query: 63  ASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVA 122
            S + VPKGYLAVCVG +L RF+IPT+YL+HQAFHILLREAEEEFGF+QTGVLRIPCEV+
Sbjct: 64  GSNNAVPKGYLAVCVGVDLNRFVIPTEYLAHQAFHILLREAEEEFGFEQTGVLRIPCEVS 123

Query: 123 VFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           VFESILKMVE  KD F  Q CRF I+   GYCSS  Q    H P SPMCR
Sbjct: 124 VFESILKMVE-GKDRFSTQKCRFGIEKMMGYCSSN-QLGYYHQPHSPMCR 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512173|gb|AFK44148.1| unknown [Medicago truncatula]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/170 (68%), Positives = 133/170 (78%), Gaps = 4/170 (2%)

Query: 4   KKSNKIREIVRLQQILRKWRKLANSPKTSTGGN-NNNNSASKSIKFLKRTLSLSDNPLHN 62
           KK NKIREIVRLQQIL+KWR++AN+ K     + NNN++ SKSIKFLKRTLS+S+     
Sbjct: 5   KKPNKIREIVRLQQILKKWRRVANTSKIYRSSSINNNSTTSKSIKFLKRTLSMSERE-GG 63

Query: 63  ASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVA 122
            S + VPKGYLAVCVG +L RF+IPT+YL+HQAFHILLREAEEEFGF+QTGVLRIPCEV+
Sbjct: 64  GSNNAVPKGYLAVCVGVDLNRFVIPTEYLAHQAFHILLREAEEEFGFEQTGVLRIPCEVS 123

Query: 123 VFESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           VFESILKMVE  KD F  Q CRF I+   GYCSS  Q    H P SPMCR
Sbjct: 124 VFESILKMVE-GKDRFSTQKCRFGIEKMMGYCSSN-QLGYYHQPHSPMCR 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512795|gb|AFK44459.1| unknown [Lotus japonicus]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 132/169 (78%), Gaps = 7/169 (4%)

Query: 4   KKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPLHNA 63
           K+ NKIREIVRLQQIL+KWR++ANS KT+      +NS++    FLKRTLS+SD      
Sbjct: 5   KRPNKIREIVRLQQILKKWRRVANSSKTT-----RSNSSNHKTSFLKRTLSISDRA-EGG 58

Query: 64  STSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAV 123
           S++ VPKGYLAVCVGE+L RF+IPT+YL HQAFH+LLREAEEEFGF+QTGVLRIPC+V V
Sbjct: 59  SSNLVPKGYLAVCVGEDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCDVYV 118

Query: 124 FESILKMVEQKKDTFFMQDCRFNIDDTKGYCSSEYQQTPSHHPQSPMCR 172
           F+SILK+VE  KD F  Q CRF+I+   GYCSS +    SH PQSPMCR
Sbjct: 119 FQSILKIVE-GKDRFSTQKCRFSIEKMMGYCSSNHLAAYSHQPQSPMCR 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443371|ref|XP_002266916.1| PREDICTED: uncharacterized protein LOC100242742 [Vitis vinifera]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 140/180 (77%), Gaps = 11/180 (6%)

Query: 1   MESKKSNKIREIVRLQQILRKWRKLANSPKTST------GGNNNNNSASKSIKFLKRTLS 54
           M+SKKSNKI EIVRLQQIL+KW+KLAN+PK S         ++++N+ SKSIKFLK+TLS
Sbjct: 1   MDSKKSNKISEIVRLQQILKKWKKLANAPKNSNKNGSHSSTSSSSNNGSKSIKFLKKTLS 60

Query: 55  LSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGV 114
            +D      ST  VPKG+LAVCVG+ELKRFIIPT+YL HQAF +LLREAEEEFGFQQ GV
Sbjct: 61  FTDTT-SMLSTEVVPKGFLAVCVGKELKRFIIPTEYLGHQAFGVLLREAEEEFGFQQEGV 119

Query: 115 LRIPCEVAVFESILKMVEQKKDTFFMQDCRFNID-DTKGYC-SSEYQQTPSHHPQSPMCR 172
           L+IPCEVAVFE ILK+VE+K+D FF+ +   N + +  G C SS+ + TPSHHPQ  MCR
Sbjct: 120 LKIPCEVAVFERILKVVEEKRDVFFLHEFGLNAEKEMIGCCSSSDCELTPSHHPQ--MCR 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785157|emb|CAN62212.1| hypothetical protein VITISV_011167 [Vitis vinifera]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 140/180 (77%), Gaps = 11/180 (6%)

Query: 1   MESKKSNKIREIVRLQQILRKWRKLANSPKTST------GGNNNNNSASKSIKFLKRTLS 54
           M+SKKSNKI EIVRLQQIL+KW+KLAN+PK S         ++++N+ SKSIKFLK+TLS
Sbjct: 1   MDSKKSNKISEIVRLQQILKKWKKLANAPKNSNKNGSHGSTSSSSNNGSKSIKFLKKTLS 60

Query: 55  LSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGV 114
            +D      ST  VPKG+LAVCVG+ELKRFIIPT+YL HQAF +LLREAEEEFGFQQ GV
Sbjct: 61  FTDTT-SMLSTEVVPKGFLAVCVGKELKRFIIPTEYLGHQAFGVLLREAEEEFGFQQEGV 119

Query: 115 LRIPCEVAVFESILKMVEQKKDTFFMQDCRFNID-DTKGYC-SSEYQQTPSHHPQSPMCR 172
           L+IPCEVAVFE ILK+VE+K+D FF+ +   N + +  G C SS+ + TPSHHPQ  MCR
Sbjct: 120 LKIPCEVAVFERILKVVEEKRDVFFLHEFGLNAEKEMIGCCSSSDCELTPSHHPQ--MCR 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2061037	178	AT2G24400 "AT2G24400" [Arabido	0.959	0.926	0.556	1e-43
TAIR|locus:2128136	189	AT4G31320 [Arabidopsis thalian	0.959	0.873	0.525	7.3e-43
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.773	0.831	0.419	3.9e-21
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.767	0.694	0.425	6.3e-21
TAIR|locus:2035444	153	AT1G19840 "AT1G19840" [Arabido	0.505	0.568	0.4	1.2e-19
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.5	0.558	0.411	1.3e-18
TAIR|locus:2139569	150	AT4G34750 [Arabidopsis thalian	0.412	0.473	0.450	2.1e-18
TAIR|locus:2183805	148	AT5G10990 "AT5G10990" [Arabido	0.470	0.547	0.407	2.9e-17
TAIR|locus:2141786	105	AT4G38860 "AT4G38860" [Arabido	0.494	0.809	0.443	3.2e-16
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	0.406	0.648	0.457	5.2e-16

TAIR|locus:2061037 AT2G24400 "AT2G24400" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 103/185 (55%), Positives = 124/185 (67%)

Query:     1 MESKKSNKIREIVRLQQILRKWRKLAXXXXXXXXXXXXXXXX---XXXIKFLKRTLSLSD 57
             ME+KKSNKIREIV+LQQ+L+KWRK A                      IKFLKRTLS +D
Sbjct:     1 MEAKKSNKIREIVKLQQLLKKWRKQAIASKAANNNNEDNNSSGGGSKSIKFLKRTLSFTD 60

Query:    58 NPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRI 117
                     + VPKGYLAV VG E KR+ IPT+YLSHQAF++LLREAEEEFGFQQ GVLRI
Sbjct:    61 -------VTAVPKGYLAVSVGLEKKRYTIPTEYLSHQAFYVLLREAEEEFGFQQAGVLRI 113

Query:   118 PCEVAVFESILKMVEQKKDTFFM------QDCRFNI--DDTKGYCS-SEYQQTPSHHPQ- 167
             PCEV+VFESILK++E+K + + +      Q+C+FN   DD   Y   S+  +TPSH P  
Sbjct:   114 PCEVSVFESILKIMEEKNEGYLVTPITAKQECKFNAAADDKTSYQHPSDCPKTPSHQPHN 173

Query:   168 SPMCR 172
             SPMCR
Sbjct:   174 SPMCR 178

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2128136 AT4G31320 [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 103/196 (52%), Positives = 125/196 (63%)

Query:     1 MESKKSNKIREIVRLQQILRKWRKLAXXXXXXXXXX-------------------XXXXX 41
             ME+KKSNKIREIV+LQQIL+KWRK+A                                  
Sbjct:     1 MEAKKSNKIREIVKLQQILKKWRKVAHASKQANNNKIDNVDDSNNNISININNNGSGSGS 60

Query:    42 XXXXIKFLKRTLSLSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLR 101
                 IKFLKRTLS +D       T+ +PKGYLAV VG+E KR+ IPT+YLSHQAFH+LLR
Sbjct:    61 GSKSIKFLKRTLSFTD-------TTAIPKGYLAVSVGKEEKRYKIPTEYLSHQAFHVLLR 113

Query:   102 EAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFM--QDCRFNI--DDTKGYCS-S 156
             EAEEEFGF+Q G+LRIPCEVAVFESILK++E  K   ++  Q+CRFN   ++   Y   S
Sbjct:   114 EAEEEFGFEQAGILRIPCEVAVFESILKIMEDNKSDAYLTTQECRFNATSEEVMSYRHPS 173

Query:   157 EYQQTPSHHPQSPMCR 172
             +  +TPSH P SPMCR
Sbjct:   174 DCPRTPSHQPHSPMCR 189

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 60/143 (41%), Positives = 79/143 (55%)

Query:     5 KSNKIREIVRLQQILRKWRKLAXXXXXXXXXXXXXXXXXXXIKFL-KRTLSLS--DNPLH 61
             K   I++IVRL++IL+KW+ +                       + KR L L   D+   
Sbjct:     8 KLTGIKQIVRLKEILQKWQTVTIGSKSDDGELGARKHTAIISPVINKRLLDLKTCDSDEE 67

Query:    62 NASTST-----VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLR 116
                 S      VPKGYLAV VG EL+RFIIPT++LSH  F +LL +AEEE+GF  +G L 
Sbjct:    68 TTCQSPEPPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALT 127

Query:   117 IPCEVAVFESILKMVEQ--KKDT 137
             IPCEV  F+ +LK +E   K DT
Sbjct:   128 IPCEVETFKYLLKCIENHPKDDT 150

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 60/141 (42%), Positives = 77/141 (54%)

Query:     5 KSNKIREIVRLQQILRKWRKLAXXXXXXXXXXXXXXXXXXXIK--FLKRTLSLSDNPLHN 62
             K   IR+IVRL++IL+KW+ +                    I     KR L + +     
Sbjct:     8 KLTGIRQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAVAMISPAINKRLLDVKNGDSDE 67

Query:    63 ASTST------VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLR 116
              +  +      VPKG LAV VG EL+RFIIPT YLSH  F +LL +AEEEFGF Q+G L 
Sbjct:    68 ETCQSPEPPHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALT 127

Query:   117 IPCEVAVFESILKMVEQK-KD 136
             IPCEV  F+ +LK +E   KD
Sbjct:   128 IPCEVETFKYLLKCMENNLKD 148

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2035444 AT1G19840 "AT1G19840" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 36/90 (40%), Positives = 51/90 (56%)

Query:    66 STVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFE 125
             S VP G++AVCVG   +RF++   YL+H     LL +AEEEFGF   G L IPCE +VFE
Sbjct:    39 SDVPSGHVAVCVGSGCRRFVVRASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESVFE 98

Query:   126 SILKMVEQKKDTFFMQDCRFNIDDTKGYCS 155
               ++ + +   +   +  RF   D    C+
Sbjct:    99 EAIRFISRSDSS---RSSRFTCPDDLQKCN 125

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 37/90 (41%), Positives = 51/90 (56%)

Query:    66 STVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFE 125
             S VP G++AV VG   +RF++   YL+H     LL +AEEEFGF   G L IPCE +VFE
Sbjct:    40 SDVPSGHVAVYVGSSCRRFVVRATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFE 99

Query:   126 SILKMVEQKKDTFFMQDCRFNI-DDTKGYC 154
               ++ + +   T   +  RF   DD +  C
Sbjct:   100 ESIRFISRSDST---RSRRFTCPDDFQKNC 126

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139569 AT4G34750 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 32/71 (45%), Positives = 47/71 (66%)

Query:    61 HNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCE 120
             +N   S VP G++AV VGE  +R+++   +L+H  F  LL EAEEE+GF   G L IPC+
Sbjct:    30 NNDPVSDVPPGHVAVSVGENRRRYVVRAKHLNHPIFRRLLAEAEEEYGFANVGPLAIPCD 89

Query:   121 VAVFESILKMV 131
              ++FE I+ +V
Sbjct:    90 ESLFEDIIAIV 100

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2183805 AT5G10990 "AT5G10990" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 33/81 (40%), Positives = 46/81 (56%)

Query:    66 STVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFE 125
             S VP G++AV VG   +RF++   YL+H     LL +AEEEFGF   G L IPCE +VFE
Sbjct:    39 SDVPSGHVAVYVGRSCRRFVVLATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFE 98

Query:   126 SILKMVEQKKDTFFMQDCRFN 146
               ++ + +        D + N
Sbjct:    99 ESIRFITRSSRFTCTDDLKKN 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141786 AT4G38860 "AT4G38860" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:    47 KFLKRTLSLSDNPLHNAS--TSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAE 104
             + LKR  SL     ++       VPKG+  V VGE+  R+I+P  +L+H  F ILL++AE
Sbjct:    17 QILKRCSSLGKKQCYDEEGLPLDVPKGHFPVYVGEKRTRYIVPISFLTHPEFLILLQQAE 76

Query:   105 EEFGFQQT-GVLRIPCEVAVFESILKMV 131
             EEFGF+   G L IPCE  VF S+  M+
Sbjct:    77 EEFGFRHDMGGLTIPCEEVVFLSLTSMI 104

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
 Identities = 32/70 (45%), Positives = 43/70 (61%)

Query:    62 NASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEV 121
             N S   VPKG+  V VGE   R+++P  +L+   F +LL++AEEEFGF     L IPCE 
Sbjct:    38 NGSPLNVPKGHFVVYVGENRVRYVVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEE 97

Query:   122 AVFESILKMV 131
              VF S+  M+
Sbjct:    98 VVFRSLTSML 107

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	9e-34
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-19
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-12
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	6e-11
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	0.002

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  114 bits (288), Expect = 9e-34
 Identities = 40/70 (57%), Positives = 51/70 (72%)

Query: 63  ASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVA 122
           +S++ VPKG+ AV VGEE +RF++P  YL+H  F  LL  AEEEFGF Q G L IPC+V 
Sbjct: 30  SSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVV 89

Query: 123 VFESILKMVE 132
           VFE +L M+E
Sbjct: 90  VFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 77.9 bits (192), Expect = 2e-19
 Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 28/131 (21%)

Query: 1   MESKKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPL 60
           M  KKSNK+ +   L+QIL++         +S G     +                    
Sbjct: 1   MAIKKSNKLTQTAMLKQILKRC--------SSLGKKQGYD-------------------- 32

Query: 61  HNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCE 120
            +     VPKG+  V VGE   R+I+P  +L+H  F  LL++AEEEFGF     L IPCE
Sbjct: 33  EDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCE 92

Query: 121 VAVFESILKMV 131
             VF S+  M+
Sbjct: 93  EVVFRSLTSMI 103

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 60.9 bits (147), Expect = 1e-12
 Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 7/90 (7%)

Query: 40  NSASKSIKFLKRTLSLSDNPLHNASTSTVPKGYLAVCVGEEL----KRFIIPTDYLSHQA 95
           ++A+K I  LK     + N   ++S+  VPKG++AV VGE++    KRF++P  +L+H +
Sbjct: 9   SNATKQI--LKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPS 66

Query: 96  FHILLREAEEEFGFQQ-TGVLRIPCEVAVF 124
           F   L  AEEEFGF    G L IPC   VF
Sbjct: 67  FKEFLSRAEEEFGFNHPMGGLTIPCREEVF 96

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 56.3 bits (135), Expect = 6e-11
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 56  SDNPLHNASTS-TVPKGYLAVCVGEEL--KRFIIPTDYLSHQAFHILLREAEEEFGFQQT 112
           S +P  + +TS  VPKG++AV VGE++  KRF++P  YL+H  F   L  AEEE GF  +
Sbjct: 26  SSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHS 85

Query: 113 -GVLRIPCEVAVF 124
            G L IPC    F
Sbjct: 86  MGGLTIPCREESF 98

Length = 108

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 58   NPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEE---EFGFQQTGV 114
            N L +     VP+  L  C+G+EL  F++P      +A+  L RE EE   + G    G+
Sbjct: 1206 NELMDLVYHHVPEAKLVECIGQELI-FLLPNKNFKQRAYASLFRELEETLADLGLSSFGI 1264

Query: 115  LRIPCEVAVFESILKMVE 132
               P E    E  LK+ E
Sbjct: 1265 SDTPLE----EIFLKVTE 1278

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	84.27
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	81.29
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	80.44

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=8.5e-43  Score=264.50  Aligned_cols=103  Identities=42%  Similarity=0.683  Sum_probs=92.5

Q ss_pred             CCCccccchhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcchhhhhhhhcccccCCCCCCCCCCCCCCceEEEEeccc
Q 048575            1 MESKKSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPLHNASTSTVPKGYLAVCVGEE   80 (172)
Q Consensus         1 ~~~~k~~ki~~i~rL~qilKKWq~~a~~~r~~~~~~~~~~~~s~s~~~~~r~is~~~~~~~~~ss~~vpkG~~~VYVG~e   80 (172)
                      |+++|++||+||++|+||+|||++++..+...                         . +  ..+.++|+||||||||++
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~-------------------------~-~--~~~~~vpkG~~aVyVG~~   52 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYD-------------------------E-D--GLPLDVPKGHFPVYVGEN   52 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcc-------------------------c-c--cCCCCCCCCcEEEEECCC
Confidence            89999999999999999999999886543210                         0 0  134578999999999999


Q ss_pred             ceeEEEccCCCChHHHHHHHHHHHHhcCcccCCceEecCcHHHHHHHHHHH
Q 048575           81 LKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMV  131 (172)
Q Consensus        81 ~~RFvVp~~yLnhP~F~~LL~~aeEEfG~~~~G~L~iPCd~~~Fe~vl~~l  131 (172)
                      ++||+||++|||||+|++||++|||||||.++|+|+||||+++|++++|+|
T Consensus        53 ~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         53 RSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=5.3e-35  Score=219.83  Aligned_cols=67  Identities=57%  Similarity=1.012  Sum_probs=65.4

Q ss_pred             CCCCCceEEEEecccceeEEEccCCCChHHHHHHHHHHHHhcCcccCCceEecCcHHHHHHHHHHHh
Q 048575           66 STVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVE  132 (172)
Q Consensus        66 ~~vpkG~~~VYVG~e~~RFvVp~~yLnhP~F~~LL~~aeEEfG~~~~G~L~iPCd~~~Fe~vl~~l~  132 (172)
                      ..+|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+||||+++|+++||+||
T Consensus        34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999999999999999999999999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1e-33  Score=214.88  Aligned_cols=64  Identities=50%  Similarity=0.909  Sum_probs=60.7

Q ss_pred             CCCCCceEEEEecc----cceeEEEccCCCChHHHHHHHHHHHHhcCccc-CCceEecCcHHHHHHHHH
Q 048575           66 STVPKGYLAVCVGE----ELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFESILK  129 (172)
Q Consensus        66 ~~vpkG~~~VYVG~----e~~RFvVp~~yLnhP~F~~LL~~aeEEfG~~~-~G~L~iPCd~~~Fe~vl~  129 (172)
                      .+|||||||||||+    +++||+||++|||||+|++||++|||||||.+ +|+|+||||++.|++++.
T Consensus        33 ~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         33 DHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             CCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            47999999999997    58999999999999999999999999999998 699999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=7.6e-31  Score=200.10  Aligned_cols=66  Identities=47%  Similarity=0.821  Sum_probs=62.1

Q ss_pred             CCCCCCceEEEEecc--cceeEEEccCCCChHHHHHHHHHHHHhcCccc-CCceEecCcHHHHHHHHHH
Q 048575           65 TSTVPKGYLAVCVGE--ELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFESILKM  130 (172)
Q Consensus        65 s~~vpkG~~~VYVG~--e~~RFvVp~~yLnhP~F~~LL~~aeEEfG~~~-~G~L~iPCd~~~Fe~vl~~  130 (172)
                      +..+||||||||||+  |++||+||++|||||+|++||++|||||||.+ +|+|+||||++.|++||..
T Consensus        36 ~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         36 SGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            457999999999996  59999999999999999999999999999997 6999999999999999874

>PRK02899 adaptor protein; Provisional

Probab=84.27  E-value=0.94  Score=37.78  Aligned_cols=25  Identities=36%  Similarity=0.764  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHhcCcccCCceEe
Q 048575           93 HQAFHILLREAEEEFGFQQTGVLRI  117 (172)
Q Consensus        93 hP~F~~LL~~aeEEfG~~~~G~L~i  117 (172)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4578888999999999999999985

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=81.29  E-value=0.84  Score=32.46  Aligned_cols=55  Identities=16%  Similarity=0.105  Sum_probs=40.6

Q ss_pred             cceeEEEccCCCC-h--HHHHHHHHHHHHhcCcccCCceEecCcHHHHHHHHHHHhcc
Q 048575           80 ELKRFIIPTDYLS-H--QAFHILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQK  134 (172)
Q Consensus        80 e~~RFvVp~~yLn-h--P~F~~LL~~aeEEfG~~~~G~L~iPCd~~~Fe~vl~~l~~~  134 (172)
                      .+++|.++.+-|. +  ..|..|+........-..+|.+-|-++...|++||..++.+
T Consensus         6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            4678888887665 3  47777777542222333479999999999999999999995

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>smart00666 PB1 PB1 domain

Probab=80.44  E-value=3.8  Score=28.25  Aligned_cols=52  Identities=19%  Similarity=0.471  Sum_probs=39.2

Q ss_pred             ecccceeEEEccCCCChHHHHHHHHHHHHhcCcc----------cCC-ceEecCcHHHHHHHHHHHhc
Q 048575           77 VGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQ----------QTG-VLRIPCEVAVFESILKMVEQ  133 (172)
Q Consensus        77 VG~e~~RFvVp~~yLnhP~F~~LL~~aeEEfG~~----------~~G-~L~iPCd~~~Fe~vl~~l~~  133 (172)
                      -|.+.+||.||-    ..-|.+|..+..+.|++.          .+| .++|.+|.+ ++.++.+...
T Consensus         8 ~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~D-l~~a~~~~~~   70 (81)
T smart00666        8 YGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDED-LEEAIEEYDS   70 (81)
T ss_pred             ECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHH-HHHHHHHHHH
Confidence            378999999986    566999999999999885          134 788999775 4456666654

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00