Citrus Sinensis ID: 048576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
NSDVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNNGSSKLDDWIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEcccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccEEEEEcccccccccccccccccccccEEEccccccEEEEccccEEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
nsdvfdhdliclppcfrkvaghrlSINIIaeidlfkfepwelpskalfgdyewyffcpmdrknpeasepnrvirvgywedagsgtdkiitTAGRKVVGIKNALVFHvgnapngtktnWIMHEyrlfepppnngssklddwil
Flexible Loop (DISEMBL)
nsdvfdhdliCLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRknpeasepnRVIRVgywedagsgtdKIITTAGRKVVGIKNALVFhvgnapngtKTNWIMHEYRlfepppnngssklddwil
Low Complexity Region (SEG)
NSDVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNNGSSKLDDWIL
Disordered region (IsUnstruct)
***VFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMD**********RVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLF****************
Disordered Region (DISOPRED)
**DVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYR***********KLDDWIL
Disordered Region (DISEMBL)
NSDVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNN**********
Disordered Region (DISPRO)
*SDVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEP********L*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NSDVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNNGSSKLDDWIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9LDY8	317	NAC domain-containing pro	yes	no	0.936	0.419	0.642	8e-46
Q9C932	317	NAC domain-containing pro	no	no	0.936	0.419	0.627	2e-44
Q93VY3	297	NAC domain-containing pro	no	no	0.936	0.447	0.627	5e-44
D2SMN4	406	NAC transcription factor	N/A	no	0.908	0.317	0.481	1e-34
Q52QH4	318	NAC domain-containing pro	yes	no	0.943	0.421	0.528	2e-34
A0SPJ9	402	NAC transcription factor	N/A	no	0.887	0.313	0.5	3e-34
A2YMR0	425	NAC transcription factor	N/A	no	0.873	0.291	0.5	6e-34
Q8H4S4	425	NAC transcription factor	no	no	0.873	0.291	0.5	6e-34
A0SPJ6	396	NAC transcription factor	N/A	no	0.887	0.318	0.492	9e-34
A0SPJ8	406	NAC transcription factor	N/A	no	0.908	0.317	0.475	1e-33

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score =  182 bits (461), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 104/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AGH  S+ +IAEIDL+KF+PW LPSKALFG+ EWYFF P DRK P 
Sbjct: 24  DEELMVEYLC-RKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+I+T GR+ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKVISTEGRR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 140 IEPSRRNGSTKLDDWVL 156

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 104/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWYFF P DRK P 
Sbjct: 24  DEELMVQYLC-RKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDKII+T G++ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 140 IEPSRRNGSTKLDDWVL 156

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  176 bits (445), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 103/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVAG+  S+ +I +IDL+KF+PW+LPSKALFG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-RKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDKIIT  GR+ VGIK ALVF+ G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKIITADGRR-VGIKKALVFYAGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            E   ++GSSKLDDW+L
Sbjct: 140 IEHSRSHGSSKLDDWVL 156

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 94/166 (56%), Gaps = 37/166 (22%)

Query: 12  LPPCFR---------------KVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFF 56
           LPP FR               K A   L + IIAE+DL+KF+PWELP KA FG++EWYFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 57  CPMDRKNPEASEPNRVIRVGYWEDAGSGTDKII----TTAGRKVVGIKNALVFHVGNAPN 112
            P DRK P  + PNR    GYW+   +GTDK I    T  GR+ VG+K ALVF+ G  P 
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWK--ATGTDKPILASATGCGREKVGVKKALVFYRGKPPR 152

Query: 113 GTKTNWIMHEYRLF----------EPPPNNGSS------KLDDWIL 142
           G KTNWIMHEYRL            PPP  G S      +LDDW+L
Sbjct: 153 GLKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVL 198

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 8/142 (5%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVA   L + IIAE+DL+K +PW+LP KALFG  EWYFF P DRK P 
Sbjct: 31  DEELVVHYLC-RKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKEWYFFTPRDRKYPN 89

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGR-KVVGIKNALVFHVGNAPNGTKTNWIMHEYR 124
            S PNR    GYW+   +G DK +   G  + VGIK ALVF+ G AP G KT+WIMHEYR
Sbjct: 90  GSRPNRAAGRGYWK--ATGADKPVAPKGSARTVGIKKALVFYSGKAPRGVKTDWIMHEYR 147

Query: 125 LFE----PPPNNGSSKLDDWIL 142
           L +    P    GS KLD+W+L
Sbjct: 148 LADADRAPGGKKGSQKLDEWVL 169

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 87/140 (62%), Gaps = 14/140 (10%)

Query: 17  RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
           +K A   L + IIAE+DL+KF+PWELP KA FG+ EWYFF P DRK P  + PNR    G
Sbjct: 48  KKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSG 107

Query: 77  YWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFE--------- 127
           YW+  G+    + +  GR+ VG+K ALVF+ G  P G KTNWIMHEYRL +         
Sbjct: 108 YWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKGLKTNWIMHEYRLTDASSSAATSR 167

Query: 128 PPPNNGSS-----KLDDWIL 142
           PPP  G S     +LDDW+L
Sbjct: 168 PPPVTGGSRAASLRLDDWVL 187

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 90/148 (60%), Gaps = 24/148 (16%)

Query: 17  RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
           +K A   L + IIAE+DL+KF+PWELP KA FG+ EWYFF P DRK P  + PNR    G
Sbjct: 49  KKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSG 108

Query: 77  YWEDAGSGTDKIITTAG--RKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFE------- 127
           YW+   +GTDK I  +G  R+ VG+K ALVF+ G  P G KTNWIMHEYRL +       
Sbjct: 109 YWK--ATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGVKTNWIMHEYRLTDTSSSAAA 166

Query: 128 -------PPPNNGSS------KLDDWIL 142
                  PPP  G S      +LDDW+L
Sbjct: 167 VATTRQPPPPITGGSRGAVSLRLDDWVL 194

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 91/148 (61%), Gaps = 24/148 (16%)

Query: 17  RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
           +K A   L + IIAE+DL+KF+PW+LP KA FG+ EWYFF P DRK P  + PNR    G
Sbjct: 49  KKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSG 108

Query: 77  YWEDAGSGTDKIITTAG--RKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFE------- 127
           YW+   +GTDK I ++G  R+ VG+K ALVF+ G  P G KTNWIMHEYRL +       
Sbjct: 109 YWK--ATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGVKTNWIMHEYRLTDTSSSAAA 166

Query: 128 -------PPPNNGSSK------LDDWIL 142
                  PPP  G SK      LDDW+L
Sbjct: 167 VATTRRPPPPITGGSKGAVSLRLDDWVL 194

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 86/140 (61%), Gaps = 14/140 (10%)

Query: 17  RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
           +K A   L + II E+DL+KF+PWELP KA FG+ EWYFF P DRK P  + PNR    G
Sbjct: 48  KKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSG 107

Query: 77  YWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFE--------- 127
           YW+  G+    + +  GR+ VG+K ALVF+ G  P G KTNWIMHEYRL +         
Sbjct: 108 YWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKGLKTNWIMHEYRLTDASSSATTSR 167

Query: 128 PPPNNGSS-----KLDDWIL 142
           PPP  G S     +LDDW+L
Sbjct: 168 PPPVTGGSRSASLRLDDWVL 187

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 93/166 (56%), Gaps = 37/166 (22%)

Query: 12  LPPCFR---------------KVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFF 56
           LPP FR               K A   L + IIAE+DL+KF+PWELP KA FG++EWYFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 57  CPMDRKNPEASEPNRVIRVGYWEDAGSGTDKII----TTAGRKVVGIKNALVFHVGNAPN 112
            P DRK    + PNR    GYW+   +GTDK I    T  GR+ VG+K ALVF+ G  P 
Sbjct: 95  SPRDRKYANGARPNRAATSGYWK--ATGTDKPILASATGCGREKVGVKKALVFYRGKPPR 152

Query: 113 GTKTNWIMHEYRLF----------EPPPNNGSS------KLDDWIL 142
           G KTNWIMHEYRL            PPP  G S      +LDDW+L
Sbjct: 153 GLKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVL 198

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
255586554	337	NAC domain-containing protein, putative	0.936	0.394	0.656	7e-45
206584345	346	NAC domain protein NAC4 [Gossypium hirsu	0.936	0.384	0.671	1e-44
15232604	317	NAC domain-containing protein 55 [Arabid	0.936	0.419	0.642	6e-44
297830130	317	ATNAC3 [Arabidopsis lyrata subsp. lyrata	0.936	0.419	0.642	6e-44
302399005	336	NAC domain class transcription factor [M	0.936	0.395	0.642	2e-43
21536744	317	putative jasmonic acid regulatory protei	0.936	0.419	0.635	2e-43
306489779	349	NAC transcription factor [Arachis hypoga	0.936	0.381	0.642	3e-43
209171097	349	NAC-like transcription factor [Arachis h	0.936	0.381	0.642	3e-43
225461361	333	PREDICTED: NAC domain-containing protein	0.936	0.399	0.656	3e-43
118486672	233	unknown [Populus trichocarpa]	0.936	0.570	0.627	8e-43

>gi|255586554|ref|XP_002533913.1| NAC domain-containing protein, putative [Ricinus communis] gi|223526123|gb|EEF28468.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 104/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVAGH+ S+ II EIDL+KF+PW LPSKA+FG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-RKVAGHQFSLQIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+ITT GRK VGIK ALVF+VG AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKVITTEGRK-VGIKKALVFYVGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            E    NGS+KLDDW+L
Sbjct: 140 LESSRKNGSTKLDDWVL 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206584345|gb|ACI15345.1| NAC domain protein NAC4 [Gossypium hirsutum] gi|206584355|gb|ACI15350.1| NAC domain protein NAC4 [Gossypium hirsutum]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 103/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVAGH  S+ II EIDL+KF PW+LPSKALFG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-RKVAGHHFSLQIIGEIDLYKFNPWDLPSKALFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDKIITT GRK VGIK ALVF+VG AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKIITTEGRK-VGIKKALVFYVGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            E    +GSSKLDDW+L
Sbjct: 140 IETSRKSGSSKLDDWVL 156

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232604|ref|NP_188169.1| NAC domain-containing protein 55 [Arabidopsis thaliana] gi|75273159|sp|Q9LDY8.1|NAC55_ARATH RecName: Full=NAC domain-containing protein 55; Short=ANAC055; AltName: Full=NAC domain-containing protein 3; Short=AtNAC3 gi|7021735|gb|AAF35416.1| putative jasmonic acid regulatory protein [Arabidopsis thaliana] gi|12060424|dbj|BAB20599.1| AtNAC3 [Arabidopsis thaliana] gi|15795115|dbj|BAB02379.1| jasmonic acid regulatory protein-like [Arabidopsis thaliana] gi|105830298|gb|ABF74720.1| At3g15500 [Arabidopsis thaliana] gi|332642162|gb|AEE75683.1| NAC domain-containing protein 55 [Arabidopsis thaliana]

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 104/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AGH  S+ +IAEIDL+KF+PW LPSKALFG+ EWYFF P DRK P 
Sbjct: 24  DEELMVEYLC-RKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+I+T GR+ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKVISTEGRR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 140 IEPSRRNGSTKLDDWVL 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830130|ref|XP_002882947.1| ATNAC3 [Arabidopsis lyrata subsp. lyrata] gi|297328787|gb|EFH59206.1| ATNAC3 [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 104/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AGH  S+ +IAEIDL+KF+PW LPSKALFG+ EWYFF P DRK P 
Sbjct: 24  DEELMVEYLC-RKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+I+T GR+ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKVISTEGRR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 140 IEPSRRNGSTKLDDWVL 156

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399005|gb|ADL36797.1| NAC domain class transcription factor [Malus x domestica]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVAG++ ++ IIAEIDL+KF+PW LPSKA+FG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-RKVAGYQFNLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+ITT G+K VGIK ALVF+VG AP G KTNWIMHEYRL
Sbjct: 83  GSRPNRVAGTGYWK--ATGTDKVITTEGKK-VGIKKALVFYVGKAPKGIKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGSSKLD+W+L
Sbjct: 140 IEPSRKNGSSKLDEWVL 156

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536744|gb|AAM61076.1| putative jasmonic acid regulatory protein [Arabidopsis thaliana]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 103/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AGH  S+ +IAEIDL+KF+PW LPSKALFG+ EWYFF P DRK P 
Sbjct: 24  DEELMVEYLC-RKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+I+T GR+ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKVISTEGRR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+ LDDW+L
Sbjct: 140 IEPSRRNGSTNLDDWVL 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|306489779|gb|ADM94307.1| NAC transcription factor [Arachis hypogaea]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 102/137 (74%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVAGH  S+ II EIDL+KF+PW LPSKA+FG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-RKVAGHHFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK ITT GRK VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKTITTEGRK-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            +    NGS+KLDDW+L
Sbjct: 140 LDSTRKNGSTKLDDWVL 156

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209171097|gb|ACI42833.1| NAC-like transcription factor [Arachis hypogaea]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 102/137 (74%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVAGH  S+ II EIDL+KF+PW LPSKA+FG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-RKVAGHHFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK ITT GRK VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKTITTEGRK-VGIKEALVFYIGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            +    NGS+KLDDW+L
Sbjct: 140 LDSTRKNGSTKLDDWVL 156

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461361|ref|XP_002284668.1| PREDICTED: NAC domain-containing protein 72 [Vitis vinifera] gi|302143055|emb|CBI20350.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 102/137 (74%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RKVAG   S+ II EIDL+KF+PW LPSKA+FG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-RKVAGQGFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+ITT GRK VGIK ALVF+VG AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKVITTEGRK-VGIKKALVFYVGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            E    NGSSKLDDW+L
Sbjct: 140 LENSRKNGSSKLDDWVL 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486672|gb|ABK95173.1| unknown [Populus trichocarpa]

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 102/137 (74%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C +KVAGH  S+ II EIDL+KF+PW LP KA+FG+ EWYFF P DRK P 
Sbjct: 24  DEELLVQYLC-KKVAGHHFSLQIIGEIDLYKFDPWFLPGKAIFGEKEWYFFSPRDRKYPN 82

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDK+ITT GRK VGIK ALVF+VG AP GTKTNWIMHEYRL
Sbjct: 83  GSRPNRVAGSGYWK--ATGTDKVITTEGRK-VGIKKALVFYVGKAPKGTKTNWIMHEYRL 139

Query: 126 FEPPPNNGSSKLDDWIL 142
            E    +GS+KLD+W+L
Sbjct: 140 LESSRKSGSTKLDEWVL 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.936	0.419	0.642	9.1e-45
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.936	0.419	0.627	1.3e-43
TAIR|locus:2124014	314	RD26 "RESPONSIVE TO DESICCATIO	0.936	0.423	0.558	6.1e-39
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.873	0.340	0.521	5.8e-34
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.929	0.456	0.517	1.4e-32
TAIR|locus:504956335	283	ATAF2 [Arabidopsis thaliana (t	0.922	0.462	0.510	2.3e-32
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.922	0.517	0.503	3.7e-32
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.823	0.362	0.534	4.7e-32
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.873	0.387	0.510	6e-32
TAIR|locus:2160634	312	NAC102 "NAC domain containing	0.922	0.419	0.496	1.6e-31

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 88/137 (64%), Positives = 104/137 (75%)

Query:     6 DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
             D +L+    C RK AGH  S+ +IAEIDL+KF+PW LPSKALFG+ EWYFF P DRK P 
Sbjct:    24 DEELMVEYLC-RKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPN 82

Query:    66 ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
              S PNRV   GYW+   +GTDK+I+T GR+V GIK ALVF++G AP GTKTNWIMHEYRL
Sbjct:    83 GSRPNRVAGSGYWK--ATGTDKVISTEGRRV-GIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query:   126 FEPPPNNGSSKLDDWIL 142
              EP   NGS+KLDDW+L
Sbjct:   140 IEPSRRNGSTKLDDWVL 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 86/137 (62%), Positives = 104/137 (75%)

Query:     6 DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
             D +L+    C RK AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWYFF P DRK P 
Sbjct:    24 DEELMVQYLC-RKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 82

Query:    66 ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
              S PNRV   GYW+   +GTDKII+T G++V GIK ALVF++G AP GTKTNWIMHEYRL
Sbjct:    83 GSRPNRVAGSGYWK--ATGTDKIISTEGQRV-GIKKALVFYIGKAPKGTKTNWIMHEYRL 139

Query:   126 FEPPPNNGSSKLDDWIL 142
              EP   NGS+KLDDW+L
Sbjct:   140 IEPSRRNGSTKLDDWVL 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2124014 RD26 "RESPONSIVE TO DESICCATION 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 86/154 (55%), Positives = 103/154 (66%)

Query:     6 DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSK-----------------ALF 48
             D +L+    C RKVAG+  S+ +I +IDL+KF+PW+LPSK                 ALF
Sbjct:    24 DEELLVQYLC-RKVAGYHFSLQVIGDIDLYKFDPWDLPSKQTCFTFVGEYNCNYLGKALF 82

Query:    49 GDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVG 108
             G+ EWYFF P DRK P  S PNRV   GYW+   +GTDKIIT  GR+V GIK ALVF+ G
Sbjct:    83 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIITADGRRV-GIKKALVFYAG 139

Query:   109 NAPNGTKTNWIMHEYRLFEPPPNNGSSKLDDWIL 142
              AP GTKTNWIMHEYRL E   ++GSSKLDDW+L
Sbjct:   140 KAPKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVL 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 72/138 (52%), Positives = 91/138 (65%)

Query:    17 RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
             RK A   L + IIAE+DL+KF+PWELP+KA FG+ EWYFF P DRK P  + PNR    G
Sbjct:    37 RKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSG 96

Query:    77 YWEDAGSGTDK-IITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNN--- 132
             YW+   +GTDK ++ + G + VG+K ALVF+ G  P G K++WIMHEYRL E  PNN   
Sbjct:    97 YWK--ATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRLIENKPNNRPP 154

Query:   133 ----GSSK----LDDWIL 142
                 G+ K    LDDW+L
Sbjct:   155 GCDFGNKKNSLRLDDWVL 172

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 73/141 (51%), Positives = 90/141 (63%)

Query:     6 DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
             D +L+    C RK A   +++ IIAEIDL+K++PWELP  AL+G+ EWYFF P DRK P 
Sbjct:    17 DEELVMHYLC-RKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPN 75

Query:    66 ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
              S PNR    GYW+   +G DK I     K VGIK ALVF+ G AP G KTNWIMHEYRL
Sbjct:    76 GSRPNRSAGSGYWK--ATGADKPIGLP--KPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 131

Query:   126 FEPPPN----NGSSKLDDWIL 142
              +   +      S +LDDW+L
Sbjct:   132 ADVDRSVRKKKNSLRLDDWVL 152

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:504956335 ATAF2 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 73/143 (51%), Positives = 90/143 (62%)

Query:     6 DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
             D +L+    C RK A  ++S  +IAEIDL+KF PWELP  +L+G+ EWYFF P DRK P 
Sbjct:    17 DEELVKFYLC-RKCASEQISAPVIAEIDLYKFNPWELPEMSLYGEKEWYFFSPRDRKYPN 75

Query:    66 ASEPNRVIRVGYWEDAGSGTDKIITTAGR-KVVGIKNALVFHVGNAPNGTKTNWIMHEYR 124
              S PNR    GYW+   +G DK I   G+ K +GIK ALVF+ G AP G KTNWIMHEYR
Sbjct:    76 GSRPNRAAGTGYWK--ATGADKPI---GKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYR 130

Query:   125 LFEPPPNNGSSK-----LDDWIL 142
             L     +   +K     LDDW+L
Sbjct:   131 LANVDRSASVNKKNNLRLDDWVL 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009620 "response to fungus" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0043424 "protein histidine kinase binding" evidence=IPI

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 71/141 (50%), Positives = 90/141 (63%)

Query:     6 DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
             D +L+ +  C RK A   +   II E+DL++++PW+LP  AL+G+ EWYFF P DRK P 
Sbjct:    20 DEELVLMYLC-RKCASQPIPAPIITELDLYRYDPWDLPDMALYGEKEWYFFSPRDRKYPN 78

Query:    66 ASEPNRVIRVGYWEDAGSGTDKIITTAGR-KVVGIKNALVFHVGNAPNGTKTNWIMHEYR 124
              S PNR    GYW+   +G DK I   GR K VGIK ALVF+ G  PNG KTNWIMHEYR
Sbjct:    79 GSRPNRAAGTGYWK--ATGADKPI---GRPKPVGIKKALVFYSGKPPNGEKTNWIMHEYR 133

Query:   125 LFEPPPN---NGSSKLDDWIL 142
             L +   +     S +LDDW+L
Sbjct:   134 LADVDRSVRKKNSLRLDDWVL 154

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/131 (53%), Positives = 85/131 (64%)

Query:    24 LSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGS 83
             L ++IIAEIDL+KF+PWELPSKA FG++EWYFF P DRK P    PNR    GYW+   +
Sbjct:    43 LPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWK--AT 100

Query:    84 GTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFE-------PPPN----- 131
             GTDK I T     VG+K ALVF+ G  P G KT+WIMHEYRL +        PP+     
Sbjct:   101 GTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTR 160

Query:   132 NGSSKLDDWIL 142
               S +LDDW+L
Sbjct:   161 KNSLRLDDWVL 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 70/137 (51%), Positives = 90/137 (65%)

Query:    17 RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
             RK     L + IIA++DL+KF+PWELP+KA FG+ EWYFF P DRK P  + PNR    G
Sbjct:    37 RKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSG 96

Query:    77 YWEDAGSGTDK-IITTAG--RKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNN- 132
             YW+   +GTDK +I+T G   K VG+K ALVF+ G  P G K++WIMHEYRL +  P + 
Sbjct:    97 YWK--ATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGVKSDWIMHEYRLTDNKPTHI 154

Query:   133 ---GSSK----LDDWIL 142
                G+ K    LDDW+L
Sbjct:   155 CDFGNKKNSLRLDDWVL 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2160634 NAC102 "NAC domain containing protein 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 71/143 (49%), Positives = 90/143 (62%)

Query:     6 DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
             D +L+    C R+ A   +++ +IAEIDL+KF PWELP  AL+G+ EWYFF   DRK P 
Sbjct:    60 DEELVKFYLC-RRCASEPINVPVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPN 118

Query:    66 ASEPNRVIRVGYWEDAGSGTDKIITTAGR-KVVGIKNALVFHVGNAPNGTKTNWIMHEYR 124
              S PNR    GYW+   +G DK I   G+ K +GIK ALVF+ G AP G KTNWIMHEYR
Sbjct:   119 GSRPNRAAGTGYWK--ATGADKPI---GKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYR 173

Query:   125 LFEPPPNNGSSK-----LDDWIL 142
             L     +  ++K     LDDW+L
Sbjct:   174 LANVDRSASTNKKNNLRLDDWVL 196

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	9e-47

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  147 bits (373), Expect = 9e-47
 Identities = 63/132 (47%), Positives = 79/132 (59%), Gaps = 19/132 (14%)

Query: 12  LPPCFR---------------KVAGHRLSI-NIIAEIDLFKFEPWELP-SKALFGDYEWY 54
           LPP FR               KV G  L + ++I E+D++KFEPW+LP  KA  GD EWY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 55  FFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGT 114
           FF P DRK P  S  NR    GYW+   +G DK + + G +VVG+K  LVF+ G AP G 
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWK--ATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGE 118

Query: 115 KTNWIMHEYRLF 126
           KT+W+MHEYRL 
Sbjct: 119 KTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.9e-39  Score=231.75  Aligned_cols=120  Identities=45%  Similarity=0.863  Sum_probs=91.1

Q ss_pred             ccCCceecCCCccceecCCCCCC-CceeeccCCCCCCCCCCCcccCCCceEEEEeecCCCCCCCCCCeeeceecEEeeCC
Q 048576            4 VFDHDLICLPPCFRKVAGHRLSI-NIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAG   82 (142)
Q Consensus         4 ~~D~eli~~~yl~rKi~g~plp~-~~I~e~Dvy~~~PweL~~~~~~~~~~wyFFs~~~~~~~~g~r~~R~~~~G~Wk~~~   82 (142)
                      -||+|||.+ ||.+||.|.++|. ++|.++|||++|||+|+.....++++||||+++.+++.++.|++|++++|+||+  
T Consensus         9 PtD~ELi~~-yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~G~Wk~--   85 (129)
T PF02365_consen    9 PTDEELINH-YLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGGGYWKS--   85 (129)
T ss_dssp             --HHHHHHC-THHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETTEEEEE--
T ss_pred             CChHHHHHH-HHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccceEEee--
Confidence            489999999 9999999999998 799999999999999995333357799999999999999999999999999999  


Q ss_pred             CCCceEEeCCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeC
Q 048576           83 SGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLF  126 (142)
Q Consensus        83 ~G~~~~I~~~~~~vvG~Kk~l~fy~~~~~~~~kt~W~M~EY~l~  126 (142)
                      +|+++.|...++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        86 ~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   86 TGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999998767788999999999998888899999999999983

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-45
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-45
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		6e-34

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  176 bits (447), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 104/137 (75%), Gaps = 4/137 (2%)
Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWYFF P DRK P 
Sbjct: 27  DEELMVQYLC-RKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 85
Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDKII+T G++ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 86  GSRPNRVAGSGYWK--ATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 142
Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 143 IEPSRRNGSTKLDDWVL 159

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  176 bits (447), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 104/137 (75%), Gaps = 4/137 (2%)
Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWYFF P DRK P 
Sbjct: 30  DEELMVQYLC-RKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 88
Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDKII+T G++ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 89  GSRPNRVAGSGYWK--ATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 145
Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 146 IEPSRRNGSTKLDDWVL 162

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  139 bits (350), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 86/131 (65%), Gaps = 8/131 (6%)
Query: 17  RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
           RK AG RL + IIAE+DL+KF+PW+LP +ALFG  EWYFF P DRK P  S PNR    G
Sbjct: 35  RKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNG 94
Query: 77  YWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL-----FEPPPN 131
           YW+   +G DK +   GR  +GIK ALVF+ G AP G KT+WIMHEYRL           
Sbjct: 95  YWK--ATGADKPVAPRGR-TLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAK 151
Query: 132 NGSSKLDDWIL 142
            GS +LDDW+L
Sbjct: 152 KGSLRLDDWVL 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1ut7_A	171	No apical meristem protein; transcription regulati	4e-59
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-56

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  179 bits (456), Expect = 4e-59
 Identities = 87/148 (58%), Positives = 103/148 (69%), Gaps = 18/148 (12%)

Query: 10  ICLPPCFR---------------KVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWY 54
           + LPP FR               K AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWY
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 55  FFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGT 114
           FF P DRK P  S PNRV   GYW+   +GTDKII+T G+  VGIK ALVF++G AP GT
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQ-RVGIKKALVFYIGKAPKGT 131

Query: 115 KTNWIMHEYRLFEPPPNNGSSKLDDWIL 142
           KTNWIMHEYRL EP   NGS+KLDDW+L
Sbjct: 132 KTNWIMHEYRLIEPSRRNGSTKLDDWVL 159

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  172 bits (438), Expect = 3e-56
 Identities = 76/153 (49%), Positives = 92/153 (60%), Gaps = 23/153 (15%)

Query: 10  ICLPPCFR---------------KVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWY 54
           + LPP FR               K AG RL + IIAE+DL+KF+PW+LP +ALFG  EWY
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72

Query: 55  FFCPMDRKNPEASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGT 114
           FF P DRK P  S PNR    GYW+   +G DK +   GR  +GIK ALVF+ G AP G 
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWK--ATGADKPVAPRGR-TLGIKKALVFYAGKAPRGV 129

Query: 115 KTNWIMHEYRLFE-----PPPNNGSSKLDDWIL 142
           KT+WIMHEYRL +          GS +LDDW+L
Sbjct: 130 KTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVL 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=4.2e-48  Score=289.57  Aligned_cols=135  Identities=53%  Similarity=1.018  Sum_probs=117.2

Q ss_pred             ccCCceecCCCccceecCCCCCCCceeeccCCCCCCCCCCCcccCCCceEEEEeecCCCCCCCCCCeeeceecEEeeCCC
Q 048576            4 VFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGS   83 (142)
Q Consensus         4 ~~D~eli~~~yl~rKi~g~plp~~~I~e~Dvy~~~PweL~~~~~~~~~~wyFFs~~~~~~~~g~r~~R~~~~G~Wk~~~~   83 (142)
                      -||+|||.+ ||.+|+.|.++|.++|.++|||.+|||+||+.+..++++|||||++.+++++|.|++|++++|+||+  +
T Consensus        23 PTDeELV~~-YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~Wka--t   99 (174)
T 3ulx_A           23 PTDDELVEH-YLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKA--T   99 (174)
T ss_dssp             CCHHHHHHH-THHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEE--C
T ss_pred             CCHHHHHHH-HHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEcc--C
Confidence            589999999 9999999999999999999999999999999887788999999999999999999999999999999  9


Q ss_pred             CCceEEeCCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCC-----CCCCCCCeeC
Q 048576           84 GTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNN-----GSSKLDDWIL  142 (142)
Q Consensus        84 G~~~~I~~~~~~vvG~Kk~l~fy~~~~~~~~kt~W~M~EY~l~~~~~~~-----~~~~~~~wvl  142 (142)
                      |++++|... +.+||+|++|+||.+++|++.+|+|+||||+|.++....     ++++++||||
T Consensus       100 G~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVl  162 (174)
T 3ulx_A          100 GADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVL  162 (174)
T ss_dssp             SCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEE
T ss_pred             CCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEE
Confidence            999999865 578899999999999999999999999999999985432     3356799997

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=5.6e-48  Score=288.43  Aligned_cols=136  Identities=63%  Similarity=1.123  Sum_probs=114.4

Q ss_pred             cccCCceecCCCccceecCCCCCCCceeeccCCCCCCCCCCCcccCCCceEEEEeecCCCCCCCCCCeeeceecEEeeCC
Q 048576            3 DVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAG   82 (142)
Q Consensus         3 ~~~D~eli~~~yl~rKi~g~plp~~~I~e~Dvy~~~PweL~~~~~~~~~~wyFFs~~~~~~~~g~r~~R~~~~G~Wk~~~   82 (142)
                      .-||+|||.+ ||.+||.|.++|.++|+++|||.+|||+||+.+..++++||||+++.+++++|.|++|++++|+||+  
T Consensus        24 ~PTDeELv~~-YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~--  100 (171)
T 1ut7_A           24 YPTDEELMVQ-YLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKA--  100 (171)
T ss_dssp             CCCHHHHHHH-THHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEE--
T ss_pred             CCChHHHHHH-HHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEec--
Confidence            3589999999 9999999999999999999999999999999887789999999999999999999999999999999  


Q ss_pred             CCCceEEeCCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCCCCCCCCeeC
Q 048576           83 SGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNNGSSKLDDWIL  142 (142)
Q Consensus        83 ~G~~~~I~~~~~~vvG~Kk~l~fy~~~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~wvl  142 (142)
                      +|++++|...+ .+||+|++|+||.++.|++.+|+|+||||+|......++....++|||
T Consensus       101 tG~~k~I~~~~-~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~Vl  159 (171)
T 1ut7_A          101 TGTDKIISTEG-QRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVL  159 (171)
T ss_dssp             EEEEEEEEETT-EEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEE
T ss_pred             cCCCceEEecC-cEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEE
Confidence            99999998654 789999999999999999999999999999999875555567799997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-43

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  139 bits (351), Expect = 1e-43
 Identities = 83/126 (65%), Positives = 98/126 (77%), Gaps = 3/126 (2%)

Query: 17  RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
           RK AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWYFF P DRK P  S PNRV   G
Sbjct: 37  RKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSG 96

Query: 77  YWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNNGSSK 136
           YW+   +GTDKII+T G+  VGIK ALVF++G AP GTKTNWIMHEYRL EP   NGS+K
Sbjct: 97  YWK--ATGTDKIISTEGQ-RVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTK 153

Query: 137 LDDWIL 142
           LDDW+L
Sbjct: 154 LDDWVL 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-45  Score=271.62  Aligned_cols=135  Identities=62%  Similarity=1.119  Sum_probs=112.8

Q ss_pred             ccCCceecCCCccceecCCCCCCCceeeccCCCCCCCCCCCcccCCCceEEEEeecCCCCCCCCCCeeeceecEEeeCCC
Q 048576            4 VFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGS   83 (142)
Q Consensus         4 ~~D~eli~~~yl~rKi~g~plp~~~I~e~Dvy~~~PweL~~~~~~~~~~wyFFs~~~~~~~~g~r~~R~~~~G~Wk~~~~   83 (142)
                      -||+|||.+ ||.+||.|.|+|.++|+++|||.+|||+||+....++++||||+++.++++++.|++|++++|+||+  +
T Consensus        25 PTDeELv~~-YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R~~g~G~Wk~--~  101 (166)
T d1ut7a_          25 PTDEELMVQ-YLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKA--T  101 (166)
T ss_dssp             CCHHHHHHH-THHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEE--E
T ss_pred             CCcHHHHHH-HHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccccccCCCEecc--c
Confidence            489999999 9999999999999999999999999999998877778899999999999999999999999999999  9


Q ss_pred             CCceEEeCCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCCCCCCCCeeC
Q 048576           84 GTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNNGSSKLDDWIL  142 (142)
Q Consensus        84 G~~~~I~~~~~~vvG~Kk~l~fy~~~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~wvl  142 (142)
                      |++++|.++ +.+||+|++|+||+++.+++.+|+|+||||+|.+.....+...++||||
T Consensus       102 g~~~~i~~~-g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VL  159 (166)
T d1ut7a_         102 GTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVL  159 (166)
T ss_dssp             EEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEE
T ss_pred             CCCceEecC-CcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEE
Confidence            999889765 4788999999999999999999999999999999887777778899997