Citrus Sinensis ID: 048588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNLKSFLQIAYIHPVFKEVQESESDPASEESDQEPVLIPTKRQSRMNTLLPSKHSGSMTSLGCIQSLDFSRPHQSKCIQRLDATVAWCHSCTVV
cEEEEHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHcccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEEcccccc
MAYAFTFWTCYVLKREYEIVAAMRLHFLasehrqpdqftvlvrnvppdpdesVTQLVEHFFlvnhpdhylthqvvsnankpselVNKKKKMQNWLDFYELkysrnpsqkpsmktgflglwgetvdpidfYTSKIETLKKEATAFVSFKTRWGAAVCAqtqqtrnptlwltdwapeprdvywdnlaipfVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFmhqsandipktigisipMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVndreeamdpgaigfntgePQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEyesaaafwpdVHGRIITALIVSQLLLMGLLStkeaaqstpllitlpilTIWFHrfckgryepafvryplqeAMMKDTLERarepnlnlksFLQIAYIHPvfkevqesesdpaseesdqepvliptkrqsrmntllpskhsgsmtslgciqsldfsrphqsKCIQRLDATVAWCHSCTVV
MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKysrnpsqkpSMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVcaqtqqtrnptlwltdwaPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNLKSFLQIAYIHPVFKEVQESesdpaseesdqepvliptkrqsrMNTLlpskhsgsmtSLGCIQSLDFSRPHQSKCIQRLDATVAWCHSCTVV
MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVapfllpfiivffalafvvYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQStpllitlpiltiWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNLKSFLQIAYIHPVFKEVqesesdpaseesdqepVLIPTKRQSRMNTLLPSKHSGSMTSLGCIQSLDFSRPHQSKCIQRLDATVAWCHSCTVV
**YAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNV******SVTQLVEHFFLVNHPDHYLTHQVVSN************KMQNWLDFYELKY***********TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNLKSFLQIAYIHPVFK********************************************GCIQSLDFSRPHQSKCIQRLDATVAWCHSCT**
MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPL*******************************************************************************************************CHSCTVV
MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNLKSFLQIAYIHPVFKE*****************VLIPTKRQSRMNTLLPSKHSGSMTSLGCIQSLDFSRPHQSKCIQRLDATVAWCHSCTVV
MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNLKSFLQIAYIHPVFK*************************************************************QRLDATVAWCHSCTVV
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MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNLKSFLQIAYIHPVFKEVQESESDPASEESDQEPVLIPTKRQSRMNTLLPSKHSGSMTSLGCIQSLDFSRPHQSKCIQRLDATVAWCHSCTVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query615 2.2.26 [Sep-21-2011]
Q09809793 Uncharacterized membrane yes no 0.767 0.595 0.227 3e-30
Q03516 953 Uncharacterized protein R yes no 0.6 0.387 0.223 8e-23
Q12252 991 Phosphate metabolism prot no no 0.775 0.481 0.233 1e-22
Q06538782 Uncharacterized membrane no no 0.608 0.478 0.231 4e-22
Q09766871 Uncharacterized membrane no no 0.710 0.501 0.208 8e-21
O43022865 Uncharacterized protein C no no 0.887 0.631 0.228 4e-17
Q91YT8804 Transmembrane protein 63A yes no 0.601 0.460 0.225 4e-15
Q3TWI9832 Transmembrane protein 63B no no 0.617 0.456 0.208 2e-13
Q5T3F8832 Transmembrane protein 63B yes no 0.617 0.456 0.205 6e-13
O94886807 Transmembrane protein 63A no no 0.643 0.490 0.225 1e-12
>sp|Q09809|YAB9_SCHPO Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=3 SV=2 Back     alignment and function desciption
 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/541 (22%), Positives = 236/541 (43%), Gaps = 69/541 (12%)

Query: 2   AYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFF 61
            Y  + +  YVL    + +A +R  +LA ++R  D+ TV +  +P +     T+ ++ +F
Sbjct: 201 TYFISIFLLYVLFSSTKSIADIRQSYLARQNRLTDR-TVFISGLPNE--LCSTENLKAYF 257

Query: 62  LVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRN---------------- 105
                    +  +  N +    L++KK K    L+ Y   Y  N                
Sbjct: 258 DKLDVGSIDSLSICRNYSYMDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLS 317

Query: 106 ---------PSQ-----------KPSMKTGFLGLWGETVDPIDFYTSKIETLKKE----- 140
                    P Q            P +KT F G++G+ +D IDFY++K+  + ++     
Sbjct: 318 PNRAELESTPEQLLEVPWQHHQCHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENAR 377

Query: 141 -------ATAFVSFKTRWGAAVCAQTQQTRNPTLWL-TDWAPEPRDVYWDNLAIPFVSLT 192
                    AF++F++   A + AQT       + L  + AP   D+ W N  I      
Sbjct: 378 SFDYPTTGQAFITFESMATAQIVAQTHIDSKSLMGLHIELAPAANDIQWHNTYIGRWHKF 437

Query: 193 IRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIE-VKVIKSFIQGFLPG 251
            +   I +  F +   + +P+  +    N++ I +  P L  +IE +  + S ++ FLP 
Sbjct: 438 FQGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRLWPELGRMIEDLPFLNSLLRTFLPT 497

Query: 252 IALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTA----- 306
           +   +F+   P +   +S  +G  SRA     +  + Y + F+N FL  +I G+      
Sbjct: 498 LVYSLFISISPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLFVNFFLVYVIAGSTSIWEL 557

Query: 307 FQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIF 366
            +   +F H  AN +P         +A FFI  I++ G      ++++L  L  Y ++  
Sbjct: 558 AKDTTSFAHFLANRLPH--------QAQFFIDLIVLQGIGMFPLKLIQLGKLSSYFVRRS 609

Query: 367 FLVKTVNDRE-EAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVY 425
           F+  ++  ++ E  D  ++G     PQ     L+ L Y++++P +L F +++F + F+VY
Sbjct: 610 FVPYSIASKKFETPDSFSVGIFL--PQPMFIMLICLCYSIISPLILVFGLIYFIIGFLVY 667

Query: 426 IHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILT 485
            +++I        S    W  +  R+I   ++ QL +MGL+S ++A   + ++  L   T
Sbjct: 668 KYELIYQMEHPQHSTGELWSTIFLRMIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFT 727

Query: 486 I 486
           +
Sbjct: 728 V 728

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q03516|RSN1_YEAST Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1 Back     alignment and function description
>sp|Q12252|PHM7_YEAST Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1 Back     alignment and function description
>sp|Q06538|YL241_YEAST Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1 Back     alignment and function description
>sp|Q09766|YA7D_SCHPO Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 Back     alignment and function description
>sp|O43022|YGV8_SCHPO Uncharacterized protein C354.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC354.08c PE=4 SV=1 Back     alignment and function description
>sp|Q91YT8|TM63A_MOUSE Transmembrane protein 63A OS=Mus musculus GN=Tmem63a PE=2 SV=1 Back     alignment and function description
>sp|Q3TWI9|TM63B_MOUSE Transmembrane protein 63B OS=Mus musculus GN=Tmem63b PE=1 SV=1 Back     alignment and function description
>sp|Q5T3F8|TM63B_HUMAN Transmembrane protein 63B OS=Homo sapiens GN=TMEM63B PE=1 SV=1 Back     alignment and function description
>sp|O94886|TM63A_HUMAN Transmembrane protein 63A OS=Homo sapiens GN=TMEM63A PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
224131634 768 predicted protein [Populus trichocarpa] 0.944 0.756 0.829 0.0
224064953 763 predicted protein [Populus trichocarpa] 0.944 0.761 0.814 0.0
356501300 760 PREDICTED: uncharacterized membrane prot 0.944 0.764 0.804 0.0
449490363 768 PREDICTED: uncharacterized protein RSN1- 0.944 0.756 0.775 0.0
449468470 768 PREDICTED: uncharacterized protein RSN1- 0.944 0.756 0.775 0.0
164605531 755 CM0545.360.nc [Lotus japonicus] 0.941 0.766 0.793 0.0
357493417 766 Transmembrane protein [Medicago truncatu 0.939 0.754 0.777 0.0
225444325 771 PREDICTED: uncharacterized membrane prot 0.930 0.741 0.751 0.0
297739189 766 unnamed protein product [Vitis vinifera] 0.939 0.754 0.760 0.0
225447093 767 PREDICTED: uncharacterized membrane prot 0.939 0.753 0.758 0.0
>gi|224131634|ref|XP_002321139.1| predicted protein [Populus trichocarpa] gi|222861912|gb|EEE99454.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/597 (82%), Positives = 532/597 (89%), Gaps = 16/597 (2%)

Query: 1   MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHF 60
           MAYAFTFWTCYVLK EYE VA MRLHFLASE R+PDQFTVLVRNVPPDPDESV++LVEHF
Sbjct: 161 MAYAFTFWTCYVLKTEYETVAKMRLHFLASEKRRPDQFTVLVRNVPPDPDESVSELVEHF 220

Query: 61  FLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFLGLW 120
           FLVNHP  YLTHQVV NAN+ S LVNKKKKM+NWLD+Y++KYSRN S+KPS+KTGFLGLW
Sbjct: 221 FLVNHPSDYLTHQVVYNANELSNLVNKKKKMKNWLDYYQIKYSRNQSRKPSLKTGFLGLW 280

Query: 121 GETVDPIDFYTSKIETLKKEAT----------------AFVSFKTRWGAAVCAQTQQTRN 164
           G  VD ID YTS+IE L +E +                AFVSFKTRWGAAVCAQTQQ+RN
Sbjct: 281 GNRVDAIDHYTSEIERLSREISLERDKIVNNPKSIMPAAFVSFKTRWGAAVCAQTQQSRN 340

Query: 165 PTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEG 224
           PT+WLT WAPEPRDVYWDNLAIPFVSLT+RRL+I VA+FFLTFFFMIPIA VQSLANIEG
Sbjct: 341 PTIWLTGWAPEPRDVYWDNLAIPFVSLTLRRLVIAVAFFFLTFFFMIPIAFVQSLANIEG 400

Query: 225 IEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRS 284
           IEKALPFLKPIIE+KVIKSFIQGFLPGIALKIFLIFLP ILMLMSK EGFIS + L RRS
Sbjct: 401 IEKALPFLKPIIEMKVIKSFIQGFLPGIALKIFLIFLPSILMLMSKFEGFISLSGLERRS 460

Query: 285 ATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDG 344
           A RYYIFQF+NVFLGSIITGTAFQQLDNF+HQSA  IPKT+G+SIPMKA FFITYIMVDG
Sbjct: 461 AARYYIFQFVNVFLGSIITGTAFQQLDNFIHQSATQIPKTVGVSIPMKATFFITYIMVDG 520

Query: 345 WAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYA 404
           WAGVAGEILRLKPLI+YHLK FFLVKT  D++EAMDPG +GFNTGEPQIQLYFLLGLVYA
Sbjct: 521 WAGVAGEILRLKPLIIYHLKNFFLVKTEKDKKEAMDPGTLGFNTGEPQIQLYFLLGLVYA 580

Query: 405 VVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMG 464
           VV+P LLPFIIVFFALAFVVY HQ+INVYNQEYESAAAFWPDVHGRII A+IVSQLLLMG
Sbjct: 581 VVSPILLPFIIVFFALAFVVYRHQIINVYNQEYESAAAFWPDVHGRIIVAVIVSQLLLMG 640

Query: 465 LLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNL 524
           LLSTKEAAQSTPLLITLPILTIWFH FCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNL
Sbjct: 641 LLSTKEAAQSTPLLITLPILTIWFHLFCKGRYEPAFVRYPLQEAMMKDTLERAREPNLNL 700

Query: 525 KSFLQIAYIHPVFKEVQESESDPASEESDQEPVLIPTKRQSRMNTLLPSKHSGSMTS 581
           KSFLQ AY HPVFK   +S+SD A EE ++EP L+PTKRQSR NT LPSKHSGS+ S
Sbjct: 701 KSFLQNAYSHPVFKGEDDSDSDEAPEEFEKEPDLVPTKRQSRRNTPLPSKHSGSVPS 757

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064953|ref|XP_002301612.1| predicted protein [Populus trichocarpa] gi|222843338|gb|EEE80885.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501300|ref|XP_003519463.1| PREDICTED: uncharacterized membrane protein C2G11.09-like [Glycine max] Back     alignment and taxonomy information
>gi|449490363|ref|XP_004158583.1| PREDICTED: uncharacterized protein RSN1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449468470|ref|XP_004151944.1| PREDICTED: uncharacterized protein RSN1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|164605531|dbj|BAF98597.1| CM0545.360.nc [Lotus japonicus] Back     alignment and taxonomy information
>gi|357493417|ref|XP_003616997.1| Transmembrane protein [Medicago truncatula] gi|355518332|gb|AES99955.1| Transmembrane protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225444325|ref|XP_002264502.1| PREDICTED: uncharacterized membrane protein C24H6.13 isoform 1 [Vitis vinifera] gi|302144095|emb|CBI23200.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739189|emb|CBI28840.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447093|ref|XP_002270698.1| PREDICTED: uncharacterized membrane protein C2G11.09-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
TAIR|locus:2134882772 AT4G04340 [Arabidopsis thalian 0.782 0.623 0.648 1.6e-215
TAIR|locus:2089850756 AT3G21620 "AT3G21620" [Arabido 0.874 0.711 0.722 1.7e-215
TAIR|locus:2120673771 AT4G22120 [Arabidopsis thalian 0.938 0.748 0.673 1e-212
TAIR|locus:2008860771 AT1G11960 "AT1G11960" [Arabido 0.944 0.753 0.650 1e-203
TAIR|locus:2130130761 AT4G15430 "AT4G15430" [Arabido 0.936 0.756 0.659 1.9e-202
TAIR|locus:2027119769 AT1G62320 "AT1G62320" [Arabido 0.930 0.743 0.64 1.6e-198
TAIR|locus:2140210785 AT4G02900 [Arabidopsis thalian 0.941 0.737 0.601 5.4e-189
TAIR|locus:2031735806 AT1G32090 "AT1G32090" [Arabido 0.869 0.663 0.575 1.4e-174
TAIR|locus:2102117703 HYP1 "hypothetical protein 1" 0.848 0.742 0.324 7.1e-77
TAIR|locus:2007126711 AT1G69450 [Arabidopsis thalian 0.852 0.736 0.285 1.9e-67
TAIR|locus:2134882 AT4G04340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1582 (562.0 bits), Expect = 1.6e-215, Sum P(2) = 1.6e-215
 Identities = 323/498 (64%), Positives = 364/498 (73%)

Query:   105 NPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEAT----------------AFVSFK 148
             N   +P  K G LGL G+ VD I+ Y ++++   KE                  +FVSFK
Sbjct:   270 NSQIRPITKLGCLGLCGQKVDAIEHYIAEVDKTSKEIAEERENVVNDQKSVMPASFVSFK 329

Query:   149 TRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFF 208
             TRW AAVCAQT QTRNPT WLT+WA EPRD+YW NLAIP+VSLT+RRL++ VA+FFLTFF
Sbjct:   330 TRWAAAVCAQTTQTRNPTEWLTEWAAEPRDIYWPNLAIPYVSLTVRRLVMNVAFFFLTFF 389

Query:   209 FMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLM 268
             F+IPIA VQSLA IEGIEK  PFLK IIE   IKS IQG L GIALK+FLIFLP ILM M
Sbjct:   390 FIIPIAFVQSLATIEGIEKVAPFLKVIIEKDFIKSLIQGLLAGIALKLFLIFLPAILMTM 449

Query:   269 SKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGIS 328
             SK EGF S + L RRSA+RYYIF  +NVFLGS+I G AF+QL++F++QS N IPKTIG++
Sbjct:   450 SKFEGFTSVSFLERRSASRYYIFNLVNVFLGSVIAGAAFEQLNSFLNQSPNQIPKTIGMA 509

Query:   329 IPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDPGAIGFNT 388
             IPMKA FFITYIMVDGWAGVAGEIL LKPLI+YHLK  FLVKT  DREEAM+PG+IGFNT
Sbjct:   510 IPMKATFFITYIMVDGWAGVAGEILMLKPLIIYHLKNAFLVKTEKDREEAMNPGSIGFNT 569

Query:   389 GEPQIQLYFLLGLVYAVVXXXXXXXXXXXXXXXXXXYIHQVINVYNQEYESAAAFWPDVH 448
             GEPQIQLYFLLGLVYA V                  Y HQ+INVYNQEYESAAAFWPDVH
Sbjct:   570 GEPQIQLYFLLGLVYAPVTPMLLPFILVFFALAYVVYRHQIINVYNQEYESAAAFWPDVH 629

Query:   449 GRIITALIVSQLLLMGLLSTKEAAQSXXXXXXXXXXXXWFHRFCKGRYEPAFVRYPLQEA 508
             GR+ITALI+SQLLLMGLL TK AA +             FHRFCKGR+EPAFVRYPLQEA
Sbjct:   630 GRVITALIISQLLLMGLLGTKHAASAAPFLIALPVITIGFHRFCKGRFEPAFVRYPLQEA 689

Query:   509 MMKDTLERAREPNLNLKSFLQIAYIHPVFKEVXXXXXXXXXXXXXXXXVLIPTKRQSRMN 568
             MMKDTLERAREPNLNLK +LQ AYIHPVFK                  +++PTKRQSR N
Sbjct:   690 MMKDTLERAREPNLNLKGYLQDAYIHPVFKGGDNDDDGDMIGKLENEVIIVPTKRQSRRN 749

Query:   569 TLLPSKHSG-SMTSLGCI 585
             T  PS+ SG S  SL  I
Sbjct:   750 TPAPSRISGESSPSLAVI 767
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IEA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2089850 AT3G21620 "AT3G21620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120673 AT4G22120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008860 AT1G11960 "AT1G11960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130130 AT4G15430 "AT4G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027119 AT1G62320 "AT1G62320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140210 AT4G02900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031735 AT1G32090 "AT1G32090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102117 HYP1 "hypothetical protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007126 AT1G69450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XIV000440
hypothetical protein (768 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
pfam02714325 pfam02714, DUF221, Domain of unknown function DUF2 1e-115
COG5594827 COG5594, COG5594, Uncharacterized integral membran 2e-53
>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221 Back     alignment and domain information 
 Score =  345 bits (888), Expect = e-115
 Identities = 124/326 (38%), Positives = 192/326 (58%), Gaps = 3/326 (0%)

Query: 143 AFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAY 202
           AFV+FK++  A + AQ  Q  NP  W T  APEPRD+ W+NL++      +RRLI+ +  
Sbjct: 1   AFVTFKSQAAAQMAAQALQHHNPLKWPTYLAPEPRDIIWENLSLSRWERWLRRLIVNLLL 60

Query: 203 FFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEV-KVIKSFIQGFLPGIALKIFLIFL 261
           F L  F+ IP+A V  L+N+E + K  PFLK I+++  V+   + G LP + L + +  L
Sbjct: 61  FLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILDLPPVLLGLVTGLLPTLLLSLLMALL 120

Query: 262 PDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDI 321
           P IL  +SK +G  SR+ +     ++Y+ F  +NVFL   +  TA   +   +      I
Sbjct: 121 PIILRFLSKLQGHPSRSDVELSVQSKYFAFLVVNVFLVVTLASTASSLITEIIDN-PTSI 179

Query: 322 PKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAM-D 380
           P  +  ++P  + FFI+YI++ G +G AGE+L+L PLI+Y+++  FL KT  D+ E    
Sbjct: 180 PTLLATNLPKASNFFISYILLQGLSGAAGELLQLGPLILYYIRRKFLDKTPRDKWERYTT 239

Query: 381 PGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESA 440
           P +  + T  P   L F +GL+Y+V+AP +LPF +V+F L + VY +Q++ VY  +YES 
Sbjct: 240 PPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYVYVTKYESG 299

Query: 441 AAFWPDVHGRIITALIVSQLLLMGLL 466
             FWP    R++  L + QL L+GL 
Sbjct: 300 GLFWPRALNRLLVGLYLFQLCLIGLF 325

This family consists of hypothetical transmembrane proteins none of which have any function, the aligned region is at 538 residues at maximum length. Length = 325
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 615
KOG1134728 consensus Uncharacterized conserved protein [Gener 100.0
COG5594827 Uncharacterized integral membrane protein [Functio 100.0
PF02714325 DUF221: Domain of unknown function DUF221; InterPr 100.0
PF1470385 DUF4463: Domain of unknown function (DUF4463) 99.15
PF04547452 Anoctamin: Calcium-activated chloride channel; Int 99.12
KOG2513647 consensus Protein required for meiotic chromosome 97.96
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 95.38
TIGR01628562 PABP-1234 polyadenylate binding protein, human typ 93.31
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 92.78
TIGR01648578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 92.39
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 92.38
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 90.18
TIGR01648578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 89.75
KOG0144510 consensus RNA-binding protein CUGBP1/BRUNO (RRM su 89.7
KOG0122270 consensus Translation initiation factor 3, subunit 89.48
PF07810111 TMC: TMC domain; InterPro: IPR012496 These sequenc 88.5
KOG2514861 consensus Uncharacterized conserved protein [Funct 87.45
TIGR01628562 PABP-1234 polyadenylate binding protein, human typ 82.8
KOG0125376 consensus Ataxin 2-binding protein (RRM superfamil 82.68
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-107  Score=922.47  Aligned_cols=561  Identities=50%  Similarity=0.878  Sum_probs=530.4

Q ss_pred             CeEeehHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCc
Q 048588            1 MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANK   80 (615)
Q Consensus         1 ~~y~ft~~~~y~l~~ey~~~~~~R~~~l~s~~~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~   80 (615)
                      ++|+|++|+||++++||++++.+|++|++++.++++++|++++|+|+..+.+..+.++++|...+|+++.+++++||.++
T Consensus       151 ~~y~~~~~~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (728)
T KOG1134|consen  151 FTYLFTFFTLFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESK  230 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHHhhHHH
Confidence            57999999999999999999999999999999999999999999998767778899999999999999999999999999


Q ss_pred             hhHHHHHHHHH-HHHHHHHHHHhccCCCCCCcccccccCCCCCcccHHHHHHHHHhhhccce--------------EEEE
Q 048588           81 PSELVNKKKKM-QNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEA--------------TAFV  145 (615)
Q Consensus        81 L~~L~~~r~~~-~~~Le~~~~k~~~~~~~RP~~r~g~~g~~g~kVDaI~~~~~ki~~l~~~I--------------~AFV  145 (615)
                      +.++.++++++ ++++.+...+..+++++||++|.|+||++|+||||||||++|+++++++|              +|||
T Consensus       231 l~~l~~~~~k~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~~~~~~aFV  310 (728)
T KOG1134|consen  231 LSKLLSKLKKLRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEEKPLPAAFV  310 (728)
T ss_pred             HHHHHHHHHHHhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            99999999999 66777666666666668999999999999999999999999999999887              9999


Q ss_pred             EecCHHHHHHHHHhhcCCCCCcceeecCCCCCcceecccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 048588          146 SFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGI  225 (615)
Q Consensus       146 tF~s~~~A~~~~Q~~~~~~p~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPva~v~~l~nl~~L  225 (615)
                      ||+|+++|+.|+|+.++.+|+.|.++.||||+||+|+|+.++..+|+.|+++++++++++++||++|+++||+++|+++|
T Consensus       311 tf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l  390 (728)
T KOG1134|consen  311 TFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGL  390 (728)
T ss_pred             EEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHhhhhhhHHHHHHHHHHHhhhhhc
Q 048588          226 EKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGT  305 (615)
Q Consensus       226 ~~~~p~l~~~~~~~~~~~li~g~LPslil~i~~~llP~il~~ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvflv~~l~gs  305 (615)
                      ++.+||++.+.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|++++.|+|+|+++|+|++++++|+
T Consensus       391 ~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~s  470 (728)
T KOG1134|consen  391 SKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGS  470 (728)
T ss_pred             hhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHH
Confidence            99999999998889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHHHHHhhhhhhHhhhchHHHHHHHHHHhhccCCHHHHHHhcCC-CCC
Q 048588          306 AFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDP-GAI  384 (615)
Q Consensus       306 ~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yii~~~~~~~~~~Llr~~~li~~~~~~~~~~kT~re~~~~~~~-~~f  384 (615)
                      +++++..++++| .+++..+|.++|++++||++|++++||+|.++||+|+++|+++++++.+..+|||++++.++| +.+
T Consensus       471 a~~~~~~~l~~p-~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~  549 (728)
T KOG1134|consen  471 ALRQLLSILSTP-RLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSF  549 (728)
T ss_pred             HHHHHHHHhcCH-hHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCcccc
Confidence            999999999887 899999999999999999999999999999999999999999999999889999999999998 789


Q ss_pred             CccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 048588          385 GFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMG  464 (615)
Q Consensus       385 ~~g~~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i~~~l~l~ql~~~g  464 (615)
                      ++|..||..+++++||++||+++|+|+|||++||+++|+|||||++|||.++|||||++||.+|+++++|+++||++|+|
T Consensus       550 ~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~g  629 (728)
T KOG1134|consen  550 YFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFG  629 (728)
T ss_pred             chhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccchhHHHHHHHHHHHHHHHhhccccccccCChhHhhhcchhhhhcCCCc-chhhhhhhccCCCCCCCCCCC
Q 048588          465 LLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNL-NLKSFLQIAYIHPVFKEVQES  543 (615)
Q Consensus       465 l~~lk~~~~~~~~~i~L~i~ti~f~~~~~~~f~~~~~~~pl~~a~~~d~~~~~~~~~~-~~~~~l~~~Y~~P~l~~~~~~  543 (615)
                      +|++|+++..+.+++|++++|++||.+|+.+|.|.+..+|+++++.+|+.++..+++. +..+++.++|.||++.+.+++
T Consensus       630 l~~~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  709 (728)
T KOG1134|consen  630 LFSLKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGSDS  709 (728)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccccccccCccccccccc
Confidence            9999999999999999999999999999999999999999999999999998777755 577889999999999988744


Q ss_pred             CCCcCccccCCCCcccccccc
Q 048588          544 ESDPASEESDQEPVLIPTKRQ  564 (615)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~  564 (615)
                      +.  ..+..+++++++.|||+
T Consensus       710 ~~--~~~~~~~~~~~~~~~~~  728 (728)
T KOG1134|consen  710 DG--SELSSEEKSPIVLTKRN  728 (728)
T ss_pred             cc--cccccccCCcHhhcCCC
Confidence            32  11233444777777763

>COG5594 Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length Back     alignment and domain information
>PF14703 DUF4463: Domain of unknown function (DUF4463) Back     alignment and domain information
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [] Back     alignment and domain information
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain [] Back     alignment and domain information
>KOG2514 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 62/466 (13%), Positives = 131/466 (28%), Gaps = 129/466 (27%)

Query: 231 FLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRY-Y 289
             K I+  + I   I             +F    L+   +    + +  +       Y +
Sbjct: 41  MPKSILSKEEIDHIIM--SKDAVSGTLRLF--WTLLSKQEE---MVQKFVEEVLRINYKF 93

Query: 290 IFQFINVFLG--SIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFF----------- 336
           +   I       S++T    +Q D       ND       ++     +            
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 337 ITYIMVDGWAG-----VAGEILR-LKPLIVYHLKIFFL-VKTVNDREEAMDPGAIGFNTG 389
              +++DG  G     VA ++    K       KIF+L +K  N  E  +          
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---------- 199

Query: 390 EPQIQLYFLLGLVYAVVA--PFLLPFIIVFFALAFVVYIHQ-------VI--NVYNQEYE 438
           E   +L + +   +   +     +   I          +         ++  NV N +  
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-- 257

Query: 439 SAAAFWPDVHGRI-IT-----------ALIVSQLLL------------MGLLST------ 468
           +  AF  ++  +I +T           A   + + L              LL        
Sbjct: 258 AWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 469 ----KEAAQSTPLLITLPILTIW-FHRFCKGRYEPAFVRYPLQEAM---MKDTLERAREP 520
               +E   + P  +++    I    R     ++    ++   + +   ++ +L    EP
Sbjct: 316 QDLPREVLTTNPRRLSI----IAESIRDGLATWD--NWKHVNCDKLTTIIESSLN-VLEP 368

Query: 521 NLNLKSFLQIAYIHPVFKEVQESESDPA-------SEESDQEPVLIPTKRQSRMNTLLPS 573
               K F +++    VF     S   P         +    + +++  K        L  
Sbjct: 369 AEYRKMFDRLS----VF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVE 418

Query: 574 KHSGSMT-SLGCIQSLDFSRP-------HQSKCIQRLDATVAWCHS 611
           K     T S+  I  L+           H+   +   +    +   
Sbjct: 419 KQPKESTISIPSIY-LELKVKLENEYALHR-SIVDHYNIPKTFDSD 462

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
2dnp_A90 RNA-binding protein 14; RRM domain, RBD, structura 96.2
2dnz_A95 Probable RNA-binding protein 23; RNA recognition m 96.1
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 96.07
4fxv_A99 ELAV-like protein 1; RNA recognition motif, putati 96.03
2jrs_A108 RNA-binding protein 39; RNA binding motif of RBM39 96.01
2lkz_A95 RNA-binding protein 5; RRM; NMR {Homo sapiens} 96.0
2dgt_A92 RNA-binding protein 30; RRM domain, structural gen 95.97
3s8s_A110 Histone-lysine N-methyltransferase SETD1A; chromat 95.75
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 95.74
2cpd_A99 Apobec-1 stimulating protein; RNA recognition moti 95.7
2dgs_A99 DAZ-associated protein 1; RRM domain, structural g 95.64
3nmr_A175 Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl 95.63
1x5s_A102 Cold-inducible RNA-binding protein; structure geno 95.61
2e5h_A94 Zinc finger CCHC-type and RNA-binding motif- conta 95.57
2do4_A100 Squamous cell carcinoma antigen recognized by T- c 95.54
2dgu_A103 Heterogeneous nuclear ribonucleoprotein Q; RRM dom 95.52
3md3_A166 Nuclear and cytoplasmic polyadenylated RNA-bindin 95.5
3mdf_A85 Peptidyl-prolyl CIS-trans isomerase E; RRM domain, 95.48
2dnh_A105 Bruno-like 5, RNA binding protein; RRM domain, RBD 95.47
2cpz_A115 CUG triplet repeat RNA-binding protein 1; RRM doma 95.41
3md1_A83 Nuclear and cytoplasmic polyadenylated RNA-bindin 95.38
3p5t_L90 Cleavage and polyadenylation specificity factor S; 95.34
1x5u_A105 Splicing factor 3B subunit 4 (spliceosome associat 95.33
2dgp_A106 Bruno-like 4, RNA binding protein; RRM domain, str 95.32
2dgv_A92 HnRNP M, heterogeneous nuclear ribonucleoprotein M 95.29
1whw_A99 Hypothetical protein riken cDNA 1200009A02; RNA re 95.29
2dhg_A104 TRNA selenocysteine associated protein (SECP43); R 95.28
2dgo_A115 Cytotoxic granule-associated RNA binding protein 1 95.27
2cqc_A95 Arginine/serine-rich splicing factor 10; RNA recog 95.19
1p27_B106 RNA-binding protein 8A; nuclear protein, mRNA spli 95.11
2cpj_A99 Non-POU domain-containing octamer-binding protein; 95.09
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 95.08
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 95.04
2cq0_A103 Eukaryotic translation initiation factor 3 subunit 95.02
2cph_A107 RNA binding motif protein 19; RNA recognition moti 95.0
2cqg_A103 TDP-43, TAR DNA-binding protein-43; RNA recognitio 94.99
1x4c_A108 Splicing factor, arginine/serine-rich 1; structura 94.97
2dng_A103 Eukaryotic translation initiation factor 4H; RRM d 94.96
2div_A99 TRNA selenocysteine associated protein; structural 94.94
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 94.93
2dnm_A103 SRP46 splicing factor; RRM domain, RBD, structural 94.89
2cqd_A116 RNA-binding region containing protein 1; RNA recog 94.88
2khc_A118 Testis-specific RNP-type RNA binding protein; RRM, 94.86
2x1f_A96 MRNA 3'-END-processing protein RNA15; transcriptio 94.82
4f25_A115 Polyadenylate-binding protein 1; RRM fold, transla 94.73
2d9p_A103 Polyadenylate-binding protein 3; RRM domain, struc 94.73
1h2v_Z156 20 kDa nuclear CAP binding protein; CAP-binding-co 94.73
2fy1_A116 RNA-binding motif protein, Y chromosome, family 1 94.72
1wi8_A104 EIF-4B, eukaryotic translation initiation factor 4 94.71
1x5t_A96 Splicing factor 3B subunit 4; structure genomics, 94.69
2dnq_A90 RNA-binding protein 4B; RRM domain,RBD, structural 94.66
1x4g_A109 Nucleolysin TIAR; structural genomics, RRM domain, 94.62
4a8x_A88 RNA-binding protein with serine-rich domain 1; tra 94.61
1oo0_B110 CG8781-PA, drosophila Y14; RNA recognition motif, 94.59
1x4h_A111 RNA-binding protein 28; structural genomics, RRM d 94.54
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 94.53
2cqb_A102 Peptidyl-prolyl CIS-trans isomerase E; RNA recogni 94.5
2la6_A99 RNA-binding protein FUS; structural genomics, nort 94.48
2a3j_A127 U1 small nuclear ribonucleoprotein A; computationa 94.21
2kxn_B129 Transformer-2 protein homolog beta; SR protein, RR 94.2
3ex7_B126 RNA-binding protein 8A; protein-RNA complex, mRNA 94.08
2dgx_A96 KIAA0430 protein; RRM domain, structural genomics, 94.08
1whx_A111 Hypothetical protein riken cDNA 1200009A02; RNA re 94.02
1x5o_A114 RNA binding motif, single-stranded interacting pro 94.01
1wf1_A110 RNA-binding protein RALY; structural genomics, RRM 94.0
1wex_A104 Hypothetical protein (riken cDNA 2810036L13); stru 93.99
2e44_A96 Insulin-like growth factor 2 mRNA binding protein 93.94
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 93.92
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 93.89
2kt5_A124 RNA and export factor-binding protein 2; chaperone 93.89
1wg1_A88 KIAA1579 protein, homolog EXC-7; RBD, structural g 93.84
3sde_A261 Paraspeckle component 1; RRM, anti parallel right 93.8
2cqp_A98 RNA-binding protein 12; RNA recognition motif, RRM 93.79
3lqv_A115 PRE-mRNA branch site protein P14; cysless mutant, 93.77
3smz_A284 Protein raver-1, ribonucleoprotein PTB-binding 1; 93.67
1p1t_A104 Cleavage stimulation factor, 64 kDa subunit; RNA r 93.65
3beg_B115 Splicing factor, arginine/serine-rich 1; kinase, S 93.64
2i2y_A150 Fusion protein consists of immunoglobin G- binding 93.63
2fc8_A102 NCL protein; structure genomics, RRM_1 domain, str 93.62
1why_A97 Hypothetical protein riken cDNA 1810017N16; RNA re 93.5
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 93.49
2cpi_A111 CCR4-NOT transcription complex subunit 4; RNA reco 93.46
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 93.44
2hvz_A101 Splicing factor, arginine/serine-rich 7; RRM, RNA 93.37
2jvo_A108 Nucleolar protein 3; nucleus, phosphorylation, rib 92.96
3ns6_A100 Eukaryotic translation initiation factor 3 subuni; 92.94
3n9u_C156 Cleavage and polyadenylation specificity factor S; 92.89
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 92.86
2kvi_A96 Nuclear polyadenylated RNA-binding protein 3; RNA- 92.85
1u6f_A139 Tcubp1, RNA-binding protein UBP1; trypanosome, mRN 92.83
2cpe_A113 RNA-binding protein EWS; RNA recognition motif, RR 92.8
2la4_A101 Nuclear and cytoplasmic polyadenylated RNA-bindin 92.71
1rk8_A165 CG8781-PA, CG8781-PA protein; mRNA processing, RRM 92.65
2ki2_A90 SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA 92.64
2f3j_A177 RNA and export factor binding protein 2; RRM domai 92.62
2j76_E100 EIF-4B, EIF4B, eukaryotic translation initiation f 92.54
2ek1_A95 RNA-binding protein 12; RNA recognition motif, dim 92.52
2g4b_A172 Splicing factor U2AF 65 kDa subunit; protein-RNA c 92.41
2adc_A229 Polypyrimidine tract-binding protein 1; RBD, RRM, 92.39
2lea_A135 Serine/arginine-rich splicing factor 2; SR protein 92.23
2e5g_A94 U6 snRNA-specific terminal uridylyltransferase 1; 92.17
2kn4_A158 Immunoglobulin G-binding protein G, splicing FACT 92.12
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 92.12
2dis_A109 Unnamed protein product; structural genomics, RRM 92.11
2dnl_A114 Cytoplasmic polyadenylation element binding protei 91.96
2xnq_A97 Nuclear polyadenylated RNA-binding protein 3; tran 91.94
3smz_A284 Protein raver-1, ribonucleoprotein PTB-binding 1; 91.48
1x4f_A112 Matrin 3; structural genomics, RRM domain, NPPSFA, 91.22
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 91.07
1nu4_A97 U1A RNA binding domain; RNA recognition motif, U1 90.8
2cpx_A115 Hypothetical protein FLJ11016; RRM domain, structu 90.76
1qm9_A198 Polypyrimidine tract-binding protein; ribonucleopr 90.53
2jvr_A111 Nucleolar protein 3; RNA recognition motif, nucleu 90.5
3q2s_C229 Cleavage and polyadenylation specificity factor S; 90.46
1fje_B175 Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin 89.78
3tyt_A205 Heterogeneous nuclear ribonucleoprotein L; ferredo 89.4
2pe8_A105 Splicing factor 45; RRM, protein binding; 2.00A {H 89.36
1fj7_A101 Nucleolin RBD1, protein C23; RNP, RRM, RNA binding 88.68
3bs9_A87 Nucleolysin TIA-1 isoform P40; RNA recognition mot 88.37
3s7r_A87 Heterogeneous nuclear ribonucleoprotein A/B; ferre 87.76
2ghp_A292 U4/U6 snRNA-associated splicing factor PRP24; RNA 87.45
2diu_A96 KIAA0430 protein; structural genomics, RRM domain, 87.38
2ywk_A95 Putative RNA-binding protein 11; RRM-domain, struc 87.36
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 87.29
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 86.94
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 86.44
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 85.16
3ucg_A89 Polyadenylate-binding protein 2; ferredoxin-like, 85.14
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 84.51
3pgw_A282 U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c 84.46
1s79_A103 Lupus LA protein; RRM, alpha/beta, RNA binding pro 84.34
2yh0_A198 Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli 83.96
3ulh_A107 THO complex subunit 4; nuclear protein, RNA bindin 83.42
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 83.29
2do0_A114 HnRNP M, heterogeneous nuclear ribonucleoprotein M 83.15
2ytc_A85 PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s 83.01
3sde_A261 Paraspeckle component 1; RRM, anti parallel right 82.89
1sjr_A164 Polypyrimidine tract-binding protein 1; extended b 81.6
2cpf_A98 RNA binding motif protein 19; RNA recognition moti 81.52
2dh8_A105 DAZ-associated protein 1; RRM domain, structural g 81.26
1x4e_A85 RNA binding motif, single-stranded interacting pro 81.1
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 80.69
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 80.46
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 80.33
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 80.2
2xs2_A102 Deleted in azoospermia-like; RNA binding protein-R 80.15
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=96.20  E-value=0.021  Score=46.96  Aligned_cols=72  Identities=15%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             CCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 048588           33 RQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSM  112 (615)
Q Consensus        33 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~  112 (615)
                      .....++|.|.|||.+.++   +.|+++|+.+.  .+.++.+.+                                    
T Consensus         5 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~v~~~~~~~------------------------------------   43 (90)
T 2dnp_A            5 SSGNTWKIFVGNVSAACTS---QELRSLFERRG--RVIECDVVK------------------------------------   43 (90)
T ss_dssp             SSCCSCCEEEESCCTTCCH---HHHHHHHHHHS--CEEEEEECS------------------------------------
T ss_pred             CCCCCCEEEEeCCCCCCCH---HHHHHHHHcCC--CEEEEEEEC------------------------------------
Confidence            4456789999999998765   77888887763  355554320                                    


Q ss_pred             cccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588          113 KTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA  173 (615)
Q Consensus       113 r~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A  173 (615)
                              |                    .|||+|.+..+|..|.+.+...  +...+.++.|
T Consensus        44 --------~--------------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   78 (90)
T 2dnp_A           44 --------D--------------------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS   78 (90)
T ss_dssp             --------S--------------------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             --------C--------------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence                    0                    7999999999999998876543  3345566665
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} Back     alignment and structure
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Back     alignment and structure
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Back     alignment and structure
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Back     alignment and structure
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* Back     alignment and structure
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Back     alignment and structure
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Back     alignment and structure
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 Back     alignment and structure
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Back     alignment and structure
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Back     alignment and structure
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Back     alignment and structure
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Back     alignment and structure
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Back     alignment and structure
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Back     alignment and structure
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Back     alignment and structure
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Back     alignment and structure
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Back     alignment and structure
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Back     alignment and structure
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Back     alignment and structure
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Back     alignment and structure
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Back     alignment and structure
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Back     alignment and structure
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Back     alignment and structure
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Back     alignment and structure
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B Back     alignment and structure
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Back     alignment and structure
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Back     alignment and structure
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Back     alignment and structure
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Back     alignment and structure
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Back     alignment and structure
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Back     alignment and structure
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Back     alignment and structure
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Back     alignment and structure
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Back     alignment and structure
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Back     alignment and structure
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Back     alignment and structure
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Back     alignment and structure
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Back     alignment and structure
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Back     alignment and structure
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Back     alignment and structure
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Back     alignment and structure
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Back     alignment and structure
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Back     alignment and structure
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Back     alignment and structure
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Back     alignment and structure
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Back     alignment and structure
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Back     alignment and structure
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Back     alignment and structure
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Back     alignment and structure
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Back     alignment and structure
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Back     alignment and structure
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Back     alignment and structure
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Back     alignment and structure
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Back     alignment and structure
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 96.76
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 96.55
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 96.53
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 96.53
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 96.52
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 96.31
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 96.26
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 96.2
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 96.11
d2b0ga183 Splicesomal U1A protein {Drosophila melanogaster [ 96.07
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 96.05
d2cpja186 Non-POU domain-containing octamer-binding protein, 95.99
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 95.98
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 95.95
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 95.94
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 95.83
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 95.74
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 95.72
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 95.69
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 95.68
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 95.68
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 95.63
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 95.53
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 95.49
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 95.47
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 95.46
d1whya_97 Putative RNA-binding protein 15B, Rbm15b {Mouse (M 95.31
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 95.25
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 95.11
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 94.92
d1u6fa1139 RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId 94.92
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 94.9
d1nu4a_91 Splicesomal U1A protein {Human (Homo sapiens) [Tax 94.8
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 94.77
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 94.65
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 94.59
d2disa196 Hypothetical protein FLJ20273 {Human (Homo sapiens 94.55
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 94.51
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 94.47
d1wg4a_98 Splicing factor, arginine/serine-rich 9 (SFRS9) {M 94.35
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 94.32
d2adca1109 Polypyrimidine tract-binding protein {Human (Homo 94.24
d1x4fa199 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 94.1
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 94.0
d2cpda186 APOBEC1 stimulating protein {Human (Homo sapiens) 93.98
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 93.83
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 93.74
d2cpia189 E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc 93.65
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 93.63
d1wf2a_98 Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu 93.61
d1x5oa1101 RNA-binding motif, single-stranded-interacting pro 93.52
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 93.28
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 93.09
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 93.07
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 92.47
d2cpxa1102 RNA-binding protein 41, RBM41 {Human (Homo sapiens 91.77
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 90.2
d2adba1108 Polypyrimidine tract-binding protein {Human (Homo 89.03
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 88.74
d1wi6a175 Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M 87.83
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 86.83
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 85.2
d2bz2a179 Negative elongation factor E, NELF-E {Human (Homo 84.42
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 83.44
d1x4ba1103 Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu 81.09
d1wg1a_88 Probable RNA-binding protein KIAA1579 {Human (Homo 81.0
d2cq1a188 Polypyrimidine tract-binding protein 2, PTBP2 {Hum 80.88
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 80.8
d1wexa_104 Heterogeneous nuclear ribonucleoprotein L-like {Mo 80.4
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0038  Score=50.44  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=57.6

Q ss_pred             CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588           35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT  114 (615)
Q Consensus        35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~  114 (615)
                      ..+.||.|.|||.+.++   +.|+++|+..  |.+.++.+.+|-                               .+.+ 
T Consensus         7 ~~~~tlfV~nLp~~~t~---~~l~~~F~~~--G~v~~v~~~~d~-------------------------------~tg~-   49 (93)
T d1x5ua1           7 NQDATVYVGGLDEKVSE---PLLWELFLQA--GPVVNTHMPKDR-------------------------------VTGQ-   49 (93)
T ss_dssp             CTTTEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCBCS-------------------------------SSCS-
T ss_pred             CCCCEEEEeCCCCcCCH---HHHHHHHHHh--CCccccceeecc-------------------------------cccc-
Confidence            45679999999998765   7889999877  457777665441                               0100 


Q ss_pred             cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC-CCCCc
Q 048588          115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA-PEPRD  178 (615)
Q Consensus       115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A-PeP~D  178 (615)
                                              .+=.|||.|.+..+|..|.+.+...  +...+.+++| |..+|
T Consensus        50 ------------------------~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~~~n   92 (93)
T d1x5ua1          50 ------------------------HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN   92 (93)
T ss_dssp             ------------------------BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred             ------------------------cccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCCC
Confidence                                    0016999999999999999887644  2346777776 44433
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure