Citrus Sinensis ID: 048589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MSWITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNTLRQQDSGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKRAS
Secondary Structure (PSIPRED)
ccEEEEEccccccccEEHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHcccccEEEEEEEccccccccEEEEEEccHHHHHHHHccccEEEEEEcccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccEccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHcccccEEEEEEccccccccEEEEEEccHHHHHHHHccccEEEEEEcccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mswitltvpelqEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWletegftnFVHESLKLTDSLRGLYGLALESALCLVcsdqesftcrdnnlplmsqvcgRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNnlnnhqvqvLEPAVQLLqpqvntlrqqdsgshlaseeandadtdrtlfatfskghpitrAELFEFFTRRygegcvedikmgncrdqsLYARVIVRSPAFITLILGENElmqfnihgkdvrvrrfvpkras
Flexible Loop (DISEMBL)
MSWITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNTLRQQDSGSHLaseeandadtDRTLFAtfskghpitrAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENelmqfnihgkdvrvrrfvpkras
Low Complexity Region (SEG)
MSWITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNTLRQQDSGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKRAS
Disordered region (IsUnstruct)
**WITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQ***************************TLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRF******
Disordered Region (DISOPRED)
MSWITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQES****DNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLR************************LRQQD***HLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVR*FVPK***
Disordered Region (DISEMBL)
MSWITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNT*****************ADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKRAS
Disordered Region (DISPRO)
MSWITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNTLRQQDSGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNTLRQQDSGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKRAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
255582979	328	conserved hypothetical protein [Ricinus	0.911	0.786	0.347	9e-37
297738566	312	unnamed protein product [Vitis vinifera]	0.936	0.849	0.326	9e-30
147801241	928	hypothetical protein VITISV_041246 [Viti	0.936	0.285	0.326	2e-29
356545768	290	PREDICTED: uncharacterized protein LOC10	0.865	0.844	0.343	7e-29
449452759	292	PREDICTED: uncharacterized protein LOC10	0.862	0.835	0.326	4e-27
357515811	310	hypothetical protein MTR_8g045420 [Medic	0.936	0.854	0.337	1e-26
449452176	338	PREDICTED: uncharacterized protein LOC10	0.925	0.775	0.310	1e-26
358348019	310	hypothetical protein MTR_117s0013 [Medic	0.936	0.854	0.325	1e-25
225447808	279	PREDICTED: uncharacterized protein LOC10	0.879	0.892	0.306	1e-25
15230634	300	uncharacterized protein [Arabidopsis tha	0.851	0.803	0.283	1e-25

>gi|255582979|ref|XP_002532259.1| conserved hypothetical protein [Ricinus communis] gi|223528047|gb|EEF30125.1| conserved hypothetical protein [Ricinus communis]

 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/319 (34%), Positives = 166/319 (52%), Gaps = 61/319 (19%)

Query: 16  TVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDS 75
           +VSL  L  FH IDR+ YA LV  L LD +LSK+I+AFW WLE +G+ +F+++ L L+ +
Sbjct: 4   SVSLELLTSFHNIDRQVYAILVIDLGLDPNLSKKIVAFWYWLEKKGYKDFINKVLLLSRA 63

Query: 76  LRGLYGLALESALCLVCSDQESFTCRDN-------NLPLMSQVCGRELSLEFVFQNNENA 128
              L  LA+E+  CL C     +    +        LP+M  +  ++ SL  ++ +  N 
Sbjct: 64  --ELNCLAMEAVTCLDCLYLGCYITTSSFHIDAYITLPVMCILVTQDFSLGELYADRTNG 121

Query: 129 KAYVTKFVRDVCDRAFIDYDLVLRNNL--------------------------NNHQVQV 162
              + +FV+DVCDR F  +D+  RN +                          N  QVQ 
Sbjct: 122 IITMERFVKDVCDRIF--FDIEPRNLVNGFHITPALADWFQIPPGFQIQPVMANGFQVQS 179

Query: 163 LEP-AVQLLQP--------QVNTLRQQDS----GSHLASEEANDAD---------TDRTL 200
           +E   V  +QP        QV+    +D+     S + S E N+A          TDRTL
Sbjct: 180 MEANGVDQVQPIVWHAKEAQVDYFPHRDNENEYHSKMVSGEENNATLDLSDVSNITDRTL 239

Query: 201 FATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGEN 260
           F TFSKGHPI++ EL +   R +G  CVE + M     + L+ARV+V S + +  ILG+ 
Sbjct: 240 FITFSKGHPISKEELRDLIERTFGT-CVEAVHM-RVDPEPLFARVVVNSVSVMAEILGDK 297

Query: 261 ELMQFNIHGKDVRVRRFVP 279
           ++++ + +GKDVRVRRF+P
Sbjct: 298 DIVKLSTNGKDVRVRRFIP 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738566|emb|CBI27811.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 145/288 (50%), Gaps = 23/288 (7%)

Query: 12  QEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLK 71
           Q  + V+      FH IDR+ Y  LV  L  D   S +I+AFW WLE  GF N V + L 
Sbjct: 3   QSLFYVTQEEFNMFHSIDRQLYTLLVVNLWRDPVESMQIIAFWLWLERSGFNNAVTKMLS 62

Query: 72  LTDSLRGLYGLALESALCLVC--SDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAK 129
           L   L  +  LA E+  CL C  +   S +   +++PL+  +  +E+ L+F   N   A 
Sbjct: 63  LPYIL--VNELADEALTCLNCISNHYPSSSPDSHDIPLIQSLMEKEIDLQFFHHNRVPAA 120

Query: 130 AYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNT-LRQQDSGSHL-- 186
             + K V++VC R   D   ++ + +  ++ Q +  +  ++ P V+T L +   G  +  
Sbjct: 121 QGIAKIVKEVCLRGLKD---IMDSAIERNKTQNVMESQMVVPPMVHTGLNKMGLGGMVDM 177

Query: 187 ----------ASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMG-- 234
                      + E      DRT+F TFSKG+P+   E+ EFF R YG+ C+E + M   
Sbjct: 178 GYGESEVGQPWNREIEVPPDDRTMFVTFSKGYPVYEWEVREFFGRSYGD-CIESLYMQEV 236

Query: 235 NCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKRA 282
              +QSL+AR++  S + I +IL      +F I+ K V  R+FVPKRA
Sbjct: 237 EANEQSLFARIVFHSASTIEMILNGMGKAKFTINAKHVWARKFVPKRA 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801241|emb|CAN72326.1| hypothetical protein VITISV_041246 [Vitis vinifera]

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 145/288 (50%), Gaps = 23/288 (7%)

Query: 12  QEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLK 71
           Q  + V+      FH IDR+ Y  LV  L  D   S +I+AFW WLE  GF N V + L 
Sbjct: 3   QSLFYVTQEEFNMFHSIDRQLYTLLVVNLWRDPVESMQIIAFWLWLERSGFNNAVTKMLS 62

Query: 72  LTDSLRGLYGLALESALCLVC--SDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAK 129
           L   L  +  LA E+  CL C  +   S +   +++PL+  +  +E+ L+F   N   A 
Sbjct: 63  LPYIL--VNELADEALTCLNCISNHYPSSSPDSHDIPLIQSLMEKEIDLQFFHHNRVPAA 120

Query: 130 AYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNT-LRQQDSGSHL-- 186
             + K V++VC R   D   ++ + +  ++ Q +  +  ++ P V+T L +   G  +  
Sbjct: 121 QGIAKIVKEVCLRGLKD---IMDSAIERNKTQNVMESQMVVPPMVHTGLNKMGLGGMVDM 177

Query: 187 ----------ASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMG-- 234
                      + E      DRT+F TFSKG+P+   E+ EFF R YG+ C+E + M   
Sbjct: 178 GYGESEVGQPWNREIEVPPDDRTMFVTFSKGYPVYEWEVREFFGRSYGD-CIESLYMQEV 236

Query: 235 NCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKRA 282
              +QSL+AR++  S + I +IL      +F I+ K V  R+FVPKRA
Sbjct: 237 EANEQSLFARIVFHSASTIEMILNGMGKAKFTINAKHVWARKFVPKRA 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545768|ref|XP_003541307.1| PREDICTED: uncharacterized protein LOC100785116 [Glycine max]

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 138/274 (50%), Gaps = 29/274 (10%)

Query: 25  FHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLAL 84
           FH +DRE Y  LV  L  D   S ++ A W WLE  GF N V   L L + L  +  +A 
Sbjct: 17  FHRMDRELYKILVVSLFRDPEESMQVHAMWLWLERVGFRNVVKRVLALPNIL--INDVAD 74

Query: 85  ESALCLVCSDQES-----FTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDV 139
           E+ +CL C +        F+   + +PL+  +  +E+SL+FV++N  +A   V K ++DV
Sbjct: 75  ETVMCLNCINNSLLMSCLFSSESSEIPLLQSLVEKEISLQFVYENRSSALQGVAKVMQDV 134

Query: 140 CDRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNTLRQ--------QDSGSH--LASE 189
           C RAF D            Q  +   A    Q  V T RQ        ++   H  L   
Sbjct: 135 CVRAFTDI---------MEQAMIRNSAEAAAQKVVTTTRQSSSSSSSSENYNYHHGLVWF 185

Query: 190 EANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCR--DQSLYARVIV 247
            +     DRTLF TFSKG+ +   E+ EFF   YG+ C+E + M   +  +Q+L+AR++ 
Sbjct: 186 GSIGPAEDRTLFVTFSKGYRVEEWEVREFFALAYGD-CIEALFMQEVQPNEQALFARIVF 244

Query: 248 RSPAFITLILGENELMQFNIHGKDVRVRRFVPKR 281
           R+ + I +IL      +F I+GK V  R+FVPKR
Sbjct: 245 RAVSTIDMILRGANKAKFIINGKHVWARKFVPKR 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452759|ref|XP_004144126.1| PREDICTED: uncharacterized protein LOC101210194, partial [Cucumis sativus] gi|449500558|ref|XP_004161130.1| PREDICTED: uncharacterized LOC101210194, partial [Cucumis sativus]

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 132/263 (50%), Gaps = 19/263 (7%)

Query: 25  FHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYGLAL 84
           FH IDR+ Y  L   +  D   S +I+AFW WLE  GF + V   L+L   L        
Sbjct: 17  FHKIDRQLYTILAINIGRDPIESLQIMAFWLWLERVGFRHVVFRLLRLPVLLINELAEEA 76

Query: 85  ESALCLVCSDQESFTCRD----NNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVC 140
            +AL  + SD       D     N+PL      +E+SL+F++ N   A   V K   +VC
Sbjct: 77  LAALACIVSDHPPPPSSDEYNNTNIPLTQNFMKKEISLQFLYANRHTAFEGVAKIRNEVC 136

Query: 141 DRAFIDYDLVLRNNLNNHQVQVLEPAVQLLQPQVNTLRQQDSGSHLASEEANDADTDRTL 200
            RA    D++LR  L++ Q+      V         L    SG  L ++   +   +R +
Sbjct: 137 FRAM--KDIMLR-ALSHRQISAAAAVV------TAPLPPPPSGGDLQTQVPPE---ERAM 184

Query: 201 FATFSKGHPITRAELFEFFTRRYGEGCVEDIKMG--NCRDQSLYARVIVRSPAFITLILG 258
           F TFSKG+P+   E+ +FF   YG+ C+E+ +M      +Q+L+AR++ + P+ I LIL 
Sbjct: 185 FVTFSKGYPVHEWEVKDFFNTNYGD-CIENFQMQEVEANEQALFARIVFKFPSTIDLILR 243

Query: 259 ENELMQFNIHGKDVRVRRFVPKR 281
               M+F I+GK +  R+F+PK+
Sbjct: 244 GQPRMKFTINGKHIWARKFIPKQ 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515811|ref|XP_003628194.1| hypothetical protein MTR_8g045420 [Medicago truncatula] gi|355522216|gb|AET02670.1| hypothetical protein MTR_8g045420 [Medicago truncatula]

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 151/302 (50%), Gaps = 37/302 (12%)

Query: 4   ITLTVPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFT 63
           ++ TVP  QE + +       FH +DR+ Y  LV +L+ D   S R+LA W WLE  GF 
Sbjct: 5   LSFTVP--QEDFLL-------FHQVDRDLYKILVTELSRDPSESMRLLAMWLWLEKVGFH 55

Query: 64  NFVHESLKLTDSLRGLYGLALESALCLVCSDQES--------FTCRDNNLPLMSQVCGRE 115
           N V   + L   L  +  +A E+ LCL C    S         +   N++PL+  V   E
Sbjct: 56  NVVKNIMSLPIIL--INEIADETMLCLTCLTNNSNTSLTTIMLSSEANDIPLLQSVMENE 113

Query: 116 LSLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLE---------PA 166
           +SL+F  QN   A   V K  ++VC RAF   D++ R  + N   +++E           
Sbjct: 114 ISLKFFRQNCMEAIHGVEKTRKEVCMRAF--GDIMQRAMMRNIAERMVENNNFLFGSTGP 171

Query: 167 VQLLQPQV---NTLRQQDSGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRY 223
           + L    V     L QQ S ++        AD +RTLF TFSKG+ +   E+ EFFT  Y
Sbjct: 172 INLQFGSVGIAGALGQQHSNNNGGRGGIIPAD-ERTLFVTFSKGYRVEEWEVREFFTMAY 230

Query: 224 GEGCVEDIKMGNCR--DQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKR 281
           G+ C+E + M   +  +Q L+ R+I    + I +IL     ++F+I+ K V VR+FVPKR
Sbjct: 231 GD-CIETLFMQETQPNEQPLFGRIIFHKVSTIDMILKGASKVKFSINRKHVWVRKFVPKR 289

Query: 282 AS 283
            +
Sbjct: 290 TN 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452176|ref|XP_004143836.1| PREDICTED: uncharacterized protein LOC101221230 [Cucumis sativus]

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 141/309 (45%), Gaps = 47/309 (15%)

Query: 15  YTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEG-FTNFVHESLKLT 73
           YT++      FH IDR  ++++VF L  +   S R++ FW WLE  G  +N VH+ L L 
Sbjct: 15  YTITQEEFNLFHTIDRSLFSRMVFSLGREPEESVRVMGFWLWLEKYGEESNLVHKMLGLP 74

Query: 74  DSLRGLYGLALESALCLVCSDQESFTCRDN---NLPLMSQVCGRELSLEFVFQNNENAKA 130
           D L  +  L  E+ + L C   + F    +   ++PL+  V    +SL FV  N      
Sbjct: 75  DVL--VDALCDEAVISLACIQNDKFPFEPDSTLDIPLIQHVSKTPVSLRFVHHNRLEILP 132

Query: 131 YVTKFVRDVCDRAFIDY--DLVLRNNLNNHQVQVLEPAVQ------------------LL 170
            V K   D+C RAF+D    L  R  ++     V  PAVQ                    
Sbjct: 133 GVAKMCNDICRRAFLDILQTLHTRRAISRAPAAVSIPAVQGEGGGRGRVFEGAPPVTNFF 192

Query: 171 QPQVNTLR-----------------QQDSGSHLASEEANDADTDRTLFATFSKGHPITRA 213
            P    L                  +  SG      E   AD  RT+F TFSKG+PI+  
Sbjct: 193 VPSFGFLGLGGECSTAAIRSGMSSLELKSGKEEQEGEVVPAD-QRTIFLTFSKGYPISED 251

Query: 214 ELFEFFTRRYGEGCVEDIKM--GNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271
           E+ ++F RRYG   +E I M   +  +Q LYAR++V++ + I L+L      +F+I+GK 
Sbjct: 252 EVRDYFGRRYGN-FIESIHMQEAHPPEQPLYARLVVKTESSIDLVLEARTKAKFSINGKH 310

Query: 272 VRVRRFVPK 280
           V  R++V K
Sbjct: 311 VWARKYVRK 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348019|ref|XP_003638047.1| hypothetical protein MTR_117s0013 [Medicago truncatula] gi|355503982|gb|AES85185.1| hypothetical protein MTR_117s0013 [Medicago truncatula]

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 146/289 (50%), Gaps = 24/289 (8%)

Query: 15  YTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTD 74
           +T+S      FH  DR+ Y  LV  L+ D + S ++LA W WLE  GF + V + + L  
Sbjct: 7   FTLSQEDFLLFHKSDRDLYNILVTNLSRDPYKSAQLLAMWLWLERVGFHDVVKKIVSLPV 66

Query: 75  SLRGLYGLALESALCLVC-------SDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNEN 127
            L  +  + +ES +CL C       S  E     +N++PL+  +  +E+SL+F  +N   
Sbjct: 67  IL--IDEIVVESMMCLSCITNNNNTSQIEKSYYEENDIPLLQSLMDKEISLKFFLENRVE 124

Query: 128 AKAYVTKFVRDVCDRAFIDY--DLVLRN------NLNNHQVQVLEPAVQLLQP---QVNT 176
           A   V K  ++VC RA  D     ++RN      N NN     + PA     P       
Sbjct: 125 AIRGVEKTEKEVCMRALSDIMQQAIMRNMTHRMMNNNNFWFGSIGPANLQFGPVRIDGAI 184

Query: 177 LRQQDSGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNC 236
           ++QQ++ +     E   A+ DRTLF TFSKG  +   E+  FFT  YG+ C+E + M   
Sbjct: 185 VQQQNNNNEGRGGEIIPAE-DRTLFVTFSKGCHVEEWEVKNFFTMVYGD-CIEALFMQKT 242

Query: 237 --RDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFVPKRAS 283
              +Q+L+AR+++     I +IL  +   +F I+GK +  R+FVPKR +
Sbjct: 243 APNEQALFARIVLHKVDTIDMILRGHSKAKFFINGKHIWARKFVPKRVN 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447808|ref|XP_002267816.1| PREDICTED: uncharacterized protein LOC100241880 [Vitis vinifera] gi|147767182|emb|CAN66961.1| hypothetical protein VITISV_013140 [Vitis vinifera]

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 38/287 (13%)

Query: 15  YTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTD 74
           + + L  L  FH +DR+ +++L+         +  ++A W WLE  G+ N V + L L D
Sbjct: 3   FKIPLRELLSFHSVDRQIFSRLILNCLRKPSETLLVMAMWLWLEEIGYPNIVAKILILPD 62

Query: 75  SLRGLYGLALESALCLVCSDQESFTCR--DNNLPLMSQVCGRELSLEFVFQNNENAKAYV 132
           S+  +  +A E+ LCL C   +S   R    NLPL S+    E+SL+  FQN   A + +
Sbjct: 63  SI--VNAIANEAVLCLKCLSSDSPPPRLPSGNLPLSSRAMEMEISLQMFFQNKFTAISGI 120

Query: 133 TKFVRDVCDRAFIDYDLVLRNNLNNHQVQVLEPAVQLL--QPQVN-------------TL 177
            KF+  VC  AF D             VQVL  A Q+L  QP                 L
Sbjct: 121 KKFLNSVCSWAFTDI-----------LVQVLPSASQVLLNQPVAVPGFPHPLFGNVTIVL 169

Query: 178 RQQD-----SGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIK 232
           R  D      G H  +        DRT+F TFS+G+ ++ +++ E FT  +G+ CV+ + 
Sbjct: 170 RSLDYSFPIGGLHGWNPTTEAPVDDRTMFLTFSRGNKVSESDVRELFTGLFGD-CVDSVN 228

Query: 233 MGNC--RDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRF 277
           M       Q L+AR+++RS + +  IL  + + +F I+ K V  R++
Sbjct: 229 MEEVSRNRQPLFARLVLRSVSTVDRILNGSSIAKFTINSKHVWARKY 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230634|ref|NP_190106.1| uncharacterized protein [Arabidopsis thaliana] gi|6911858|emb|CAB72158.1| putative protein [Arabidopsis thaliana] gi|91805541|gb|ABE65499.1| hypothetical protein At3g45200 [Arabidopsis thaliana] gi|332644482|gb|AEE78003.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 140/303 (46%), Gaps = 62/303 (20%)

Query: 22  LQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTNFVHESLKLTDSLRGLYG 81
           L  FH  DRE ++KLV + +     S  ++A W WLE  GF N     L LTD L  + G
Sbjct: 9   LHVFHAQDREIFSKLVLKFSRPPAESLLVMATWLWLEDFGFENIFSIILTLTDPL--IAG 66

Query: 82  LALESALCLVCSDQESFTCRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRDVCD 141
           LA E+  C  C    +       +PL ++   + +SL+ +++N  +A   +  F+  VC 
Sbjct: 67  LAYEAVSCFQCLSLNNPPI--GRIPLTTKYLKKNISLQMIYKNRYSAITGIKNFLTTVCT 124

Query: 142 RAFIDYDLVLRNNLNNHQVQVLEPA------VQLLQP------------QVNTLRQQDSG 183
           R F D  ++LR         VL P+       +L QP             +N +  +   
Sbjct: 125 RIFTD--ILLR---------VLPPSSMSSFDARLRQPLQIPGFPHPIFGSINVMPNEVDR 173

Query: 184 SHLASEEAN----------------DADTDRTLFATFSKGHPITRAELFEFFTRRYGEGC 227
            + +++  N                  + DRTLF TFS+G+P+T AE+ E FT+ YGE C
Sbjct: 174 DNFSNKNNNLFFIPNGLWGWNANCIATENDRTLFLTFSRGYPVTHAEIIELFTKEYGENC 233

Query: 228 VEDIKMG-------------NCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRV 274
           VE + M              +C  QSL+AR+++ S   +  +L + +  +  I+GK++  
Sbjct: 234 VEGVYMQHDNKRSFNANANRSCEQQSLFARLVLDSVTTVDRVLDDEQKKELMIYGKNIWA 293

Query: 275 RRF 277
           R++
Sbjct: 294 RKY 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2096890	300	AT3G45200 "AT3G45200" [Arabido	0.293	0.276	0.364	6.9e-26
TAIR|locus:2173224	301	AT5G13620 "AT5G13620" [Arabido	0.886	0.833	0.302	7.6e-25
TAIR|locus:2147942	265	AT5G11220 "AT5G11220" [Arabido	0.293	0.313	0.364	2.1e-19
TAIR|locus:2010881	304	AT1G64870 "AT1G64870" [Arabido	0.293	0.273	0.360	5.2e-19
TAIR|locus:2010277	338	AT1G49290 "AT1G49290" [Arabido	0.597	0.5	0.302	8.6e-10
TAIR|locus:504954994	113	AT5G24355 "AT5G24355" [Arabido	0.289	0.725	0.329	1.1e-06

TAIR|locus:2096890 AT3G45200 "AT3G45200" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 6.9e-26, Sum P(2) = 6.9e-26
 Identities = 35/96 (36%), Positives = 57/96 (59%)

Query:   195 DTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGN-------------CRDQSL 241
             + DRTLF TFS+G+P+T AE+ E FT+ YGE CVE + M +             C  QSL
Sbjct:   201 ENDRTLFLTFSRGYPVTHAEIIELFTKEYGENCVEGVYMQHDNKRSFNANANRSCEQQSL 260

Query:   242 YARVIVRSPAFITLILGENELMQFNIHGKDVRVRRF 277
             +AR+++ S   +  +L + +  +  I+GK++  R++
Sbjct:   261 FARLVLDSVTTVDRVLDDEQKKELMIYGKNIWARKY 296

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2173224 AT5G13620 "AT5G13620" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 83/274 (30%), Positives = 143/274 (52%)

Query:    25 FHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGF-TNFVHESLKLTDSLRGLYGLA 83
             FH  DR  + + V +L  D + S ++++F  +LE  G  +N +     L D    +  +A
Sbjct:    18 FHKCDRALFRRFVVRLRRDINQSLQVMSFLLYLEKSGLVSNLIVNFNSLPDFF--INTVA 75

Query:    84 LESALCLVCSDQESFTCRDNN-----LPLMSQVCGRELSLEFVFQNNENAKAYVTKFVRD 138
              E  +CL C   E+F+    N     +PL++++ G  L+L  + QN E+    + K +  
Sbjct:    76 DEVVMCLSCLSYENFSMFVANFGKKIIPLITRMTGEYLTLAVIHQNRESILLDMKKHLTS 135

Query:   139 VCDRAFIDY------DLVLRN--NLN-NHQVQVLEPAVQLLQPQVNTLRQQDSGSHLASE 189
             +C  AF D       + V+ +  +L  +  V     + Q L  Q  T R    G  + SE
Sbjct:   136 ICYPAFEDICVQAEKEKVIEDMKHLGFSKAVHKAGSSSQFLSEQQATTRTSKVG--VFSE 193

Query:   190 EANDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKM--GNCRDQSLYARVIV 247
             +    + DRT+F TFS+G+P++ AE+  +FTRR+GE  +E I M  G   +Q+LYA++++
Sbjct:   194 DEQAREDDRTVFLTFSRGYPLSEAEVHAYFTRRFGE-IIEAIIMPGGEGNEQALYAKMVL 252

Query:   248 RSPAFITLILGEN-ELMQFNIHGKDVRVRRFVPK 280
              S A I  I+ +  E  ++ I+GK V  R+++P+
Sbjct:   253 HSAAMIPEIVSDGIERNKYTINGKHVWARKYIPR 286

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147942 AT5G11220 "AT5G11220" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 35/96 (36%), Positives = 58/96 (60%)

Query:   195 DTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKM-----------GNC--RDQSL 241
             D +RT+F TFS+G P+++AE+  FFT+ YGE CVE + M           GN   + QSL
Sbjct:   164 DNERTMFITFSRGFPVSQAEVKRFFTKNYGENCVEGVYMKEDNKNFLNANGNDNGQQQSL 223

Query:   242 YARVIVRSPAFITLILGENELMQFNIHGKDVRVRRF 277
             +A++++ S A +  IL   ++ +F  +GK +  R++
Sbjct:   224 FAKLVLNSVATVDRILDGEKIKRFKSNGKHIWARKY 259

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010881 AT1G64870 "AT1G64870" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
 Identities = 35/97 (36%), Positives = 54/97 (55%)

Query:   195 DTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKM---G--------NC---RDQS 240
             D +RT+F TFS+G P++ AE+   FT  YGE CVE + M   G        NC   + Q 
Sbjct:   200 DKERTVFLTFSRGFPVSHAEVIHLFTEIYGEDCVESVYMPEDGGNSSNDNTNCNGHQQQP 259

Query:   241 LYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRF 277
             L+A++++ S   +  IL   E  ++ I+GK +  R+F
Sbjct:   260 LFAKMVLDSVVTVDRILSGQEKQKYKINGKHIWARKF 296

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010277 AT1G49290 "AT1G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 56/185 (30%), Positives = 91/185 (49%)

Query:   109 SQVCGRELS--LEFVFQ-NNENAKAYVT-KFVRDVCDRAFIDYDLVLRNNLNNHQVQVLE 164
             + VC R  S   E   + N E   A    KF+ D+  +  +       N L+  QV++  
Sbjct:   146 TDVCTRAFSDLCETAHRINREKQLALEREKFIEDM-KKLRLSLQQEKSNRLSVQQVKIAS 204

Query:   165 PAVQLLQPQVN-----TLRQQDSGSHLASEEANDADTDRTLFATFSKGHPITRAELFEFF 219
             P      P V       LR++++      E    AD DRT+F TFSKG+PI+ AE+  +F
Sbjct:   205 PPPPRPHPPVEDETEKALREKETMEVKEKEGVLAAD-DRTVFLTFSKGYPISEAEVRVYF 263

Query:   220 TRRYGEGCVEDIKMGN--CRDQSLYARVIVR--SPAFITLILGENELMQFNIHGKDVRVR 275
             TRR+GE  +E ++M      +Q L+A+++++    + +  I+      +F I GK V  R
Sbjct:   264 TRRFGE-VIEAVEMQEVEANEQPLFAKMVMKLQCASMMDEIVSARFRNKFTIDGKHVWAR 322

Query:   276 RFVPK 280
             ++V K
Sbjct:   323 KYVRK 327

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:504954994 AT5G24355 "AT5G24355" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 29/88 (32%), Positives = 58/88 (65%)

Query:   193 DADTDRTLFATFSKGHPITRAELF-EFFTRRYGEGCVEDIKM--GNCRDQSLYARVIVRS 249
             DA+ +RTL+ TF +G P+++ E+  + FT +YGE CV+ I M   + ++Q+L+A++++ S
Sbjct:    14 DAN-ERTLYITFPRGVPMSQEEVIKQCFTEQYGENCVQGIDMQHDDGQEQALFAKLVLDS 72

Query:   250 PAFITLILGENELMQ-FNIHGKD-VRVR 275
              A +  +L   E ++ +++   D V++R
Sbjct:    73 VATMNRVLNHWETVKLWSLSENDSVKLR 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       283   0.00084  115 3  11 22  0.44    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  216 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.26u 0.16s 25.42t   Elapsed:  00:00:01
  Total cpu time:  25.26u 0.16s 25.42t   Elapsed:  00:00:01
  Start:  Sat May 11 08:44:45 2013   End:  Sat May 11 08:44:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT3G45200 unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G64870.1); Has 41 Blast hits to 41 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (300 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	98.07
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	97.96
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	97.83
PLN03120	260	nucleic acid binding protein; Provisional	97.82
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	97.81
smart00362	72	RRM_2 RNA recognition motif.	97.71
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	97.69
smart00360	71	RRM RNA recognition motif.	97.63
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	97.62
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	97.58
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.58
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.47
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.35
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.34
PLN03121	243	nucleic acid binding protein; Provisional	97.24
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.24
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.21
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.12
COG0724	306	RNA-binding proteins (RRM domain) [General functio	97.12
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.06
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	96.97
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	96.91
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	96.88
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	96.85
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	96.75
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	96.43
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	96.15
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	95.99
smart00361	70	RRM_1 RNA recognition motif.	95.67
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	95.35
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	95.1
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	94.41
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	94.28
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	93.03
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	92.24
PLN03213	759	repressor of silencing 3; Provisional	91.14
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	90.9
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	90.28
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	90.24
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	89.34
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	89.26
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	88.76
KOG4207	256	consensus Predicted splicing factor, SR protein su	88.46
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	86.95
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	85.64
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	85.17
KOG1457	284	consensus RNA binding protein (contains RRM repeat	84.26
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	81.75

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=98.07  E-value=5.3e-06  Score=79.42  Aligned_cols=78  Identities=23%  Similarity=0.401  Sum_probs=67.9

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhC-CCCeeeEEEcCcee
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILG-ENELMQFNIHGKDV  272 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~-g~~~~kf~Ingk~i  272 (283)
                      +|+ ..|.+|.|  ++++|+++||++ ||- ..+.+.|-+  ..+...||+|.|.+++.||.++. -.+    .+|||.+
T Consensus        96 ~tk-kiFvGG~~~~~~e~~~r~yfe~-~g~-v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~----~~~gk~v  168 (311)
T KOG4205|consen   96 RTK-KIFVGGLPPDTTEEDFKDYFEQ-FGK-VADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFH----DFNGKKV  168 (311)
T ss_pred             cee-EEEecCcCCCCchHHHhhhhhc-cce-eEeeEEeecccccccccceeeEeccccccceeccccee----eecCcee
Confidence            455 66668999  999999999997 996 677778877  79999999999999999999998 344    8999999


Q ss_pred             EEEecccCCC
Q 048589          273 RVRRFVPKRA  282 (283)
Q Consensus       273 WaRky~pk~~  282 (283)
                      -+++++||..
T Consensus       169 evkrA~pk~~  178 (311)
T KOG4205|consen  169 EVKRAIPKEV  178 (311)
T ss_pred             eEeeccchhh
Confidence            9999999864

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=97.96  E-value=2.7e-05  Score=72.05  Aligned_cols=71  Identities=24%  Similarity=0.349  Sum_probs=60.3

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhC-CCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILG-ENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~-g~~~~kf~Ingk~  271 (283)
                      |-|.=+.|.+|.|  -+.+++++||++ ||| .+|+|.+-|  +++..+||+|+|+..+...+... -+.    .|+||.
T Consensus         9 DT~~TKifVggL~w~T~~~~l~~yFeq-fGe-I~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p----iIdGR~   82 (247)
T KOG0149|consen    9 DTTFTKIFVGGLAWETHKETLRRYFEQ-FGE-IVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP----IIDGRK   82 (247)
T ss_pred             CceEEEEEEcCcccccchHHHHHHHHH-hCc-eEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC----cccccc
Confidence            3355578999999  678899999997 999 999999998  89999999999999998777766 455    788887


Q ss_pred             eE
Q 048589          272 VR  273 (283)
Q Consensus       272 iW  273 (283)
                      .=
T Consensus        83 aN   84 (247)
T KOG0149|consen   83 AN   84 (247)
T ss_pred             cc
Confidence            53

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=97.83  E-value=0.00014  Score=61.87  Aligned_cols=81  Identities=20%  Similarity=0.225  Sum_probs=62.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .....+++||   ++.|  +||++|+++|.. ||+  |+++.|..   +++...||.|.|.+++.++.+|...+  ...|
T Consensus        30 ~~~~~~~lfV---gnL~~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln--g~~i  101 (144)
T PLN03134         30 LRLMSTKLFI---GGLSWGTDDASLRDAFAH-FGD--VVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD--GKEL  101 (144)
T ss_pred             ccCCCCEEEE---eCCCCCCCHHHHHHHHhc-CCC--eEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC--CCEE
Confidence            3455678888   6888  999999999996 998  76766653   67889999999999999999886432  1278


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+-+..-.+++
T Consensus       102 ~Gr~l~V~~a~~~~  115 (144)
T PLN03134        102 NGRHIRVNPANDRP  115 (144)
T ss_pred             CCEEEEEEeCCcCC
Confidence            99998766555443

>PLN03120 nucleic acid binding protein; Provisional

Probab=97.82  E-value=0.0001  Score=69.19  Aligned_cols=69  Identities=23%  Similarity=0.276  Sum_probs=55.8

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC--CCCeeeEEEcCcee
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG--ENELMQFNIHGKDV  272 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~--g~~~~kf~Ingk~i  272 (283)
                      -||+||   +|.|  ++|+||++||.. ||+  |++|.|...++...||+|.|.+++..+..|.  |.     .|+|+.+
T Consensus         4 ~rtVfV---gNLs~~tTE~dLrefFS~-~G~--I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~-----~l~gr~V   72 (260)
T PLN03120          4 VRTVKV---SNVSLKATERDIKEFFSF-SGD--IEYVEMQSENERSQIAYVTFKDPQGAETALLLSGA-----TIVDQSV   72 (260)
T ss_pred             CCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCC-----eeCCceE
Confidence            578888   8888  999999999986 998  9999997745567899999999888666554  42     6889988


Q ss_pred             EEEe
Q 048589          273 RVRR  276 (283)
Q Consensus       273 WaRk  276 (283)
                      -+..
T Consensus        73 ~Vt~   76 (260)
T PLN03120         73 TITP   76 (260)
T ss_pred             EEEe
Confidence            5443

>PF14259 RRM_6: RNA recognition motif (a

Probab=97.81  E-value=3.3e-05  Score=56.00  Aligned_cols=62  Identities=24%  Similarity=0.315  Sum_probs=50.7

Q ss_pred             CCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          206 KGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       206 ~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      +|.|  ++++||+++|.+ ||+  |+.|.|..  .++...+|.|.|.|++...+++.-.+  +..++||++
T Consensus         4 ~nlp~~~~~~~l~~~f~~-~g~--v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~--~~~~~g~~l   69 (70)
T PF14259_consen    4 SNLPPSTTEEDLRNFFSR-FGP--VEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN--GKEIDGRKL   69 (70)
T ss_dssp             ESSTTT--HHHHHHHCTT-SSB--EEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT--TEEETTEEE
T ss_pred             eCCCCCCCHHHHHHHHHh-cCC--cceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC--CcEECCEEc
Confidence            6778  999999999998 887  88999887  35678999999999999999988433  458899987

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>smart00362 RRM_2 RNA recognition motif

Probab=97.71  E-value=0.00027  Score=48.82  Aligned_cols=64  Identities=22%  Similarity=0.342  Sum_probs=49.1

Q ss_pred             CCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEE
Q 048589          206 KGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRV  274 (283)
Q Consensus       206 ~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWa  274 (283)
                      +|.|  .+++||+++|.+ ||+  +..+.|.. .+....||.|.|.+.+..+.++...+.  ..|+|+++=+
T Consensus         5 ~~l~~~~~~~~l~~~~~~-~g~--v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~--~~~~~~~i~v   71 (72)
T smart00362        5 GNLPPDVTEEDLKELFSK-FGP--IESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNG--TKLGGRPLRV   71 (72)
T ss_pred             cCCCCcCCHHHHHHHHHh-cCC--EEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCC--cEECCEEEee
Confidence            6777  899999999985 998  55666654 455678999999999998888764433  3568887644

>PF00076 RRM_1: RNA recognition motif

Probab=97.69  E-value=8.4e-05  Score=52.78  Aligned_cols=63  Identities=29%  Similarity=0.386  Sum_probs=49.5

Q ss_pred             cCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          205 SKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       205 S~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      .+|.|  ++++||+++|.+ ||+  |+.+.|..  .+....||.|.|.+.+..+.++..-+.  ..++|+.+
T Consensus         3 v~nlp~~~t~~~l~~~f~~-~g~--i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g--~~~~~~~i   69 (70)
T PF00076_consen    3 VGNLPPDVTEEELRDFFSQ-FGK--IESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG--KKINGRKI   69 (70)
T ss_dssp             EESETTTSSHHHHHHHHHT-TST--EEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEE
T ss_pred             EcCCCCcCCHHHHHHHHHH-hhh--cccccccccccccccceEEEEEcCHHHHHHHHHHcCC--CEECccCc
Confidence            37888  999999999998 999  55665554  788899999999999998888772221  36777654

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>smart00360 RRM RNA recognition motif

Probab=97.63  E-value=0.0003  Score=48.28  Aligned_cols=63  Identities=22%  Similarity=0.373  Sum_probs=48.4

Q ss_pred             Ccc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEE
Q 048589          207 GHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRV  274 (283)
Q Consensus       207 G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWa  274 (283)
                      |.|  ++++||+++|.+ ||+  |+.+.+..   +++...||.|.|.+.+....++...+  ...++|+++=+
T Consensus         3 ~l~~~~~~~~l~~~f~~-~g~--v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~--~~~~~~~~~~v   70 (71)
T smart00360        3 NLPPDVTEEELRELFSK-FGK--IESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN--GKELDGRPLKV   70 (71)
T ss_pred             CCCcccCHHHHHHHHHh-hCC--EeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC--CCeeCCcEEEe
Confidence            445  899999999985 998  66677665   35667799999999999998887554  33558887643

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=97.62  E-value=7.1e-05  Score=71.74  Aligned_cols=77  Identities=22%  Similarity=0.425  Sum_probs=69.5

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCC-CCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGE-NELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g-~~~~kf~Ingk  270 (283)
                      |...+|+   .|..  .+++.+++||+ +||+ .+|.+.|.+  +++.+.||+|.|.++.-++++|+- .+    .|.||
T Consensus         5 ~~~Klfi---Ggisw~ttee~Lr~yf~-~~Ge-v~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h----~~dgr   75 (311)
T KOG4205|consen    5 ESGKLFI---GGLSWETTEESLREYFS-QFGE-VTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH----KLDGR   75 (311)
T ss_pred             CCcceee---cCcCccccHHHHHHHhc-ccCc-eeeEEEeccCCCCCcccccceecCCCcchheeeccccc----ccCCc
Confidence            6678888   8888  99999999995 5999 999999998  899999999999999999999995 44    89999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .|-..+-+|+.
T Consensus        76 ~ve~k~av~r~   86 (311)
T KOG4205|consen   76 SVEPKRAVSRE   86 (311)
T ss_pred             cccceeccCcc
Confidence            99999999875

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=97.58  E-value=0.00032  Score=67.11  Aligned_cols=76  Identities=18%  Similarity=0.277  Sum_probs=61.9

Q ss_pred             CCCCCCceEEEEccC-CccCCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSK-GHPITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~-G~Pvse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..-+-.+||||.  + .|-.+|++|+..|++ ||+  |++|.|=.   ++.+.+||+|+|..+..+...--  +..=..|
T Consensus        96 a~gDPy~TLFv~--RLnydT~EskLrreF~~-YG~--IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK--~adG~~I  168 (335)
T KOG0113|consen   96 AIGDPYKTLFVA--RLNYDTSESKLRREFEK-YGP--IKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYK--DADGIKI  168 (335)
T ss_pred             ccCCccceeeee--eccccccHHHHHHHHHh-cCc--ceeEEEeeecccCCccceEEEEeccHHHHHHHHH--hccCcee
Confidence            455789999983  4 688999999999997 999  99998875   89999999999999988765554  3334579


Q ss_pred             cCceeEE
Q 048589          268 HGKDVRV  274 (283)
Q Consensus       268 ngk~iWa  274 (283)
                      +|+.|-+
T Consensus       169 dgrri~V  175 (335)
T KOG0113|consen  169 DGRRILV  175 (335)
T ss_pred             cCcEEEE
Confidence            9998743

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.58  E-value=0.0005  Score=64.15  Aligned_cols=77  Identities=21%  Similarity=0.276  Sum_probs=58.6

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      ..++||   ++.|  ++|+||+++|.+ ||+  |.+|.+ .+  .++..+||+|-|.+.+..+..|..-+.  ..|.||.
T Consensus         3 ~~~l~V---~nLp~~~~e~~l~~~F~~-~G~--i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~   74 (352)
T TIGR01661         3 KTNLIV---NYLPQTMTQEEIRSLFTS-IGE--IESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKT   74 (352)
T ss_pred             CcEEEE---eCCCCCCCHHHHHHHHHc-cCC--EEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc--EEECCee
Confidence            457777   9999  999999999998 999  455444 33  688899999999999998887764332  4678888


Q ss_pred             eEEEecccCC
Q 048589          272 VRVRRFVPKR  281 (283)
Q Consensus       272 iWaRky~pk~  281 (283)
                      +=++...|+.
T Consensus        75 i~v~~a~~~~   84 (352)
T TIGR01661        75 IKVSYARPSS   84 (352)
T ss_pred             EEEEeecccc
Confidence            8666555543

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.47  E-value=0.00098  Score=46.17  Aligned_cols=65  Identities=22%  Similarity=0.328  Sum_probs=50.9

Q ss_pred             CCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEE
Q 048589          206 KGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVR  275 (283)
Q Consensus       206 ~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaR  275 (283)
                      +|.|  ++++||+++|.+ ||+  |+.+.|..  .+....+|.|.|++.+....++...+..  .++|+++=++
T Consensus         5 ~~l~~~~~~~~i~~~~~~-~g~--i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~--~~~~~~~~v~   73 (74)
T cd00590           5 GNLPPDVTEEDLRELFSK-FGK--VESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK--ELGGRPLRVE   73 (74)
T ss_pred             eCCCCccCHHHHHHHHHh-cCC--EEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEe
Confidence            6777  799999999998 798  78888876  2345789999999999988888744432  2788887554

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.35  E-value=0.00073  Score=70.06  Aligned_cols=78  Identities=13%  Similarity=0.260  Sum_probs=63.4

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..+++||   +|.|  +++++|+++|.+ ||+  |+.+.+. +  +++..+||+|.|.+.+.....+...+  .+.|+|+
T Consensus       203 ~~~rLfV---gnLp~~vteedLk~lFs~-FG~--I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN--g~elgGr  274 (612)
T TIGR01645       203 KFNRIYV---ASVHPDLSETDIKSVFEA-FGE--IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN--LFDLGGQ  274 (612)
T ss_pred             ccceEEe---ecCCCCCCHHHHHHHHhh-cCC--eeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC--CCeeCCe
Confidence            3467766   8988  999999999996 999  5555554 3  57789999999999999888887544  4589999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-+.+.++++
T Consensus       275 ~LrV~kAi~pP  285 (612)
T TIGR01645       275 YLRVGKCVTPP  285 (612)
T ss_pred             EEEEEecCCCc
Confidence            99999988654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.34  E-value=0.0011  Score=61.83  Aligned_cols=78  Identities=13%  Similarity=0.178  Sum_probs=58.4

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .+++||   ++.|  .++++|+++|.. ||+  |+++.+- +  +++..+||+|.|.+++.....+..-+-  +.++||.
T Consensus       269 ~~~lfV---~NL~~~~~e~~L~~~F~~-fG~--v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG--~~~~gr~  340 (352)
T TIGR01661       269 GYCIFV---YNLSPDTDETVLWQLFGP-FGA--VQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG--YTLGNRV  340 (352)
T ss_pred             CcEEEE---eCCCCCCCHHHHHHHHHh-CCC--eEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC--CEECCeE
Confidence            446776   8888  999999999996 998  5556554 3  788999999999998875555432111  2589999


Q ss_pred             eEEEecccCCC
Q 048589          272 VRVRRFVPKRA  282 (283)
Q Consensus       272 iWaRky~pk~~  282 (283)
                      +-+.-..+|.+
T Consensus       341 i~V~~~~~~~~  351 (352)
T TIGR01661       341 LQVSFKTNKAY  351 (352)
T ss_pred             EEEEEccCCCC
Confidence            98887776653

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PLN03121 nucleic acid binding protein; Provisional

Probab=97.24  E-value=0.0023  Score=59.69  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=55.8

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH--hCCCCeeeEEEcCce
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI--LGENELMQFNIHGKD  271 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v--L~g~~~~kf~Ingk~  271 (283)
                      +-.|+||   .+.+  .||+||++||.. ||+  |++|.|...++...||.|.|+.++.++..  |+|.     .|.|+.
T Consensus         4 ~g~TV~V---~NLS~~tTE~dLrefFS~-~G~--I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa-----~l~d~~   72 (243)
T PLN03121          4 GGYTAEV---TNLSPKATEKDVYDFFSH-CGA--IEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGA-----TIVDQR   72 (243)
T ss_pred             CceEEEE---ecCCCCCCHHHHHHHHHh-cCC--eEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCC-----eeCCce
Confidence            3467776   6666  999999999997 999  99999998777788999999998886544  5574     467777


Q ss_pred             eEEEe
Q 048589          272 VRVRR  276 (283)
Q Consensus       272 iWaRk  276 (283)
                      |.+-.
T Consensus        73 I~It~   77 (243)
T PLN03121         73 VCITR   77 (243)
T ss_pred             EEEEe
Confidence            76655

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.24  E-value=0.0014  Score=63.61  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=56.4

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..+|+||   +|.|  +++++|+++|.. ||.  |+.|.+..   +++...||.|.|.+.+.....+..-+.  +.|+|+
T Consensus       185 ~~~~l~v---~nl~~~~te~~l~~~f~~-~G~--i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~i~g~  256 (457)
T TIGR01622       185 NFLKLYV---GNLHFNITEQELRQIFEP-FGD--IEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG--FELAGR  256 (457)
T ss_pred             CCCEEEE---cCCCCCCCHHHHHHHHHh-cCC--eEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC--cEECCE
Confidence            3789988   8888  999999999985 998  67776654   567889999999999987776543322  578998


Q ss_pred             eeEEE
Q 048589          271 DVRVR  275 (283)
Q Consensus       271 ~iWaR  275 (283)
                      .+=+.
T Consensus       257 ~i~v~  261 (457)
T TIGR01622       257 PIKVG  261 (457)
T ss_pred             EEEEE
Confidence            87443

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.21  E-value=0.0015  Score=63.26  Aligned_cols=77  Identities=19%  Similarity=0.159  Sum_probs=56.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ...+.++|||   ++.|  ++|+||+++|.. ||+ +++...|.+  +++...||+|.|.+++.....+..-+.  ..+.
T Consensus       103 ~~~~~~~LfV---gnLp~~~te~~L~~lF~~-~G~-V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG--~~l~  175 (346)
T TIGR01659       103 TNNSGTNLIV---NYLPQDMTDRELYALFRT-IGP-INTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG--ITVR  175 (346)
T ss_pred             CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC--CccC
Confidence            4457789988   8888  999999999996 999 444444444  678889999999999887766642211  2457


Q ss_pred             CceeEEEe
Q 048589          269 GKDVRVRR  276 (283)
Q Consensus       269 gk~iWaRk  276 (283)
                      ||.+.+..
T Consensus       176 gr~i~V~~  183 (346)
T TIGR01659       176 NKRLKVSY  183 (346)
T ss_pred             Cceeeeec
Confidence            77776654

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.12  E-value=0.0023  Score=62.17  Aligned_cols=75  Identities=23%  Similarity=0.307  Sum_probs=58.5

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ...+.||+||   ++.|  +++++|++||.. ||.  |+.|.|-.   ++...+||+|.|.+.+.....|.-.   ...+
T Consensus        85 ~~~~~~~l~V---~nlp~~~~~~~l~~~F~~-~G~--v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~---g~~~  155 (457)
T TIGR01622        85 AERDDRTVFV---LQLALKARERDLYEFFSK-VGK--VRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALT---GQML  155 (457)
T ss_pred             cccCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhC---CCEE
Confidence            4456889988   7888  999999999987 997  55565543   6788999999999999988887521   2357


Q ss_pred             cCceeEEEe
Q 048589          268 HGKDVRVRR  276 (283)
Q Consensus       268 ngk~iWaRk  276 (283)
                      .|+.+.++.
T Consensus       156 ~g~~i~v~~  164 (457)
T TIGR01622       156 LGRPIIVQS  164 (457)
T ss_pred             CCeeeEEee
Confidence            788887654

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=97.12  E-value=0.0029  Score=53.38  Aligned_cols=74  Identities=23%  Similarity=0.382  Sum_probs=60.9

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .+|+||   ++.|  ++++||+++|.. ||.  |.++.|..   .+...+||.|.|.+++....++....  ...++|+.
T Consensus       115 ~~~l~v---~nL~~~~~~~~l~~~F~~-~g~--~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~--~~~~~~~~  186 (306)
T COG0724         115 NNTLFV---GNLPYDVTEEDLRELFKK-FGP--VKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN--GKELEGRP  186 (306)
T ss_pred             CceEEE---eCCCCCCCHHHHHHHHHh-cCc--eeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC--CCeECCce
Confidence            688887   8888  999999999997 998  56666654   68999999999999998777776433  45899999


Q ss_pred             eEEEecc
Q 048589          272 VRVRRFV  278 (283)
Q Consensus       272 iWaRky~  278 (283)
                      +.++...
T Consensus       187 ~~v~~~~  193 (306)
T COG0724         187 LRVQKAQ  193 (306)
T ss_pred             eEeeccc
Confidence            9888843

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.06  E-value=0.0021  Score=64.07  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=58.8

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEE
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRV  274 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWa  274 (283)
                      .|++||   ++.|  ++|+||+++|.. ||.  |+++.|-.   ...||.|-|.+++..+.+++........|+|+.+++
T Consensus         2 s~vv~V---~nLp~~~te~~L~~~f~~-fG~--V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v   72 (481)
T TIGR01649         2 SPVVHV---RNLPQDVVEADLVEALIP-FGP--VSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF   72 (481)
T ss_pred             ccEEEE---cCCCCCCCHHHHHHHHHh-cCC--eeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence            477877   9999  999999999997 999  66665533   346999999999998888864333356899999998


Q ss_pred             EecccC
Q 048589          275 RRFVPK  280 (283)
Q Consensus       275 Rky~pk  280 (283)
                      +...++
T Consensus        73 ~~s~~~   78 (481)
T TIGR01649        73 NYSTSQ   78 (481)
T ss_pred             EecCCc
Confidence            766543

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=96.97  E-value=0.0031  Score=63.37  Aligned_cols=78  Identities=21%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      ...++||   +|.|  ++++|++++|.+ ||. +.+.-.|.+ .+...+||+|.|.+.+....++...+.  ..++||.+
T Consensus       284 ~~~~l~V---~nl~~~~~~~~L~~~F~~-~G~-i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g--~~~~gk~l  356 (562)
T TIGR01628       284 QGVNLYV---KNLDDTVTDEKLRELFSE-CGE-ITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG--RMLGGKPL  356 (562)
T ss_pred             CCCEEEE---eCCCCccCHHHHHHHHHh-cCC-eEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC--CeeCCcee
Confidence            3456776   7877  999999999996 998 555556655 688899999999999998887753322  47899999


Q ss_pred             EEEecccC
Q 048589          273 RVRRFVPK  280 (283)
Q Consensus       273 WaRky~pk  280 (283)
                      -+....+|
T Consensus       357 ~V~~a~~k  364 (562)
T TIGR01628       357 YVALAQRK  364 (562)
T ss_pred             EEEeccCc
Confidence            77665554

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=96.91  E-value=0.0038  Score=60.47  Aligned_cols=75  Identities=19%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .+.++||   .+.|  ++++||+++|.+ ||+ +++...+.+  .++...||.|.|.+.+..+..+..-+...+...++.
T Consensus       192 ~~~~lfV---~nLp~~vtee~L~~~F~~-fG~-V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~  266 (346)
T TIGR01659       192 KDTNLYV---TNLPRTITDDQLDTIFGK-YGQ-IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQP  266 (346)
T ss_pred             ccceeEE---eCCCCcccHHHHHHHHHh-cCC-EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence            3567877   7888  999999999975 998 544444434  677889999999999887777664443333333345


Q ss_pred             eEEE
Q 048589          272 VRVR  275 (283)
Q Consensus       272 iWaR  275 (283)
                      +=++
T Consensus       267 l~V~  270 (346)
T TIGR01659       267 LTVR  270 (346)
T ss_pred             EEEE
Confidence            5444

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=96.88  E-value=0.0072  Score=59.47  Aligned_cols=77  Identities=12%  Similarity=0.232  Sum_probs=57.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      +++..++|||   +|.|  +++++|+++|.. ||+  |+.+.+..   .+...+||+|.|.+.+..+.++.+-+-  +.|
T Consensus       291 ~~~~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~--i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g--~~~  362 (509)
T TIGR01642       291 VLDSKDRIYI---GNLPLYLGEDQIKELLES-FGD--LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG--KDT  362 (509)
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence            4556789988   7888  899999999997 998  66666543   678889999999998887766542221  146


Q ss_pred             cCceeEEEec
Q 048589          268 HGKDVRVRRF  277 (283)
Q Consensus       268 ngk~iWaRky  277 (283)
                      +|+.+=+++.
T Consensus       363 ~~~~l~v~~a  372 (509)
T TIGR01642       363 GDNKLHVQRA  372 (509)
T ss_pred             CCeEEEEEEC
Confidence            7877755554

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=96.85  E-value=0.0053  Score=63.45  Aligned_cols=78  Identities=17%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..|+...+|||   ++.|  ++|+|++++|.+ ||. +++...|-+ .++...||+|.|.+++..+..|...+..++ .+
T Consensus        53 ~~p~~~~~lFV---gnLp~~~tEd~L~~~F~~-~G~-I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i-~~  126 (578)
T TIGR01648        53 VQPGRGCEVFV---GKIPRDLYEDELVPLFEK-AGP-IYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI-RP  126 (578)
T ss_pred             CCCCCCCEEEe---CCCCCCCCHHHHHHHHHh-hCC-EEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCee-cC
Confidence            34556678888   8999  999999999997 998 666545555 788999999999999998887764322221 24


Q ss_pred             CceeEEE
Q 048589          269 GKDVRVR  275 (283)
Q Consensus       269 gk~iWaR  275 (283)
                      ||.+++.
T Consensus       127 Gr~l~V~  133 (578)
T TIGR01648       127 GRLLGVC  133 (578)
T ss_pred             Ccccccc
Confidence            5555443

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=96.75  E-value=0.0059  Score=61.39  Aligned_cols=80  Identities=20%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc--
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH--  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In--  268 (283)
                      ....+++||   +|.|  +|+++|+++|.+ ||. ......|.+ .+....||+|.|.+.+.....+..-+.  ..|+  
T Consensus       175 ~~~~~~l~V---~nl~~~~tee~L~~~F~~-fG~-i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g--~~i~~~  247 (562)
T TIGR01628       175 LKKFTNLYV---KNLDPSVNEDKLRELFAK-FGE-ITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG--KKIGLA  247 (562)
T ss_pred             ccCCCeEEE---eCCCCcCCHHHHHHHHHh-cCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC--cEeccc
Confidence            445678887   7887  999999999986 998 444444444 677788999999999998777653221  2466  


Q ss_pred             --CceeEEEecccC
Q 048589          269 --GKDVRVRRFVPK  280 (283)
Q Consensus       269 --gk~iWaRky~pk  280 (283)
                        |+.+++.++.+|
T Consensus       248 ~~g~~l~v~~a~~k  261 (562)
T TIGR01628       248 KEGKKLYVGRAQKR  261 (562)
T ss_pred             ccceeeEeecccCh
Confidence              999998877655

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=96.43  E-value=0.016  Score=60.45  Aligned_cols=72  Identities=15%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..+++||   +|.|  +++++|+++|.+ ||+  |++|.|- +  +++..+||+|.|.+.+..+..+...+.  ..|+||
T Consensus       106 ~~~rLfV---GnLp~~~tEe~Lr~lF~~-fG~--I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR  177 (612)
T TIGR01645       106 IMCRVYV---GSISFELREDTIRRAFDP-FGP--IKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGR  177 (612)
T ss_pred             CCCEEEE---cCCCCCCCHHHHHHHHHc-cCC--EEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecc
Confidence            3457777   8888  999999999997 999  6666654 3  788999999999999998888753221  256777


Q ss_pred             eeEEE
Q 048589          271 DVRVR  275 (283)
Q Consensus       271 ~iWaR  275 (283)
                      .+=++
T Consensus       178 ~IkV~  182 (612)
T TIGR01645       178 NIKVG  182 (612)
T ss_pred             eeeec
Confidence            76554

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=96.15  E-value=0.032  Score=54.94  Aligned_cols=74  Identities=16%  Similarity=0.325  Sum_probs=54.8

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhh---h-------CCceeeEEEeecCCCCCceEEEEecChHHHHHHhCC
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRR---Y-------GEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGE  259 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~---~-------G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g  259 (283)
                      ......|||||   +|.|  ++++||++||...   +       |. -|..+.+   +....||+|.|.+++.....|.=
T Consensus       170 ~~~~~~r~lyV---gnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~-~v~~~~~---~~~kg~afVeF~~~e~A~~Al~l  242 (509)
T TIGR01642       170 QATRQARRLYV---GGIPPEFVEEAVVDFFNDLMIATGYHKAEDGK-HVSSVNI---NKEKNFAFLEFRTVEEATFAMAL  242 (509)
T ss_pred             cCCccccEEEE---eCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEE---CCCCCEEEEEeCCHHHHhhhhcC
Confidence            45667899998   9999  9999999999973   1       22 3556665   45678999999999998887741


Q ss_pred             CCeeeEEEcCceeEEE
Q 048589          260 NELMQFNIHGKDVRVR  275 (283)
Q Consensus       260 ~~~~kf~Ingk~iWaR  275 (283)
                       +  .+.++|+.+=++
T Consensus       243 -~--g~~~~g~~l~v~  255 (509)
T TIGR01642       243 -D--SIIYSNVFLKIR  255 (509)
T ss_pred             -C--CeEeeCceeEec
Confidence             1  246778777554

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=95.99  E-value=0.026  Score=58.48  Aligned_cols=82  Identities=21%  Similarity=0.218  Sum_probs=58.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      +.+.++|||   +|.|  ++++||.+.|.+ ++. +++.+.+. .   .+....||+|.|++.+........-..-++.+
T Consensus       135 S~~~~rLFV---gNLP~~~TeeeL~eeFsk-v~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l  209 (578)
T TIGR01648       135 SVDNCRLFV---GGIPKNKKREEILEEFSK-VTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL  209 (578)
T ss_pred             cccCceeEe---ecCCcchhhHHHHHHhhc-ccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence            456789988   8998  899999999987 776 44444443 2   34568999999999988766554333334567


Q ss_pred             cCceeEEEecccC
Q 048589          268 HGKDVRVRRFVPK  280 (283)
Q Consensus       268 ngk~iWaRky~pk  280 (283)
                      .|+.+=+....|+
T Consensus       210 ~Gr~I~VdwA~p~  222 (578)
T TIGR01648       210 WGHVIAVDWAEPE  222 (578)
T ss_pred             cCceEEEEeeccc
Confidence            8888766555554

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>smart00361 RRM_1 RNA recognition motif

Probab=95.67  E-value=0.057  Score=39.91  Aligned_cols=57  Identities=14%  Similarity=0.197  Sum_probs=41.4

Q ss_pred             CHHHHHHHHH---hhhCCceeeEE---Eeec-C--CCCCceEEEEecChHHHHHHhC---CCCeeeEEEcCceeEE
Q 048589          211 TRAELFEFFT---RRYGEGCVEDI---KMGN-C--RDQSLYARVIVRSPAFITLILG---ENELMQFNIHGKDVRV  274 (283)
Q Consensus       211 se~Ei~~fFt---~~~G~~cve~v---~m~~-~--~~qplfariVf~s~~~vd~vL~---g~~~~kf~Ingk~iWa  274 (283)
                      .+++|+++|.   .+||.  |.+|   .|.+ +  +++.+||.|.|.+++.....+.   |.     .++|+.+=+
T Consensus         1 ~~~~l~~~~~~~~~~fG~--v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~-----~~~gr~l~~   69 (70)
T smart00361        1 KDEDFEREFSEEEEYFGE--VGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR-----YFDGRTVKA   69 (70)
T ss_pred             CchhHHHHHHHHHHhcCC--eeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC-----EECCEEEEe
Confidence            3688999998   34997  5544   5654 4  8899999999999998766554   42     577776643

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=95.35  E-value=0.028  Score=59.68  Aligned_cols=74  Identities=22%  Similarity=0.294  Sum_probs=60.0

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee--
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV--  272 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i--  272 (283)
                      .|||||   +|.|  ++|+|+...|++ ||+  |++|.|   .-...+|.|+..+-.....+|.--+  +..+++|-|  
T Consensus       421 SrTLwv---G~i~k~v~e~dL~~~fee-fGe--iqSi~l---i~~R~cAfI~M~~RqdA~kalqkl~--n~kv~~k~Iki  489 (894)
T KOG0132|consen  421 SRTLWV---GGIPKNVTEQDLANLFEE-FGE--IQSIIL---IPPRGCAFIKMVRRQDAEKALQKLS--NVKVADKTIKI  489 (894)
T ss_pred             eeeeee---ccccchhhHHHHHHHHHh-ccc--ceeEee---ccCCceeEEEEeehhHHHHHHHHHh--cccccceeeEE
Confidence            589988   9999  999999999998 999  999999   6678899998887777666666433  445677776  


Q ss_pred             -EEEecccCC
Q 048589          273 -RVRRFVPKR  281 (283)
Q Consensus       273 -WaRky~pk~  281 (283)
                       ||.-+=||.
T Consensus       490 ~Wa~g~G~ks  499 (894)
T KOG0132|consen  490 AWAVGKGPKS  499 (894)
T ss_pred             eeeccCCcch
Confidence             998777664

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=95.10  E-value=0.056  Score=54.06  Aligned_cols=77  Identities=21%  Similarity=0.317  Sum_probs=62.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      -++..++   |.+..|  .+.++++++|-. ||+  |+...|+-   .+..+.||+|.|.+.+.+..++.-+   ++.|+
T Consensus       285 ~~~~~~i---~V~nlP~da~~~~l~~~Fk~-FG~--Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig  355 (419)
T KOG0116|consen  285 RADGLGI---FVKNLPPDATPAELEEVFKQ-FGP--IKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIG  355 (419)
T ss_pred             eecccce---EeecCCCCCCHHHHHHHHhh-ccc--ccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccC
Confidence            3445554   559999  999999999997 999  77777775   4666799999999999988888865   89999


Q ss_pred             CceeEEEeccc
Q 048589          269 GKDVRVRRFVP  279 (283)
Q Consensus       269 gk~iWaRky~p  279 (283)
                      |+.+-+..-.|
T Consensus       356 ~~kl~Veek~~  366 (419)
T KOG0116|consen  356 GRKLNVEEKRP  366 (419)
T ss_pred             CeeEEEEeccc
Confidence            99987765443

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=94.41  E-value=0.21  Score=49.95  Aligned_cols=71  Identities=25%  Similarity=0.373  Sum_probs=52.4

Q ss_pred             CCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          196 TDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       196 d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      ...+|||   +|.|   ++++++++.|.. ||+  |.+|.+-.  ....||.|.|.+++....++..-+-  ..|.||.+
T Consensus       274 ~~~~l~v---~nL~~~~vt~~~L~~lF~~-yG~--V~~vki~~--~~~g~afV~f~~~~~A~~Ai~~lng--~~l~g~~l  343 (481)
T TIGR01649       274 PGSVLMV---SGLHQEKVNCDRLFNLFCV-YGN--VERVKFMK--NKKETALIEMADPYQAQLALTHLNG--VKLFGKPL  343 (481)
T ss_pred             CCCEEEE---eCCCCCCCCHHHHHHHHHh-cCC--eEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCC--CEECCceE
Confidence            4568877   7776   799999999996 998  55665433  1358999999999887777753221  15789988


Q ss_pred             EEEe
Q 048589          273 RVRR  276 (283)
Q Consensus       273 WaRk  276 (283)
                      -+..
T Consensus       344 ~v~~  347 (481)
T TIGR01649       344 RVCP  347 (481)
T ss_pred             EEEE
Confidence            7764

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PF13893 RRM_5: RNA recognition motif

Probab=94.28  E-value=0.15  Score=35.62  Aligned_cols=50  Identities=24%  Similarity=0.430  Sum_probs=36.5

Q ss_pred             HHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcCceeEE
Q 048589          215 LFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNIHGKDVRV  274 (283)
Q Consensus       215 i~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ingk~iWa  274 (283)
                      ++++|.+ ||+  |++|.|.+.+  +.+|.|.|.+.+.....+   +|..     ++|+.+-+
T Consensus         1 L~~~f~~-fG~--V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~-----~~g~~l~V   53 (56)
T PF13893_consen    1 LYKLFSK-FGE--VKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQ-----FNGRPLKV   53 (56)
T ss_dssp             HHHHHTT-TS---EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSE-----ETTEEEEE
T ss_pred             ChHHhCC-ccc--EEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCE-----ECCcEEEE
Confidence            4678886 998  7888886533  799999999999866655   4533     68887644

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=93.03  E-value=0.37  Score=47.38  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=51.9

Q ss_pred             ceEEEEccCCc--cCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC-CCCeeeEEEcCcee--
Q 048589          198 RTLFATFSKGH--PITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG-ENELMQFNIHGKDV--  272 (283)
Q Consensus       198 RT~FvTFS~G~--Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~-g~~~~kf~Ingk~i--  272 (283)
                      +||||   +|.  -++|.+|+++|.. ||+  |+.|.+.- .++  .|+|.|.+-.....+.. +.+  |+.|||+.+  
T Consensus       229 ~tLyI---g~l~d~v~e~dIrdhFyq-yGe--irsi~~~~-~~~--CAFv~ftTR~aAE~Aae~~~n--~lvI~G~Rl~i  297 (377)
T KOG0153|consen  229 KTLYI---GGLNDEVLEQDIRDHFYQ-YGE--IRSIRILP-RKG--CAFVTFTTREAAEKAAEKSFN--KLVINGFRLKI  297 (377)
T ss_pred             eEEEe---cccccchhHHHHHHHHhh-cCC--eeeEEeec-ccc--cceeeehhhHHHHHHHHhhcc--eeeecceEEEE
Confidence            46666   776  4999999999997 999  88888754 333  89999998877666655 434  999999776  


Q ss_pred             -EEEe
Q 048589          273 -RVRR  276 (283)
Q Consensus       273 -WaRk  276 (283)
                       |.+-
T Consensus       298 ~Wg~~  302 (377)
T KOG0153|consen  298 KWGRP  302 (377)
T ss_pred             EeCCC
Confidence             6554

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=92.24  E-value=0.16  Score=51.24  Aligned_cols=52  Identities=25%  Similarity=0.255  Sum_probs=44.1

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHH
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAF  252 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~  252 (283)
                      .++|.|||   +-.+  .+|.||++-|.+ ||.  ||+++|-+  -+..++||+|.|.+.++
T Consensus       122 ~~e~KLFv---g~lsK~~te~evr~iFs~-fG~--Ied~~ilrd~~~~sRGcaFV~fstke~  177 (510)
T KOG0144|consen  122 VEERKLFV---GMLSKQCTENEVREIFSR-FGH--IEDCYILRDPDGLSRGCAFVKFSTKEM  177 (510)
T ss_pred             ccchhhhh---hhccccccHHHHHHHHHh-hCc--cchhhheecccccccceeEEEEehHHH
Confidence            56788877   4444  899999999997 997  99999877  57789999999999877

>PLN03213 repressor of silencing 3; Provisional

Probab=91.14  E-value=0.74  Score=47.52  Aligned_cols=68  Identities=15%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             EEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecCh--HHHHH---HhCCCCeeeEEEcCceeE
Q 048589          202 ATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSP--AFITL---ILGENELMQFNIHGKDVR  273 (283)
Q Consensus       202 vTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~--~~vd~---vL~g~~~~kf~Ingk~iW  273 (283)
                      -.|.+|.+  ++++|++..|.+ ||.  |.+|.+-+ +|  .+||+|-|.++  +..+.   .|+|..     ..|+.+=
T Consensus        12 RIYVGNLSydVTEDDLravFSe-FGs--VkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAE-----WKGR~LK   81 (759)
T PLN03213         12 RLHVGGLGESVGRDDLLKIFSP-MGT--VDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCV-----WKGGRLR   81 (759)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHh-cCC--eeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCe-----ecCceeE
Confidence            34558777  999999999997 998  77877766 55  89999999987  44444   455643     6777776


Q ss_pred             EEeccc
Q 048589          274 VRRFVP  279 (283)
Q Consensus       274 aRky~p  279 (283)
                      +.+..|
T Consensus        82 VNKAKP   87 (759)
T PLN03213         82 LEKAKE   87 (759)
T ss_pred             EeeccH
Confidence            666544

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=90.90  E-value=1.1  Score=46.69  Aligned_cols=78  Identities=22%  Similarity=0.289  Sum_probs=59.8

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec--CCCCCceEEEEecChHHHHHHhCCC----CeeeEEEc
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN--CRDQSLYARVIVRSPAFITLILGEN----ELMQFNIH  268 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~--~~~qplfariVf~s~~~vd~vL~g~----~~~kf~In  268 (283)
                      +|+||   |..|  .+|+||.+.|+. ||+  |+-+.+ -+  ++.+-+-|+|-|+.+.+-..-|.+.    ..--+.+.
T Consensus       293 ~tVFv---RNL~fD~tEEel~~~fsk-FG~--v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~  366 (678)
T KOG0127|consen  293 KTVFV---RNLPFDTTEEELKEHFSK-FGE--VKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD  366 (678)
T ss_pred             ceEEE---ecCCccccHHHHHHHHHh-hcc--ceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence            89988   9888  899999999997 998  444333 23  8999999999999998854444432    22238899


Q ss_pred             CceeEEEecccCC
Q 048589          269 GKDVRVRRFVPKR  281 (283)
Q Consensus       269 gk~iWaRky~pk~  281 (283)
                      |+.+=+-..++|+
T Consensus       367 GR~Lkv~~Av~Rk  379 (678)
T KOG0127|consen  367 GRLLKVTLAVTRK  379 (678)
T ss_pred             ccEEeeeeccchH
Confidence            9999887777664

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=90.28  E-value=0.6  Score=47.34  Aligned_cols=67  Identities=24%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCcee-eEEEeec-CCCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCce
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCV-EDIKMGN-CRDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKD  271 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cv-e~v~m~~-~~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~  271 (283)
                      -+||   ++.|  +.|+|+.-+|++ -|. .- -+++|.. ++...+||+|+|.+.....   ..||+.+    .=.||+
T Consensus        85 EVfv---GkIPrD~~EdeLvplfEk-iG~-I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E----ir~GK~  155 (506)
T KOG0117|consen   85 EVFV---GKIPRDVFEDELVPLFEK-IGK-IYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE----IRPGKL  155 (506)
T ss_pred             eEEe---cCCCccccchhhHHHHHh-ccc-eeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc----ccCCCE
Confidence            4555   9999  999999999997 887 44 4677764 9999999999999987643   3455543    117777


Q ss_pred             eEE
Q 048589          272 VRV  274 (283)
Q Consensus       272 iWa  274 (283)
                      +=+
T Consensus       156 igv  158 (506)
T KOG0117|consen  156 LGV  158 (506)
T ss_pred             eEE
Confidence            743

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=90.24  E-value=0.54  Score=42.79  Aligned_cols=73  Identities=21%  Similarity=0.362  Sum_probs=57.9

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHH---HHhCCCCeeeEE
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFIT---LILGENELMQFN  266 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd---~vL~g~~~~kf~  266 (283)
                      ..+-|+|+   .|.+  +||+-+.|.|.+ -|+  |.+++|.+   .+.+.+||++-|++++..|   .|||+     +.
T Consensus         7 nqd~tiyv---gnld~kvs~~~l~EL~iq-agp--Vv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~-----Vk   75 (203)
T KOG0131|consen    7 NQDATLYV---GNLDEKVSEELLYELFIQ-AGP--VVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM-----VK   75 (203)
T ss_pred             CCCceEEE---ecCCHHHHHHHHHHHHHh-cCc--eeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH-----HH
Confidence            44568888   7887  999999999997 888  88999987   6779999999999999866   45663     23


Q ss_pred             EcCceeEEEecc
Q 048589          267 IHGKDVRVRRFV  278 (283)
Q Consensus       267 Ingk~iWaRky~  278 (283)
                      ..||.+-++|--
T Consensus        76 LYgrpIrv~kas   87 (203)
T KOG0131|consen   76 LYGRPIRVNKAS   87 (203)
T ss_pred             hcCceeEEEecc
Confidence            567777666643

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=89.34  E-value=1.4  Score=44.92  Aligned_cols=81  Identities=25%  Similarity=0.419  Sum_probs=65.4

Q ss_pred             CCCCCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEE--eecCCCCCceEEEEecChHHHHHHhCCCCee
Q 048589          188 SEEANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIK--MGNCRDQSLYARVIVRSPAFITLILGENELM  263 (283)
Q Consensus       188 ~~~~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~--m~~~~~qplfariVf~s~~~vd~vL~g~~~~  263 (283)
                      ++...++..+|++|||   ..|  +.=+++++.|.++-|+  |+-|.  |.+.+.....|.|-|+.++-+...|.  ..-
T Consensus        35 s~~gn~~~r~R~vfIt---NIpyd~rWqdLKdLvrekvGe--v~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E--~ln  107 (608)
T KOG4212|consen   35 SQGGNVAARDRSVFIT---NIPYDYRWQDLKDLVREKVGE--VEYVELLFDESGKARGCAVVEFKDPENVQKALE--KLN  107 (608)
T ss_pred             CCCCCcccccceEEEe---cCcchhhhHhHHHHHHHhcCc--eEeeeeecccCCCcCCceEEEeeCHHHHHHHHH--Hhh
Confidence            3456788999999996   445  7778999999999998  55544  33389999999999999999988875  345


Q ss_pred             eEEEcCceeEEE
Q 048589          264 QFNIHGKDVRVR  275 (283)
Q Consensus       264 kf~Ingk~iWaR  275 (283)
                      |+.+||+.+=++
T Consensus       108 k~~~~GR~l~vK  119 (608)
T KOG4212|consen  108 KYEVNGRELVVK  119 (608)
T ss_pred             hccccCceEEEe
Confidence            789999988665

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=89.26  E-value=0.59  Score=47.30  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             EEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCC
Q 048589          202 ATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGEN  260 (283)
Q Consensus       202 vTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~  260 (283)
                      +-|..-.|  .||.|++++|++ ||. +-|-..+.|  ++++..|++|.|.+.+.-|+..+--
T Consensus        36 KlfVgqIprt~sE~dlr~lFe~-yg~-V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Al   96 (510)
T KOG0144|consen   36 KLFVGQIPRTASEKDLRELFEK-YGN-VYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINAL   96 (510)
T ss_pred             hheeccCCccccHHHHHHHHHH-hCc-eeEEEeecccccCcccceEEEEeccHHHHHHHHHHh
Confidence            44557777  899999999997 998 666666666  8999999999999999888877743

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=88.76  E-value=1.3  Score=37.29  Aligned_cols=56  Identities=25%  Similarity=0.513  Sum_probs=46.5

Q ss_pred             CCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHH
Q 048589          191 ANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAF  252 (283)
Q Consensus       191 ~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~  252 (283)
                      ..+|+-.|-+||   +..|  ||.||+.+.|-+ ||.  |..|.+....+-.+=|+||.....-
T Consensus        12 rlppevnriLyi---rNLp~~ITseemydlFGk-yg~--IrQIRiG~~k~TrGTAFVVYedi~d   69 (124)
T KOG0114|consen   12 RLPPEVNRILYI---RNLPFKITSEEMYDLFGK-YGT--IRQIRIGNTKETRGTAFVVYEDIFD   69 (124)
T ss_pred             CCChhhheeEEE---ecCCccccHHHHHHHhhc-ccc--eEEEEecCccCcCceEEEEehHhhh
Confidence            356788898988   9999  999999999997 998  7788887667778889999876554

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=88.46  E-value=1  Score=41.97  Aligned_cols=60  Identities=18%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             ccCCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          208 HPITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       208 ~Pvse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      |--|.++++--|++ ||+  |-+|++..   +.+..+||+|-|+-...+...|.-.+-  -.++|+.+
T Consensus        23 yRTspd~LrrvFek-YG~--vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG--~~ldgRel   85 (256)
T KOG4207|consen   23 YRTSPDDLRRVFEK-YGR--VGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG--AVLDGREL   85 (256)
T ss_pred             ccCCHHHHHHHHHH-hCc--ccceecccccccccccceeEEEeeecchHHHHHHhhcc--eeecccee
Confidence            44578999999996 999  88999986   899999999999876665555442211  15778877

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=86.95  E-value=1.6  Score=44.14  Aligned_cols=65  Identities=12%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             EEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCcee
Q 048589          201 FATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKDV  272 (283)
Q Consensus       201 FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~i  272 (283)
                      +..|+++.|  ++|++|.+.|.+ .|. .+.-=.+.|  +|+.++||++-|.+.++..   +.|+|.+     ++|+.+
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~-~g~-v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~-----~~gr~l   90 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSG-VGP-VLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE-----FNGRKL   90 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhc-cCc-cceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc-----cCCceE
Confidence            455569999  999999999996 887 443333444  8999999999999977744   4566644     566655

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=85.64  E-value=2.6  Score=43.41  Aligned_cols=61  Identities=21%  Similarity=0.220  Sum_probs=47.2

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-cCCCCCceEEEEecChHHHHHH
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-NCRDQSLYARVIVRSPAFITLI  256 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~~~~qplfariVf~s~~~vd~v  256 (283)
                      .-+--||+||   +|.|  ++.+|+-..|.+.||-=|-..|.+. |-+=+-+=|||+|.....--+.
T Consensus       366 ~lDprrTVFV---Ggvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~A  429 (520)
T KOG0129|consen  366 PIDPRRTVFV---GGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKA  429 (520)
T ss_pred             ccCccceEEe---cCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHH
Confidence            4455689988   9998  9999999999999995366777775 3445556699999998873333

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=85.17  E-value=2.2  Score=39.24  Aligned_cols=61  Identities=20%  Similarity=0.370  Sum_probs=49.4

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENE  261 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~  261 (283)
                      ..++++++   ...|  |-|-||.+.|-+ ||.  |..|....+..+|-||+|-|..+--.+...-|.+
T Consensus         4 r~~~~iyv---GNLP~diRekeieDlFyK-yg~--i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRd   66 (241)
T KOG0105|consen    4 RNSRRIYV---GNLPGDIREKEIEDLFYK-YGR--IREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRD   66 (241)
T ss_pred             cccceEEe---cCCCcchhhccHHHHHhh-hcc--eEEEEeccCCCCCCeeEEEecCccchhhhhhccc
Confidence            45677776   7888  899999999996 998  7777776688889999999998887776666543

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=84.26  E-value=3.3  Score=39.03  Aligned_cols=62  Identities=31%  Similarity=0.445  Sum_probs=44.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhC-CceeeEEEeecCCCC--CceEEEEecChHHHH---HHhCC
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYG-EGCVEDIKMGNCRDQ--SLYARVIVRSPAFIT---LILGE  259 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G-~~cve~v~m~~~~~q--plfariVf~s~~~vd---~vL~g  259 (283)
                      .+..-||+||   -|.|  |.--||...|.+.-| ++|.  +.|-..+.|  .-+|+++|.|.+...   ..|||
T Consensus        30 ~~~~VRTLFV---SGLP~DvKpREiynLFR~f~GYEgsl--LK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG   99 (284)
T KOG1457|consen   30 EPGAVRTLFV---SGLPNDVKPREIYNLFRRFHGYEGSL--LKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG   99 (284)
T ss_pred             cccccceeee---ccCCcccCHHHHHHHhccCCCcccee--eeeccCCCccccceEEEEecchHHHHHHHHHhcC
Confidence            3445899998   8999  899999999999888 4343  334222222  368999999988744   45566

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=81.75  E-value=6  Score=36.80  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             ceEEEEccCCcc--CCHHHHHH----HHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHH---HhCC
Q 048589          198 RTLFATFSKGHP--ITRAELFE----FFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITL---ILGE  259 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~----fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~---vL~g  259 (283)
                      +|+||   +.++  |..+|++.    .|.+ ||.  |-+|.+-++...++=|.|||+++++-..   -|+|
T Consensus        10 ~TlYI---nnLnekI~~~elkrsL~~LFsq-fG~--ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~g   74 (221)
T KOG4206|consen   10 GTLYI---NNLNEKIKKDELKRSLYLLFSQ-FGK--ILDISAFKTPKMRGQAFVVFKETEAASAALRALQG   74 (221)
T ss_pred             ceEee---hhccccccHHHHHHHHHHHHHh-hCC--eEEEEecCCCCccCceEEEecChhHHHHHHHHhcC
Confidence            38988   7665  99999988    9997 998  7788887888888889999999777444   4555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.74
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	98.61
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.6
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	98.57
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.56
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.55
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.55
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.54
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.54
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.54
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.52
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.52
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.52
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.52
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.5
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.49
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.48
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.48
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.48
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.47
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.46
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.45
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	98.44
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.44
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.43
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	98.43
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	98.43
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.42
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.42
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.42
2dis_A	109	Unnamed protein product; structural genomics, RRM	98.41
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.4
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.4
1x5p_A	97	Negative elongation factor E; structure genomics,	98.4
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.39
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.39
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	98.37
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.36
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.36
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.35
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.35
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.35
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.35
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	98.35
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.33
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	98.33
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.32
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.32
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.32
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.31
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.31
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.31
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.3
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.3
2div_A	99	TRNA selenocysteine associated protein; structural	98.3
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	98.3
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.29
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.28
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.27
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.27
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.27
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.27
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.26
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.26
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.25
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.25
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.25
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.25
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.24
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	98.24
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.24
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.24
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.23
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.23
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.22
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.22
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.22
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.22
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	98.21
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.21
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.21
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.2
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.18
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.18
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	98.18
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.18
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	98.18
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.17
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.17
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	98.17
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.16
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	98.15
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.15
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.15
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.15
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.15
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.15
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.14
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.13
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.13
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.13
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.13
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.13
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.12
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.11
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	98.11
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.1
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.1
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	98.1
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.1
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	98.09
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.08
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	98.07
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.07
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.06
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.06
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.06
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	98.05
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.05
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.03
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.02
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.02
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.01
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	98.01
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.01
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.01
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	98.01
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.01
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.0
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	98.0
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	97.99
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	97.99
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	97.97
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.96
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	97.96
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	97.96
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	97.95
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	97.95
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	97.92
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	97.91
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	97.91
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	97.9
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	97.88
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	97.88
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	97.86
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	97.84
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	97.03
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	97.82
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	97.81
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.81
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.8
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	97.8
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.79
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.79
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	97.75
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	97.75
1x5o_A	114	RNA binding motif, single-stranded interacting pro	97.75
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.75
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	97.74
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	97.74
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.71
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	97.69
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.69
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	97.68
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.68
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.67
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	97.64
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	97.61
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	97.59
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.57
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	97.56
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	97.56
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	97.51
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.5
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	97.5
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.49
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	97.44
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.41
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	97.39
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	97.38
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.37
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.34
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.31
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.22
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	97.2
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	97.12
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	97.11
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	97.07
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.01
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	97.0
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	96.87
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	96.82
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	96.78
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	96.66
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	96.58
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	96.58
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	96.21
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	96.11
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	96.09
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	95.69
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	95.6
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	94.84
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	94.71
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	93.64
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	91.43
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	90.97
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	88.83
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	80.12

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.74  E-value=5.3e-08  Score=76.18  Aligned_cols=84  Identities=19%  Similarity=0.335  Sum_probs=65.7

Q ss_pred             CCCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeee
Q 048589          190 EANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQ  264 (283)
Q Consensus       190 ~~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~k  264 (283)
                      ....+++.+|+||   +|.|  ++++||+++|.+ ||.  |+.|.|-.   +++..+||+|.|.+.+....++....   
T Consensus        18 ~~~~~~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~--i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~---   88 (109)
T 2rs2_A           18 GSHMGSSGCKMFI---GGLSWQTTQEGLREYFGQ-FGE--VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---   88 (109)
T ss_dssp             --------CCEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC---
T ss_pred             ccccCCCCCEEEE---eCCCCCCCHHHHHHHHHc-cCC--eEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC---
Confidence            3445678899998   6877  999999999996 998  67777654   58889999999999999999998653   


Q ss_pred             EEEcCceeEEEecccCCC
Q 048589          265 FNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       265 f~Ingk~iWaRky~pk~~  282 (283)
                      ..++|+.+-++...|++.
T Consensus        89 ~~l~g~~l~V~~a~~~~~  106 (109)
T 2rs2_A           89 HELDSKTIDPKVAFPRRA  106 (109)
T ss_dssp             EEETTEEEEEEECCCCCC
T ss_pred             CcCCCEEEEEEEccCCCC
Confidence            789999999999888764

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=98.61  E-value=2.6e-07  Score=70.02  Aligned_cols=77  Identities=25%  Similarity=0.361  Sum_probs=60.0

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      +....|+||   +|.|  +||++++++|.+ ||+  |++|.|-  .+..+||+|.|.+++..+. |+|.   .+.++|+.
T Consensus         8 ~~~~~~l~V---~~Lp~~~te~~L~~~F~~-~G~--i~~v~i~--~~srGfaFV~F~~~~~A~~-~~~~---~~~~~g~~   75 (89)
T 3d2w_A            8 HHHGSKVFV---GRCTEDMTAEELQQFFCQ-YGE--VVDVFIP--KPFRAFAFVTFADDKVAQS-LCGE---DLIIKGIS   75 (89)
T ss_dssp             ---CCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEECC--SSCCSEEEEEESCHHHHHH-HTTC---EEEETTEE
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC--EEEEEEe--eCCCCEEEEEECCHHHHHH-HcCC---CcccCCEE
Confidence            445568888   8888  999999999996 998  7777773  3578999999999999885 5664   77899999


Q ss_pred             eEEEecccCCC
Q 048589          272 VRVRRFVPKRA  282 (283)
Q Consensus       272 iWaRky~pk~~  282 (283)
                      +.+++..||+.
T Consensus        76 v~v~~a~~k~~   86 (89)
T 3d2w_A           76 VHISNAEPKHN   86 (89)
T ss_dssp             EEEEECC----
T ss_pred             EEEEEcCCCCc
Confidence            99999998864

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.60  E-value=2.3e-07  Score=71.35  Aligned_cols=84  Identities=14%  Similarity=0.228  Sum_probs=67.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCee----
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELM----  263 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~----  263 (283)
                      .+++.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||+|.|.+.+....++...+..    
T Consensus        11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~   84 (111)
T 1x4h_A           11 DVTEGKTVFI---RNLSFDSEEEALGEVLQQ-FGD--LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG   84 (111)
T ss_dssp             CCCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred             cCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence            3556789998   7888  999999999986 998  67777754   5778999999999999988888643311    


Q ss_pred             eEEEcCceeEEEecccCCC
Q 048589          264 QFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       264 kf~Ingk~iWaRky~pk~~  282 (283)
                      ...|+|+.+-++...|++.
T Consensus        85 ~~~~~g~~l~v~~a~~~~~  103 (111)
T 1x4h_A           85 GLKLDGRQLKVDLAVTRDE  103 (111)
T ss_dssp             CEESSSCEEEEECCCCCCC
T ss_pred             CcEEcCEEEEEEECCCCcc
Confidence            3578999999998888764

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.57  E-value=2.7e-07  Score=68.66  Aligned_cols=77  Identities=23%  Similarity=0.375  Sum_probs=63.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      +...||+||   +|.|  ++++||+++|.+ ||+  |+.|.|-  .....||.|.|.+.+..+.+ +|.   .+.++|+.
T Consensus         2 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~--~~~~g~afV~f~~~~~a~~~-~~~---~~~~~g~~   69 (88)
T 1wf0_A            2 SSGSSGVFV---GRCTGDMTEDELREFFSQ-YGD--VMDVFIP--KPFRAFAFVTFADDQIAQSL-CGE---DLIIKGIS   69 (88)
T ss_dssp             CSCCCEEEE---ESCCSSSCHHHHHHHSTT-TSC--CCEEECC--SSCCSCCEEECSCHHHHHHT-TTC---EEEETTEE
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCC--eeEEEEe--cCCCCEEEEEECCHHHHHHH-hcC---CceeCCEE
Confidence            346799999   7888  999999999986 998  7777773  34778999999999998764 554   68999999


Q ss_pred             eEEEecccCCC
Q 048589          272 VRVRRFVPKRA  282 (283)
Q Consensus       272 iWaRky~pk~~  282 (283)
                      +-+....||+.
T Consensus        70 l~v~~a~~~~~   80 (88)
T 1wf0_A           70 VHISNAEPKHN   80 (88)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEEecCCCCC
Confidence            99999888764

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.56  E-value=3.8e-07  Score=68.93  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=65.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +.+.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.|..   .++...||.|.|.+.+....++..-+.  ..|+
T Consensus         5 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   76 (99)
T 1whw_A            5 SSGSGRLFV---RNLSYTSSEEDLEKLFSA-YGP--LSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQ   76 (99)
T ss_dssp             CCSCEEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESS
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence            567899999   6888  999999999996 998  77777754   677889999999999998887742221  3689


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|++.
T Consensus        77 g~~l~V~~a~~~~~   90 (99)
T 1whw_A           77 GRMLHVLPSTIKKE   90 (99)
T ss_dssp             SCEEEEEECCCCST
T ss_pred             CcEEEEEEcCCCcc
Confidence            99999988887764

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.55  E-value=4e-07  Score=69.47  Aligned_cols=80  Identities=18%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|-.   +++...||+|.|.+.+....++...    ..|
T Consensus        11 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~----~~~   80 (103)
T 2cqg_A           11 AVQKTSDLIV---LGLPWKTTEQDLKEYFST-FGE--VLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR----HMI   80 (103)
T ss_dssp             CCCCCCCEEE---ESCCSSCCHHHHHHHHGG-GSC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSC----EEE
T ss_pred             ccCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcC----Cee
Confidence            4566789988   6787  999999999986 998  66666643   5778899999999999999999842    389


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...||..
T Consensus        81 ~g~~l~v~~a~~~~~   95 (103)
T 2cqg_A           81 DGRWCDCKLPNSKQS   95 (103)
T ss_dssp             TTEEEEEECCCTTCC
T ss_pred             CCeEEEEEecCCCCc
Confidence            999999998888764

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.55  E-value=5.1e-07  Score=70.14  Aligned_cols=83  Identities=14%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+.+.+|+||   +|.|  ++++||+++|.+ ||.  |+.|.+..   .++...||+|.|.+.+....++...+.  ..
T Consensus        10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~   81 (115)
T 2dgo_A           10 KDTSNHFHVFV---GDLSPEITTEDIKAAFAP-FGR--ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QW   81 (115)
T ss_dssp             CCSTTCEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--CE
T ss_pred             CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CE
Confidence            34567899998   7888  999999999995 998  66776654   577788999999999998887753221  25


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      |+|+.+-++...|+++
T Consensus        82 ~~g~~l~V~~a~~~~~   97 (115)
T 2dgo_A           82 LGGRQIRTNWATRKPP   97 (115)
T ss_dssp             ETTEECEEEESSCCCC
T ss_pred             ECCEEEEEEEccCCCC
Confidence            8999998888877654

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.54  E-value=3e-07  Score=67.89  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      +.||+||   +|.|  ++++||+++|.+ ||.  |+.+.+..   ++++..||.|.|.+.+....++. .+..  .++|+
T Consensus         5 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~g~--~~~g~   75 (89)
T 3ucg_A            5 DARSIYV---GNVDYGATAEELEAHFHG-CGS--VNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDES--LFRGR   75 (89)
T ss_dssp             HHTEEEE---ESCCTTCCHHHHHHHHGG-GCC--EEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG-GTTC--EETTE
T ss_pred             cCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh-cCCC--EECCc
Confidence            4689988   6888  899999999996 998  66766643   67889999999999999888873 2222  48999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|+.+
T Consensus        76 ~l~V~~a~~~~p   87 (89)
T 3ucg_A           76 QIKVIPKRTNRP   87 (89)
T ss_dssp             ECEEEETTTTSC
T ss_pred             EEEEEEccCCCC
Confidence            999998877765

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.54  E-value=5.7e-07  Score=68.66  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=66.6

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+...+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   .++...||.|.|.+.+....++..-+.  ..
T Consensus        10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~   81 (105)
T 1x5u_A           10 SERNQDATVYV---GGLDEKVSEPLLWELFLQ-AGP--VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IK   81 (105)
T ss_dssp             CCCCTTTEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CB
T ss_pred             ccCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC--Ce
Confidence            34567799999   6888  999999999997 998  67777654   577888999999999998887763221  24


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      |+|+.+-++...|++.
T Consensus        82 ~~g~~l~v~~a~~~~~   97 (105)
T 1x5u_A           82 LYGKPIRVNKASAHNK   97 (105)
T ss_dssp             CSSCBCEEEETTTTSC
T ss_pred             ECCeEEEEEECCCCCc
Confidence            8999999998888764

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=4.7e-07  Score=68.58  Aligned_cols=81  Identities=21%  Similarity=0.379  Sum_probs=65.0

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||.  |+.|.+-.   +++...||.|.|.+++....++. .+  ...|
T Consensus         6 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~--~~~~   76 (99)
T 2dgs_A            6 SGSKSNKIFV---GGIPHNCGETELREYFKK-FGV--VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH--FHDI   76 (99)
T ss_dssp             CCSSCCEEEE---ESCCSSCCHHHHHHHHSS-SSC--EEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC--CCBS
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC--CCEE
Confidence            3567799998   7888  999999999997 998  66666643   57788999999999999887775 22  1268


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|++.
T Consensus        77 ~g~~l~V~~a~~~~~   91 (99)
T 2dgs_A           77 MGKKVEVKRAEPRDS   91 (99)
T ss_dssp             SSCBCEEEECCCCCC
T ss_pred             CCeEEEEEECCCCcc
Confidence            999999998887764

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=1.1e-06  Score=68.39  Aligned_cols=79  Identities=20%  Similarity=0.250  Sum_probs=65.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ...+.+|+||   +|.|  ++++||+++|.+ ||.  |+.|.+-.   +++...||.|.|.+++....++...+.   .|
T Consensus        13 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~   83 (116)
T 2cqd_A           13 KDTTFTKIFV---GGLPYHTTDASLRKYFEG-FGD--IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---II   83 (116)
T ss_dssp             CSCSSSEEEE---ECCCSSCCHHHHHHHHHT-TSC--EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cC
Confidence            4567799998   6887  999999999986 998  67776654   577889999999999999999987664   69


Q ss_pred             cCceeEEEecccC
Q 048589          268 HGKDVRVRRFVPK  280 (283)
Q Consensus       268 ngk~iWaRky~pk  280 (283)
                      +|+.+-++...++
T Consensus        84 ~g~~l~V~~a~~~   96 (116)
T 2cqd_A           84 DGRKANVNLAYLG   96 (116)
T ss_dssp             TTEECEEEESTTT
T ss_pred             CCEEEEEEEcccC
Confidence            9999988887554

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=1.3e-07  Score=72.45  Aligned_cols=81  Identities=22%  Similarity=0.418  Sum_probs=66.0

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||.|.|.+++....+|.. +  ...|
T Consensus        12 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~--~~~~   82 (105)
T 2dh8_A           12 GADEIGKLFV---GGLDWSTTQETLRSYFSQ-YGE--VVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R--PHTL   82 (105)
T ss_dssp             CSSSSSEECC---BSCCTTCCHHHHHHHHHT-TSC--EEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C--SEEE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C--CCeE
Confidence            4667789987   7888  999999999997 998  55555543   577789999999999999988875 2  3579


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...||..
T Consensus        83 ~g~~l~V~~a~~~~~   97 (105)
T 2dh8_A           83 DGRNIDPKPCTPRGM   97 (105)
T ss_dssp             TTEEEBCCCSCCSSC
T ss_pred             CCEEEEEEEccCCCC
Confidence            999998888877753

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=7.8e-07  Score=67.80  Aligned_cols=83  Identities=14%  Similarity=0.211  Sum_probs=65.1

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|.. .+....||.|.|.+.+....++..-+.  ..|+
T Consensus        10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   81 (103)
T 2cq3_A           10 ESKSTPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK--ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVE   81 (103)
T ss_dssp             CCSCCCCEEEE---ESCCTTCCHHHHHHHGGG-TSC--EEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT--CEET
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence            44667799999   6888  999999999996 998  67777655 455788999999999998877652111  1489


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|+..
T Consensus        82 g~~l~v~~a~~~~~   95 (103)
T 2cq3_A           82 GRKIEVNNATARVM   95 (103)
T ss_dssp             TEECEEEECCSSCC
T ss_pred             CEEEEEEEcccCCC
Confidence            99999988887754

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.52  E-value=2.3e-07  Score=68.22  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+.+++||   +|.|  ++++||+++|.+ ||+  |++|.+..   .++...||.|.|.+.+.....+..-+.  ..++
T Consensus         3 ~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~   74 (87)
T 3bs9_A            3 LGSHFHVFV---GDLSPEITTAAIAAAFAP-FGR--ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLG   74 (87)
T ss_dssp             ---CEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred             CCCceEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence            456789988   7887  999999999996 998  66666643   677789999999999998887653111  2589


Q ss_pred             CceeEEEecccCC
Q 048589          269 GKDVRVRRFVPKR  281 (283)
Q Consensus       269 gk~iWaRky~pk~  281 (283)
                      |+.+-++...||+
T Consensus        75 g~~l~v~~a~~kp   87 (87)
T 3bs9_A           75 GRQIRTNWATRKP   87 (87)
T ss_dssp             TEECEEEEEC---
T ss_pred             CeEEEEEecCCCC
Confidence            9999888777763

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.50  E-value=3.7e-07  Score=69.28  Aligned_cols=79  Identities=18%  Similarity=0.182  Sum_probs=63.1

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      +++||   +|.|  +||+||+++|.+ ||. -|++|.+- +  ++++.+||+|.|.+++.....|.... -.+.|+|+.+
T Consensus         2 ~~i~v---~nLp~~~te~~l~~~F~~-~G~-~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i   75 (91)
T 2lxi_A            2 NIVML---RMLPQAATEDDIRGQLQS-HGV-QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKV   75 (91)
T ss_dssp             CEEEE---ETCCSSCCHHHHHHHHHH-HTC-CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEE
T ss_pred             CEEEE---eCCCCCCCHHHHHHHHHH-hCC-EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC-CCeEECCEEE
Confidence            56777   9999  999999999996 994 37776553 3  68899999999999999888875321 1357999999


Q ss_pred             EEEecccCCC
Q 048589          273 RVRRFVPKRA  282 (283)
Q Consensus       273 WaRky~pk~~  282 (283)
                      -++...||+.
T Consensus        76 ~V~~a~~~~~   85 (91)
T 2lxi_A           76 SMHYSDPKPK   85 (91)
T ss_dssp             EEECCCSCCC
T ss_pred             EEEEcCCCCC
Confidence            9988888764

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.49  E-value=6.4e-07  Score=66.14  Aligned_cols=75  Identities=17%  Similarity=0.444  Sum_probs=61.2

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+++.+++||   +|.|  +++++|+++|.+ ||.  |+.+.+-.   +++...||.|.|.+++....++....   -.+
T Consensus         7 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~---~~~   77 (87)
T 3s7r_A            7 NEEDAGKMFV---GGLSWDTSKKDLKDYFTK-FGE--VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE---HRL   77 (87)
T ss_dssp             CCSCTTEEEE---ECCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC---EEE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC---CEE
Confidence            4567899998   7888  999999999975 998  66666643   57788999999999999999987543   259


Q ss_pred             cCceeEEEe
Q 048589          268 HGKDVRVRR  276 (283)
Q Consensus       268 ngk~iWaRk  276 (283)
                      +|+.+-+++
T Consensus        78 ~g~~i~v~~   86 (87)
T 3s7r_A           78 DGRVIDPKK   86 (87)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999997764

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.48  E-value=8.7e-07  Score=67.26  Aligned_cols=80  Identities=15%  Similarity=0.280  Sum_probs=63.9

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCee
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELM  263 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~  263 (283)
                      ..+++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||.|.|.+++....++   +|.   
T Consensus         7 ~~~~~~~~l~v---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---   77 (102)
T 1x5s_A            7 GMASDEGKLFV---GGLSFDTNEQSLEQVFSK-YGQ--ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK---   77 (102)
T ss_dssp             CCCCCCSEEEE---ESCCTTCCHHHHHHHHHH-HSC--CCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC---
T ss_pred             CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC---
Confidence            45678899999   6887  999999999986 998  66776654   5677889999999999877776   454   


Q ss_pred             eEEEcCceeEEEecccCCC
Q 048589          264 QFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       264 kf~Ingk~iWaRky~pk~~  282 (283)
                        .|+|+.+-++...|++.
T Consensus        78 --~~~g~~l~v~~a~~~~~   94 (102)
T 1x5s_A           78 --SVDGRQIRVDQAGKSSD   94 (102)
T ss_dssp             --CTTSCCCEEEEEECCCC
T ss_pred             --EECCeEEEEEECCCCCC
Confidence              37999998877766653

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=3.9e-07  Score=68.20  Aligned_cols=81  Identities=16%  Similarity=0.264  Sum_probs=63.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ++..+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||.|.|.+.+....++...+.  ..|+
T Consensus         2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   73 (95)
T 2dnz_A            2 SSGSSGLYV---GSLHFNITEDMLRGIFEP-FGK--IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG--FELA   73 (95)
T ss_dssp             CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT--CCSS
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence            567789999   6877  999999999986 998  66666654   577889999999999997777642111  2579


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|+..
T Consensus        74 g~~l~V~~a~~~~~   87 (95)
T 2dnz_A           74 GRPMRVGHVTERLD   87 (95)
T ss_dssp             SSCCEEEESSCCCC
T ss_pred             CcEEEEEEcccccC
Confidence            99999998887764

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.48  E-value=6.8e-07  Score=68.98  Aligned_cols=82  Identities=21%  Similarity=0.332  Sum_probs=65.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||.  |+.|.+...++...||.|.|.+.+..+.++...+.  ..|+|+
T Consensus        18 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~   89 (109)
T 1x4a_A           18 AGNNDCRIYV---GNLPPDIRTKDIEDVFYK-YGA--IRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYDGY   89 (109)
T ss_dssp             CCCCSSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT--CEETTE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCe
Confidence            4567799998   6877  999999999997 999  88888866666789999999999998887742111  257999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|+++
T Consensus        90 ~l~V~~a~~~~~  101 (109)
T 1x4a_A           90 RLRVEFPRSGRG  101 (109)
T ss_dssp             ECEEECCCCCCC
T ss_pred             EEEEEEcccCCC
Confidence            999988877654

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=4.2e-07  Score=68.98  Aligned_cols=82  Identities=18%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..  .++...||.|.|.+.+....++..-+.  ..++
T Consensus        13 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   84 (100)
T 2do4_A           13 TSLEKHKLFI---SGLPFSCTKEELEEICKA-HGT--VKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG--MTIK   84 (100)
T ss_dssp             SCCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--EESS
T ss_pred             cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence            3566789999   6888  999999999996 998  66666654  577789999999999998887742111  4689


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|++.
T Consensus        85 g~~l~v~~a~~~~~   98 (100)
T 2do4_A           85 ENIIKVAISNSGPS   98 (100)
T ss_dssp             SCEEEEEECCCCSC
T ss_pred             CEEEEEEECCCCCC
Confidence            99999999888865

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.46  E-value=2e-06  Score=65.52  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ...+.+++||   +|.|  ++++||+++|.+ ||.  |+.|.|.. .+....||+|.|.+.+....++..-+.  ..|+|
T Consensus        11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g   82 (103)
T 2cqi_A           11 DDGQPRTLYV---GNLSRDVTEVLILQLFSQ-IGP--CKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG--RKILG   82 (103)
T ss_dssp             CSCCCCEEEE---ESCCTTCCHHHHHHHHHH-HSC--EEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT--EEETT
T ss_pred             CCCCCCEEEE---eCCCccCCHHHHHHHHHh-cCC--EeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC--CCcCC
Confidence            3556789998   7888  999999999986 998  77777655 445678999999999998777652221  25899


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-++...|++
T Consensus        83 ~~l~V~~a~~~~   94 (103)
T 2cqi_A           83 KEVKVNWATTPS   94 (103)
T ss_dssp             EEEEEEECCCTT
T ss_pred             CeEEEEECCCCc
Confidence            999888777654

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.45  E-value=8.6e-07  Score=69.10  Aligned_cols=80  Identities=20%  Similarity=0.327  Sum_probs=66.1

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||+|.|.+.+....++.. +  ...|+
T Consensus        24 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~--~~~~~   94 (116)
T 1x4b_A           24 KEQFRKLFI---GGLSFETTEESLRNYYEQ-WGK--LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R--PHSID   94 (116)
T ss_dssp             HHHHTEEEE---ECCTTCCCHHHHHHHHTS-SCC--CSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C--SEEET
T ss_pred             cCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C--CcEEC
Confidence            445689988   7888  999999999976 998  55555543   577889999999999999999987 3  35789


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...||..
T Consensus        95 g~~l~V~~a~~~~~  108 (116)
T 1x4b_A           95 GRVVEPKRAVAREE  108 (116)
T ss_dssp             TEEEEEECCSSCCC
T ss_pred             CEEEEEEECCCCcc
Confidence            99999999888764

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.44  E-value=8.3e-07  Score=66.52  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEE-Ee-ec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDI-KM-GN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v-~m-~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      +.+.+|+||   +|.|  ++++||+++|.+ ||.  |+.+ .+ .+  .++...||.|.|.+++....++...+..  .|
T Consensus         2 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~   73 (96)
T 1x5t_A            2 SSGSSGIFI---GNLDPEIDEKLLYDTFSA-FGV--ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ--YL   73 (96)
T ss_dssp             CSCCCEEEE---ECCCTTCCHHHHHHHHHT-TSC--BSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC--EE
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EE
Confidence            456789999   6888  999999999997 998  5444 33 32  6778899999999999988887643322  47


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|++.
T Consensus        74 ~g~~l~v~~a~~~~~   88 (96)
T 1x5t_A           74 CNRPITVSYAFKKDS   88 (96)
T ss_dssp             TTEECEEEESCCCCC
T ss_pred             CCEEEEEEEecccCC
Confidence            999999988877654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.44  E-value=6.3e-07  Score=68.07  Aligned_cols=83  Identities=20%  Similarity=0.294  Sum_probs=65.8

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||.|.|.+.+....++...+.  ..
T Consensus         7 ~~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~   78 (102)
T 2cqb_A            7 GMATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD--ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SE   78 (102)
T ss_dssp             CSCCCCSCEEE---ESCCSSCCHHHHHHHHTT-TSC--CCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT--EE
T ss_pred             CcCCCCCEEEE---eCCCCCCCHHHHHHHhhc-cCC--EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC--CE
Confidence            34667899999   7888  999999999987 998  66666643   578899999999999998877742111  36


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      |+|+.+-++...|++.
T Consensus        79 ~~g~~l~V~~a~~~~~   94 (102)
T 2cqb_A           79 LFGRTIRVNLAKPMRI   94 (102)
T ss_dssp             ETTEEEEEEECCCCCC
T ss_pred             ECCcEEEEEeCCCCCC
Confidence            8999999988887764

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.43  E-value=2.6e-06  Score=68.20  Aligned_cols=83  Identities=24%  Similarity=0.328  Sum_probs=65.3

Q ss_pred             CCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589          191 ANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQF  265 (283)
Q Consensus       191 ~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf  265 (283)
                      ...+++.|++||   +|.|  ++++||+++|.+ ||+  |+.|.+-.   +++...||+|.|.+.+....++..-+.  .
T Consensus        36 ~~~~~~~~~l~V---~nLp~~~~~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~  107 (139)
T 1u6f_A           36 NPEPDVLRNLMV---NYIPTTVDEVQLRQLFER-YGP--IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG--F  107 (139)
T ss_dssp             SCCTTTTSEEEE---ESCSTTCCHHHHHHHHHH-HSC--EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT--E
T ss_pred             CCCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--C
Confidence            345667899999   7888  999999999997 998  66676653   567789999999999998887763222  3


Q ss_pred             EEcCceeEEEecccCC
Q 048589          266 NIHGKDVRVRRFVPKR  281 (283)
Q Consensus       266 ~Ingk~iWaRky~pk~  281 (283)
                      .|+|+.+-++...+++
T Consensus       108 ~~~g~~l~v~~a~~~~  123 (139)
T 1u6f_A          108 NILNKRLKVALAASGH  123 (139)
T ss_dssp             ECSSCEEEEEESSCCC
T ss_pred             EECCeEEEEEECCCCC
Confidence            5899999888777654

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=98.43  E-value=2.8e-07  Score=70.24  Aligned_cols=78  Identities=26%  Similarity=0.396  Sum_probs=63.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ..+.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.|..  .++...||.|.|.+.+..+..+.    -...++|
T Consensus         6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g   75 (102)
T 2xs2_A            6 KIMPNTVFV---GGIDVRMDETEIRSFFAR-YGS--VKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE----SQINFHG   75 (102)
T ss_dssp             EEEEEEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT----CCCEETT
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eEEEEEEECCCCCccceEEEEECCHHHHHHHHh----CCCeECC
Confidence            345688888   7888  999999999986 998  66666654  67788999999999999999998    2347999


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-+.+..||.
T Consensus        76 ~~l~v~~a~~~~   87 (102)
T 2xs2_A           76 KKLKLGPAIRKQ   87 (102)
T ss_dssp             EECEEEEEEECC
T ss_pred             EEEEEEECCcCc
Confidence            999888777664

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.43  E-value=6.2e-07  Score=70.30  Aligned_cols=81  Identities=10%  Similarity=0.062  Sum_probs=65.2

Q ss_pred             CCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCcee-eEEEee-c-CCCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589          191 ANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCV-EDIKMG-N-CRDQSLYARVIVRSPAFITLILGENELMQF  265 (283)
Q Consensus       191 ~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cv-e~v~m~-~-~~~qplfariVf~s~~~vd~vL~g~~~~kf  265 (283)
                      ...+.+.+|+||   +|.|  ++++||++||.. ||.  | +.|.|- + .++...||+|.|.+++.....|.- +  ..
T Consensus         9 ~~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~--v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~--~~   79 (114)
T 2cpy_A            9 GDVNSAKVCAHI---TNIPFSITKMDVLQFLEG-IPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-H--RK   79 (114)
T ss_dssp             CSCCSCCCEEEE---ESCCTTSCHHHHHHHTTT-SCC--CSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-C--SE
T ss_pred             CCCCCCccEEEE---eCcCCcCCHHHHHHHHHh-CCC--cCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C--CC
Confidence            356778899988   8988  999999999987 897  5 444443 3 788899999999999999999875 2  25


Q ss_pred             EEcCceeEEEecccC
Q 048589          266 NIHGKDVRVRRFVPK  280 (283)
Q Consensus       266 ~Ingk~iWaRky~pk  280 (283)
                      .|+|+.+-++...|+
T Consensus        80 ~~~gr~i~v~~a~~~   94 (114)
T 2cpy_A           80 KLNGREAFVHVVTLE   94 (114)
T ss_dssp             EETTEEEEEEEECHH
T ss_pred             ccCCeEEEEEECCHH
Confidence            789999988776554

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.42  E-value=1.9e-06  Score=65.74  Aligned_cols=82  Identities=11%  Similarity=0.212  Sum_probs=64.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHHhCCC-CeeeE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLILGEN-ELMQF  265 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~vL~g~-~~~kf  265 (283)
                      ...+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|..    .++...||+|.|.+.+....++... +  ..
T Consensus        11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~   82 (107)
T 2cph_A           11 KKQTTSKILV---RNIPFQANQREIRELFST-FGE--LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH--ST   82 (107)
T ss_dssp             CSSCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT--CC
T ss_pred             cCCCCCEEEE---eCCCCcCCHHHHHHHHHc-cCC--eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc--CC
Confidence            3556789998   7888  999999999997 998  77777742    6778899999999999988776421 1  12


Q ss_pred             EEcCceeEEEecccCCC
Q 048589          266 NIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       266 ~Ingk~iWaRky~pk~~  282 (283)
                      .|+|+.+-++...|++.
T Consensus        83 ~~~g~~l~v~~a~~~~~   99 (107)
T 2cph_A           83 HLYGRRLVLEWADSEVT   99 (107)
T ss_dssp             BSSSCBCEEEECCCCCC
T ss_pred             eECCCEEEEEeCCCCCC
Confidence            58899998888877654

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.42  E-value=4.5e-07  Score=69.15  Aligned_cols=81  Identities=15%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   .++...||.|.|.+.+....++...+.  ..|+
T Consensus        12 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~   83 (103)
T 2cq0_A           12 ADDNATIRV---TNLSEDTRETDLQELFRP-FGS--ISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYD   83 (103)
T ss_dssp             CSSSEEEEE---ESCCTTCCHHHHHTTSTT-TCC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEET
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC--CeeC
Confidence            567799998   6888  999999999996 998  66776654   577788999999999998877763221  2589


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|++.
T Consensus        84 g~~l~v~~a~~~~~   97 (103)
T 2cq0_A           84 HLILNVEWAKPSTN   97 (103)
T ss_dssp             TEECEEEESSCCCC
T ss_pred             CcEEEEEECCCCCC
Confidence            99999988887764

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.42  E-value=4.9e-07  Score=70.69  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ..+.||+||   +|.|  +|++||+++|.+ ||+  |++|.|-.  .++..+||+|.|.+++....++. .+  ...++|
T Consensus         8 ~~~~~~lfV---~~Lp~~~te~~L~~~F~~-~G~--v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~--~~~~~g   78 (103)
T 1s79_A            8 DVKNRSVYI---KGFPTDATLDDIKEWLED-KGQ--VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP--GQKYKE   78 (103)
T ss_dssp             CSGGGCEEE---ECCCTTCCHHHHHHHHHT-SSC--EEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS--CCCCTT
T ss_pred             cCCCCEEEE---ECCCCCCCHHHHHHHHhh-cCC--EEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC--CCEECC
Confidence            445699998   8988  999999999996 998  67777754  57788999999999999998887 22  236899


Q ss_pred             ceeEEE
Q 048589          270 KDVRVR  275 (283)
Q Consensus       270 k~iWaR  275 (283)
                      +.+-++
T Consensus        79 r~l~V~   84 (103)
T 1s79_A           79 TDLLIL   84 (103)
T ss_dssp             TTCEEE
T ss_pred             EEEEEE
Confidence            988655

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.41  E-value=1.3e-06  Score=67.03  Aligned_cols=84  Identities=19%  Similarity=0.175  Sum_probs=66.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      +.+.+|+||   +|.|  ++++||+++|.+ ||+ .|+.|.+- .   +++...||+|.|.+.+.....+..-+.-.+.+
T Consensus         5 s~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~   79 (109)
T 2dis_A            5 SSGNCRLFI---GGIPKMKKREEILEEIAK-VTE-GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL   79 (109)
T ss_dssp             CCCSEEEEE---ECCCTTSCHHHHHHHHHH-HST-TEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred             ccCCCEEEE---eCCCCcCCHHHHHHHHHH-hcC-CceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence            557899998   7888  999999999997 997 68888875 2   56889999999999999888876432111368


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|++.
T Consensus        80 ~g~~l~V~~a~~~~~   94 (109)
T 2dis_A           80 WGHQIAVDWAEPEID   94 (109)
T ss_dssp             TTBCCEEEESCSSCS
T ss_pred             cCCeEEEEEcCCCCC
Confidence            999998887777653

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=8.8e-07  Score=67.52  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .++.+|+||   +|.|  ++++||+++|.+ ||.  |+.|.+..   +++...||.|.|.+.+....++..-+.  ..++
T Consensus        10 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~   81 (103)
T 2dnm_A           10 VDGMITLKV---DNLTYRTSPDSLRRVFEK-YGR--VGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG--AELD   81 (103)
T ss_dssp             CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS--CCBT
T ss_pred             CCCCeEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence            456789998   6888  999999999996 998  77777754   577889999999999887777652111  1389


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...++++
T Consensus        82 g~~l~V~~a~~~~~   95 (103)
T 2dnm_A           82 GRELRVQVARYGRR   95 (103)
T ss_dssp             TBCCEEEECSSCCS
T ss_pred             CcEEEEEECCcCCC
Confidence            99998887776543

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.40  E-value=1.2e-06  Score=64.37  Aligned_cols=80  Identities=18%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---C-CCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---C-RDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~-~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ...+|+||   +|.|  ++++||+++|.+ ||+  |+.+.+..   + ++...||.|.|.+.+....++..-+.  ..++
T Consensus         2 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   73 (88)
T 4a8x_A            2 MKPTKVHI---GRLTRNVTKDHIMEIFST-YGK--IKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG--GQID   73 (88)
T ss_dssp             CCCCEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC--CeEC
Confidence            34578888   7888  999999999986 998  77777754   2 23788999999999998777652111  2589


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-+....|+++
T Consensus        74 g~~l~v~~a~~~~~   87 (88)
T 4a8x_A           74 GQEITATAVLAPWP   87 (88)
T ss_dssp             TEECEEEEECCCCC
T ss_pred             CeEEEEEECCCCCC
Confidence            99999998887764

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.40  E-value=2.8e-06  Score=64.33  Aligned_cols=80  Identities=16%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             CCCCCCceEEEEccCCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          192 NDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      ..+.+.+|+||   +|+.++++||+++|.+ ||+  |+.|.|   ++...||+|.|.+.+.....+..-+.  ..|+|+.
T Consensus        10 ~~~~~~~~l~V---~n~~~t~~~l~~~F~~-~G~--i~~v~i---~~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~   78 (97)
T 1x5p_A           10 RAPRKGNTLYV---YGEDMTPTLLRGAFSP-FGN--IIDLSM---DPPRNCAFVTYEKMESADQAVAELNG--TQVESVQ   78 (97)
T ss_dssp             CCCCCCSEEEE---ECSSCCHHHHHHHHTT-TSC--EEEEEE---ETTTTEEEEEESSHHHHHHHHHHTTT--EEETTEE
T ss_pred             CCCCCCCEEEE---cCCCCCHHHHHHHHhh-CCC--EEEEEe---cCCCCEEEEEECCHHHHHHHHHHhCC--CeECCeE
Confidence            44567789999   4689999999999986 998  788888   35667999999999998887753222  2579999


Q ss_pred             eEEEecccCCC
Q 048589          272 VRVRRFVPKRA  282 (283)
Q Consensus       272 iWaRky~pk~~  282 (283)
                      +-++...|++.
T Consensus        79 l~v~~a~~~~~   89 (97)
T 1x5p_A           79 LKVNIARKQPM   89 (97)
T ss_dssp             EEEECCSSCCC
T ss_pred             EEEEECCCCCC
Confidence            98887776653

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.39  E-value=6.2e-07  Score=66.72  Aligned_cols=78  Identities=17%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILG---ENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I  267 (283)
                      +.+.+++||   +|.|  ++++||+++|.+ ||+  |+.+.+.. .++...||.|.|.+.+....++.   |.     .+
T Consensus         5 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~-----~~   73 (92)
T 2dgv_A            5 SSGACQIFV---RNLPFDFTWKMLKDKFNE-CGH--VLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM-----KL   73 (92)
T ss_dssp             SSSCCEEEE---CSCCTTCCHHHHHHHHHT-TSC--EEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC-----CB
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence            456789988   8888  999999999997 998  66666654 77888999999999998877754   43     38


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|++.
T Consensus        74 ~g~~l~v~~a~~~~~   88 (92)
T 2dgv_A           74 SGREIDVRIDRNASG   88 (92)
T ss_dssp             TTBCCCCEECSCCSS
T ss_pred             CCcEEEEEEcCCCCC
Confidence            999998777766553

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.39  E-value=1.2e-06  Score=66.04  Aligned_cols=81  Identities=16%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-C---C--CCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-C---R--DQSLYARVIVRSPAFITLILGENELMQF  265 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~---~--~qplfariVf~s~~~vd~vL~g~~~~kf  265 (283)
                      +.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+.. .   +  +...||.|.|.+.+....++..-+.  .
T Consensus         2 s~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g--~   73 (98)
T 2cpf_A            2 SSGSSGLFI---KNLNFSTTEETLKGVFSK-VGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--H   73 (98)
T ss_dssp             CCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--C
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC--C
Confidence            457789999   7888  999999999985 998  67777654 2   2  6678999999999998887763221  1


Q ss_pred             EEcCceeEEEecccCCC
Q 048589          266 NIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       266 ~Ingk~iWaRky~pk~~  282 (283)
                      .|+|+.+-++...|+.+
T Consensus        74 ~~~g~~l~V~~a~~~~~   90 (98)
T 2cpf_A           74 TVDGHKLEVRISERATK   90 (98)
T ss_dssp             EETTEECEEECSSCSSC
T ss_pred             eeCCeEEEEEEccCCCC
Confidence            68999999988877654

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=7.6e-07  Score=69.78  Aligned_cols=83  Identities=19%  Similarity=0.285  Sum_probs=62.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--C---CCCCceEEEEecChHHHHHHh------CCC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--C---RDQSLYARVIVRSPAFITLIL------GEN  260 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~---~~qplfariVf~s~~~vd~vL------~g~  260 (283)
                      ..+.|++||   +|.|  ++++||+++|.+ ||+ .. ...+.+  +   ++...||+|.|.+++....++      +|.
T Consensus         5 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~-i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~   78 (114)
T 2dnl_A            5 SSGSRKVFV---GGLPPDIDEDEITASFRR-FGP-LV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK   78 (114)
T ss_dssp             SSCCCCEEE---ECCCTTCCHHHHHHHTTT-TCC-CC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred             CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCC-EE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence            456799998   7888  999999999996 998 55 444444  3   688999999999999988777      443


Q ss_pred             CeeeE---EEcCceeEEEecccCCC
Q 048589          261 ELMQF---NIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       261 ~~~kf---~Ingk~iWaRky~pk~~  282 (283)
                      ....-   .+.+|.+++|.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~v~p~~~~d~  103 (114)
T 2dnl_A           79 LYLCVSSPTIKDKPVQIRPWNLSDS  103 (114)
T ss_dssp             EEEEECCSSSCSEEEEEECCCCCCC
T ss_pred             EEEeccCCCcCCCeeeccCCcccCC
Confidence            21111   46678889988877654

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.36  E-value=1.3e-06  Score=67.91  Aligned_cols=82  Identities=18%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|..   .++...||+|.|.+.+....++..-+.  ..|
T Consensus        21 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~   92 (115)
T 2cpz_A           21 EGPEGANLFI---YHLPQEFGDQDLLQMFMP-FGN--VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQI   92 (115)
T ss_dssp             CCSTTCCEEE---ESCCSSCCHHHHHHHHGG-GSC--CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred             CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC--CEE
Confidence            3456789998   7888  999999999996 998  55665543   577789999999999998887742111  258


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|++.
T Consensus        93 ~g~~l~V~~a~~~~~  107 (115)
T 2cpz_A           93 GMKRLKVQLKRSKND  107 (115)
T ss_dssp             TTEECEEECCCCSCC
T ss_pred             CCEEEEEEEcCCCCc
Confidence            999999888777654

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.36  E-value=1.4e-06  Score=67.13  Aligned_cols=82  Identities=20%  Similarity=0.165  Sum_probs=64.2

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ...+.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.|-.   +++...||.|.|.+.+....++..-+.  ..|
T Consensus        22 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~   93 (110)
T 1oo0_B           22 RSVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE--IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEI   93 (110)
T ss_dssp             CBTTBEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence            3456789998   7888  999999999986 998  77777753   577789999999999998777652111  257


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|+++
T Consensus        94 ~g~~l~V~~a~~~~~  108 (110)
T 1oo0_B           94 MGQTIQVDWCFVKGP  108 (110)
T ss_dssp             TTEECEEEESEESSC
T ss_pred             CCcEEEEEEcccCCC
Confidence            999998887776654

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=9.4e-07  Score=67.35  Aligned_cols=83  Identities=18%  Similarity=0.091  Sum_probs=64.6

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|.. .++...||.|.|.+.+....++...+.  ..|+
T Consensus        10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~   81 (103)
T 2d9p_A           10 ITRYQVVNLYV---KNLDDGIDDERLRKAFSP-FGT--ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG--RIVA   81 (103)
T ss_dssp             CCCSSCCCEEE---ECCCTTCCHHHHHHTTTT-TSC--EEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT--CBSS
T ss_pred             cCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence            44667899999   6888  999999999996 998  66676654 677889999999999998777652111  1369


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|++.
T Consensus        82 g~~l~V~~a~~~~~   95 (103)
T 2d9p_A           82 TKPLYVALAQRKEE   95 (103)
T ss_dssp             SSBCEEEECSSCCC
T ss_pred             CcEEEEEEeccccc
Confidence            99998888777653

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=7.9e-07  Score=67.96  Aligned_cols=81  Identities=16%  Similarity=0.205  Sum_probs=63.5

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||.|.|.+.+....++..-+.  ..|+
T Consensus        20 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   91 (106)
T 1p27_B           20 SVEGWILFV---TGVHEEATEEDIHDKFAE-YGE--IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDLM   91 (106)
T ss_dssp             BTTBEEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT--CBSS
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC--eEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC--CEEC
Confidence            456789998   6888  999999999986 998  66666653   577889999999999987777652111  1588


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|+++
T Consensus        92 g~~l~V~~a~~~~~  105 (106)
T 1p27_B           92 GQPISVDWCFVRGP  105 (106)
T ss_dssp             SSBCEEEESEESSC
T ss_pred             CcEEEEEeecCCCC
Confidence            99998888877764

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.35  E-value=1.6e-06  Score=68.15  Aligned_cols=79  Identities=16%  Similarity=0.235  Sum_probs=60.2

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      ....++||   +|.|  ++++||+++|.+ ||+  |++|.+-. .+....||+|.|.+.+.....+...+.  ..|+||.
T Consensus         3 ~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~--v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~--~~~~g~~   74 (115)
T 4f25_A            3 LGSGNIFI---KNLDKSIDNKALYDTFSA-FGN--ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRK   74 (115)
T ss_dssp             --CCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT--CEETTEE
T ss_pred             CCCCEEEE---CCCCCCCCHHHHHHHHhc-cCC--EEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC--CEECCEE
Confidence            34557888   8888  999999999986 998  66666544 555678999999999998777642111  2689999


Q ss_pred             eEEEecccCC
Q 048589          272 VRVRRFVPKR  281 (283)
Q Consensus       272 iWaRky~pk~  281 (283)
                      +-+..+.|++
T Consensus        75 i~V~~a~~~~   84 (115)
T 4f25_A           75 VFVGRFKSRK   84 (115)
T ss_dssp             CEEEESSCCC
T ss_pred             EEEEECCCcc
Confidence            9998888765

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=9.6e-07  Score=68.82  Aligned_cols=83  Identities=13%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             CCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          191 ANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       191 ~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .....+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+-. .+....||.|.|.+.+....++..-+.  ..|
T Consensus        23 ~~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~   94 (109)
T 2err_A           23 TENKSQPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK--ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVV   94 (109)
T ss_dssp             CSCTTCCCEEEE---ESCCTTCCHHHHHHHGGG-TCC--CSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT--CEE
T ss_pred             ccCCCCCCEEEE---ECCCCcCCHHHHHHHHHh-cCC--EEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence            345667899998   7888  999999999986 998  66666654 555789999999999987777652111  148


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+-++...||.
T Consensus        95 ~g~~l~V~~a~~~~  108 (109)
T 2err_A           95 EGRKIEVNNATARV  108 (109)
T ss_dssp             TTEECEEEECCCSC
T ss_pred             CCEEEEEEECCCCc
Confidence            99999998887764

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=2.5e-06  Score=63.56  Aligned_cols=82  Identities=20%  Similarity=0.174  Sum_probs=64.3

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ | . +++.-.+.+ .++...||.|.|.+++.....|. .+.  ..|+|
T Consensus         6 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~-~-i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g--~~~~g   76 (91)
T 2dgw_A            6 SGTTCHTVKL---RGAPFNVTEKNVMEFLAP-L-K-PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR--EYMGG   76 (91)
T ss_dssp             CCCCCCEEEE---ECCCSSCCHHHHHHHHTT-S-C-CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS--EEETT
T ss_pred             CCCCccEEEE---ECCCCCCCHHHHHHHHhh-C-C-ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC--ceeCC
Confidence            4567789988   7888  999999999997 6 6 343333333 67788999999999999888887 442  46899


Q ss_pred             ceeEEEecccCCCC
Q 048589          270 KDVRVRRFVPKRAS  283 (283)
Q Consensus       270 k~iWaRky~pk~~~  283 (283)
                      +.+-++...|++.|
T Consensus        77 r~i~v~~a~~~~~s   90 (91)
T 2dgw_A           77 RYIEVFREKSGPSS   90 (91)
T ss_dssp             EEEEEEEESSCCCC
T ss_pred             cEEEEEECCcCCCC
Confidence            99999988887654

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.33  E-value=1.1e-06  Score=70.93  Aligned_cols=75  Identities=21%  Similarity=0.408  Sum_probs=62.0

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ++.|++||   +|.|  ++++||+++|.+ ||+  |+.|.+-.   ++++.+||.|.|.+++.....+....    .++|
T Consensus         1 k~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~----~~~g   70 (167)
T 2cjk_A            1 KESCKMFI---GGLNWDTTEDNLREYFGK-YGT--VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH----ILDG   70 (167)
T ss_dssp             CGGGEEEE---CSCCTTCCHHHHHHHHTT-TCC--EEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCC----EETT
T ss_pred             CCCcEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEECCCCCCccceEEEEEccHHHHHHHHhccc----ccCC
Confidence            35789998   8998  999999999996 998  66666543   68889999999999999998888533    7899


Q ss_pred             ceeEEEeccc
Q 048589          270 KDVRVRRFVP  279 (283)
Q Consensus       270 k~iWaRky~p  279 (283)
                      +.+.++...|
T Consensus        71 ~~i~v~~~~~   80 (167)
T 2cjk_A           71 KVIDPKRAIP   80 (167)
T ss_dssp             EECCCEECCC
T ss_pred             eEcccccccc
Confidence            9987766554

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.33  E-value=5.1e-07  Score=64.91  Aligned_cols=70  Identities=19%  Similarity=0.324  Sum_probs=57.6

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      +|+||   +|.|  ++++|++++|.+ ||+  |+.+.+..   +++...||.|.|.+++.....+...+   ..++|+.+
T Consensus         1 ~~l~v---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l   71 (77)
T 1uaw_A            1 CKMFI---GGLSWQTTQEGLREYFGQ-FGE--VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTI   71 (77)
T ss_dssp             CCEEE---ESCCSSCCSHHHHHHHTT-TSC--CCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCC
T ss_pred             CEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC---CccCCEEE
Confidence            46776   7888  999999999986 998  56666654   57888999999999999999998655   57899988


Q ss_pred             EEEe
Q 048589          273 RVRR  276 (283)
Q Consensus       273 WaRk  276 (283)
                      -++.
T Consensus        72 ~v~~   75 (77)
T 1uaw_A           72 DPKV   75 (77)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7664

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.32  E-value=7.3e-07  Score=72.13  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=66.2

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+-.   +++...||.|.|.+++....++..-+.  ..
T Consensus        41 ~~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng--~~  112 (129)
T 2kxn_B           41 ANPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP--IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--ME  112 (129)
T ss_dssp             SCCCCSSCBCE---ETCTTSCCHHHHHHHHTT-TSC--EEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT--CC
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CE
Confidence            34667899988   7888  999999999986 998  66666653   578889999999999998777652111  25


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      |+|+.+-++...||++
T Consensus       113 i~g~~l~V~~a~~~~p  128 (129)
T 2kxn_B          113 LDGRRIRVDFSITKRP  128 (129)
T ss_dssp             SSSSCCEESCCSSSSC
T ss_pred             ECCEEEEEEEecCCCC
Confidence            7999999999888876

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.32  E-value=2.7e-06  Score=62.18  Aligned_cols=71  Identities=23%  Similarity=0.388  Sum_probs=57.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQF  265 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~kf  265 (283)
                      +.+.|++||   +|.|  ++++||+++|.+ ||+  |+.+.+-.   .++...||.|.|.+.+.....+   +|.     
T Consensus         4 ~~~~~~l~V---~nl~~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----   72 (85)
T 3mdf_A            4 ATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD--ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-----   72 (85)
T ss_dssp             CCCSSEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred             CCCCCEEEE---ECCCCCCCHHHHHHHHhc-cCC--EEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-----
Confidence            567799988   7888  999999999986 998  77777643   6778999999999999977776   453     


Q ss_pred             EEcCceeEEE
Q 048589          266 NIHGKDVRVR  275 (283)
Q Consensus       266 ~Ingk~iWaR  275 (283)
                      .++|+.+-++
T Consensus        73 ~~~g~~l~v~   82 (85)
T 3mdf_A           73 ELFGRTIRVN   82 (85)
T ss_dssp             EETTEECEEE
T ss_pred             EECCcEEEEE
Confidence            4789988665

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.32  E-value=2.4e-06  Score=66.64  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeee
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQ  264 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~k  264 (283)
                      .+++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+-.   +++...||.|.|.+.+....++   +|.    
T Consensus        22 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~----   91 (108)
T 2jrs_A           22 GSAGPMRLYV---GSLHFNITEDMLRGIFEP-FGR--IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF----   91 (108)
T ss_dssp             SCSSCEEEEE---ECCCSSCCHHHHHHHHTT-TSC--EEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC----
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC----
Confidence            4567789988   6887  999999999976 998  66666653   5777899999999999988776   453    


Q ss_pred             EEEcCceeEEEecccCC
Q 048589          265 FNIHGKDVRVRRFVPKR  281 (283)
Q Consensus       265 f~Ingk~iWaRky~pk~  281 (283)
                       .|+|+.+-++...||.
T Consensus        92 -~i~g~~l~V~~a~~k~  107 (108)
T 2jrs_A           92 -ELAGRPMKVGHVTERT  107 (108)
T ss_dssp             -CSSSSCCEEECSCSSC
T ss_pred             -EECCEEEEEEEcccCC
Confidence             5899999998887774

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=3.3e-06  Score=64.57  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=63.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---C-CCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---C-RDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~-~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+..+|+||   +|.|  ++++||+++|.. ||   |+.|.|..   + ++...||.|.|.+++....+| ..+.  ..
T Consensus        11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~   80 (104)
T 1wi8_A           11 PKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ES   80 (104)
T ss_dssp             CSSSCEEEEE---ESCCSSCCHHHHHHHTTT-SC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT--CE
T ss_pred             CCCCCCEEEE---eCCCCcCCHHHHHHHHHH-CC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC--CE
Confidence            3456689988   6877  999999999996 87   77777754   2 777899999999999988887 3222  25


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      |+|+.+.++...|++.
T Consensus        81 ~~g~~l~V~~a~~~~~   96 (104)
T 1wi8_A           81 LGNKRIRVDVADQAQD   96 (104)
T ss_dssp             ETTEECEEEECCCCCC
T ss_pred             eCCcEEEEEEccCCCC
Confidence            8999999998888764

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.31  E-value=3.8e-06  Score=63.32  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .|++||   +|.|  ++++||+++|.+ ||+  |++|.+-.   +++...||.|.|.+.+....++..-+.  ..|+|+.
T Consensus         2 ~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~   73 (96)
T 2x1f_A            2 SRVVYL---GSIPYDQTEEQILDLCSN-VGP--VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG--YQLGSRF   73 (96)
T ss_dssp             CSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT--CEETTEE
T ss_pred             CcEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeECCeE
Confidence            478988   6888  999999999996 998  77777754   578899999999999998776642111  2689999


Q ss_pred             eEEEecccCC
Q 048589          272 VRVRRFVPKR  281 (283)
Q Consensus       272 iWaRky~pk~  281 (283)
                      +-++...|++
T Consensus        74 l~V~~a~~~~   83 (96)
T 2x1f_A           74 LKCGYSSNSD   83 (96)
T ss_dssp             CEEEECSCSS
T ss_pred             EEEEEcCCCC
Confidence            9888877765

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=2.6e-06  Score=63.52  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=60.1

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..++..+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||.|.|.+++....++..-+.  ..
T Consensus        10 ~~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~   81 (95)
T 2cqc_A           10 ANPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP--IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--ME   81 (95)
T ss_dssp             CSCCGGGCEEE---ESCCSSCCHHHHHHHHHT-TSC--EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT--EE
T ss_pred             CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC--CE
Confidence            34667899999   6888  999999999987 998  66776653   567788999999999998877653221  46


Q ss_pred             EcCceeEEEe
Q 048589          267 IHGKDVRVRR  276 (283)
Q Consensus       267 Ingk~iWaRk  276 (283)
                      |+|+.+-++.
T Consensus        82 ~~g~~l~v~~   91 (95)
T 2cqc_A           82 LDGRRIRVSG   91 (95)
T ss_dssp             ETTEEEEEEC
T ss_pred             ECCEEEEEEe
Confidence            7899887654

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=2.2e-06  Score=64.54  Aligned_cols=76  Identities=26%  Similarity=0.416  Sum_probs=59.3

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      +...|++||   +|.|  ++++||+++|.+ ||+  |+.|.+.. .++   ||+|.|.+++..+.++. .+  ...|+|+
T Consensus         5 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~--g~~~~g~   72 (94)
T 2e5g_A            5 SSGLRSVFV---SGFPRGVDSAQLSEYFLA-FGP--VASVVMDKDKGV---FAIVEMGDVGAREAVLS-QS--QHSLGGH   72 (94)
T ss_dssp             CTTCCEEEE---ECCCTTCCHHHHHHHGGG-TSC--EEEEEECSSSCC---EEEEEESSHHHHHHHHT-CS--CCEETTE
T ss_pred             cCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cC--CeEECCE
Confidence            445689988   7888  999999999996 998  66774443 333   99999999999888887 33  2468999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-++...++.
T Consensus        73 ~l~V~~a~~~~   83 (94)
T 2e5g_A           73 RLRVRPREQKE   83 (94)
T ss_dssp             ECCCBCSCCSC
T ss_pred             EEEEEECCcCC
Confidence            99888766554

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.30  E-value=2.1e-06  Score=66.64  Aligned_cols=77  Identities=21%  Similarity=0.384  Sum_probs=62.4

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I  267 (283)
                      +|+..+|+||   +|.|  ++++||+++|.+ ||.  |++|.|-..++...||.|.|.+.+.....+.   |.     .+
T Consensus         4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~   72 (115)
T 3lqv_A            4 PPEVNRILYI---RNLPYKITAEEMYDIFGK-YGP--IRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGF-----NV   72 (115)
T ss_dssp             CTTCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTC-----BS
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCC-----EE
Confidence            4667799998   7888  899999999996 998  7778776656668999999999988777654   54     47


Q ss_pred             cCceeEEEecccC
Q 048589          268 HGKDVRVRRFVPK  280 (283)
Q Consensus       268 ngk~iWaRky~pk  280 (283)
                      +|+.+-+..+.|+
T Consensus        73 ~g~~l~v~~a~~~   85 (115)
T 3lqv_A           73 SNRYLVVLYYNAN   85 (115)
T ss_dssp             SSCBCEEEECCHH
T ss_pred             CCeEEEEEEecCC
Confidence            8999988877664

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=2.4e-06  Score=64.51  Aligned_cols=82  Identities=13%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+...+|+||   +|.|  ++++||+++|.+ ||+ .+..|.+..   +++...||.|.|.+++....++..-+.  ..+
T Consensus         5 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~   77 (99)
T 2div_A            5 SSGMAASLWM---GDLEPYMDENFISRAFAT-MGE-TVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING--KPL   77 (99)
T ss_dssp             CCSSSSEEEE---CSCCTTCCHHHHHHHHHH-TTC-CCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT--SEE
T ss_pred             CCCCccEEEE---eCCCCCCCHHHHHHHHHH-hCC-cceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC--Ccc
Confidence            4566799998   8888  999999999997 998 441665543   678889999999999998877763222  257


Q ss_pred             cCce----eEEEecccCC
Q 048589          268 HGKD----VRVRRFVPKR  281 (283)
Q Consensus       268 ngk~----iWaRky~pk~  281 (283)
                      +|+.    +-+....|..
T Consensus        78 ~g~~~~~~l~v~~a~~~~   95 (99)
T 2div_A           78 PGATPAKRFKLNYATYSG   95 (99)
T ss_dssp             SSCSSCEECCEEETTCCS
T ss_pred             CCCCcceeEEEeecCCCC
Confidence            8988    6665555443

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=2.6e-06  Score=64.66  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=63.3

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||+ +  .+.....++...||.|.|.+++....++...+.  ..|+|+
T Consensus        11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~-v--~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~   81 (101)
T 2fc9_A           11 WSGESKTLVL---SNLSYSATEETLQEVFEK-ATF-I--KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK--REIEGR   81 (101)
T ss_dssp             CSCCCSEEEE---ESCCTTCCHHHHHHHCSS-CSE-E--ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSS--EEETTE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCE-E--EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCC--CEeCCe
Confidence            4567899999   6888  999999999997 998 4  332223678889999999999998887763222  468899


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|+++
T Consensus        82 ~l~v~~a~~~~~   93 (101)
T 2fc9_A           82 AIRLELQGPRGS   93 (101)
T ss_dssp             EEEEEECSSCCC
T ss_pred             EEEEEEcCCCCC
Confidence            999988877654

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.29  E-value=2.3e-06  Score=67.62  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=62.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      +++.+|+||   +|.|  ++++||+++|.+ ||.  |+.|.+-.  .++...||.|.|.+.+..+.++..-+.  ..|+|
T Consensus         4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g   75 (116)
T 2fy1_A            4 ADHPGKLFI---GGLNRETNEKMLKAVFGK-HGP--ISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG--KSLHG   75 (116)
T ss_dssp             TCSCCEEEE---ECCTTTCCHHHHHHHHHT-SSC--CSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS--CBCSS
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence            456789998   7888  999999999996 998  66666654  677889999999999998777642111  14799


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-++...|+.
T Consensus        76 ~~l~V~~a~~~~   87 (116)
T 2fy1_A           76 KAIKVEQAKKPS   87 (116)
T ss_dssp             SBCEEEECCCSS
T ss_pred             EEEEEEECCCCC
Confidence            999887766554

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.28  E-value=3.5e-06  Score=65.01  Aligned_cols=75  Identities=21%  Similarity=0.212  Sum_probs=59.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQF  265 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~kf  265 (283)
                      .-+..+|||   ++.|  +|++||+++|.+ ||+  |++|.+-.   +++..+||+|.|.+++.....+   +|.     
T Consensus        16 ~~~gt~lfV---~nLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-----   84 (99)
T 4fxv_A           16 YFQGTNLIV---NYLPQNMTQDELRSLFSS-IGE--VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-----   84 (99)
T ss_dssp             CCCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred             cCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-----
Confidence            334568888   8888  999999999986 998  66666543   6788899999999998877665   453     


Q ss_pred             EEcCceeEEEeccc
Q 048589          266 NIHGKDVRVRRFVP  279 (283)
Q Consensus       266 ~Ingk~iWaRky~p  279 (283)
                      .|+|+.+-++...|
T Consensus        85 ~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           85 RLQSKTIKVSYARP   98 (99)
T ss_dssp             EETTEECEEEECCB
T ss_pred             EECCEEEEEEEeeC
Confidence            58999998876655

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.27  E-value=4.2e-06  Score=68.20  Aligned_cols=82  Identities=17%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .....+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++..+||.|.|.+.+.....+..-+.  ..|
T Consensus        66 ~~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~--v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~  137 (158)
T 2kn4_A           66 DVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR--VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVL  137 (158)
T ss_dssp             CCCBCCEEEE---ESCCTTCCHHHHHHHHHH-HSC--EEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT--EES
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence            3456789988   6888  999999999975 998  66776654   688899999999999998887753221  258


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|+++
T Consensus       138 ~g~~l~v~~a~~~~~  152 (158)
T 2kn4_A          138 DGRELRVQMARYGRP  152 (158)
T ss_dssp             SSSEEEEEEECCSSC
T ss_pred             CCeEEEEEECCCCCC
Confidence            999998888776654

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=4.5e-06  Score=62.21  Aligned_cols=76  Identities=16%  Similarity=0.288  Sum_probs=59.6

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   +++...||.|.|.+.+....++...+.  ..
T Consensus        11 ~~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~   82 (94)
T 2e5h_A           11 GLAPSKSTVYV---SNLPFSLTNNDLYRIFSK-YGK--VVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN--KQ   82 (94)
T ss_dssp             SCCCCTTSEEE---ESCCTTSCHHHHHHHTTT-TSC--EEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT--EE
T ss_pred             CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC--Ce
Confidence            34667899999   6888  999999999986 998  77777754   577889999999999998877752221  36


Q ss_pred             EcCceeEEE
Q 048589          267 IHGKDVRVR  275 (283)
Q Consensus       267 Ingk~iWaR  275 (283)
                      |+|+.+-++
T Consensus        83 ~~g~~l~v~   91 (94)
T 2e5h_A           83 LFGRVIKAS   91 (94)
T ss_dssp             ETTEEEEEE
T ss_pred             eCCcEEEEE
Confidence            789888654

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.27  E-value=2.2e-06  Score=62.36  Aligned_cols=76  Identities=12%  Similarity=0.100  Sum_probs=58.7

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      |+||   +|.|  ++++||+++|.+ ||+  |+.+.+- +  +++...||.|.|.+.+....++..-+..  .++|+.+-
T Consensus         3 ~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~   74 (83)
T 3md1_A            3 NLFV---GDLNVNVDDETLRNAFKD-FPS--YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLR   74 (83)
T ss_dssp             EEEE---ECCCTTCCHHHHHHHHTT-STT--EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECE
T ss_pred             EEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC--eeCCcEEE
Confidence            5555   7888  999999999986 998  5566554 3  6778899999999999988776521111  47999999


Q ss_pred             EEecccCCC
Q 048589          274 VRRFVPKRA  282 (283)
Q Consensus       274 aRky~pk~~  282 (283)
                      ++...||+.
T Consensus        75 v~~a~~~~~   83 (83)
T 3md1_A           75 INWAAKLEH   83 (83)
T ss_dssp             EEECCCCCC
T ss_pred             EEecCcCCC
Confidence            998888753

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.27  E-value=2e-06  Score=70.99  Aligned_cols=80  Identities=18%  Similarity=0.301  Sum_probs=63.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+++.|++||   +|.|  ++++||+++|.+ ||+  |+.|.+- +  ++...+||.|.|.+++.....|....   ..+
T Consensus         9 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~---~~~   79 (196)
T 1l3k_A            9 EPEQLRKLFI---GGLSFETTDESLRSHFEQ-WGT--LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP---HKV   79 (196)
T ss_dssp             CCGGGGEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS---CEE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC---CEE
Confidence            4667899999   7888  999999999996 998  5555543 3  57778999999999999999987632   468


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+.++...++.
T Consensus        80 ~g~~l~v~~~~~~~   93 (196)
T 1l3k_A           80 DGRVVEPKRAVSRE   93 (196)
T ss_dssp             TTEECEEEECCC--
T ss_pred             CCEEeeeecccCcc
Confidence            99999888776553

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=3.2e-06  Score=63.02  Aligned_cols=77  Identities=19%  Similarity=0.288  Sum_probs=61.7

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+++.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.|.     ..||.|.|.+.+....++...+.  ..++|+
T Consensus         4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g--~~~~g~   70 (90)
T 2dnq_A            4 GSSGMVKLFI---GNLPREATEQEIRSLFEQ-YGK--VLECDII-----KNYGFVHIEDKTAAEDAIRNLHH--YKLHGV   70 (90)
T ss_dssp             CSSCCEEEEE---ESCCSSCCHHHHHHHHHT-SSC--EEEEEEE-----TTEEEEEESSHHHHHHHHHHHTT--CBCSSC
T ss_pred             CCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEE-----CCEEEEEECCHHHHHHHHHHhcC--CccCCc
Confidence            4667899998   6888  999999999996 998  7888885     46999999999997776642111  248999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|++.
T Consensus        71 ~l~v~~a~~~~~   82 (90)
T 2dnq_A           71 NINVEASKNKSK   82 (90)
T ss_dssp             BCEEECSSCCCC
T ss_pred             EEEEEECCCCCC
Confidence            999988887764

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.26  E-value=5.4e-06  Score=63.25  Aligned_cols=83  Identities=11%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhC---CCCee
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILG---ENELM  263 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~---g~~~~  263 (283)
                      ..+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|-.   +++...||+|.|.+.+....++.   |... 
T Consensus         8 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-   80 (106)
T 2dgp_A            8 MKDHDAIKLFI---GQIPRNLDEKDLKPLFEE-FGK--IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT-   80 (106)
T ss_dssp             CCCTTCEEEEE---ESCCTTCCHHHHHHHHHH-HSC--CCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC-
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc-
Confidence            34667799988   6888  999999999997 998  66666654   57788999999999988776654   5431 


Q ss_pred             eEEEcCceeEEEecccCCC
Q 048589          264 QFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       264 kf~Ingk~iWaRky~pk~~  282 (283)
                       +..+|+.+-++...|++.
T Consensus        81 -~~~~g~~l~v~~a~~~~~   98 (106)
T 2dgp_A           81 -LPGMNRPIQVKPADSESR   98 (106)
T ss_dssp             -CTTCSSCCEEEECCCCSC
T ss_pred             -cCCCCceEEEEECCcccc
Confidence             111778888887776653

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.25  E-value=8.1e-06  Score=62.15  Aligned_cols=77  Identities=13%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLIL---GENELMQFN  266 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf~  266 (283)
                      +++.+++||   +|.|  ++++||+++|.+ ||.  |+.|.|..  .++...||.|.|.+.+....++   +|..     
T Consensus        12 ~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-----   80 (105)
T 2dnh_A           12 GGRDRKLFV---GMLNKQQSEEDVLRLFQP-FGV--IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ-----   80 (105)
T ss_dssp             CCCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC-----
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc-----
Confidence            456799998   6887  999999999996 998  67777654  5666889999999999877765   4543     


Q ss_pred             EcC---ceeEEEecccCC
Q 048589          267 IHG---KDVRVRRFVPKR  281 (283)
Q Consensus       267 Ing---k~iWaRky~pk~  281 (283)
                      ++|   +.+-++...|++
T Consensus        81 ~~gg~~~~l~V~~a~~~~   98 (105)
T 2dnh_A           81 TMPGASSSLVVKFADTDK   98 (105)
T ss_dssp             CCTTCSSCCEEEESCSSC
T ss_pred             cCCCCCccEEEEECccCc
Confidence            566   888777776654

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.25  E-value=4.2e-06  Score=65.72  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+.||+||   +|.|  ++++||+++|.+ ||+  |+.|.|..   .++...||.|.|.+.+.....+. .+.  ..|+|
T Consensus        34 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g--~~~~g  104 (124)
T 2jwn_A           34 IDKRSVYV---GNVDYGSTAQDLEAHFSS-CGS--INRITILCDKFSGHPKGYAYIEFAERNSVDAAVA-MDE--TVFRG  104 (124)
T ss_dssp             HHHTEEEE---EEECTTCCHHHHHHHHHT-TSC--EEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT-TTT--CEETT
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh-cCC--CeECC
Confidence            45789998   6777  999999999996 998  66666643   68889999999999999888883 222  25899


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-++...+.+
T Consensus       105 ~~l~V~~a~~~~  116 (124)
T 2jwn_A          105 RTIKVLPKRTNM  116 (124)
T ss_dssp             EECEEEESSCCC
T ss_pred             eEEEEEECCCCC
Confidence            999777655544

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=9e-06  Score=60.52  Aligned_cols=77  Identities=19%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.+.|-+     .||.|.|.+.+..+..+...+.  ..++|+
T Consensus         5 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g--~~~~g~   71 (90)
T 2dnp_A            5 SSGNTWKIFV---GNVSAACTSQELRSLFER-RGR--VIECDVVK-----DYAFVHMEKEADAKAAIAQLNG--KEVKGK   71 (90)
T ss_dssp             SSCCSCCEEE---ESCCTTCCHHHHHHHHHH-HSC--EEEEEECS-----SCEEEEESCHHHHHHHHHHHTT--CEETTE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHc-CCC--EEEEEEEC-----CEEEEEECCHHHHHHHHHHhCC--CEECCc
Confidence            4567899998   7887  999999999997 998  78888853     2999999999988777652111  258999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|+++
T Consensus        72 ~l~v~~a~~~~~   83 (90)
T 2dnp_A           72 RINVELSTKGQK   83 (90)
T ss_dssp             ECEEEESCCCCC
T ss_pred             EEEEEECCCCCC
Confidence            998888877653

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.25  E-value=2.4e-06  Score=61.14  Aligned_cols=65  Identities=15%  Similarity=0.300  Sum_probs=53.5

Q ss_pred             CCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589          206 KGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       206 ~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk  276 (283)
                      +|.|  ++++||+++|.+ ||+  |+.+.|-.   +++...||.|.|.+++....++....   ..|+|+.+-++.
T Consensus         5 ~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~---~~~~g~~l~v~~   74 (75)
T 1iqt_A            5 GGLSPDTPEEKIREYFGG-FGE--VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY---HNVGLSKCEIKV   74 (75)
T ss_dssp             SCCCSSCCHHHHHHHHHH-HSC--CSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS---CCBTTBCCCEEE
T ss_pred             eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC---CeECCEEEEEEE
Confidence            7888  999999999997 998  67777754   57888999999999999999988422   358999886654

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.24  E-value=2.2e-06  Score=69.70  Aligned_cols=82  Identities=17%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+++.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.+-.   +++...||.|.|.+.+....++..-+..  .|
T Consensus        43 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~--~i  114 (135)
T 2lea_A           43 DVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR--VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VL  114 (135)
T ss_dssp             SGGGCCCEEE---ECCCSSCHHHHHHHHHGG-GSC--CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC--CS
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EE
Confidence            3556789998   6888  999999999986 998  66666643   6788899999999999988888643222  38


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|+++
T Consensus       115 ~g~~l~V~~a~~~~~  129 (135)
T 2lea_A          115 DGRELRVQMARYGRP  129 (135)
T ss_dssp             SSSCCEEEECCCCCC
T ss_pred             CCEEEEEEECCCCCC
Confidence            999998887776654

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.24  E-value=5.2e-06  Score=63.98  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=62.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .+++.+++||   +|.|  ++++||++||.+ ||. ..+.|.|-.  .++...||+|.|.+++.....|.. +  .-.|+
T Consensus        11 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~--~~~~~   82 (104)
T 1wg5_A           11 DTANDGFVRL---RGLPFGCSKEEIVQFFSG-LEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-H--KERIG   82 (104)
T ss_dssp             SCSCCCEEEE---ESCCTTCCHHHHHHHTTT-CCE-EEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-T--TCCSS
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-cceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C--cchhC
Confidence            3556788887   8888  999999999996 998 544476543  788899999999999999998875 2  23589


Q ss_pred             CceeEEEecccC
Q 048589          269 GKDVRVRRFVPK  280 (283)
Q Consensus       269 gk~iWaRky~pk  280 (283)
                      |+.+-+.+-.++
T Consensus        83 gr~i~v~~~~~~   94 (104)
T 1wg5_A           83 HRYIEIFKSSRA   94 (104)
T ss_dssp             SSCCEEEEECTT
T ss_pred             CcEEEEEECCHH
Confidence            998877665544

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.24  E-value=5.1e-06  Score=63.37  Aligned_cols=81  Identities=9%  Similarity=0.129  Sum_probs=63.6

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..++..+++||   +|.|  ++++||+++|.+ ||   |+.|.|-.   +++...||.|.|.+++....+| ..+  ...
T Consensus        10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~--g~~   79 (103)
T 2dng_A           10 LPTEPPYTAYV---GNLPFNTVQGDIDAIFKD-LS---IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD--GAL   79 (103)
T ss_dssp             CCSSSCEEEEE---ESCCTTCCHHHHHHHTTT-SC---EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT--TCE
T ss_pred             CCCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CC---ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC--CCe
Confidence            44567799988   6888  999999999997 64   55665543   5778899999999999988888 322  246


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      |+|+.+-++...|++.
T Consensus        80 ~~g~~l~V~~a~~~~~   95 (103)
T 2dng_A           80 LGDRSLRVDIAEGRKQ   95 (103)
T ss_dssp             ETTEECEEEECCCCCC
T ss_pred             ECCeEEEEEEecCCCC
Confidence            8999998888777654

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.24  E-value=1.1e-05  Score=63.91  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=61.4

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   .++...||.|.|.+++....++..-+.  ..
T Consensus        58 ~~~~~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~  129 (140)
T 2ku7_A           58 GSATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD--ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SE  129 (140)
T ss_dssp             SSCSSCCEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE--EE
T ss_pred             CCCCCCcEEEE---EeCCCCCCHHHHHHHHHh-cCC--EEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CE
Confidence            44567899998   7888  999999999986 999  77777754   578899999999999998888754332  36


Q ss_pred             EcCceeEEE
Q 048589          267 IHGKDVRVR  275 (283)
Q Consensus       267 Ingk~iWaR  275 (283)
                      |+|+.+-++
T Consensus       130 ~~g~~l~v~  138 (140)
T 2ku7_A          130 LFGRTIRVN  138 (140)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEE
Confidence            889988665

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.23  E-value=8e-06  Score=63.13  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee-------EEEeec---CCCCCceEEEEecChHHHHHHhCCCC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE-------DIKMGN---CRDQSLYARVIVRSPAFITLILGENE  261 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve-------~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~  261 (283)
                      ..+.+|+||   +|.|  ++++||+++|.+ ||. ...       .|.+..   +++...||.|.|.+.+....++..-+
T Consensus        12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~   86 (113)
T 2cpe_A           12 DSDNSAIYV---QGLNDSVTLDDLADFFKQ-CGV-VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD   86 (113)
T ss_dssp             CCCCCEEEE---ECCCTTCCHHHHHHHHTT-TSC-BCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCC-EeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence            456789998   7888  999999999997 998 441       344432   67888999999999999887765211


Q ss_pred             eeeEEEcCceeEEEecccCCC
Q 048589          262 LMQFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       262 ~~kf~Ingk~iWaRky~pk~~  282 (283)
                      .  ..|+|+.+-++...|+..
T Consensus        87 g--~~~~g~~l~V~~a~~~~~  105 (113)
T 2cpe_A           87 G--KDFQGSKLKVSLARKKPP  105 (113)
T ss_dssp             T--CEETTEECEEECSSCCCC
T ss_pred             C--CccCCCEEEEEECCCCCC
Confidence            1  158999999888877654

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.23  E-value=2.9e-06  Score=66.14  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=59.5

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+++.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.|..   +++...||.|.|.+.+.....+..-+.  ..
T Consensus        35 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~  106 (118)
T 2khc_A           35 IEGPEGCNLFI---YHLPQEFTDTDLASTFLP-FGN--VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG--FQ  106 (118)
T ss_dssp             CCCCCSEEEEE---ECSCTTCCHHHHHHHTTT-SCE--EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC--CE
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC--CE
Confidence            34567799988   7888  999999999996 998  67777653   578899999999999998877763221  25


Q ss_pred             EcCceeEEE
Q 048589          267 IHGKDVRVR  275 (283)
Q Consensus       267 Ingk~iWaR  275 (283)
                      |+|+.+-++
T Consensus       107 ~~g~~l~V~  115 (118)
T 2khc_A          107 VGTKRLKVQ  115 (118)
T ss_dssp             ETTEECCEE
T ss_pred             ECCEEEEEE
Confidence            889887554

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.22  E-value=7.9e-06  Score=61.77  Aligned_cols=79  Identities=11%  Similarity=0.072  Sum_probs=62.5

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~  266 (283)
                      ..++..+++||   +|.|  ++++||+++|.+ ||. +...+..   ++...||.|.|.+.+.....+   +|.     .
T Consensus        14 ~~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~G~-v~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~-----~   80 (97)
T 2e5j_A           14 EGAPLAADVYV---GNLPRDARVSDLKRALRE-LGS-VPLRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGL-----R   80 (97)
T ss_dssp             SSSCCCCEEEE---ECCCTTCCHHHHHHHHHH-TTC-CCSEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTC-----C
T ss_pred             CCCCCCCEEEE---eCCCCcCcHHHHHHHHHh-cCC-EEEEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCC-----E
Confidence            34566789998   7887  999999999996 998 5333333   567889999999999877665   454     4


Q ss_pred             EcCceeEEEecccCCCC
Q 048589          267 IHGKDVRVRRFVPKRAS  283 (283)
Q Consensus       267 Ingk~iWaRky~pk~~~  283 (283)
                      |+|+.+-++...|++++
T Consensus        81 ~~g~~l~V~~a~~~~~~   97 (97)
T 2e5j_A           81 LGTDTLRVALARQQRDK   97 (97)
T ss_dssp             SSSSCCEEEECCCCCCC
T ss_pred             ECCcEEEEEEcCCCCCC
Confidence            89999999998888763

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.22  E-value=3e-06  Score=66.76  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=61.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHh---CCCCeee
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLIL---GENELMQ  264 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL---~g~~~~k  264 (283)
                      ...+.+|+||   +|.|  ++++||+++|.+ ||.  |+.|.|- +  ++....||.|.|.+.+....++   +|.    
T Consensus        18 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----   87 (126)
T 3ex7_B           18 RSVEGWILFV---TGVHEEATEEDIHDKFAE-YGE--IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ----   87 (126)
T ss_dssp             CCSSSEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC----
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC----
Confidence            3456789988   7887  999999999996 998  6677664 3  6777899999999999977766   453    


Q ss_pred             EEEcCceeEEEecccCC
Q 048589          265 FNIHGKDVRVRRFVPKR  281 (283)
Q Consensus       265 f~Ingk~iWaRky~pk~  281 (283)
                       .|+|+.+-+....|+.
T Consensus        88 -~~~g~~l~v~~a~~~~  103 (126)
T 3ex7_B           88 -DLMGQPISVDWCFVRG  103 (126)
T ss_dssp             -BSSSSBCEEEESEESS
T ss_pred             -eeCCeEEEEEEecCCC
Confidence             3799999887766654

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.22  E-value=2.7e-06  Score=63.57  Aligned_cols=76  Identities=16%  Similarity=0.332  Sum_probs=58.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .+++.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|..  .++...||.|.|.+++....++..-+.  ..++
T Consensus        12 ~~~~~~~l~v---~nlp~~~~~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   83 (95)
T 2ywk_A           12 QEEADRTVFV---GNLEARVREEILYELFLQ-AGP--LTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG--IRLY   83 (95)
T ss_dssp             CTTGGGEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT--CEET
T ss_pred             CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence            4567799998   6888  999999999986 998  77777754  466678999999999998877652111  1478


Q ss_pred             CceeEEEe
Q 048589          269 GKDVRVRR  276 (283)
Q Consensus       269 gk~iWaRk  276 (283)
                      |+.+-++.
T Consensus        84 g~~l~V~~   91 (95)
T 2ywk_A           84 GRPINVSG   91 (95)
T ss_dssp             TEECEEEC
T ss_pred             CCEEEEEE
Confidence            98886653

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.22  E-value=1.2e-06  Score=65.51  Aligned_cols=80  Identities=18%  Similarity=0.142  Sum_probs=61.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+++.+++||   +|.|  ++++||+++|.+ ||+ .|+.+.+.    ...||.|.|.+.+..+..+...+- +..++|+
T Consensus         4 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~   73 (93)
T 2cqh_A            4 GSSGMNKLYI---GNLSPAVTADDLRQLFGD-RKL-PLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSG-KVELHGK   73 (93)
T ss_dssp             CCCCCCCEEE---ECCCTTCCHHHHHHHHHH-TTC-CCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTT-TCEETTE
T ss_pred             CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCC-ceEEEEEc----CCCEEEEEECCHHHHHHHHHHccC-CeeECCE
Confidence            4567799998   7888  999999999987 998 77777773    357999999999887766542111 2368999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|++.
T Consensus        74 ~l~v~~a~~~~~   85 (93)
T 2cqh_A           74 IMEVDYSVSKKL   85 (93)
T ss_dssp             ECEEEECCCCCC
T ss_pred             EEEEEEccCccc
Confidence            998888877653

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=1.4e-06  Score=66.31  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      +...+++||   +|.|  ++++||+++|.+.||+  |+.|.+-.  .++...||+|.|.+.+.....+...+... .|+|
T Consensus         6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~~~G~--v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~~g   79 (104)
T 2dhg_A            6 SGPEYSLFV---GDLTPDVDDGMLYEFFVKVYPS--CRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV-GLGS   79 (104)
T ss_dssp             SSCCCCEEE---ECCCTTCCHHHHHHHHHHHCTT--EEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC-SSSS
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHHHhCCC--eEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc-ccCC
Confidence            455689988   7888  9999999999987998  66666644  67778999999999999887765211110 2789


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-++...|+.
T Consensus        80 ~~l~v~~a~~~~   91 (104)
T 2dhg_A           80 KPVRLSVAIPKA   91 (104)
T ss_dssp             SCCCCCBCCCCC
T ss_pred             EeEEEEEccCCC
Confidence            988777666554

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=6.6e-06  Score=63.55  Aligned_cols=77  Identities=12%  Similarity=0.019  Sum_probs=58.4

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+..+|+||   +|.|  ++++||+++|.+ ||.  |+.|.+-.  .++...||.|.|.+.+.....+..-+.  ..|+|
T Consensus        12 ~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~--i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g   83 (114)
T 2do0_A           12 GRLGSTVFV---ANLDYKVGWKKLKEVFSM-AGV--VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG--QLLFD   83 (114)
T ss_dssp             CCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CEeCC
Confidence            456789998   6888  999999999996 998  66666544  566678999999999887777542111  15789


Q ss_pred             ceeEEEecc
Q 048589          270 KDVRVRRFV  278 (283)
Q Consensus       270 k~iWaRky~  278 (283)
                      +.+-++...
T Consensus        84 ~~l~v~~a~   92 (114)
T 2do0_A           84 RPMHVKMDE   92 (114)
T ss_dssp             EECEEEECS
T ss_pred             CEEEEEEcc
Confidence            999777554

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=7.6e-06  Score=61.18  Aligned_cols=77  Identities=18%  Similarity=0.169  Sum_probs=60.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.+-+     .||.|.|.+.+.....+..-+.  ..|+|+
T Consensus         6 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g--~~~~g~   72 (92)
T 2dgt_A            6 SGKASTKLHV---GNISPTCTNQELRAKFEE-YGP--VIECDIVK-----DYAFVHMERAEDAVEAIRGLDN--TEFQGK   72 (92)
T ss_dssp             CCCSSEEEEE---ESCCSSCCHHHHHHHHHT-TSC--CCEEEECS-----SEEEEEESCHHHHHHHHHHHTT--EEETTE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEC-----CEEEEEECCHHHHHHHHHHhCC--CeeCCc
Confidence            4567789998   7888  999999999997 998  77777743     2999999999887777642111  258999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|++.
T Consensus        73 ~l~V~~a~~~~~   84 (92)
T 2dgt_A           73 RMHVQLSTSRLR   84 (92)
T ss_dssp             EEEEEESSCCCS
T ss_pred             EEEEEEccCCCC
Confidence            999998887754

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.20  E-value=2.8e-06  Score=65.95  Aligned_cols=77  Identities=21%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+.||+||   +|.|  ++++||+++|.+ ||.  |+.|.+-.   +++...||+|.|.+.+....++ ..+.  ..|+|
T Consensus        23 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g   93 (114)
T 2cq4_A           23 RDARTVFC---MQLAARIRPRDLEDFFSA-VGK--VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG--QRLLG   93 (114)
T ss_dssp             HHHTEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT--EEETT
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC--CEeCC
Confidence            45689988   7888  999999999986 998  66666653   5788899999999999988877 3222  36799


Q ss_pred             ceeEEEecccC
Q 048589          270 KDVRVRRFVPK  280 (283)
Q Consensus       270 k~iWaRky~pk  280 (283)
                      +.+-++...|+
T Consensus        94 ~~l~V~~a~~~  104 (114)
T 2cq4_A           94 VPIIVQASQAE  104 (114)
T ss_dssp             EEEEEEEHHHH
T ss_pred             eEEEEEecCCC
Confidence            99988876654

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.18  E-value=2.2e-06  Score=64.34  Aligned_cols=81  Identities=21%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ++..+++||   +|.|  ++++||+    ++|.+ ||+  |+.|.+-+.++...||.|.|.+.+.....+..-+.  ..+
T Consensus         5 ~~~~~~l~V---~nLp~~~~~~~l~~~l~~~f~~-~G~--i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~   76 (97)
T 1nu4_A            5 TRPNHTIYI---NNLNEKIKKDELKKSLHAIFSR-FGQ--ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPF   76 (97)
T ss_dssp             -CCCSEEEE---ESCCTTSCHHHHHHHHHHHHGG-GSC--EEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHHh-CCC--EEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC--CEE
Confidence            345689988   6877  9999999    99986 998  77787765556678999999999987776642111  257


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|++.
T Consensus        77 ~g~~l~v~~a~~~~~   91 (97)
T 1nu4_A           77 YDKPMRIQYAKTDSD   91 (97)
T ss_dssp             TTEECEEEECSSCCT
T ss_pred             CCcEEEEEEccCCCc
Confidence            999999988777653

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.18  E-value=3.1e-06  Score=67.62  Aligned_cols=80  Identities=13%  Similarity=0.161  Sum_probs=59.2

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+++.+++||   +|.|  ++|+||+++|.+ ||.  |..|.|-.   ...||+|.|.+++.....+.....-...|+||
T Consensus        12 ~~~~~~~LfV---~nLp~~vte~dL~~lF~~-fG~--V~~v~i~~---~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr   82 (105)
T 1sjq_A           12 SGVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK--VTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ   82 (105)
T ss_dssp             CCCCCCEEEE---CSCCTTSCHHHHHHHHHH-HCC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEc---CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence            3667789998   8988  999999999997 999  66666643   36899999999887665554211112378999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+.+..-.+|+
T Consensus        83 ~l~V~~A~~~~   93 (105)
T 1sjq_A           83 PIYIQFSNHKE   93 (105)
T ss_dssp             ECCBCCCSSSS
T ss_pred             EEEEEEcCCCC
Confidence            99776655554

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.18  E-value=1.3e-06  Score=66.41  Aligned_cols=81  Identities=12%  Similarity=0.117  Sum_probs=63.3

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||. ... ..|.+  .++...||+|.|.+.+.....+. .+  ...|+
T Consensus        13 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~--g~~~~   83 (101)
T 1fj7_A           13 ESTTPFNLFI---GNLNPNKSVAELKVAISE-LFA-KND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT--GLKVF   83 (101)
T ss_dssp             TCSCSEEEEE---ECCCTTSCHHHHHHHHHH-HHH-HHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG--GCCBT
T ss_pred             cCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC--CcEEC
Confidence            4556789988   7888  999999999997 997 555 44444  68889999999999998777764 22  23578


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|++.
T Consensus        84 g~~l~V~~a~~~~~   97 (101)
T 1fj7_A           84 GNEIKLEKPKGRDG   97 (101)
T ss_dssp             TBCCEEECCSCCCC
T ss_pred             CcEEEEEEcCCCCC
Confidence            99999988887764

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.18  E-value=2.2e-06  Score=67.40  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      +..+++||   +|.|  ++|+|++++|.+ ||.  |+.|.|-.   ...||+|.|.+++.....+...+.-+..|+||.+
T Consensus        13 ~p~~~l~V---~nLp~~~te~~L~~~F~~-fG~--V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l   83 (104)
T 1wex_A           13 SVSPVVHV---RGLCESVVEADLVEALEK-FGT--ICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA   83 (104)
T ss_dssp             CCCSEEEE---ESCCSSCCHHHHHHHHTT-TSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence            34589998   7888  999999999996 998  66777743   3689999999998877776532222356899999


Q ss_pred             EEEecccCC
Q 048589          273 RVRRFVPKR  281 (283)
Q Consensus       273 WaRky~pk~  281 (283)
                      .+....+++
T Consensus        84 ~V~~a~~~~   92 (104)
T 1wex_A           84 FFNYSTSKR   92 (104)
T ss_dssp             EEEECSSSS
T ss_pred             EEEEccCcc
Confidence            887766554

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=98.18  E-value=1.1e-06  Score=65.19  Aligned_cols=75  Identities=17%  Similarity=0.367  Sum_probs=54.8

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      ||+||   +|.|  ++++||+++|.+ ||+  |+++.+..   +++...||.|.|.+.+ ....+..-+..  .++|+.+
T Consensus         2 ~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l   72 (90)
T 2ki2_A            2 RNIYV---GNLVYSATSEQVKELFSQ-FGK--VFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTI   72 (90)
T ss_dssp             EEEEE---EEECTTSSHHHHTTTHHH-HTC--CSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSC
T ss_pred             cEEEE---CCCCCCCCHHHHHHHHHh-cCC--EEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEE
Confidence            67887   6777  999999999997 998  66666654   5788999999999999 66655432211  3789998


Q ss_pred             EEEecccCC
Q 048589          273 RVRRFVPKR  281 (283)
Q Consensus       273 WaRky~pk~  281 (283)
                      -++.-.|+.
T Consensus        73 ~V~~a~~~~   81 (90)
T 2ki2_A           73 RVTEANPKK   81 (90)
T ss_dssp             SEEEC----
T ss_pred             EEEEcCCCC
Confidence            777665543

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.17  E-value=2.2e-06  Score=65.10  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=60.9

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ++.||+||   +|.|  ++++||+++|.+ ||+  |+.+.+..   +++...||.|.|.+.+....++...+.  ..++|
T Consensus         6 ~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g   77 (104)
T 1p1t_A            6 RSLRSVFV---GNIPYEATEEQLKDIFSE-VGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG--REFSG   77 (104)
T ss_dssp             HHHSCEEE---ESCCTTSCHHHHHHHHHT-TSC--CSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS--BSCSS
T ss_pred             CCccEEEE---eCCCCcCCHHHHHHHHHh-cCC--eeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCC
Confidence            45689988   7888  999999999996 998  55665543   577789999999999998777642221  13699


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-++...|++
T Consensus        78 ~~l~v~~a~~~~   89 (104)
T 1p1t_A           78 RALRVDNAASEK   89 (104)
T ss_dssp             SCBEEEETTCTT
T ss_pred             cEEEEEeCCCcc
Confidence            999888777654

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.17  E-value=4.4e-06  Score=63.31  Aligned_cols=77  Identities=18%  Similarity=0.353  Sum_probs=62.0

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~  266 (283)
                      ....+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|.+   ...||.|.|.+.+....++   +|..     
T Consensus        10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~-----   75 (99)
T 2cpj_A           10 KTFTQRSRLFV---GNLPPDITEEEMRKLFEK-YGK--AGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMP-----   75 (99)
T ss_dssp             CCCCCTTEEEE---ESCCTTCCHHHHHHHTST-TCC--CSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCC-----
T ss_pred             CcCCCCCEEEE---eCCCCCCCHHHHHHHHhh-cCC--eEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCE-----
Confidence            34567799999   7887  999999999996 998  77787743   3689999999999877766   4533     


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      |+|+.+-++...|++.
T Consensus        76 ~~g~~l~v~~a~~~~~   91 (99)
T 2cpj_A           76 LRGKQLRVRFACHSAS   91 (99)
T ss_dssp             BTTBCCEEEESSCCSC
T ss_pred             eCCceEEEEEcCCCCC
Confidence            7999998888877654

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.17  E-value=3.5e-06  Score=63.47  Aligned_cols=81  Identities=14%  Similarity=0.043  Sum_probs=60.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .++..+++||   +|.|  ++++||+++|.+ ||. +.+...+.+  .++...||.|.|.+++....++...+.  ..|+
T Consensus        11 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~-v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~   83 (98)
T 2cqp_A           11 GKPGPTIIKV---QNMPFTVSIDEILDFFYG-YQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIG   83 (98)
T ss_dssp             CCCSSEEEEE---ESCCTTCCHHHHHHHTTT-SCC-CTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT--CEET
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC-ccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence            4556688988   7888  999999999986 998 443333333  677889999999999998887753221  1689


Q ss_pred             CceeEEEecccC
Q 048589          269 GKDVRVRRFVPK  280 (283)
Q Consensus       269 gk~iWaRky~pk  280 (283)
                      |+.+-++.-.++
T Consensus        84 g~~l~V~~a~~~   95 (98)
T 2cqp_A           84 SRKVKLVLGSGP   95 (98)
T ss_dssp             TEECEEEESSCS
T ss_pred             CeEEEEEEcCCC
Confidence            999988775543

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.16  E-value=3.4e-06  Score=66.05  Aligned_cols=79  Identities=14%  Similarity=0.160  Sum_probs=60.6

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      +..+++||   ++.|  ++|+|++++|.+ ||.  |+.|.|-.   ...||+|.|.+++.....+...+.-...|+||.+
T Consensus        13 ~p~~~l~V---~nLp~~~te~~L~~~F~~-fG~--v~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l   83 (101)
T 2cq1_A           13 APSRVLHI---RKLPGEVTETEVIALGLP-FGK--VTNILMLK---GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI   83 (101)
T ss_dssp             SCCSEEEE---ESCCTTCCHHHHHHTTTT-TSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence            44689988   7888  999999999996 998  66676643   2789999999998877776632212357999999


Q ss_pred             EEEecccCCC
Q 048589          273 RVRRFVPKRA  282 (283)
Q Consensus       273 WaRky~pk~~  282 (283)
                      .+....++..
T Consensus        84 ~V~~a~~~~~   93 (101)
T 2cq1_A           84 YIQYSNHKEL   93 (101)
T ss_dssp             EEEECSCSSC
T ss_pred             EEEEcCcccC
Confidence            8887766643

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=98.15  E-value=2.5e-06  Score=65.24  Aligned_cols=80  Identities=13%  Similarity=0.129  Sum_probs=59.9

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLILGENELMQF  265 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~vL~g~~~~kf  265 (283)
                      ..+...||+||   +|.|  ++++||+++|.+ ||   |+.|.|-.    +++..+||.|.|.+.+.....+ ..+.  .
T Consensus        14 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g--~   83 (100)
T 2j76_E           14 LPKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--E   83 (100)
T ss_dssp             ------CEEEE---SCCSSCCSSSHHHHHSCS-SC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT--C
T ss_pred             CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC--C
Confidence            45667899998   8888  999999999996 87   77777753    4777899999999999988877 3222  2


Q ss_pred             EEcCceeEEEecccCC
Q 048589          266 NIHGKDVRVRRFVPKR  281 (283)
Q Consensus       266 ~Ingk~iWaRky~pk~  281 (283)
                      .|+|+.+-++...|++
T Consensus        84 ~~~g~~l~V~~a~~~~   99 (100)
T 2j76_E           84 SLGNRRIRVDVADQAQ   99 (100)
T ss_dssp             CBTTBCCCCEECCCSC
T ss_pred             EECCeEEEEEeccCCC
Confidence            4899999888777765

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.15  E-value=8.1e-06  Score=64.37  Aligned_cols=82  Identities=12%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..++..+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..  .++...||.|.|.+.+.....+..-+.  ..|
T Consensus        30 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~  101 (124)
T 2kt5_A           30 EGVETGAKLLV---SNLDFGVSDADIQELFAE-FGT--LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG--VPL  101 (124)
T ss_dssp             CCCSSCEEEEE---ESCCSSCCHHHHHHHHHT-TSC--CSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT--EES
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence            34566789988   7888  999999999997 998  66776654  677889999999999998877652221  268


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+-++.-.|+.
T Consensus       102 ~g~~l~V~~a~~~~  115 (124)
T 2kt5_A          102 DGRPMDIQLVASQI  115 (124)
T ss_dssp             SSCEEEEEEECCTT
T ss_pred             CCcEEEEEEeCCCC
Confidence            99999777655543

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.15  E-value=4.5e-06  Score=63.03  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc--C
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH--G  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In--g  269 (283)
                      +...+++||   +|.|  ++++||+++|.+ ||+  |+.|.|..   ...||.|.|.+.+....++..-+.  ..|+  |
T Consensus        14 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~~~~---~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~g   82 (97)
T 1why_A           14 ANPTTRLWV---GGLGPNTSLAALAREFDR-FGS--IRTIDHVK---GDSFAYIQYESLDAAQAACAKMRG--FPLGGPD   82 (97)
T ss_dssp             CCCCSCEEE---ECCCSSCCHHHHHHHHHT-TSC--EEEEEECS---SSCCEEEEESSHHHHHHHHHHHTT--CBCSSSS
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEeC---CCCEEEEEECCHHHHHHHHHHHCC--CEeCCCC
Confidence            445689998   6777  999999999986 998  78888854   267999999999987776652111  1468  9


Q ss_pred             ceeEEEecccCCC
Q 048589          270 KDVRVRRFVPKRA  282 (283)
Q Consensus       270 k~iWaRky~pk~~  282 (283)
                      +.+-++...|++.
T Consensus        83 ~~l~V~~a~~~~~   95 (97)
T 1why_A           83 RRLRVDFAKSGPS   95 (97)
T ss_dssp             CBCEEEECCCCCC
T ss_pred             cEEEEEECCCCCC
Confidence            9999998888865

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.15  E-value=1.4e-05  Score=60.98  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      ....+++||   +|.|  ++++||+++|.+ ||+  |+.|.+-+     .||.|.|.+++.....+..-+.  ..|+|+.
T Consensus         8 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--i~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g--~~~~g~~   74 (103)
T 2dgu_A            8 MAKVKVLFV---RNLANTVTEEILEKAFSQ-FGK--LERVKKLK-----DYAFIHFDERDGAVKAMEEMNG--KDLEGEN   74 (103)
T ss_dssp             CCCCCCEEE---ECCCTTCCHHHHHHHHHH-HSC--EEEEEECS-----SCEEEEESSHHHHHHHHHHHTT--EEETTEE
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEC-----CEEEEEeCCHHHHHHHHHHHCC--CccCCCE
Confidence            455689998   7887  999999999997 998  77777743     3999999999998777653111  2589999


Q ss_pred             eEEEecccCCC
Q 048589          272 VRVRRFVPKRA  282 (283)
Q Consensus       272 iWaRky~pk~~  282 (283)
                      +-++...|++.
T Consensus        75 l~v~~a~~~~~   85 (103)
T 2dgu_A           75 IEIVFAKPPDQ   85 (103)
T ss_dssp             EEEEECCCCCC
T ss_pred             EEEEEcCCCcc
Confidence            99988877653

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.15  E-value=8.7e-06  Score=66.63  Aligned_cols=82  Identities=16%  Similarity=0.153  Sum_probs=62.0

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ...++.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.|-.   +++...||+|.|.+++....++..-+.  ..
T Consensus        34 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~  105 (156)
T 1h2v_Z           34 KLLKKSCTLYV---GNLSFYTTEEQIYELFSK-SGD--IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TR  105 (156)
T ss_dssp             TTTTTCCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SE
T ss_pred             ccCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CE
Confidence            34556789998   6888  999999999986 998  77777754   567788999999999998887763221  25


Q ss_pred             EcCceeEEEecccCC
Q 048589          267 IHGKDVRVRRFVPKR  281 (283)
Q Consensus       267 Ingk~iWaRky~pk~  281 (283)
                      |+|+.+-++...|++
T Consensus       106 ~~g~~l~V~~a~~~~  120 (156)
T 1h2v_Z          106 LDDRIIRTDWDAGFK  120 (156)
T ss_dssp             ETTEECEEEEESCCC
T ss_pred             ECCeEEEEEECCCCC
Confidence            799998665555443

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.15  E-value=8.8e-06  Score=64.12  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec--CCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN--CRDQSLYARVIVRSPAFITLIL---GENELMQF  265 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf  265 (283)
                      +...||+||   ++.|  +++++++++|.+ ||+  |++|.+ .+  +++...||+|.|.+.+..+..+   +|.     
T Consensus         3 ~~p~~~lfV---~nL~~~~te~~L~~~F~~-~G~--i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-----   71 (110)
T 3s8s_A            3 QIPLKEVTF---ARLNDNVRETFLKDMCRK-YGE--VEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-----   71 (110)
T ss_dssp             CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred             CCCCcEEEE---ECCCCCCCHHHHHHHHHh-cCC--eeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-----
Confidence            345689988   7777  999999999985 998  566554 34  6888999999999999977765   554     


Q ss_pred             EEcCceeEEEeccc
Q 048589          266 NIHGKDVRVRRFVP  279 (283)
Q Consensus       266 ~Ingk~iWaRky~p  279 (283)
                      .++|+.+-+..-.+
T Consensus        72 ~~~gr~i~V~~a~~   85 (110)
T 3s8s_A           72 SVMGNIIHAQLDIK   85 (110)
T ss_dssp             EETTEECEEEECST
T ss_pred             EECCeEEEEEECCC
Confidence            58999998765433

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.14  E-value=3.6e-06  Score=63.18  Aligned_cols=80  Identities=26%  Similarity=0.190  Sum_probs=64.1

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..++.+|+||   +|.|  ++++||+++|.+ ||+  |..+  ...+....||.|.|.+++.....+..-+.  ..|+|+
T Consensus        12 ~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~g~--v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~   81 (96)
T 1fjc_A           12 KVRAARTLLA---KNLSFNITEDELKEVFED-ALE--IRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGR   81 (96)
T ss_dssp             TTTGGGEEEE---ESCCSSCCHHHHHHHHCS-EEE--ECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTE--EEETTE
T ss_pred             cCCCCCEEEE---eCCCCCCCHHHHHHHHhh-CCc--EEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCe
Confidence            3456789998   7888  999999999997 897  4444  33688889999999999998888764332  468999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+-++...|+..
T Consensus        82 ~l~v~~a~~~~~   93 (96)
T 1fjc_A           82 SVSLYYTGEKGG   93 (96)
T ss_dssp             EEEEEECSSSCC
T ss_pred             EEEEEEcCCCCC
Confidence            999988877764

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.13  E-value=2.7e-05  Score=60.14  Aligned_cols=77  Identities=13%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC--
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG--  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing--  269 (283)
                      +...+++||   +|.|  ++++||+++|.+ ||+  |+.+.+...    .||+|.|.+++.....+...+.  ..|+|  
T Consensus        12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~   79 (108)
T 1x4c_A           12 RRSENRVVV---SGLPPSGSWQDLKDHMRE-AGD--VCYADVYRD----GTGVVEFVRKEDMTYAVRKLDN--TKFRSHE   79 (108)
T ss_dssp             CSCCCEEEE---ESCCSSCCHHHHHHHHGG-GSC--EEEEEEETT----TEEEEEESSHHHHHHHHHHSSS--EEEECTT
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEecC----CEEEEEECCHHHHHHHHHHHCc--CCccCCc
Confidence            445678888   7888  999999999996 998  777777442    8999999999887777653222  25788  


Q ss_pred             ---ceeEEEecccCCC
Q 048589          270 ---KDVRVRRFVPKRA  282 (283)
Q Consensus       270 ---k~iWaRky~pk~~  282 (283)
                         +.+-++...|++.
T Consensus        80 ~~~~~i~V~~a~~~~~   95 (108)
T 1x4c_A           80 GETAYIRVKVDGPRSP   95 (108)
T ss_dssp             SCEEEEEEEESSCCSC
T ss_pred             CcceEEEEEeCCCCCC
Confidence               9999998888765

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.13  E-value=5.3e-06  Score=59.49  Aligned_cols=65  Identities=17%  Similarity=0.275  Sum_probs=52.3

Q ss_pred             CCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589          206 KGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       206 ~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk  276 (283)
                      +|.|  ++++|++++|.+ ||+  |+.+.+..   +++...||.|.|.+++..+.++. .+  ...|+|+.+-++.
T Consensus         5 ~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~--~~~~~g~~l~v~~   74 (75)
T 2mss_A            5 GGLSVNTTVEDVKHYFEQ-FGK--VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH--FHEINNKMVECKK   74 (75)
T ss_dssp             ECCCSSCCHHHHHHHHHT-TSC--CSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS--CCCSSSCCCEEEC
T ss_pred             ecCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC--CCEECCEEEEEEe
Confidence            7888  999999999996 998  66776654   57788999999999999999886 22  2357898887654

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.13  E-value=7.8e-06  Score=67.46  Aligned_cols=79  Identities=20%  Similarity=0.356  Sum_probs=62.0

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ...+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..   .+....||.|-|.+.+....+|...   ...++|
T Consensus       102 ~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~---~~~~~G  172 (196)
T 1l3k_A          102 LTVKKIFV---GGIKEDTEEHHLRDYFEQ-YGK--IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK---YHTVNG  172 (196)
T ss_dssp             -CCSEEEE---ECCTTTCCHHHHHHHHTT-TSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS---CCEETT
T ss_pred             CCcceEEE---eCCCCCCCHHHHHHHHhc-CCC--eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC---CcEECC
Confidence            45589988   7888  999999999985 998  66666543   5778899999999999988888642   348999


Q ss_pred             ceeEEEecccCCC
Q 048589          270 KDVRVRRFVPKRA  282 (283)
Q Consensus       270 k~iWaRky~pk~~  282 (283)
                      +.+-++...||..
T Consensus       173 ~~i~v~~a~~k~~  185 (196)
T 1l3k_A          173 HNCEVRKALSKQE  185 (196)
T ss_dssp             EECEEEECC----
T ss_pred             EEEEEEecCChhH
Confidence            9999999988864

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.13  E-value=8.9e-06  Score=64.47  Aligned_cols=79  Identities=14%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .+..|++||   ++.|  +|++|+++.|.+ ||.  |.+|.|-+   ...||+|.|.+++.....+..-+...+.|+||.
T Consensus        18 ~~ps~~l~V---~NLp~~~te~~L~~lF~~-fG~--V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~   88 (100)
T 3r27_A           18 TPASPVVHI---RGLIDGVVEADLVEALQE-FGP--ISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP   88 (100)
T ss_dssp             CCCCSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHhc-cCC--EEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence            344689988   8888  999999999997 998  77777743   457999999999987777764444457899999


Q ss_pred             eEEEecccCC
Q 048589          272 VRVRRFVPKR  281 (283)
Q Consensus       272 iWaRky~pk~  281 (283)
                      +.+.--.+|.
T Consensus        89 i~V~~S~~k~   98 (100)
T 3r27_A           89 AFVNYSTSQK   98 (100)
T ss_dssp             EEEEECSCSC
T ss_pred             EEEEeccccc
Confidence            9887766654

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.13  E-value=2.4e-05  Score=59.21  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ......+++||   +|.|  ++++||+++|.+ ||.+-|++|.+.     ..||.|.|.+.+.....+...+.  ..|+|
T Consensus        10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g--~~~~g   78 (99)
T 2cpd_A           10 DTMSSVKILYV---RNLMLSTSEEMIEKEFNN-IKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNG--KVLDG   78 (99)
T ss_dssp             SCSSCCCEEEE---ESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSS--EEETT
T ss_pred             cccCCcCEEEE---eCCCCCCCHHHHHHHHHh-cCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCC--CEeCC
Confidence            34556789998   7887  999999999997 943237788773     35999999999987777652221  26799


Q ss_pred             ceeEEEecccCCC
Q 048589          270 KDVRVRRFVPKRA  282 (283)
Q Consensus       270 k~iWaRky~pk~~  282 (283)
                      +.+-++...|++.
T Consensus        79 ~~l~v~~a~~~~~   91 (99)
T 2cpd_A           79 SPIEVTLAKPVDK   91 (99)
T ss_dssp             EEEEEECCCCCCC
T ss_pred             cEEEEEECCCCCC
Confidence            9998888877654

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.12  E-value=5.2e-06  Score=66.84  Aligned_cols=77  Identities=16%  Similarity=0.319  Sum_probs=64.2

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..+++||   +|.|  ++++||+++|.+ ||+  |+.+.+..   .+.+.+||.|.|.+.+....++.-   -...++|+
T Consensus        86 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~  156 (167)
T 2cjk_A           86 KTGKIFV---GGIGPDVRPKEFEEFFSQ-WGT--IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN---KFIDFKDR  156 (167)
T ss_dssp             HCEEEEE---EEECTTCCHHHHHHHHHT-TSC--CSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC---SEECSSSS
T ss_pred             CCCeEEE---CCCCCCCCHHHHHHHHHh-Ccc--EEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC---CCEEeCCe
Confidence            4568888   7777  999999999996 998  66676653   578889999999999999988872   35678999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+.++...||.
T Consensus       157 ~i~V~~a~pk~  167 (167)
T 2cjk_A          157 KIEIKRAEPRH  167 (167)
T ss_dssp             CEEEEECCCCC
T ss_pred             EEEEeecCCCC
Confidence            99999988874

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.1e-05  Score=64.27  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=57.7

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcCc
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLIL---GENELMQFNIHGK  270 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ingk  270 (283)
                      ||+||   +|.|  ++++||+++|.+ ||+  |++|.+-.  .++...||.|.|.+++.....+   +|.     .++|+
T Consensus         1 R~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~-----~~~g~   69 (166)
T 3md3_A            1 RVLYV---GNLDKAITEDILKQYFQV-GGP--IANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK-----QIENN   69 (166)
T ss_dssp             CEEEE---EEEETTCCHHHHHHHHGG-GSC--EEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC-----EETTE
T ss_pred             CEEEE---CCCCCcCCHHHHHHHHHh-cCC--eEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC-----ccCCC
Confidence            78888   7888  999999999996 998  66666643  5677899999999999988777   343     57899


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-++...++.
T Consensus        70 ~i~v~~~~~~~   80 (166)
T 3md3_A           70 IVKINWAFQSQ   80 (166)
T ss_dssp             ECEEEECCCCC
T ss_pred             eeEEEEcCCCC
Confidence            98877665543

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=98.11  E-value=5.4e-06  Score=69.34  Aligned_cols=80  Identities=20%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhC--CceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYG--EGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G--~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .++.+++||   +|.|  ++++||+++|.+ ||  + +++.-.+.+  +++..+||+|.|.+.+..+.++..-+.  ..|
T Consensus        52 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~i~-v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng--~~~  124 (156)
T 3n9u_C           52 RNRRAAVYV---GSFSWWTTDQQLIQVIRS-IGVYD-VVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG--KVL  124 (156)
T ss_dssp             ----CEEEE---ECCCTTCCHHHHHHHHHH-TTCCC-EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT--CEE
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HCCcc-EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence            456789988   7888  999999999975 99  7 444444444  788899999999999998877653221  268


Q ss_pred             cCceeEEEecccC
Q 048589          268 HGKDVRVRRFVPK  280 (283)
Q Consensus       268 ngk~iWaRky~pk  280 (283)
                      +|+.+-++...|+
T Consensus       125 ~Gr~l~V~~a~~~  137 (156)
T 3n9u_C          125 NGEKVDVRPATRQ  137 (156)
T ss_dssp             TTEECEEEECCHH
T ss_pred             CCeEeEEEEcCCC
Confidence            9999998877664

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.10  E-value=5.9e-06  Score=62.56  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=57.3

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeE--------EEeec---CCCCCceEEEEecChHHHHHHh-
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVED--------IKMGN---CRDQSLYARVIVRSPAFITLIL-  257 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~--------v~m~~---~~~qplfariVf~s~~~vd~vL-  257 (283)
                      ..+...+++||   +|.|  ++++||+++|.+ ||.  |+.        +.+-.   +++..+||.|.|.+.+.....+ 
T Consensus         8 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~   81 (99)
T 2la6_A            8 HSHSDNNTIFV---QGLGENVTIESVADYFKQ-IGI--IKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID   81 (99)
T ss_dssp             CSCCCCSEEEE---ECCCSSCCHHHHHHHHTT-TSC--BCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC--EeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence            44667789988   7888  999999999996 998  444        44432   6788899999999999877766 


Q ss_pred             --CCCCeeeEEEcCceeEEEe
Q 048589          258 --GENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       258 --~g~~~~kf~Ingk~iWaRk  276 (283)
                        +|.     .++|+.+-++.
T Consensus        82 ~l~g~-----~~~g~~l~V~~   97 (99)
T 2la6_A           82 WFDGK-----EFSGNPIKVSF   97 (99)
T ss_dssp             HHTTC-----BSSSSBCEEEE
T ss_pred             HhCCC-----EeCCcEEEEEe
Confidence              453     47888886653

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.10  E-value=8.4e-06  Score=63.69  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ..+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.|.|-     ..||.|.|.+.+.....+..-+..  .++|
T Consensus        26 ~~~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~--i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~--~~~g   92 (108)
T 2jvo_A           26 EGELSNTRLFV---RPFPLDVQESELNEIFGP-FGP--MKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGK--SFAN   92 (108)
T ss_dssp             --CCSCSEEEE---CSSCTTCCHHHHHHHHTT-TSC--CCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTC--EETT
T ss_pred             CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCC--EECC
Confidence            44667799998   8888  999999999986 998  7778774     689999999999877766421111  4699


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-+....|++
T Consensus        93 ~~l~V~~a~~~~  104 (108)
T 2jvo_A           93 QPLEVVYSKLPA  104 (108)
T ss_dssp             EECEEESCSCCC
T ss_pred             eEEEEEEecCCC
Confidence            999888776654

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.10  E-value=1e-06  Score=69.87  Aligned_cols=80  Identities=14%  Similarity=0.179  Sum_probs=61.9

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..+.+.+++||   +|.|  ++++||++||.. ||. ..+.+.|.+  .++...||+|.|.+++.....|. .+  ...|
T Consensus        20 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--g~~~   91 (124)
T 1wel_A           20 SPHEAGFCVYL---KGLPFEAENKHVIDFFKK-LDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH--KQYM   91 (124)
T ss_dssp             SCCCCCCEEEE---ECCCTTCCHHHHHHHSCS-SCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC--SBCS
T ss_pred             CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-ccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC--CCeE
Confidence            34567789988   8888  999999999986 997 544244433  78889999999999999888887 33  2368


Q ss_pred             cCceeEEEeccc
Q 048589          268 HGKDVRVRRFVP  279 (283)
Q Consensus       268 ngk~iWaRky~p  279 (283)
                      +|+.+.+....+
T Consensus        92 ~gr~i~V~~a~~  103 (124)
T 1wel_A           92 GNRFIQVHPITK  103 (124)
T ss_dssp             TTSCBEEEEECH
T ss_pred             CCcEEEEEECCH
Confidence            999998876544

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.10  E-value=1.5e-05  Score=58.39  Aligned_cols=71  Identities=23%  Similarity=0.402  Sum_probs=56.3

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhh----C-------CceeeEEEeecCCCCCceEEEEecChHHHHHHhCCC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRY----G-------EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGEN  260 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~----G-------~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~  260 (283)
                      +.+.||+||   +|.|  ++++|++++|.+ |    |       +  |.++.+.   ....||.|.|.+++.....+ ..
T Consensus         3 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~--v~~~~~~---~~kg~afV~f~~~~~a~~A~-~l   72 (87)
T 2hzc_A            3 LGSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNP--VLAVQIN---QDKNFAFLEFRSVDETTQAM-AF   72 (87)
T ss_dssp             SGGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCS--EEEEEEC---SSSSEEEEEESSHHHHHHHG-GG
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HhhhcccccCCCCc--ceEEEec---CCCcEEEEEcCCHHHHHHHH-hc
Confidence            456789988   7888  999999999997 8    7       6  7777773   34789999999999988887 43


Q ss_pred             CeeeEEEcCceeEEEe
Q 048589          261 ELMQFNIHGKDVRVRR  276 (283)
Q Consensus       261 ~~~kf~Ingk~iWaRk  276 (283)
                      +.  ..++|+.+-+++
T Consensus        73 ~g--~~~~g~~l~V~r   86 (87)
T 2hzc_A           73 DG--IIFQGQSLKIRR   86 (87)
T ss_dssp             TT--CEETTEECEEEC
T ss_pred             CC--CEECCeEEEEeC
Confidence            32  258999987764

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=98.09  E-value=1.5e-06  Score=69.68  Aligned_cols=82  Identities=11%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee---EEEeec-CCCCCceEEEEecChHHHHHH---hCCCCeee
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE---DIKMGN-CRDQSLYARVIVRSPAFITLI---LGENELMQ  264 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve---~v~m~~-~~~qplfariVf~s~~~vd~v---L~g~~~~k  264 (283)
                      ....+++||   +|.|  ++++||+++|.+ ||. ..+   +|.+.+ +++..+||+|.|.+. .....   |+|. ...
T Consensus        20 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~-v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~-~~~   92 (131)
T 2m2b_A           20 ENANDTIIL---RNLNPHSTMDSILGALAP-YAV-LSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL-HPP   92 (131)
T ss_dssp             SCCCCEEEE---CSCCTTCCSHHHHHHHGG-GCC-CCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC-CCS
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC-CCC
Confidence            456789988   8988  999999999986 998 433   343333 788999999999999 54444   4553 234


Q ss_pred             EEEcCceeEEEecccCCC
Q 048589          265 FNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       265 f~Ingk~iWaRky~pk~~  282 (283)
                      +.|+||.+-++...|++.
T Consensus        93 ~~~~gr~l~V~~a~~~~~  110 (131)
T 2m2b_A           93 LTIDGKTINVEFAKGSKR  110 (131)
T ss_dssp             CCGGGCCCCCEECCCSCC
T ss_pred             ccCCCEEEEEEECCCCCC
Confidence            568999998877777643

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.08  E-value=2.6e-05  Score=60.05  Aligned_cols=78  Identities=14%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+...+|+||   +|.|  ++++||+++|.+ ||.  |+.|.|-..   ..||+|.|.+.+....++..-+.  ..|+|+
T Consensus        21 ~~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g--~~~~g~   89 (109)
T 1x4g_A           21 SSPKNCTVYC---GGIASGLTDQLMRQTFSP-FGQ--IMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNG--TTIEGH   89 (109)
T ss_dssp             SCSSCCEEEE---ECCSSCCCHHHHHHHHHH-HSC--EEEEEEETT---TTEEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred             CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCC--CEECCc
Confidence            3556789998   8888  999999999996 998  777777442   78999999999987777632111  268999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-++...|++
T Consensus        90 ~l~v~~a~~~~  100 (109)
T 1x4g_A           90 VVKCYWGKESP  100 (109)
T ss_dssp             ECEEECCCCCC
T ss_pred             EEEEEecCCCC
Confidence            99887776654

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=98.07  E-value=2e-06  Score=64.43  Aligned_cols=74  Identities=20%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhC--CceeeEEEeec--CCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcC
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYG--EGCVEDIKMGN--CRDQSLYARVIVRSPAFITLIL---GENELMQFNIHG  269 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G--~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ing  269 (283)
                      |+||   +|.|  ++++||+++|.+ ||  + ..+.-.+.+  +++..+||+|.|.+.+.....+   +|.     .++|
T Consensus         3 ~l~V---~nL~~~~t~~~l~~~F~~-~G~~~-v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-----~~~g   72 (90)
T 3p5t_L            3 ALYI---GNLTWWTTDEDLTEAVHS-LGVND-ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-----ELHG   72 (90)
T ss_dssp             -CEE---ESCCTTCCHHHHHHHHHT-TTCCC-CCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS-----CSSS
T ss_pred             EEEE---eCCCCCCCHHHHHHHHHH-hCCCc-eEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC-----eeCC
Confidence            5666   7887  999999999986 99  7 444444444  7888999999999999877665   454     4899


Q ss_pred             ceeEEEecccCCC
Q 048589          270 KDVRVRRFVPKRA  282 (283)
Q Consensus       270 k~iWaRky~pk~~  282 (283)
                      |.+-++...|+.+
T Consensus        73 r~i~V~~~~~~~~   85 (90)
T 3p5t_L           73 QNPVVTPSNKLEH   85 (90)
T ss_dssp             CCCEECCC-----
T ss_pred             EEEEEEECCCCcc
Confidence            9999998887754

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.07  E-value=1.7e-05  Score=61.19  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=58.3

Q ss_pred             CCceEEEEccCCcc--C------CHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          196 TDRTLFATFSKGHP--I------TRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       196 d~RT~FvTFS~G~P--v------se~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+|+||   +|.|  +      ++++|+++|.+ ||.  |+.|.|-+ +++..+||+|.|.+.+.....+..-+-  ..
T Consensus        14 ~~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~--v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~   85 (105)
T 2nlw_A           14 IDSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK--ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG--YK   85 (105)
T ss_dssp             CCSEEEE---ESCCCCCTTTTTHHHHHHHHHHGG-GSC--EEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS--EE
T ss_pred             CCCEEEE---eCCCcchhhhhHHHHHHHHHHHhc-CCC--EEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC--cc
Confidence            3578988   7888  5      57999999986 998  77777755 778899999999999987776653221  35


Q ss_pred             EcCc-eeEEEecccC
Q 048589          267 IHGK-DVRVRRFVPK  280 (283)
Q Consensus       267 Ingk-~iWaRky~pk  280 (283)
                      ++|+ .+-+..+.+.
T Consensus        86 ~~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           86 LDKQHTFRVNLFTDF  100 (105)
T ss_dssp             CSTTCEEEEECSCCC
T ss_pred             cCCCceEEEEEcchH
Confidence            8898 6777665543

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.06  E-value=9.3e-06  Score=59.43  Aligned_cols=66  Identities=12%  Similarity=0.196  Sum_probs=50.8

Q ss_pred             CceEEEEccCCcc--C------CHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          197 DRTLFATFSKGHP--I------TRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       197 ~RT~FvTFS~G~P--v------se~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ++|+||   +|.|  +      +++|++++|.+ ||+  |+.|.|-+ +++..+||.|.|.+++.....+..-+-.  .+
T Consensus         1 ~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~--i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~   72 (81)
T 2krb_A            1 DSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK--ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY--KL   72 (81)
T ss_dssp             CCEEEE---ESCCCCCTTTHHHHHHHHHHHHHT-TCC--EEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC--CC
T ss_pred             CCEEEE---eCCCCCcHHHHHHHHHHHHHHHhh-cCC--eEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc--cc
Confidence            368887   7888  4      56999999986 998  67777755 7888999999999999988877632211  36


Q ss_pred             cCc
Q 048589          268 HGK  270 (283)
Q Consensus       268 ngk  270 (283)
                      +|+
T Consensus        73 ~g~   75 (81)
T 2krb_A           73 DKQ   75 (81)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            776

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.06  E-value=1.8e-05  Score=60.34  Aligned_cols=75  Identities=13%  Similarity=0.211  Sum_probs=57.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+..+++||   +|.|  ++++||+++|.. ||.  |+.|.+..  .++...||.|.|.+.+....++..-+.  ..|+
T Consensus        25 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   96 (107)
T 3ulh_A           25 GVETGGKLLV---SNLDFGVSDADIQELFAE-FGT--LKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG--VPLD   96 (107)
T ss_dssp             CCCCSEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence            4566789988   6887  999999999996 998  66666654  667788999999999987777552111  1579


Q ss_pred             CceeEEE
Q 048589          269 GKDVRVR  275 (283)
Q Consensus       269 gk~iWaR  275 (283)
                      |+.+-++
T Consensus        97 g~~l~V~  103 (107)
T 3ulh_A           97 GRPMNIQ  103 (107)
T ss_dssp             TEECEEE
T ss_pred             CcEEEEE
Confidence            9988765

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.06  E-value=1.3e-05  Score=62.04  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCC--ceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGE--GCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~--~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .++..+++||   +|.|  ++++||+++|.+ ||.  .|+..+.+. +++...||+|.|.+.+....++..-+.  ..|+
T Consensus        21 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~   93 (115)
T 2cpx_A           21 PGEPNKVLYL---KNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNG--YKLY   93 (115)
T ss_dssp             CCSCCSEEEE---ECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTT--CBCS
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence            3456789998   7888  999999999997 996  122444443 688889999999999998777642221  2469


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+-++...|++.
T Consensus        94 g~~l~v~~a~~~~~  107 (115)
T 2cpx_A           94 GKILVIEFGKNKKQ  107 (115)
T ss_dssp             SCBCEEEECCCCSC
T ss_pred             CcEEEEEEccCCCC
Confidence            99998888877654

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=9.8e-06  Score=61.39  Aligned_cols=81  Identities=21%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..+++.+|+||   +|.|  ++++||+++|.+ |++    ...+.+  .++...||+|.|.+++....++..-+.  ..|
T Consensus        10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~----~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~   79 (102)
T 2fc8_A           10 ARSQPSKTLFV---KGLSEDTTEETLKESFDG-SVR----ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED--GEI   79 (102)
T ss_dssp             SSSCCCSSEEE---ECCCTTCCHHHHHHTSTT-CSE----EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred             CCCCCCCEEEE---eCCCCccCHHHHHHHhcC-CeE----EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CeE
Confidence            44667899998   6888  999999999994 654    222322  677889999999999998777642111  258


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|+..
T Consensus        80 ~g~~l~V~~a~~~~~   94 (102)
T 2fc8_A           80 DGNKVTLDWAKPKGE   94 (102)
T ss_dssp             TTEECEEEECCCCCS
T ss_pred             CCeEEEEEEecCCCC
Confidence            999999998888764

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.05  E-value=1.1e-05  Score=64.81  Aligned_cols=78  Identities=18%  Similarity=0.188  Sum_probs=60.2

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..+|+||   +|.|  ++++||+++|.+ ||+  |++|.+-.   .++...||.|.|.+++.....+...+.  ..++|+
T Consensus         2 ~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~   73 (168)
T 1b7f_A            2 SNTNLIV---NYLPQDMTDRELYALFRA-IGP--INTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG--ITVRNK   73 (168)
T ss_dssp             CCSEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred             CccEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC--CEeCCc
Confidence            3589988   7988  999999999986 999  66666543   577889999999999998877642111  157999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-++...|+.
T Consensus        74 ~l~v~~~~~~~   84 (168)
T 1b7f_A           74 RLKVSYARPGG   84 (168)
T ss_dssp             ECEEEECCCCS
T ss_pred             EEEEEecCCCc
Confidence            99887666554

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.03  E-value=3.3e-05  Score=58.45  Aligned_cols=80  Identities=19%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..+..++||   +|.|  ++++|++    ++|.+ ||+  |++|.|-.......||+|.|.+.+.....+...+.  ..+
T Consensus         6 ~~~~~~l~V---~nL~~~~~~~~l~~~l~~~F~~-~G~--v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g--~~~   77 (96)
T 2dgx_A            6 SGNGADVQV---SNIDYRLSRKELQQLLQEAFAR-HGK--VKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR--YKI   77 (96)
T ss_dssp             CSSCEEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSC--EEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred             CCCCCEEEE---ECCCCCCCHHHHHHHHHHhccc-cCc--EEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC--CEE
Confidence            456678888   7888  9999999    99996 998  77777754111167999999999987777552221  258


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +||.+-++...|+.
T Consensus        78 ~gr~l~V~~a~~~~   91 (96)
T 2dgx_A           78 GSKKILVSLATGAS   91 (96)
T ss_dssp             TTEEEEEEECCCSS
T ss_pred             CCeEEEEEEcCCCC
Confidence            99999888777654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.02  E-value=1.1e-05  Score=59.14  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~  258 (283)
                      +...+++||   +|.|  ++++||+++|.+ ||+  |+++.|..   +++...||.|.|.+.+....++.
T Consensus         2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~   65 (85)
T 1x4e_A            2 SSGSSGLYI---RGLQPGTTDQDLVKLCQP-YGK--IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT   65 (85)
T ss_dssp             CCCCCEEEE---ESCCTTCCHHHHHTTSTT-TSC--EEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence            556789998   7888  999999999996 998  77776654   57888999999999998777665

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.02  E-value=2e-05  Score=67.44  Aligned_cols=78  Identities=26%  Similarity=0.273  Sum_probs=57.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +...+||||   +|.|  ++|+||+++|.+ ||+  |++|.+ .+  +++..+||.|.|.+++.....+...+.  ..++
T Consensus        12 ~~p~~tlfV---gnLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~--~~~~   83 (213)
T 4f02_A           12 SYPMASLYV---GDLHPDVTEAMLYEKFSP-AGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF--DVIK   83 (213)
T ss_dssp             ---CCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHHh-hCC--EEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh--hhcC
Confidence            445689998   8988  999999999986 999  555554 33  688899999999999998877642111  1578


Q ss_pred             CceeEEEeccc
Q 048589          269 GKDVRVRRFVP  279 (283)
Q Consensus       269 gk~iWaRky~p  279 (283)
                      ||.+.+....+
T Consensus        84 g~~i~~~~~~~   94 (213)
T 4f02_A           84 GKPVRIMWSQR   94 (213)
T ss_dssp             TEECEEEECCC
T ss_pred             Ccccccccccc
Confidence            88887765443

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.01  E-value=7.1e-06  Score=64.94  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCC-ceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGE-GCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~-~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+.+.+|+||   +|.|  +|++||++||.. ||. +.|+.|.|-.  .++...||.|.|.+++.....|. .+.  ..|
T Consensus        13 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g--~~~   85 (118)
T 2db1_A           13 EGGEGYVVKL---RGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDR--ESM   85 (118)
T ss_dssp             CBCCCCEEEE---ESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTT--EEE
T ss_pred             CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CeE
Confidence            3556788988   7988  999999999997 885 1255665543  57788999999999999998887 332  468


Q ss_pred             cCceeEEEecc
Q 048589          268 HGKDVRVRRFV  278 (283)
Q Consensus       268 ngk~iWaRky~  278 (283)
                      +|+.+-+..-.
T Consensus        86 ~gr~i~V~~a~   96 (118)
T 2db1_A           86 GHRYIEVFKSH   96 (118)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCeEEEEEECC
Confidence            99988776543

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.01  E-value=7.5e-06  Score=62.75  Aligned_cols=75  Identities=13%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             CCceEEEEccCCccC--------CHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCC
Q 048589          196 TDRTLFATFSKGHPI--------TRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENE  261 (283)
Q Consensus       196 d~RT~FvTFS~G~Pv--------se~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~  261 (283)
                      .++|+||   +|.|.        ++++|+++|.+ ||+  |++|.|-.   +++..+||+|.|.+++.....+   +|. 
T Consensus         5 ~~~~vfV---~nLp~v~~~~~~~~~~~L~~~F~~-~G~--i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-   77 (100)
T 3ns6_A            5 SDQYIVV---NGAPVIPSAKVPVLKKALTSLFSK-AGK--VVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK-   77 (100)
T ss_dssp             GGGEEEE---ESCCCCBGGGHHHHHHHHHHHHHT-TSC--EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-
T ss_pred             cCcEEEE---eCCCcCChHHHHHHHHHHHHHHHh-cCC--EeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-
Confidence            3678988   78775        78999999996 998  66776653   5888999999999988866654   564 


Q ss_pred             eeeEEEcC-ceeEEEecccCC
Q 048589          262 LMQFNIHG-KDVRVRRFVPKR  281 (283)
Q Consensus       262 ~~kf~Ing-k~iWaRky~pk~  281 (283)
                          .++| +.+-++...|+.
T Consensus        78 ----~~~g~r~l~V~~a~~~~   94 (100)
T 3ns6_A           78 ----RLDLKHRLFLYTMKDVE   94 (100)
T ss_dssp             ----BSSSSCBCEEEESHHHH
T ss_pred             ----ccCCCeEEEEEECchhh
Confidence                4788 999888877753

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.01  E-value=6.9e-06  Score=62.25  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=57.3

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+.+.+|+||   +|.|  ++++||+++|.+ ||.  |+++.|.   +...||+|.|.+.+.....+..-+  ...++|+
T Consensus        23 ~~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~--i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~   91 (101)
T 2la4_A           23 APPRVTTAYI---GNIPHFATEADLIPLFQN-FGF--ILDFKHY---PEKGCCFIKYDTHEQAAVCIVALA--NFPFQGR   91 (101)
T ss_dssp             SCSSCCEEEE---ESCCTTCCHHHHHHHHHT-TSC--CSEEEEE---TTTTEEEEECSSHHHHHHHHHHHT--TCEETTE
T ss_pred             CCCCCCEEEE---cCCCcccCHHHHHHHHHh-CCC--EEEEEEe---cCCCEEEEEECCHHHHHHHHHHhC--CCeECCe
Confidence            3456789998   7887  999999999986 998  7788874   467899999999998776664211  1257899


Q ss_pred             eeEEEeccc
Q 048589          271 DVRVRRFVP  279 (283)
Q Consensus       271 ~iWaRky~p  279 (283)
                      .+-++...|
T Consensus        92 ~l~V~~a~~  100 (101)
T 2la4_A           92 NLRTGWGKE  100 (101)
T ss_dssp             ECCCCBCCC
T ss_pred             EEEEEeccC
Confidence            886555444

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.01  E-value=9.4e-06  Score=62.90  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=61.6

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN-CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..+.+.+++||   +|.|  ++++||++||.. ||. .  .|.| .+ .++...||.|.|.+++.....|.- +  ...|
T Consensus        10 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~--~~~~   79 (102)
T 1wez_A           10 FQSTTGHCVHM---RGLPYRATENDIYNFFSP-LNP-M--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAK-D--KANM   79 (102)
T ss_dssp             CCCSSSCEEEE---ESCCTTCCHHHHHHSSCS-CCC-S--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTT-S--SCCS
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCc-e--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C--CCeE
Confidence            34667789988   7888  999999999996 996 3  3333 33 778889999999999998888852 2  2368


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +||.|-+..-.++.
T Consensus        80 ~gr~i~V~~~~~~~   93 (102)
T 1wez_A           80 QHRYVELFLNSTAG   93 (102)
T ss_dssp             SSSCCEEEEECCCC
T ss_pred             CCcEEEEEECCCCC
Confidence            99988877665544

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.01  E-value=2.2e-05  Score=62.63  Aligned_cols=77  Identities=19%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .||+||   +|.|  ++++||+++|.+ ||+  |+++.+-.   .+++..||.|.|.+++.....+..-+.  ..++|+.
T Consensus         2 ~~~l~v---~nlp~~~~~~~l~~~f~~-~G~--i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~   73 (167)
T 1fxl_A            2 KTNLIV---NYLPQNMTQEEFRSLFGS-IGE--IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKT   73 (167)
T ss_dssp             CSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEE
T ss_pred             cceEEE---cCCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC--CccCCce
Confidence            478988   7888  999999999996 998  66666654   677789999999999998887642111  2578999


Q ss_pred             eEEEecccCC
Q 048589          272 VRVRRFVPKR  281 (283)
Q Consensus       272 iWaRky~pk~  281 (283)
                      +-++...|+.
T Consensus        74 l~v~~~~~~~   83 (167)
T 1fxl_A           74 IKVSYARPSS   83 (167)
T ss_dssp             CEEEECCCCC
T ss_pred             EEEEecCCCc
Confidence            8887666543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.00  E-value=2.6e-05  Score=56.97  Aligned_cols=71  Identities=20%  Similarity=0.347  Sum_probs=55.0

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCC-CeeeEEEcCc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGEN-ELMQFNIHGK  270 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~-~~~kf~Ingk  270 (283)
                      +...+|+||   +|.|  ++++||+++|.+ ||+  |+.+.+-.   ...||.|.|.+.+.....+..- +  ...++|+
T Consensus         9 ~~~~~~l~V---~~l~~~~t~~~l~~~f~~-~G~--i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~--~~~~~g~   77 (85)
T 2ytc_A            9 DKTITTLYV---GGLGDTITETDLRNHFYQ-FGE--IRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFN--KLIVNGR   77 (85)
T ss_dssp             CSSCCCEEE---ECCTTTSCHHHHHHHHHT-TSC--EEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTT--TCEETTE
T ss_pred             CCCccEEEE---cCCCCCCCHHHHHHHHHh-CCC--EeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcC--CeeECCC
Confidence            456689988   6887  999999999986 998  77787754   3679999999999988877532 1  1268888


Q ss_pred             eeEEE
Q 048589          271 DVRVR  275 (283)
Q Consensus       271 ~iWaR  275 (283)
                      .+-++
T Consensus        78 ~l~v~   82 (85)
T 2ytc_A           78 RLNVK   82 (85)
T ss_dssp             ECCEE
T ss_pred             EEEEE
Confidence            77443

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=98.00  E-value=9.4e-06  Score=62.79  Aligned_cols=77  Identities=16%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhC---CCCeeeE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILG---ENELMQF  265 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~---g~~~~kf  265 (283)
                      .++-.|+||   +|.|  +|+++|+++|.+ ||.--+.+|.+- +  +++..+||+|.|.+++....++.   |. .-.+
T Consensus         6 ~~~m~tlfV---~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~-~~~~   80 (95)
T 2lkz_A            6 HHHMDTIIL---RNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL-HPPL   80 (95)
T ss_dssp             SCCCCEEEE---ESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS-SSCE
T ss_pred             CCccCEEEE---eCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC-CCCc
Confidence            345568988   9999  999999999986 995114455543 3  68889999999999988777664   43 2468


Q ss_pred             EEcCceeEEE
Q 048589          266 NIHGKDVRVR  275 (283)
Q Consensus       266 ~Ingk~iWaR  275 (283)
                      .|+||.+-+.
T Consensus        81 ~i~Gr~i~V~   90 (95)
T 2lkz_A           81 KIDGKTIGVD   90 (95)
T ss_dssp             EETTEEEEEE
T ss_pred             eECCEEEEEE
Confidence            9999999654

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.99  E-value=1e-05  Score=63.02  Aligned_cols=80  Identities=15%  Similarity=0.238  Sum_probs=61.5

Q ss_pred             CCCceEEEEccCCcc--CCHHHHH---HHHHhhhCCceeeEEEeec-C-----CCCCceEEEEecChHHHHHHhCCCCee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELF---EFFTRRYGEGCVEDIKMGN-C-----RDQSLYARVIVRSPAFITLILGENELM  263 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~---~fFt~~~G~~cve~v~m~~-~-----~~qplfariVf~s~~~vd~vL~g~~~~  263 (283)
                      ...+++||   +|.|  ++++|++   ++|.+ ||+  |+.|.|.. .     ++...||.|.|.+++.....+..-+- 
T Consensus        13 ~~~~~l~V---~nLp~~~~~~~l~~~~~~F~~-~G~--i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng-   85 (111)
T 2cpi_A           13 VQKNLVFV---VGLSQRLADPEVLKRPEYFGK-FGK--IHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN-   85 (111)
T ss_dssp             CCSSCEEE---EEECTTTCCHHHHHSTTTTTT-TSC--EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT-
T ss_pred             cCCCEEEE---ECCCCCCCHHHHHHHHHHhhc-cCC--EEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC-
Confidence            34678988   7888  9999999   99996 999  66666654 2     24558999999999988777664221 


Q ss_pred             eEEEcCceeEEEecccCCC
Q 048589          264 QFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       264 kf~Ingk~iWaRky~pk~~  282 (283)
                       ..|+|+.+-+....||..
T Consensus        86 -~~~~gr~l~V~~a~~k~~  103 (111)
T 2cpi_A           86 -VVVDGRTLKASLGTTKYC  103 (111)
T ss_dssp             -EEETTEEEEEESCCCCSC
T ss_pred             -CEECCEEEEEEecccccc
Confidence             258999999988888764

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=97.99  E-value=1.7e-05  Score=65.91  Aligned_cols=80  Identities=20%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+.+||||   +|.|  +++++|+++|.+ ||+  |+.|.|..   ++....||+|.|.+.+....++..-+.  ..|+
T Consensus        69 ~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~  140 (165)
T 1rk8_A           69 SVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE--IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIM  140 (165)
T ss_dssp             CC-CEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHhhc-CCC--EEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence            345678988   6888  999999999986 998  66666653   677889999999999987776642111  2579


Q ss_pred             CceeEEEecccCC
Q 048589          269 GKDVRVRRFVPKR  281 (283)
Q Consensus       269 gk~iWaRky~pk~  281 (283)
                      |+.+-+....|+.
T Consensus       141 g~~l~V~~a~~~~  153 (165)
T 1rk8_A          141 GQTIQVDWCFVKG  153 (165)
T ss_dssp             TEECEEEESEECC
T ss_pred             CEEEEEEEecCCC
Confidence            9999777666554

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=3.5e-05  Score=57.69  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEE-EeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDI-KMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v-~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~I  267 (283)
                      +...+++||   +|.|  ++++||+++|.+ ||+  |+.+ .+.. ......|+|.|.+.+.....+   +|.     .|
T Consensus        12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~~~~i~~-~~~~~~afV~f~~~~~a~~Ai~~l~g~-----~~   79 (96)
T 2e44_A           12 RQRIRKLQI---RNIPPHLQWEVLDSLLVQ-YGV--VESCEQVNT-DSETAVVNVTYSSKDQARQALDKLNGF-----QL   79 (96)
T ss_dssp             CCSCCCEEE---EEECSSSCHHHHHHHHHH-HSC--EEEEEEECC-SSSSEEEEEEESSHHHHHHHHHHHTTC-----BC
T ss_pred             CCCCCEEEE---EcCCCCCCHHHHHHHHHh-cCC--eEEEEEeec-CCCCCEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence            445689988   7877  999999999996 998  6666 3332 112223999999999877665   453     47


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-+....|+..
T Consensus        80 ~g~~l~V~~a~~~~~   94 (96)
T 2e44_A           80 ENFTLKVAYIPDEMA   94 (96)
T ss_dssp             SSCBCEEEECCCCCS
T ss_pred             CCcEEEEEEcCcccc
Confidence            999999999988864

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.96  E-value=7.6e-06  Score=66.56  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .+..+++||   ++.|  ++|+||+++|.+ ||.  |++|.|-.   ...||+|.|.+++.....+...+.-...|+||.
T Consensus        28 ~~ps~~LfV---gNLp~~vte~dL~~lF~~-fG~--V~~v~i~~---~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~   98 (119)
T 2ad9_A           28 GVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK--VTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP   98 (119)
T ss_dssp             SSCCSEEEE---ESCCTTCCHHHHHHHHTT-TSC--CCEEEEEG---GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEeC---CCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence            345689998   7888  999999999996 998  66666643   268999999999887777652221124689999


Q ss_pred             eEEEecccCCC
Q 048589          272 VRVRRFVPKRA  282 (283)
Q Consensus       272 iWaRky~pk~~  282 (283)
                      +-+....+|+.
T Consensus        99 l~V~~a~~k~~  109 (119)
T 2ad9_A           99 IYIQFSNHKEL  109 (119)
T ss_dssp             CEEEECSSSSC
T ss_pred             EEEEEccCCCC
Confidence            98887766653

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=8.4e-06  Score=66.16  Aligned_cols=77  Identities=16%  Similarity=0.113  Sum_probs=59.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce---eeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC---VEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c---ve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      .++.+++||   +|.|  +|++||++||.. ||. .   |++|.|-.  .++...||+|.|.+++.....|.- +.  -.
T Consensus        20 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~g~-v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~--~~   91 (123)
T 2dha_A           20 KENQVIVRM---RGLPFTATAEEVVAFFGQ-HCP-ITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HK--DL   91 (123)
T ss_dssp             CCSCCEEEE---CSCCTTCCHHHHHHHHHT-TSC-CTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TT--EE
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCC-ccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CC--Ce
Confidence            456678887   8999  999999999997 997 4   35565543  788899999999999999988874 22  36


Q ss_pred             EcCceeEEEecc
Q 048589          267 IHGKDVRVRRFV  278 (283)
Q Consensus       267 Ingk~iWaRky~  278 (283)
                      ++|+.|-+.+-.
T Consensus        92 l~gR~i~V~~a~  103 (123)
T 2dha_A           92 LGKRYIELFRST  103 (123)
T ss_dssp             SSSCEECCEEEC
T ss_pred             eCCeEEEEEECC
Confidence            888877665443

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=97.96  E-value=3.8e-05  Score=59.24  Aligned_cols=75  Identities=12%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             CCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .....+++||   +|.|   ++++||+++|.+ ||+  |+.|.|     ...||+|.|.+.+....++..-+.  ..|+|
T Consensus        23 ~~~~~~~l~V---~nl~~~~~t~~~l~~~F~~-~G~--v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g--~~~~g   89 (110)
T 1wf1_A           23 PKSINSRVFI---GNLNTALVKKSDVETIFSK-YGR--VAGCSV-----HKGYAFVQYSNERHARAAVLGENG--RVLAG   89 (110)
T ss_dssp             CTTCSSEEEE---CSCCCSSCCHHHHHHHHGG-GSC--CSEEEE-----ETTEEEEECSSSHHHHHHHHHHTT--CEETT
T ss_pred             CCCCCcEEEE---eCCCcccCCHHHHHHHHHh-CCC--eEEEEE-----eCCEEEEEECCHHHHHHHHHHcCC--CEECC
Confidence            3445689998   7877   799999999986 998  778888     357999999999988777742111  25799


Q ss_pred             ceeEEEecccC
Q 048589          270 KDVRVRRFVPK  280 (283)
Q Consensus       270 k~iWaRky~pk  280 (283)
                      +.+-++...++
T Consensus        90 ~~l~V~~a~~~  100 (110)
T 1wf1_A           90 QTLDINMAGEP  100 (110)
T ss_dssp             EECCEEESCCC
T ss_pred             eEEEEEECCCC
Confidence            99988776643

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=97.95  E-value=2e-05  Score=64.00  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~  266 (283)
                      ..+...+++||   +|.|  ++++||+++|.+ ||+  |+.|.+..  .+..||+|.|.+.+.....+   +|.     .
T Consensus        68 ~~~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--i~~v~i~~--~~~g~afV~f~~~~~a~~A~~~l~g~-----~  134 (150)
T 2i2y_A           68 DSCPLDCKVYV---GNLGNNGNKTELERAFGY-YGP--LRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR-----T  134 (150)
T ss_dssp             SSSTTSCEEEE---ESCCSCCSCHHHHHHHHH-HSC--EEEEEECS--SSCSEEEEEESSHHHHHHHHHHHSSS-----C
T ss_pred             cCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCC--EEEEEEee--CCCcEEEEEECCHHHHHHHHHHcCCC-----E
Confidence            34556789998   7887  999999999997 999  67777743  36789999999999877765   453     3


Q ss_pred             EcCceeEEEecccCC
Q 048589          267 IHGKDVRVRRFVPKR  281 (283)
Q Consensus       267 Ingk~iWaRky~pk~  281 (283)
                      |+|+.+-++...|++
T Consensus       135 ~~g~~l~v~~a~~~~  149 (150)
T 2i2y_A          135 LCGCRVRVELSNGEK  149 (150)
T ss_dssp             SSSSCCEEEECCCCC
T ss_pred             ECCeEEEEEEcCCCC
Confidence            799999988877765

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=97.95  E-value=5.8e-06  Score=64.00  Aligned_cols=79  Identities=16%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce--eeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC--VEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c--ve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      .+.+.+++||   +|.|  +|++||++||.. ||. .  |+.|.+-.  .++..+||+|.|.+.+.....|. .+.  ..
T Consensus         7 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~-~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~   78 (107)
T 2lmi_A            7 EVDDVFLIRA---QGLPWSCTMEDVLNFFSD-CRI-RNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR--MY   78 (107)
T ss_dssp             CCSSCCEEEE---ECCCSSCCSHHHHHHTTT-SCB-TTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT--CC
T ss_pred             CCCCccEEEE---eCCCCCCCHHHHHHHHHh-cCC-cCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc--ce
Confidence            3556778887   8888  999999999996 774 3  66676654  57889999999999999888887 332  24


Q ss_pred             EcCceeEEEeccc
Q 048589          267 IHGKDVRVRRFVP  279 (283)
Q Consensus       267 Ingk~iWaRky~p  279 (283)
                      |+|+.+-+....|
T Consensus        79 ~~gr~i~V~~a~~   91 (107)
T 2lmi_A           79 MGQRYVEVYEINN   91 (107)
T ss_dssp             SSSSCCCCEECCH
T ss_pred             eCCeEEEEEECCH
Confidence            7899887766544

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=97.92  E-value=3.3e-05  Score=63.72  Aligned_cols=82  Identities=16%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+...+++||   +|.|  ++++||+++|.+ ||+  |+.+.+..   .+....||.|.|.+.+....++..-+.  ..|
T Consensus       110 ~~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~--v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~  181 (198)
T 2yh0_A          110 VPDSAHKLFI---GGLPNYLNDDQVKELLTS-FGP--LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQL  181 (198)
T ss_dssp             SSCCCCEEEE---ECCCTTCCHHHHHHHHHT-BSC--EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT--CEE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC--ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence            4567799988   6888  999999999996 998  66666653   577789999999999887766542111  257


Q ss_pred             cCceeEEEecccCCC
Q 048589          268 HGKDVRVRRFVPKRA  282 (283)
Q Consensus       268 ngk~iWaRky~pk~~  282 (283)
                      +|+.+-++...|+..
T Consensus       182 ~g~~l~v~~a~~~~~  196 (198)
T 2yh0_A          182 GDKKLLVQRASVGAK  196 (198)
T ss_dssp             TTEECEEEESCCCCC
T ss_pred             CCEEEEEEECCCCCC
Confidence            999999999888764

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=97.91  E-value=1.5e-05  Score=65.72  Aligned_cols=79  Identities=13%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce--eeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC--VEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c--ve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      .+++.+++||   +|.|  +|++||++||.+ ||. .  |++|.+-.  .++...||.|.|.+++..+..|. .+.  ..
T Consensus        40 ~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~G~-v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g--~~  111 (136)
T 2hgl_A           40 EGGEGFVVKL---RGLPWSCSVEDVQNFLSD-CTI-HDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR--ES  111 (136)
T ss_dssp             SCCTTCEEEE---ESCCTTCCHHHHHHHTTT-CCC-SSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE--EE
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CE
Confidence            3556788887   8988  999999999997 996 4  56666543  57788999999999999998887 442  46


Q ss_pred             EcCceeEEEeccc
Q 048589          267 IHGKDVRVRRFVP  279 (283)
Q Consensus       267 Ingk~iWaRky~p  279 (283)
                      |+||.+-+..-.|
T Consensus       112 l~gr~i~V~~a~~  124 (136)
T 2hgl_A          112 MGHRYIEVFKSHR  124 (136)
T ss_dssp             SSSSEEEEEECCH
T ss_pred             ECCEEEEEEECCh
Confidence            8999887765443

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=97.91  E-value=2.5e-05  Score=67.18  Aligned_cols=71  Identities=18%  Similarity=0.249  Sum_probs=59.0

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      +.||+||   +|.|  +++++|+++|.+ ||.  |..|.|..  .++..+||+|.|.+++....++.....   .++|+.
T Consensus       108 ~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~--v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~---~~~Gr~  178 (193)
T 2voo_A          108 KNRSVYI---KGFPTDATLDDIKEWLED-KGQ--VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ---KYKETD  178 (193)
T ss_dssp             HHTEEEE---ECCCTTCCHHHHHHHHTT-SCC--EEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC---EETTEE
T ss_pred             ccCEEEe---cCCCCcCCHHHHHHHHhc-CCC--EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC---eECCEE
Confidence            3589988   8888  999999999996 998  77787765  577789999999999999999875442   799999


Q ss_pred             eEEE
Q 048589          272 VRVR  275 (283)
Q Consensus       272 iWaR  275 (283)
                      +-++
T Consensus       179 l~V~  182 (193)
T 2voo_A          179 LLIL  182 (193)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            8443

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=97.90  E-value=9.4e-05  Score=56.37  Aligned_cols=78  Identities=15%  Similarity=0.327  Sum_probs=59.1

Q ss_pred             CCCCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          191 ANDADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       191 ~~~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ...+.+.+++||   +|.|   ++++|++++|.+ ||+  |+.|.|.     ..||.|.|.+.+....++...+.  ..+
T Consensus        16 ~~~~~~~~~l~V---~nLp~~~~t~~~L~~~F~~-~G~--v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g--~~~   82 (97)
T 2xnq_A           16 PRGSHMKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH--IMQINIK-----NAFGFIQFDNPQSVRDAIEXESQ--EMN   82 (97)
T ss_dssp             ---CCTTCEEEE---ESCCSSCCCHHHHHHHHGG-GSC--EEEEEEC-----SSEEEEEESSHHHHHHHHHHHTT--SEE
T ss_pred             cCCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC--EEEEEEe-----CCEEEEEECCHHHHHHHHHHcCC--CEE
Confidence            345667899999   6776   699999999997 998  8888882     67999999999987777652111  257


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+-++...++.
T Consensus        83 ~g~~l~V~~a~~~~   96 (97)
T 2xnq_A           83 FGKKLILEVSSSNA   96 (97)
T ss_dssp             TTEECEEEECCCCC
T ss_pred             CCEEEEEEecCCCC
Confidence            89999887766553

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=97.88  E-value=1.8e-05  Score=64.64  Aligned_cols=79  Identities=23%  Similarity=0.249  Sum_probs=61.1

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee-EEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE-DIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve-~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~  266 (283)
                      ..+++.+++||   +|.|  +|++||++||.. | . .++ +|.|-.  .++..+||.|.|.+++..+..|.-..   -.
T Consensus        37 ~~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~-~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~---~~  107 (126)
T 2hgm_A           37 ADSANDGFVRL---RGLPFGCTKEEIVQFFSG-L-E-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK---ER  107 (126)
T ss_dssp             TCSSSCCEEEE---ECCCTTCCHHHHHHHTTT-S-C-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTT---CC
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHhc-C-C-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCC---CE
Confidence            45667888888   8998  999999999997 6 4 342 666643  57889999999999999998887422   36


Q ss_pred             EcCceeEEEeccc
Q 048589          267 IHGKDVRVRRFVP  279 (283)
Q Consensus       267 Ingk~iWaRky~p  279 (283)
                      |+||.|-+.+-.|
T Consensus       108 l~gR~I~V~~a~~  120 (126)
T 2hgm_A          108 IGHRYIEVFKSSQ  120 (126)
T ss_dssp             BTTBCCCCEEECH
T ss_pred             ECCEEEEEEECCH
Confidence            8999887665443

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=97.88  E-value=1.5e-05  Score=59.41  Aligned_cols=76  Identities=14%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ++..+++||   +|.|  ++++||+++|.+ ||. ..+...+.+  .++...||.|.|.+++.....+...+.  ..|+|
T Consensus        12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g   84 (95)
T 2ek1_A           12 KPGPTVIKV---QNMPFTVSIDEILDFFYG-YQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIGS   84 (95)
T ss_dssp             ---CEEEEE---ECCCTTCCHHHHHHHTTT-SCB-CTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-ccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC--CeECC
Confidence            344588988   7888  999999999986 997 443344443  677889999999999987777652111  25789


Q ss_pred             ceeEEEe
Q 048589          270 KDVRVRR  276 (283)
Q Consensus       270 k~iWaRk  276 (283)
                      +.+-+..
T Consensus        85 r~l~v~~   91 (95)
T 2ek1_A           85 RKVKLSG   91 (95)
T ss_dssp             EECEEEC
T ss_pred             cEEEEEe
Confidence            9887654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=2.2e-05  Score=62.16  Aligned_cols=76  Identities=16%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ..+.+++||   +|.|  ++++||++||.. | .  |++|.|- + .++..+||.|.|.+++..+..|. .+  .-.|+|
T Consensus        13 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~-~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~~~g   82 (109)
T 2dnn_A           13 NPDDLYVSV---HGMPFSAMENDVRDFFHG-L-R--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RN--RMLMIQ   82 (109)
T ss_dssp             CHHHHEEEE---ECCCSSCCHHHHHHHTTT-S-C--CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TT--TEEETT
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHhcc-C-C--eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC--CCeECC
Confidence            445678877   9999  999999999997 6 4  4555554 3 67889999999999999888874 22  236899


Q ss_pred             ceeEEEeccc
Q 048589          270 KDVRVRRFVP  279 (283)
Q Consensus       270 k~iWaRky~p  279 (283)
                      |.|.+.+-.+
T Consensus        83 r~i~V~~a~~   92 (109)
T 2dnn_A           83 RYVEVSPATE   92 (109)
T ss_dssp             EEEEEEECCH
T ss_pred             eEEEEEECCc
Confidence            9887765433

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.84  E-value=3.4e-05  Score=60.81  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=56.3

Q ss_pred             CCCCCceEEEEccCCccC---CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHPI---TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~Pv---se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      -++..+++||   ++.|-   +|+||+++|.+ ||.  |.+|.|-.   .+.||+|.|.+++.....+...+.....|+|
T Consensus        11 ~~~p~~~l~V---~nLp~~~~te~dL~~lF~~-fG~--V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G   81 (102)
T 1x4d_A           11 RVETRRVVHI---MDFQRGKNLRYQLLQLVEP-FGV--ISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFG   81 (102)
T ss_dssp             CCCCCCEEEE---ESCCCSSSHHHHHHTTTGG-GSC--EEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred             CCCCCCEEEE---eCCCCCcCCHHHHHHHHHh-cCC--EEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence            3456789998   77775   99999999996 998  66666633   3479999999988877666532212346899


Q ss_pred             ceeEEEecc
Q 048589          270 KDVRVRRFV  278 (283)
Q Consensus       270 k~iWaRky~  278 (283)
                      |++.+..-.
T Consensus        82 r~l~V~~a~   90 (102)
T 1x4d_A           82 KPVRVHLSQ   90 (102)
T ss_dssp             EECEEEEEC
T ss_pred             cEEEEEECC
Confidence            999655443

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=97.03  E-value=2.5e-06  Score=66.61  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=61.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeE--------EEeec---CCCCCceEEEEecChHHHHHHhCCC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVED--------IKMGN---CRDQSLYARVIVRSPAFITLILGEN  260 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~--------v~m~~---~~~qplfariVf~s~~~vd~vL~g~  260 (283)
                      ..+.+++||   +|.|  ++++||+++|.+ ||. + +.        |.+..   +++...||+|.|.+.+....++..-
T Consensus         4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i-~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l   77 (116)
T 2lcw_A            4 NSDNNTIFV---QGLGENVTIESVADYFKQ-IGI-I-KTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF   77 (116)
Confidence            346788888   7888  999999999997 998 4 43        44432   5788899999999999988877632


Q ss_pred             CeeeEEEcCceeEEEecccCCC
Q 048589          261 ELMQFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       261 ~~~kf~Ingk~iWaRky~pk~~  282 (283)
                      +.  ..|+|+.+-++...|++.
T Consensus        78 ~g--~~~~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           78 DG--KEFSGNPIKVSFATRRAD   97 (116)
Confidence            22  357899998877776653

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=97.82  E-value=3e-05  Score=58.72  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=56.1

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk  276 (283)
                      |+||   +|.|  ++++||+++|.+ ||+  |+.|.|...  ...||.|.|.+++....++..-+..  .++|+.+-++.
T Consensus         2 ~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~   71 (101)
T 2hvz_A            2 KVYV---GNLGTGAGKGELERAFSY-YGP--LRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRVEL   71 (101)
T ss_dssp             EEEE---ECCCSSCSHHHHHHHHHH-HCC--CSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEEEE
T ss_pred             EEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEEEE
Confidence            6676   6877  999999999986 998  677777542  7789999999999988776521111  47899998887


Q ss_pred             cccCC
Q 048589          277 FVPKR  281 (283)
Q Consensus       277 y~pk~  281 (283)
                      ..|++
T Consensus        72 a~~~~   76 (101)
T 2hvz_A           72 STGMP   76 (101)
T ss_dssp             SSSCC
T ss_pred             ccCCC
Confidence            76654

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=97.81  E-value=0.00014  Score=59.06  Aligned_cols=75  Identities=11%  Similarity=0.153  Sum_probs=56.8

Q ss_pred             CCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589          195 DTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQF  265 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf  265 (283)
                      +..+|+||   +|.|  +++++++    ++|.+ ||+  |++|.+...++..+||+|.|.+.+..+..+   +|.     
T Consensus        27 ~p~~~LfV---~nL~~~~~e~~L~~~L~~~F~~-~G~--I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~-----   95 (127)
T 2a3j_A           27 EPSQVVLI---TNINPEVPKEKLQALLYALASS-QGD--ILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY-----   95 (127)
T ss_dssp             SCCSEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSC--EEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC-----
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHHHhcc-CCC--eEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC-----
Confidence            34689998   7777  8999876    68986 999  667777666788999999999988766555   564     


Q ss_pred             EEcCceeEEEecccC
Q 048589          266 NIHGKDVRVRRFVPK  280 (283)
Q Consensus       266 ~Ingk~iWaRky~pk  280 (283)
                      .++|+.+-+..-.++
T Consensus        96 ~l~gr~l~V~~a~~~  110 (127)
T 2a3j_A           96 PFQGNPLVITFSETP  110 (127)
T ss_dssp             CCTTSCCEEEECCCC
T ss_pred             EeCCCEEEEEEccCc
Confidence            478888866554443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.81  E-value=3.8e-05  Score=64.25  Aligned_cols=79  Identities=15%  Similarity=0.205  Sum_probs=58.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .++.+|+||   +|.|  ++++||+++|.+ ||+  |+.|.+-.   .++...||.|.|.+++.....+...+.  ..|+
T Consensus        25 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~   96 (216)
T 2qfj_A           25 LAIMSRVYV---GSIYYELGEDTIRQAFAP-FGP--IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS--VMLG   96 (216)
T ss_dssp             HHHHTEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS--CCCC
T ss_pred             cCcCCEEEE---ECCCCCCCHHHHHHHHHh-CCC--EEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC--CeeC
Confidence            456789999   7888  999999999986 998  66666643   678899999999999998887652111  1478


Q ss_pred             CceeEEEecccC
Q 048589          269 GKDVRVRRFVPK  280 (283)
Q Consensus       269 gk~iWaRky~pk  280 (283)
                      |+.+.+....++
T Consensus        97 g~~l~v~~~~~~  108 (216)
T 2qfj_A           97 GRNIKVGRPSNI  108 (216)
T ss_dssp             -CCCEEECCSCC
T ss_pred             CeeEEEecCCCc
Confidence            998888665443

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.80  E-value=6.6e-05  Score=60.55  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=57.4

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCC--c-------eeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGE--G-------CVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELM  263 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~--~-------cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~  263 (283)
                      ++.|++||   +|.|  ++++||+++|.+ ||.  +       .|.++.+   ++...||.|.|.+++.....+. .+. 
T Consensus         2 r~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~-~~~-   72 (172)
T 2g4b_A            2 GSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAMA-FDG-   72 (172)
T ss_dssp             CGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEE---ETTTTEEEEEESSHHHHHHHGG-GTT-
T ss_pred             CcccEEEE---cCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEe---cCCCCEEEEEeCCHHHHHHHHH-hCC-
Confidence            46799999   7888  999999999997 831  1       2555555   4557999999999999888883 222 


Q ss_pred             eEEEcCceeEEEecccC
Q 048589          264 QFNIHGKDVRVRRFVPK  280 (283)
Q Consensus       264 kf~Ingk~iWaRky~pk  280 (283)
                       ..++|+.+.++.-.++
T Consensus        73 -~~~~g~~i~v~~~~~~   88 (172)
T 2g4b_A           73 -IIFQGQSLKIRRPHDY   88 (172)
T ss_dssp             -CEETTEECEEECCSSC
T ss_pred             -cEecCceeeecCCccc
Confidence             2589999988765443

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=97.80  E-value=8.4e-05  Score=59.18  Aligned_cols=79  Identities=14%  Similarity=0.069  Sum_probs=58.8

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .|....++||   +|.|  ++++|++++|.+ || +  |..+.+.. .+..+||+|.|.+.+..+..+..-+.  ..++|
T Consensus        24 ~p~~~~~l~V---gnLp~~~te~dL~~~F~~-~G~~--v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng--~~l~G   94 (111)
T 2jvr_A           24 LPAKRYRITM---KNLPEGCSWQDLKDLARE-NSLE--TTFSSVNT-RDFDGTGALEFPSEEILVEALERLNN--IEFRG   94 (111)
T ss_dssp             -CCCCEEEEE---ECSSCCCCHHHHHHHHHH-HTCC--CSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTT--EEETT
T ss_pred             CCCCCCEEEE---ECCCCCCCHHHHHHHHHH-hCCe--eEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCC--CEECC
Confidence            3555677877   7888  999999999997 99 6  66776632 45789999999999987776642221  26899


Q ss_pred             ceeEEEecccC
Q 048589          270 KDVRVRRFVPK  280 (283)
Q Consensus       270 k~iWaRky~pk  280 (283)
                      +.+-++.-.++
T Consensus        95 r~i~V~~a~~~  105 (111)
T 2jvr_A           95 SVITVERDDNP  105 (111)
T ss_dssp             EEEEEEESCC-
T ss_pred             eEEEEEECCCC
Confidence            99988766543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.79  E-value=2.4e-05  Score=63.73  Aligned_cols=81  Identities=14%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..+.+.+++||   +|.|  ++++||+++|.+ ||. ... +.+.+  .+....||.|.|.+++..+..+.   .-...|
T Consensus         8 ~~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~g~-~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~   78 (175)
T 1fje_B            8 SESTTPFNLFI---GNLNPNKSVAELKVAISE-LFA-KND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE---LTGLKV   78 (175)
T ss_dssp             SSCSSSEEEEE---ECCCTTSCHHHHHHHHHH-HHH-HHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH---GGGEEE
T ss_pred             CCCCCCcEEEE---eCCCCCCCHHHHHHHHHH-hCC-cce-EEEEECCCCccccEEEEEECCHHHHHHHHh---cCCCEe
Confidence            35678899998   8888  899999999997 885 333 33333  68889999999999999888884   223478


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+-++...+++
T Consensus        79 ~g~~l~v~~~~~~~   92 (175)
T 1fje_B           79 FGNEIKLEKPKGRD   92 (175)
T ss_dssp             TTEEEEEECCCCSS
T ss_pred             CCeEEEEecCCCcc
Confidence            89999988877653

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.79  E-value=2.1e-05  Score=63.42  Aligned_cols=57  Identities=18%  Similarity=0.187  Sum_probs=46.6

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CC--CCCceEEEEecChHHHHHHhC
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CR--DQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~--~qplfariVf~s~~~vd~vL~  258 (283)
                      |.||+||   +|.|  ++++||+++|.+ ||+  |+.|.+-.   ++  +...||.|.|.+++.....+.
T Consensus         2 ~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~   65 (175)
T 3nmr_A            2 DAIKMFV---GQVPRTWSEKDLRELFEQ-YGA--VYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN   65 (175)
T ss_dssp             CCEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHH
T ss_pred             CceEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHH
Confidence            6789998   7888  999999999986 998  66665544   33  778999999999998776653

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=97.75  E-value=4.1e-05  Score=61.72  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=59.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee-------EEEeecCCCCCceEEEEecChHHHHHHhCCCCeee
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE-------DIKMGNCRDQSLYARVIVRSPAFITLILGENELMQ  264 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve-------~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~k  264 (283)
                      ....+++||   +|.|  +|+++|+++|.. ||. +..       .+.+.+.++...||+|.|.+.+.....+..-+.  
T Consensus        42 ~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng--  114 (143)
T 3egn_A           42 GEPNCRIYV---KNLAKHVQEKDLKYIFGR-YVD-FSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG--  114 (143)
T ss_dssp             CSCCSEEEE---EEECTTCCHHHHHHHHGG-GCC-TTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT--
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC--
Confidence            455688988   7887  999999999986 997 432       244444688899999999999987777552111  


Q ss_pred             EEEcCceeEEEecccC
Q 048589          265 FNIHGKDVRVRRFVPK  280 (283)
Q Consensus       265 f~Ingk~iWaRky~pk  280 (283)
                      ..|+|+.+-+....++
T Consensus       115 ~~~~g~~l~V~~a~~~  130 (143)
T 3egn_A          115 YVLFGKPMVVQFARSA  130 (143)
T ss_dssp             BEETTEECEEEECCCS
T ss_pred             CEeCCcEEEEEECCCC
Confidence            2479999977766544

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=97.75  E-value=8.9e-05  Score=65.21  Aligned_cols=78  Identities=21%  Similarity=0.265  Sum_probs=59.8

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+..||+||   +|.|  ++++||+    ++|.+ ||+  |+.|.+-+.++...||+|.|.+.+.....+..-+.  ..|
T Consensus         6 ~~~~~~l~V---~nlp~~~~~~~l~~~L~~~F~~-~G~--i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~   77 (282)
T 3pgw_A            6 TRPNHTIYI---NNLNEKIKKDELKKSLYAIFSQ-FGQ--ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPF   77 (282)
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHhc-cCC--eEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcC--Cee
Confidence            345789988   8888  9999977    89975 998  66777666678889999999999998877642211  367


Q ss_pred             cCceeEEEeccc
Q 048589          268 HGKDVRVRRFVP  279 (283)
Q Consensus       268 ngk~iWaRky~p  279 (283)
                      +|+.+-++...+
T Consensus        78 ~g~~l~v~~a~~   89 (282)
T 3pgw_A           78 YDKPMRIQYAKT   89 (282)
T ss_pred             CCcEEEEEEecc
Confidence            899887665433

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.75  E-value=3.2e-05  Score=59.80  Aligned_cols=60  Identities=13%  Similarity=0.228  Sum_probs=48.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhC
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~  258 (283)
                      ...+.+++||   +|.|  ++++||+++|.+ ||+  |+.+.+..  .++...||+|.|.+.+.....+.
T Consensus        21 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~   84 (114)
T 1x5o_A           21 QEQDPTNLYI---SNLPLSMDEQELENMLKP-FGQ--VISTRILRDSSGTSRGVGFARMESTEKCEAVIG   84 (114)
T ss_dssp             CCCCTTEEEE---ESCCTTCCHHHHHHTTTT-TSC--EEEEEEEECSSSCEEEEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence            3456789988   7888  999999999986 998  66666654  56778999999999998777654

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.75  E-value=5.3e-05  Score=63.34  Aligned_cols=79  Identities=11%  Similarity=0.245  Sum_probs=61.0

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ...+++||   +|.|  ++++||+++|.+ ||.  |+.|.+..   .++...||.|.|.+.+.....+..-+.  ..|+|
T Consensus       123 ~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g  194 (216)
T 2qfj_A          123 RAFNRIYV---ASVHQDLSDDDIKSVFEA-FGK--IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL--FDLGG  194 (216)
T ss_dssp             TTSCEEEE---ECCCTTCCHHHHHHHHTT-SSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBCSS
T ss_pred             CCCcEEEE---eCCCCcCCHHHHHHHHhc-cCC--eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC--CEeCC
Confidence            45689988   7777  999999999986 998  66666654   567789999999999987776652111  14799


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+=++...|++
T Consensus       195 ~~i~V~~a~~~~  206 (216)
T 2qfj_A          195 QYLRVGKAVTPP  206 (216)
T ss_dssp             SBCEEEECSSCS
T ss_pred             cEEEEEEecCCC
Confidence            999888877764

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=97.74  E-value=0.00012  Score=60.35  Aligned_cols=76  Identities=21%  Similarity=0.324  Sum_probs=56.7

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCC--c-------eeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGE--G-------CVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELM  263 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~--~-------cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~  263 (283)
                      +..||+||   +|.|  ++++||+++|.+ ||.  +       -|.++.+   ++...||.|.|.+++..+..|. .+  
T Consensus         2 ~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al~-l~--   71 (198)
T 2yh0_A            2 AMARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAMA-FD--   71 (198)
T ss_dssp             --CCEEEE---ESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHGG-GT--
T ss_pred             CceeEEEE---cCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHHH-hc--
Confidence            35689998   8888  999999999997 841  0       2455555   5568999999999999888883 22  


Q ss_pred             eEEEcCceeEEEecccC
Q 048589          264 QFNIHGKDVRVRRFVPK  280 (283)
Q Consensus       264 kf~Ingk~iWaRky~pk  280 (283)
                      ...|+|+.+-++...++
T Consensus        72 g~~~~g~~i~v~~~~~~   88 (198)
T 2yh0_A           72 GIIFQGQSLKIRRPHDY   88 (198)
T ss_dssp             TEEETTEEEEEECCCCC
T ss_pred             CCEEcCceEEEeCCCCC
Confidence            23589999988765544

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=97.74  E-value=7.4e-05  Score=63.89  Aligned_cols=78  Identities=17%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      ..+++||   +|.|  ++++||+++|.. ||+  |+.+.+ .+.+....||+|.|.+.+....++..-+-  ..|+|+.+
T Consensus       102 ~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~--i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng--~~~~g~~i  173 (213)
T 4f02_A          102 GVGNIFI---KNLDKSIDNKALYDTFSA-FGN--ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKV  173 (213)
T ss_dssp             CTTEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT--CEETTEEC
T ss_pred             ccccceE---CCcccccHHHHHHHHHhh-cCC--eEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC--CEECCEEE
Confidence            4568887   7888  999999999986 998  555544 44556789999999999997776542110  25899999


Q ss_pred             EEEecccCC
Q 048589          273 RVRRFVPKR  281 (283)
Q Consensus       273 WaRky~pk~  281 (283)
                      -+..+.||+
T Consensus       174 ~V~~a~~~~  182 (213)
T 4f02_A          174 FVGRFKSRK  182 (213)
T ss_dssp             EEEECCCHH
T ss_pred             EEEEcCCCc
Confidence            998887753

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.71  E-value=6.9e-05  Score=60.91  Aligned_cols=79  Identities=27%  Similarity=0.190  Sum_probs=63.4

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .....+++||   +|.|  ++++||+++|.+ ||+  |..+  ...++...||.|.|.+.+.....+..-+.  ..|+|+
T Consensus        95 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~g~--v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~  164 (175)
T 1fje_B           95 KVRAARTLLA---KNLSFNITEDELKEVFED-ALE--IRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGR  164 (175)
T ss_dssp             TTGGGGEEEE---ESCCSSCCHHHHHHHCTT-CSE--EEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTE--EEETTE
T ss_pred             ccccCCEEEE---eCCCCCCCHHHHHHHHHh-cCe--EEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCC--CEECCe
Confidence            3456789988   6877  999999999997 998  5555  34788899999999999998888763221  478999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-++-..||+
T Consensus       165 ~i~v~~a~~k~  175 (175)
T 1fje_B          165 SVSLYYTGEKG  175 (175)
T ss_dssp             EEEEEECSSCC
T ss_pred             EEEEEecCCCC
Confidence            99998887774

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=97.69  E-value=9.9e-05  Score=62.74  Aligned_cols=79  Identities=13%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .++..+|+||   +|.|  ++++||+++|.+ ||+  |+.|.+..  .++...||.|.|.+.+....++...+..  .|+
T Consensus        84 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~--~l~  155 (177)
T 2f3j_A           84 GVETGAKLLV---SNLDFGVSDADIQELFAE-FGT--LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV--PLD  155 (177)
T ss_dssp             SCTTCEEEEE---ECCCSCCCHHHHHHHHHH-TSC--CSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC--BCS
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC--EEC
Confidence            4556688988   7888  999999999997 998  67777754  5778899999999999887776532221  578


Q ss_pred             CceeEEEeccc
Q 048589          269 GKDVRVRRFVP  279 (283)
Q Consensus       269 gk~iWaRky~p  279 (283)
                      |+.+-+....+
T Consensus       156 Gr~l~V~~a~~  166 (177)
T 2f3j_A          156 GRPMDIQLVAS  166 (177)
T ss_dssp             SSBCEEEEESS
T ss_pred             CEEEEEEEecC
Confidence            98887665443

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.69  E-value=0.00019  Score=57.88  Aligned_cols=76  Identities=16%  Similarity=0.203  Sum_probs=57.9

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.+.+..   .++...||.|.|.+.+.....+..-+.  ..+
T Consensus        90 ~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~  161 (172)
T 2g4b_A           90 PLPGAHKLFI---GGLPNYLNDDQVKELLTS-FGP--LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQL  161 (172)
T ss_dssp             CCTTTTCEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT--CEE
T ss_pred             CCCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC--ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC--CEE
Confidence            3455789988   6887  999999999996 998  67776654   567789999999999987776652111  257


Q ss_pred             cCceeEEEe
Q 048589          268 HGKDVRVRR  276 (283)
Q Consensus       268 ngk~iWaRk  276 (283)
                      +|+.+-++.
T Consensus       162 ~g~~l~V~~  170 (172)
T 2g4b_A          162 GDKKLLVQR  170 (172)
T ss_dssp             TTEECEEEE
T ss_pred             CCeEEEEEe
Confidence            899886653

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.68  E-value=0.00023  Score=55.41  Aligned_cols=78  Identities=14%  Similarity=0.267  Sum_probs=57.9

Q ss_pred             CCCCCceEEEEccCCc--cC-----------CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh--
Q 048589          193 DADTDRTLFATFSKGH--PI-----------TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL--  257 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~--Pv-----------se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL--  257 (283)
                      -|...||+++.   +.  |-           .++||+++|.+ ||+  |+.|.|.+ ....+||+|.|.+++.....+  
T Consensus        11 ~~~~s~~l~l~---Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~--v~~v~i~~-~~~~G~afV~f~~~~~A~~Ai~~   83 (112)
T 2dit_A           11 RMRHERVVIIK---NMFHPMDFEDDPLVLNEIREDLRVECSK-FGQ--IRKLLLFD-RHPDGVASVSFRDPEEADYCIQT   83 (112)
T ss_dssp             CCCSCCEEEEE---SSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSC--CSEEEEET-TCTTCEEEEECSCHHHHHHHHHH
T ss_pred             CCCCceEEEEE---cCCCHHHhccCHHHHHHHHHHHHHHHHc-cCC--EeEEEEec-CCCCEEEEEEECCHHHHHHHHHH
Confidence            45567888773   32  21           26899999985 998  66677754 447899999999998866655  


Q ss_pred             -CCCCeeeEEEcCceeEEEecccCCC
Q 048589          258 -GENELMQFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       258 -~g~~~~kf~Ingk~iWaRky~pk~~  282 (283)
                       +|.     .++||.+-+..+.|+..
T Consensus        84 lng~-----~~~gr~l~v~~a~~~~~  104 (112)
T 2dit_A           84 LDGR-----WFGGRQITAQAWDGTTD  104 (112)
T ss_dssp             STTC-----EETTEECEEEECCSCCC
T ss_pred             cCCC-----EECCcEEEEEEeCCCCC
Confidence             453     57999999998888653

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=97.68  E-value=9.7e-05  Score=58.76  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=57.0

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .+.+.+++||   +|.|  ++++||+++|.+ ||+  |+.+.+..   .+.+..||.|.|.+.+....++..-+..  .+
T Consensus        83 ~~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~  154 (166)
T 3md3_A           83 SSDDTFNLFV---GDLNVNVDDETLRNAFKD-FPS--YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DL  154 (166)
T ss_dssp             CCTTCEEEEE---ESCCTTCCHHHHHHHHTT-STT--EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EE
T ss_pred             CCCCCceEEE---CCCCCCCCHHHHHHHHhc-cCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--cc
Confidence            3556788888   6877  999999999975 998  66666653   6778899999999999987776521111  47


Q ss_pred             cCceeEEE
Q 048589          268 HGKDVRVR  275 (283)
Q Consensus       268 ngk~iWaR  275 (283)
                      +|+.+-+.
T Consensus       155 ~g~~i~v~  162 (166)
T 3md3_A          155 NGRPLRIN  162 (166)
T ss_dssp             TTEECEEE
T ss_pred             CCcEEEEE
Confidence            99998654

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.67  E-value=0.00014  Score=64.22  Aligned_cols=76  Identities=11%  Similarity=0.229  Sum_probs=55.7

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+.+.||+||   +|.|  ++++||+++|.+ ||.  |+.|.|-. .+....||.|.|.+++.....+. .+  ...++
T Consensus        36 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~--~~~~~  106 (292)
T 2ghp_A           36 TRNRELTTVLV---KNLPKSYNQNKVYKYFKH-CGP--IIHVDVADSLKKNFRFARIEFARYDGALAAIT-KT--HKVVG  106 (292)
T ss_dssp             ------CEEEE---EEECTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TT--TCEET
T ss_pred             ccCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hC--CcEeC
Confidence            34667899998   7888  999999999997 998  66666644 44457999999999999888884 21  23678


Q ss_pred             CceeEEEe
Q 048589          269 GKDVRVRR  276 (283)
Q Consensus       269 gk~iWaRk  276 (283)
                      |+.+.+..
T Consensus       107 g~~i~v~~  114 (292)
T 2ghp_A          107 QNEIIVSH  114 (292)
T ss_dssp             TEECEEEE
T ss_pred             CcEEEEEE
Confidence            98887754

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=97.64  E-value=8.2e-05  Score=65.71  Aligned_cols=77  Identities=19%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhC--CceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYG--EGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G--~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      +.++|||   ++.|  +|++||+++|.+ ||  . +++...+.+  +++...||+|.|.+.+....++...+.  ..|+|
T Consensus        67 ~~~~lfV---gnL~~~~te~~L~~~F~~-~G~~~-v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng--~~~~G  139 (229)
T 3q2s_C           67 KRIALYI---GNLTWWTTDEDLTEAVHS-LGVND-ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHG  139 (229)
T ss_dssp             --CEEEE---ESCCTTCCHHHHHHHHHT-TTCCC-EEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT--SCBTT
T ss_pred             CccEEEE---eCCCCCCCHHHHHHHHHH-HCCcc-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CeECC
Confidence            5667877   7888  999999999975 99  7 444334444  788899999999999998888763221  14789


Q ss_pred             ceeEEEeccc
Q 048589          270 KDVRVRRFVP  279 (283)
Q Consensus       270 k~iWaRky~p  279 (283)
                      +.|-++...|
T Consensus       140 r~l~V~~a~~  149 (229)
T 3q2s_C          140 QNPVVTPVNK  149 (229)
T ss_dssp             BCCEEEECCH
T ss_pred             EEeEEEECCC
Confidence            9998876544

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00012  Score=55.11  Aligned_cols=71  Identities=17%  Similarity=0.379  Sum_probs=54.3

Q ss_pred             CCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I  267 (283)
                      .++.+++||   +|.|   ++++||+++|.+ ||+  |+.|.+.     ..||.|.|.+.+....++.   |.     .+
T Consensus         7 ~~~~~~l~V---~nlp~~~~t~~~l~~~F~~-~G~--v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~-----~~   70 (96)
T 2kvi_A            7 IPPKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH--IMQINIK-----NAFGFIQFDNPQSVRDAIECESQE-----MN   70 (96)
T ss_dssp             --CCEEEEE---ESSTTSCCCHHHHHHHHTT-TCC--CCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCS-----SC
T ss_pred             CCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC--EEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCC-----ee
Confidence            456789998   6776   699999999997 998  7788883     5799999999998777665   43     36


Q ss_pred             cCceeEEEecccC
Q 048589          268 HGKDVRVRRFVPK  280 (283)
Q Consensus       268 ngk~iWaRky~pk  280 (283)
                      +|+.+-++...++
T Consensus        71 ~g~~l~V~~a~~~   83 (96)
T 2kvi_A           71 FGKKLILEVSSSN   83 (96)
T ss_dssp             BTTTBCEEEEECC
T ss_pred             CCcEEEEEEcCcC
Confidence            7888866655444

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=97.59  E-value=3.4e-05  Score=63.83  Aligned_cols=79  Identities=13%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..+++.+++||   +|.|  +||+||++||.+ ||.  + .|.+- + .++...||.|.|.+++..+..|. .+  .-.|
T Consensus        41 ~~~~~~~~lfV---~nLp~~~te~dL~~~F~~-~Gi--~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~-~~--g~~l  110 (139)
T 2hgn_A           41 VQSTTGHCVHM---RGLPYKATENDIYNFFSP-LNP--V-RVHIEIGPDGRVTGEADVEFATHEEAVAAMS-KD--RANM  110 (139)
T ss_dssp             ----CCCCEEC---CSCCTTCCHHHHHHHHCS-CCC--S-EEECCCSSSSCSSCCCEEECSHHHHHHHHTT-CC--SCSS
T ss_pred             CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--e-EEEEEECCCCCCceEEEEEeCCHHHHHHHHh-hC--CCEE
Confidence            34567788887   8999  999999999997 995  3 45443 3 67888999999999999988883 22  2357


Q ss_pred             cCceeEEEecccC
Q 048589          268 HGKDVRVRRFVPK  280 (283)
Q Consensus       268 ngk~iWaRky~pk  280 (283)
                      +||.|-+..-.++
T Consensus       111 ~gR~i~V~~a~~~  123 (139)
T 2hgn_A          111 QHRYIELFLNSTT  123 (139)
T ss_dssp             SSCCCCCEECCCS
T ss_pred             CCEEEEEEECCCC
Confidence            8887766555444

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.57  E-value=0.00031  Score=62.02  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             CCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeec--C--CCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589          193 DADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGN--C--RDQSLYARVIVRSPAFITLILGENELMQF  265 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~--~--~~qplfariVf~s~~~vd~vL~g~~~~kf  265 (283)
                      .....+++||   +|.|   +++++|+++|.+ ||.  |+.|.+-.  .  +.+..||.|.|.+.+....++ .-+.  .
T Consensus       206 ~~~~~~~l~v---~nlp~~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g--~  276 (292)
T 2ghp_A          206 ATLEGREIMI---RNLSTELLDENLLRESFEG-FGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR--S  276 (292)
T ss_dssp             -CCTTTEEEE---EEECTTTCCHHHHHHHHGG-GSC--EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT--E
T ss_pred             cCCCCceEEE---ECCCcccCCHHHHHHHHhc-cCC--eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC--C
Confidence            3456789988   6777   899999999996 998  77777765  3  778899999999999988777 3332  2


Q ss_pred             EEcCceeEEEecccCC
Q 048589          266 NIHGKDVRVRRFVPKR  281 (283)
Q Consensus       266 ~Ingk~iWaRky~pk~  281 (283)
                      .|+|+.+-+....||.
T Consensus       277 ~~~g~~i~V~~a~~k~  292 (292)
T 2ghp_A          277 LLGNREISVSLADKKP  292 (292)
T ss_dssp             EETTEEEEEEECCCCC
T ss_pred             EECCcEEEEEEecCCC
Confidence            5899999999888874

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.56  E-value=3.2e-05  Score=62.20  Aligned_cols=79  Identities=10%  Similarity=0.142  Sum_probs=56.4

Q ss_pred             CCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          194 ADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+..+++||   ++.|   ++++||+++|.+ ||+  |.+|.|-   +...||+|.|.+++.....+...+.-...|+||
T Consensus        22 ~~p~~~l~V---~NLp~~~~te~~L~~lF~~-fG~--V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr   92 (112)
T 1x4f_A           22 QELGRVIHL---SNLPHSGYSDSAVLKLAEP-YGK--IKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR   92 (112)
T ss_dssp             SCCCCEEEE---ESCCCSSCCSHHHHTTTTT-TSC--CSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred             CCCCCEEEE---eCCCCccCCHHHHHHHHHh-cCC--EEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence            344689988   6766   689999999986 998  6677773   347899999999887666654221112357899


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+.+..-.+++
T Consensus        93 ~l~V~~a~~~~  103 (112)
T 1x4f_A           93 CVKVDLSEKYK  103 (112)
T ss_dssp             CCEEEEECSCS
T ss_pred             EEEEEECcccc
Confidence            98766555443

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.56  E-value=0.00011  Score=57.42  Aligned_cols=67  Identities=19%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ingk  270 (283)
                      +.+++||   ++.|  ++++||+++|.+ ||.  |++|.|.   ....||+|.|.+.+.....+   +|..     ++|+
T Consensus         9 ~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~-----~~g~   74 (111)
T 1whx_A            9 SKTVILA---KNLPAGTLAAEIQETFSR-FGS--LGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSK-----FHHV   74 (111)
T ss_dssp             EEEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCB-----SSSS
T ss_pred             CCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCE-----ECCe
Confidence            4678887   7777  999999999996 999  7888884   35679999999998876654   5543     7888


Q ss_pred             ee---EEEe
Q 048589          271 DV---RVRR  276 (283)
Q Consensus       271 ~i---WaRk  276 (283)
                      ++   ||+.
T Consensus        75 ~l~V~~a~~   83 (111)
T 1whx_A           75 PLYLEWAPI   83 (111)
T ss_dssp             BCEEEEEET
T ss_pred             EEEEEECCC
Confidence            88   5543

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=0.0007  Score=52.99  Aligned_cols=75  Identities=12%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             CceEEEEccCCc------cCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          197 DRTLFATFSKGH------PITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       197 ~RT~FvTFS~G~------Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+.+-|.+....      -+++++|+++|.+ ||+  |+.|.|-  ++...||+|.|.+.+.....+....    .+.|+
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~-~G~--V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~----~~~g~   80 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQK-YGE--VLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV----GLVDN   80 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHT-TSC--EEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC----BCSSS
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHh-cCC--EEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC----CCCCC
Confidence            456667776532      3999999999996 999  7777773  5778999999999988777776422    24577


Q ss_pred             eeEEEecccC
Q 048589          271 DVRVRRFVPK  280 (283)
Q Consensus       271 ~iWaRky~pk  280 (283)
                      .+=++-..++
T Consensus        81 ~l~V~~a~~~   90 (100)
T 2d9o_A           81 PLKISWLEGQ   90 (100)
T ss_dssp             BCEEECSSCC
T ss_pred             eEEEEEccCC
Confidence            7655444333

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.50  E-value=0.00041  Score=67.00  Aligned_cols=79  Identities=22%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ....+||||   +|.|  +|+++|.++|.. ||.  |+.|.|- +  ++....||+|.|.+++.+..+|...+-  ..|+
T Consensus        99 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~i~  170 (437)
T 3pgw_S           99 GDAFKTLFV---ARVNYDTTESKLRREFEV-YGP--IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG--KKID  170 (437)
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC--eeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC--CEEC
Confidence            445689988   7887  999999999997 998  5555553 3  688899999999999998877743221  2579


Q ss_pred             CceeEEEecccC
Q 048589          269 GKDVRVRRFVPK  280 (283)
Q Consensus       269 gk~iWaRky~pk  280 (283)
                      |+.|-+..-.|+
T Consensus       171 gr~i~V~~a~~~  182 (437)
T 3pgw_S          171 GRRVLVDVERGR  182 (437)
T ss_pred             CEEEEEEEeCCC
Confidence            999977665554

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=97.50  E-value=0.00033  Score=61.60  Aligned_cols=71  Identities=13%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc-Cc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH-GK  270 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In-gk  270 (283)
                      .+..+|+||   +|.|  ++++||+++|.+ ||+  |++|.+..  ....||.|.|.+.+.....+..-+-  ..|+ |+
T Consensus       204 ~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~--i~~v~~~~--~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~  273 (282)
T 3pgw_A          204 NPPNHILFL---TNLPEETNELMLSMLFNQ-FPG--FKEVRLVP--GRHDIAFVEFDNEVQAGAARDALQG--FKITQNN  273 (282)
T ss_pred             CCCCCEEEE---eCCCCcCCHHHHHHHHHh-cCC--eEEEEEec--CCCcEEEEEeCCHHHHHHHHHHcCC--cEeCCCC
Confidence            445789988   7887  999999999996 998  77777753  2247999999999987776552221  3566 88


Q ss_pred             eeEE
Q 048589          271 DVRV  274 (283)
Q Consensus       271 ~iWa  274 (283)
                      .+-+
T Consensus       274 ~l~v  277 (282)
T 3pgw_A          274 AMKI  277 (282)
T ss_pred             EEEE
Confidence            7733

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=97.49  E-value=0.00028  Score=60.90  Aligned_cols=78  Identities=21%  Similarity=0.271  Sum_probs=58.5

Q ss_pred             CCCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          192 NDADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ..+++.+|+||   +|.|   ++++||+++|.+ ||+  |+.|.+..  ....||.|.|.+++.....+...+.  ..++
T Consensus        29 ~~~~~~~~l~V---~nLp~~~~te~~L~~~F~~-~G~--i~~v~i~~--~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~   98 (229)
T 2adc_A           29 LAGAGNSVLLV---SNLNPERVTPQSLFILFGV-YGD--VQRVKILF--NKKENALVQMADGNQAQLAMSHLNG--HKLH   98 (229)
T ss_dssp             GGCCCCSEEEE---ESCCTTTCCHHHHHHHHHH-HTC--EEEEEECC--TTSCCEEEEESCHHHHHHHHHHHTT--CBCS
T ss_pred             CCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-CCC--eEEEEEEE--CCCCEEEEEECCHHHHHHHHHHhCC--CeEC
Confidence            44567899999   6876   699999999986 998  77777744  2378999999999998876642111  2468


Q ss_pred             CceeEEEeccc
Q 048589          269 GKDVRVRRFVP  279 (283)
Q Consensus       269 gk~iWaRky~p  279 (283)
                      |+.+-+....+
T Consensus        99 g~~l~v~~a~~  109 (229)
T 2adc_A           99 GKPIRITLSKH  109 (229)
T ss_dssp             SSBCEEECCSC
T ss_pred             CeEEEEEEecC
Confidence            99988875554

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=97.44  E-value=0.00016  Score=56.64  Aligned_cols=61  Identities=11%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~Ingk  270 (283)
                      ...++||   +|.|  ++++||+++|.+ ||+  |+.+.|...    .||+|.|.+++.....+.   |.     .|+|+
T Consensus        15 ~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~-----~~~gr   79 (115)
T 3beg_B           15 SENRVVV---SGLPPSGSWQDLKDHMRE-AGD--VCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNT-----KFRSH   79 (115)
T ss_dssp             --CCEEE---EECCSSCCTTHHHHHHGG-GSC--EEEEEECTT----SEEEEEESSHHHHHHHHHHHTTC-----BCCCT
T ss_pred             CCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEecC----CEEEEEECCHHHHHHHHHHhCCC-----EECCc
Confidence            4567777   7877  999999999996 998  677777432    899999999888666554   53     46777


Q ss_pred             e
Q 048589          271 D  271 (283)
Q Consensus       271 ~  271 (283)
                      .
T Consensus        80 ~   80 (115)
T 3beg_B           80 E   80 (115)
T ss_dssp             T
T ss_pred             E
Confidence            6

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.41  E-value=0.0002  Score=63.08  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             CCCceEEEEccCCcc--C-CHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhC---CCCeeeEE
Q 048589          195 DTDRTLFATFSKGHP--I-TRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILG---ENELMQFN  266 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--v-se~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~---g~~~~kf~  266 (283)
                      ...+++||   +|.|  + ++++|+++|.. ||.  |+.+.+. + .+....||.|.|.+.+.....+.   |.     .
T Consensus       182 ~~~~~l~v---~nlp~~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~  250 (284)
T 3smz_A          182 LHSRCLCV---DRLPPGFNDVDALCRALSA-VHS--PTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL-----S  250 (284)
T ss_dssp             TSCSEEEE---ECCCTTCCCHHHHHHHTCS-SSC--CSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC-----E
T ss_pred             CCccEEEE---ecCCcccCCHHHHHHHhhC-CCC--eEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----c
Confidence            45688887   8888  5 89999999996 998  5555544 3 67788999999999998777654   53     4


Q ss_pred             EcCceeEEEecccCCC
Q 048589          267 IHGKDVRVRRFVPKRA  282 (283)
Q Consensus       267 Ingk~iWaRky~pk~~  282 (283)
                      ++|+.+-+....|+..
T Consensus       251 ~~g~~l~v~~a~~~~~  266 (284)
T 3smz_A          251 LGGSHLRVSFCAPGPP  266 (284)
T ss_dssp             ETTEECEEEECCSSSC
T ss_pred             cCCeEEEEEEecCCCc
Confidence            6999999998888753

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=97.39  E-value=0.00016  Score=57.96  Aligned_cols=71  Identities=20%  Similarity=0.212  Sum_probs=53.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhC---CCCeeeE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILG---ENELMQF  265 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~---g~~~~kf  265 (283)
                      +...+++||   +|.|  ++++||+++|.+ ||+  |+.+.+..   .++...||.|.|.+.+.....+.   |.     
T Consensus        86 ~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----  154 (168)
T 1b7f_A           86 SIKDTNLYV---TNLPRTITDDQLDTIFGK-YGS--IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-----  154 (168)
T ss_dssp             TTTTCEEEE---ESCCTTCCHHHHHHHHTS-SSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred             cCCCCCEEE---eCCCCCCCHHHHHHhhhc-CCc--EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-----
Confidence            445688988   6777  999999999986 998  77776654   56778999999999998777654   53     


Q ss_pred             EEcC--ceeEEE
Q 048589          266 NIHG--KDVRVR  275 (283)
Q Consensus       266 ~Ing--k~iWaR  275 (283)
                      .++|  +.+-++
T Consensus       155 ~~~g~~~~l~V~  166 (168)
T 1b7f_A          155 IPEGGSQPLSVR  166 (168)
T ss_dssp             CCTTCSSCCEEE
T ss_pred             EecCCCeEEEEE
Confidence            3555  665443

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=97.38  E-value=0.00051  Score=60.57  Aligned_cols=74  Identities=18%  Similarity=0.322  Sum_probs=58.0

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFN  266 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~  266 (283)
                      ..+.+.+|+||   +|.|  +|++||+++|.. ||+  |..|.|-   +...||.|.|.+.+.....+.   |.     .
T Consensus        17 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~-----~   82 (261)
T 3sde_A           17 KTYTQRCRLFV---GNLPTDITEEDFKRLFER-YGE--PSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGT-----I   82 (261)
T ss_dssp             CSSCGGGEEEE---ESCCTTCCHHHHHHHTGG-GCC--CSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTC-----E
T ss_pred             CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCc-----E
Confidence            34567789999   7888  999999999975 998  7777773   346899999999999887754   43     4


Q ss_pred             EcCceeEEEeccc
Q 048589          267 IHGKDVRVRRFVP  279 (283)
Q Consensus       267 Ingk~iWaRky~p  279 (283)
                      |+|+.+-++...|
T Consensus        83 i~g~~l~v~~a~~   95 (261)
T 3sde_A           83 LKSRPLRIRFATH   95 (261)
T ss_dssp             ETTEECEEEECCC
T ss_pred             ECCceeEeeeccc
Confidence            7888887765443

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.37  E-value=0.0003  Score=56.48  Aligned_cols=59  Identities=20%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~  258 (283)
                      +...+++||   +|.|  ++++||+++|.+ ||+  |++|.+..  .++...||.|.|.+.+.....+.
T Consensus        92 ~~~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~--i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~  154 (175)
T 3nmr_A           92 AVEDRKLFI---GMISKKCTENDIRVMFSS-FGQ--IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK  154 (175)
T ss_dssp             CGGGSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred             cCCCCeEEE---cCCCCcCCHHHHHHHHHh-CCC--EEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence            446789988   7887  999999999986 998  67776654  56678899999999998777663

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.34  E-value=0.00052  Score=60.36  Aligned_cols=80  Identities=13%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +..++++||   +|.|  ++++||+++|.. ||+  |+.+.+- +  .+...+||.|.|.+.+.....+..-+.  ..|+
T Consensus        92 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~--~~~~  163 (284)
T 3smz_A           92 QPTDALLCV---ANLPPSLTQQQFEELVRP-FGS--LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG--KPLG  163 (284)
T ss_dssp             CCCSCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred             cCCCCEEEE---cCCCCcCCHHHHHHHHHh-cCC--eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence            345578988   7887  999999999997 998  6665443 3  677889999999999998877632111  2679


Q ss_pred             CceeEEEecccCC
Q 048589          269 GKDVRVRRFVPKR  281 (283)
Q Consensus       269 gk~iWaRky~pk~  281 (283)
                      |+.+-++...|+.
T Consensus       164 g~~i~v~~a~~~~  176 (284)
T 3smz_A          164 PRTLYVHWTDAGQ  176 (284)
T ss_dssp             TEECEEEECCGGG
T ss_pred             CcEEEEEECCCCC
Confidence            9999887776654

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.31  E-value=0.00029  Score=52.24  Aligned_cols=72  Identities=14%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      +...+++||   +|.|  ++++|++++|.+ | +  |+.+.+.   +...||+|.|.+++..+..+...+.  ..++|+.
T Consensus         2 s~~~~~l~V---~nLp~~~t~~~l~~~F~~-~-~--v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~   69 (88)
T 1wg1_A            2 SSGSSGILV---KNLPQDSNCQEVHDLLKD-Y-D--LKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQ--YSFRGKD   69 (88)
T ss_dssp             CCCCCCEEE---ESCCSSCCHHHHHHHTCS-S-C--CCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTT--EEETTEE
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHhh-C-C--eEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCC--CeECCcE
Confidence            345689988   8888  999999999997 6 6  6666662   5678999999999987777652221  2578998


Q ss_pred             eEEEec
Q 048589          272 VRVRRF  277 (283)
Q Consensus       272 iWaRky  277 (283)
                      +-++.-
T Consensus        70 l~V~~a   75 (88)
T 1wg1_A           70 LIVQLQ   75 (88)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            876643

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.22  E-value=0.00049  Score=57.19  Aligned_cols=71  Identities=23%  Similarity=0.343  Sum_probs=55.2

Q ss_pred             CCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEEcC
Q 048589          196 TDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNIHG  269 (283)
Q Consensus       196 d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~Ing  269 (283)
                      +.+|+||   +|.|   ++++||+++|.+ ||+  |+.|.+..  ....||.|.|.+++.....+.   |.     .++|
T Consensus         2 ~~~~l~v---~nlp~~~~~~~~l~~~F~~-~G~--i~~v~i~~--~~~g~afV~f~~~~~a~~A~~~l~~~-----~~~g   68 (198)
T 1qm9_A            2 GNSVLLV---SNLNPERVTPQSLFILFGV-YGD--VQRVKILF--NKKENALVQMADGNQAQLAMSHLNGH-----KLHG   68 (198)
T ss_dssp             CCCEEEE---ECCCSSSCCHHHHHHHHHT-TCC--CSEEECST--TCSSCCEEECTTTHHHHHHHHHHTTC-----CCSS
T ss_pred             CCcEEEE---eCCCcccCCHHHHHHHHHh-cCC--EEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCC-----eecC
Confidence            5689988   7877   599999999986 998  77777744  237799999999999877654   53     3689


Q ss_pred             ceeEEEeccc
Q 048589          270 KDVRVRRFVP  279 (283)
Q Consensus       270 k~iWaRky~p  279 (283)
                      +.+-+....+
T Consensus        69 ~~l~v~~a~~   78 (198)
T 1qm9_A           69 KPIRITLSKH   78 (198)
T ss_dssp             CCCEEEECCC
T ss_pred             eEEEEEEecC
Confidence            9887765443

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=97.20  E-value=0.00041  Score=61.14  Aligned_cols=79  Identities=14%  Similarity=0.086  Sum_probs=58.2

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhCC--CCeeeEEEcC
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILGE--NELMQFNIHG  269 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~g--~~~~kf~Ing  269 (283)
                      +.+++||   +|.|  +|+++|+++|.. ||+  |+.|.+- + .+....||+|.|.+.+.....+..  .....+...|
T Consensus        95 ~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~  168 (261)
T 3sde_A           95 HGAALTV---KNLSPVVSNELLEQAFSQ-FGP--VEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP  168 (261)
T ss_dssp             CSSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred             cCCcccc---cCCCCCCCHHHHHHHHHh-cCC--eEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence            4578887   6777  999999999975 998  5555554 3 678899999999999997777764  2323333458


Q ss_pred             ceeEEEecccC
Q 048589          270 KDVRVRRFVPK  280 (283)
Q Consensus       270 k~iWaRky~pk  280 (283)
                      +.+.+....++
T Consensus       169 r~i~v~~~~~~  179 (261)
T 3sde_A          169 RPVIVEPMEQF  179 (261)
T ss_dssp             CBCEEEECCCE
T ss_pred             ceEEEeecccc
Confidence            88877665543

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=97.12  E-value=0.0019  Score=53.30  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             CCCCCCceEEEEccC-CccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCce-EEEEecChHHHHHH---hCCCC
Q 048589          192 NDADTDRTLFATFSK-GHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLY-ARVIVRSPAFITLI---LGENE  261 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~-G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplf-ariVf~s~~~vd~v---L~g~~  261 (283)
                      ..+...+.++|...+ .|++|++++++.|.+ ||.  |++|.|-+  +...| |+|.|.+++.....   |+|..
T Consensus        21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~-yG~--V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~   90 (130)
T 3zzy_A           21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSK-FGT--VLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQN   90 (130)
T ss_dssp             ----CCSEEEEEEESCCSCCCHHHHHHHHTT-SSC--EEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred             ccCCCCceEEEEECCCCCCCCHHHHHHHHhC-cCC--EEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCe
Confidence            334456788777666 678999999999997 999  77777754  23567 99999998765444   66754

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.11  E-value=0.002  Score=51.95  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=44.1

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCC
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENE  261 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~  261 (283)
                      ..+++||. -.|.|  ++|++++++|.+ ||+  |++|.|..   ...||+|.|.+++.....   |+|..
T Consensus        24 pt~~L~V~-Ng~L~~~~te~~L~~~F~~-fG~--v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~   87 (114)
T 2cq2_A           24 ATQSLVVA-NGGLGNGVSRNQLLPVLEK-CGL--VDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKE   87 (114)
T ss_dssp             CCSEEEEE-TCTGGGTCCHHHHHHHHHH-HSC--EEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred             CCCEEEEE-CCCCCCCCCHHHHHHHHHh-cCC--eEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence            35788885 13344  999999999997 998  78888843   367999999998765554   45643

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=97.07  E-value=0.0011  Score=52.51  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=51.1

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQFN  266 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~kf~  266 (283)
                      ...+++||   +|.|  ++++||+++|.+ ||+  |+.+.+..   .++...||.|.|.+.+.....+   +|.     .
T Consensus        86 ~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~  154 (167)
T 1fxl_A           86 IRDANLYV---SGLPKTMTQKELEQLFSQ-YGR--IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-----K  154 (167)
T ss_dssp             GTTCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----C
T ss_pred             CCCCcEEE---CCCCCcCCHHHHHHHHHh-cCC--EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-----c
Confidence            45678888   6887  999999999996 998  66666643   5677899999999999877765   454     3


Q ss_pred             EcCce
Q 048589          267 IHGKD  271 (283)
Q Consensus       267 Ingk~  271 (283)
                      ++|+.
T Consensus       155 ~~g~~  159 (167)
T 1fxl_A          155 PSGAT  159 (167)
T ss_dssp             CTTCS
T ss_pred             cCCCc
Confidence            67754

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.01  E-value=0.0026  Score=54.80  Aligned_cols=68  Identities=22%  Similarity=0.301  Sum_probs=52.9

Q ss_pred             CCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcC
Q 048589          196 TDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENELMQFNIHG  269 (283)
Q Consensus       196 d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ing  269 (283)
                      +.+|+||   ++.|   +++++++++|.. ||+  |.+|.+-.  ....||.|.|.+++..+..   |+|.     .++|
T Consensus         3 ~~~~l~V---~nL~~~~~~~~~L~~~F~~-~G~--v~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~lng~-----~~~g   69 (205)
T 3tyt_A            3 DSPVLMV---YGLDQSKMNCDRVFNVFCL-YGN--VEKVKFMK--SKPGAAMVEMADGYAVDRAITHLNNN-----FMFG   69 (205)
T ss_dssp             CCSEEEE---ECCCTTTCCHHHHHHHHTT-TSC--EEEEEECT--TSTTCEEEEESSHHHHHHHHHHHTTC-----EETT
T ss_pred             CCCEEEE---eCCCcccCCHHHHHHHHHh-cCC--eEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCC-----EECC
Confidence            4578888   7887   899999999986 999  67776633  3478999999999886655   5663     4788


Q ss_pred             ceeEEEe
Q 048589          270 KDVRVRR  276 (283)
Q Consensus       270 k~iWaRk  276 (283)
                      |.+-+..
T Consensus        70 ~~l~v~~   76 (205)
T 3tyt_A           70 QKMNVCV   76 (205)
T ss_dssp             EECEEEE
T ss_pred             ceEEEEE
Confidence            8886663

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=97.00  E-value=0.0025  Score=54.64  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             CCCCceEEEEccC-CccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCC
Q 048589          194 ADTDRTLFATFSK-GHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENE  261 (283)
Q Consensus       194 ~~d~RT~FvTFS~-G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~  261 (283)
                      ++..+.+.|...+ .+++++++++++|.+ ||+  |++|.|-+ .+...||+|.|.+++.....   |+|..
T Consensus        41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~-fG~--V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~  108 (164)
T 1sjr_A           41 AGQSPVLRIIVENLFYPVTLDVLHQIFSK-FGT--VLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQN  108 (164)
T ss_dssp             CCCCCEEEEEECSCCSCCCHHHHHHHHHH-HSC--EEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBC
T ss_pred             CCCCceEEEEEeCcCCCCCHHHHHHHHHh-cCC--EEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence            4455555444443 566999999999996 999  78888754 33567999999998765444   55654

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=96.87  E-value=0.0024  Score=52.96  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=54.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I  267 (283)
                      .+..+|+||   +|.|  +++++|+++|.+ || .  |+.|.+-.  ....||.|.|.+.+....++.   |..     |
T Consensus       117 ~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~~--v~~v~i~~--~~~g~afV~f~~~~~A~~A~~~l~g~~-----~  183 (198)
T 1qm9_A          117 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV--VKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHD-----L  183 (198)
T ss_dssp             CCCCCEEEE---CCCCTTCCHHHHHHHHHH-TTSC--CCEEEESS--TTSSCEEEECSSHHHHHHHHHHHTSSC-----C
T ss_pred             CCCccEEEE---eCCCCCCCHHHHHHHHHH-cCCC--ceEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCc-----c
Confidence            345789988   7888  999999999997 99 7  77777632  236799999999998777654   533     5


Q ss_pred             c-CceeEEEeccc
Q 048589          268 H-GKDVRVRRFVP  279 (283)
Q Consensus       268 n-gk~iWaRky~p  279 (283)
                      + |+.+-+.--.|
T Consensus       184 ~~g~~l~v~~a~~  196 (198)
T 1qm9_A          184 GENHHLRVSFSKS  196 (198)
T ss_dssp             SSCCSCCEEEECC
T ss_pred             CCCCeEEEEeecc
Confidence            7 88876654433

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=96.82  E-value=0.00093  Score=60.37  Aligned_cols=59  Identities=15%  Similarity=0.293  Sum_probs=46.4

Q ss_pred             CCCCceEEEEccCCcc--C---------CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCC
Q 048589          194 ADTDRTLFATFSKGHP--I---------TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGE  259 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--v---------se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g  259 (283)
                      ..+.|||||   +|.|  +         +|++|+++|.+ ||+  |++|.|-.   ...||+|.|.+.+.....   |+|
T Consensus       131 ~~~~rtLfV---gnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~--I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g  201 (240)
T 3u1l_A          131 RKKNKTLYV---GGIDGALNSKHLKPAQIESRIRFVFSR-LGD--IDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSN  201 (240)
T ss_dssp             CCCCCEEEE---ECTTGGGTTCCCCHHHHHHHHHHHHHT-TSC--EEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTT
T ss_pred             ccCCceeec---CCCChhhhcccccccCcHHHHHHHHHc-cCC--EEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCC
Confidence            457899999   6777  4         69999999997 999  88887743   468999999998876554   556


Q ss_pred             CC
Q 048589          260 NE  261 (283)
Q Consensus       260 ~~  261 (283)
                      ..
T Consensus       202 ~~  203 (240)
T 3u1l_A          202 QT  203 (240)
T ss_dssp             CC
T ss_pred             CE
Confidence            44

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.78  E-value=0.018  Score=46.71  Aligned_cols=62  Identities=19%  Similarity=0.192  Sum_probs=45.1

Q ss_pred             CCCCceEEEEccC-CccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCce-EEEEecChHHHH---HHhCCCC
Q 048589          194 ADTDRTLFATFSK-GHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLY-ARVIVRSPAFIT---LILGENE  261 (283)
Q Consensus       194 ~~d~RT~FvTFS~-G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplf-ariVf~s~~~vd---~vL~g~~  261 (283)
                      ++..++++|...+ .++++++++++.|.+ ||+  |++|.|-+  + ++| |+|.|.+++...   .-|+|..
T Consensus        20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~-yG~--V~~v~i~~--~-~Gf~aFVef~~~~~A~~A~~~LnG~~   86 (124)
T 2e5i_A           20 SGGNKVLLLSIQNPLYPITVDVLYTVCNP-VGK--VQRIVIFK--R-NGIQAMVEFESVLCAQKAKAALNGAD   86 (124)
T ss_dssp             CCCCSEEEEEEESCCSCCCHHHHHHHHTT-TSC--EEEEEEEE--S-SSEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred             CCCCcEEEEEEcCcCCCCCHHHHHHHHHh-cCC--EEEEEEEe--C-CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence            3446788666554 577999999999996 999  77776644  2 376 999999876533   3467765

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=96.66  E-value=0.0043  Score=53.38  Aligned_cols=73  Identities=18%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI  267 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I  267 (283)
                      .+..+|+||   +|.|  ++++||+++|.+ || .  |+.|.+..  ....||.|.|.+.+....++.   |.     .+
T Consensus       148 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~~--i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~g~-----~~  214 (229)
T 2adc_A          148 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV--VKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNH-----DL  214 (229)
T ss_dssp             CCSCSEEEE---ECCCTTCCHHHHHHHHHT-TSCC--EEEEEECS--SSTTCEEEEESSHHHHHHHHHHHTTC-----BS
T ss_pred             CCCCCEEEE---eCCCccCCHHHHHHHHHH-cCCC--eeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHCCC-----cc
Confidence            344689988   6877  899999999997 99 7  77777732  235799999999998777754   53     35


Q ss_pred             c-CceeEEEeccc
Q 048589          268 H-GKDVRVRRFVP  279 (283)
Q Consensus       268 n-gk~iWaRky~p  279 (283)
                      + |+.+-+.--.|
T Consensus       215 ~~g~~l~v~~a~~  227 (229)
T 2adc_A          215 GENHHLRVSFSKS  227 (229)
T ss_dssp             SSSCBCEEEECSS
T ss_pred             CCCCeEEEEEecC
Confidence            6 88886665444

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=96.58  E-value=0.0057  Score=47.53  Aligned_cols=59  Identities=19%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CCHHHHHHHH-----------HhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcCceeE
Q 048589          210 ITRAELFEFF-----------TRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLI---LGENELMQFNIHGKDVR  273 (283)
Q Consensus       210 vse~Ei~~fF-----------t~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ingk~iW  273 (283)
                      ++++|++++|           .++||.  |++|.+-.  .+++.+||.|.|.+++.....   |+|.     .++||.+-
T Consensus        27 ~~~~~l~~~f~~~~edl~~~f~~~~G~--V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~-----~~~Gr~i~   99 (104)
T 1jmt_A           27 VSDVEMQEHYDEFFEEVFTEMEEKYGE--VEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR-----WFNGQPIH   99 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC-----EETTEECC
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhccCCc--eEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC-----EECCEEEE
Confidence            6777776666           256999  66666654  567899999999998876544   5664     48899886


Q ss_pred             EE
Q 048589          274 VR  275 (283)
Q Consensus       274 aR  275 (283)
                      +.
T Consensus       100 v~  101 (104)
T 1jmt_A          100 AE  101 (104)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=96.58  E-value=0.0047  Score=48.27  Aligned_cols=61  Identities=15%  Similarity=0.080  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcCceeEEEeccc
Q 048589          211 TRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLI---LGENELMQFNIHGKDVRVRRFVP  279 (283)
Q Consensus       211 se~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ingk~iWaRky~p  279 (283)
                      +++||++.|. +||.  |++|.+-.    +++..+||.|.|.+++.....   |+|.     .++||.+-+..+.+
T Consensus        26 ~~~dl~~~f~-~~G~--V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-----~~~Gr~i~v~~a~~   93 (105)
T 2pe8_A           26 LEVETKEECE-KYGK--VGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-----YFGGRVVKACFYNL   93 (105)
T ss_dssp             CHHHHHHHGG-GGSC--EEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEECCH
T ss_pred             HHHHHHHHHH-hcCC--EEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcCH
Confidence            6899999997 5998  66666643    257789999999998865443   5674     47999998876643

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0074  Score=50.68  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=31.7

Q ss_pred             CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecC
Q 048589          210 ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRS  249 (283)
Q Consensus       210 vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s  249 (283)
                      +++++|++||.+ ||+ ..+.-.+.+  ++++.+||.|.|.+
T Consensus        18 tte~~Lk~~Fs~-fGe-V~~~~li~Dp~Tg~slGfgfVef~d   57 (136)
T 2j8a_A           18 IQDISIKNYFKK-YGE-ISHFEAFNDPNSALPLHVYLIKYAS   57 (136)
T ss_dssp             CCHHHHHHHHHT-TSC-CSEEEEEECTTTCCEEEEEEEECC-
T ss_pred             CCHHHHHHHHHh-cCC-eEEEEEEecCCCCceeeEEEEEECC
Confidence            999999999995 998 555555555  89999999999994

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=96.11  E-value=0.011  Score=50.92  Aligned_cols=58  Identities=17%  Similarity=0.126  Sum_probs=44.3

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce-eeEEEeec-CCCCCceEEEEecChHHHHHHh
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC-VEDIKMGN-CRDQSLYARVIVRSPAFITLIL  257 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c-ve~v~m~~-~~~qplfariVf~s~~~vd~vL  257 (283)
                      +..+++||   ++.|  +|+++++++|.. ||. + +.+|.+-. .++...||.|-|.+.+.....+
T Consensus       121 ~p~~~l~v---~NLp~~~t~~~L~~~F~~-~G~-v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai  182 (205)
T 3tyt_A          121 HPSNVLHF---FNAPLEVTEENFFEICDE-LGV-KRPTSVKVFSGKSERSSSGLLEWDSKSDALETL  182 (205)
T ss_dssp             CCCSEEEE---EEECTTCCHHHHHHHHHH-HTC-CCCSEEEECSCCSSSSEEEEEECSSHHHHHHHH
T ss_pred             CCcceEEE---eCCCCCCCHHHHHHHHHh-cCC-cceEEEEEEcCCCCCceEEEEEeCCHHHHHHHH
Confidence            34689988   7887  999999999997 998 5 25665543 4455699999999987755543

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=96.09  E-value=0.022  Score=53.91  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=47.9

Q ss_pred             CCCCCceEEEEcc-CCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCCe
Q 048589          193 DADTDRTLFATFS-KGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENEL  262 (283)
Q Consensus       193 ~~~d~RT~FvTFS-~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~~  262 (283)
                      .++..+++||-=- -.+-+||+++++.|.+ ||+  |++|.|-.   ...||+|.|.+.+.....   |||...
T Consensus        14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~--V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~   81 (345)
T 3tht_A           14 VSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGL--VDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEV   81 (345)
T ss_dssp             CSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSC--EEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             cCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCC--eEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence            4556689999421 1355999999999997 999  78899943   468999999998764444   667653

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=95.69  E-value=0.022  Score=44.40  Aligned_cols=64  Identities=11%  Similarity=0.011  Sum_probs=49.5

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCceeE
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKDVR  273 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~iW  273 (283)
                      .+||   ++.+  +||++++++|.+ ||+  |.++.+..   +.+||+|-|.+++..+   ..|||     ..+.||.|-
T Consensus         9 wL~V---gNL~~~~te~~L~~lF~q-~G~--V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~-----~~l~gr~I~   74 (89)
T 2wbr_A            9 WLLL---KNLTAQIDGPTLRTLCMQ-HGP--LVSFHPYL---NQGIALCKYTTREEANKAQMALNN-----CVLANTTIF   74 (89)
T ss_dssp             EEEE---ECCCTTCCCHHHHHHHHH-HSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHTT-----EEETTEEEE
T ss_pred             eEEE---eCCCccCCHHHHHHHHHh-hCC--EEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcC-----CEECCcEEE
Confidence            4554   6665  999999999997 999  77788743   7899999999996644   35666     368888887


Q ss_pred             EEe
Q 048589          274 VRR  276 (283)
Q Consensus       274 aRk  276 (283)
                      +..
T Consensus        75 V~~   77 (89)
T 2wbr_A           75 AES   77 (89)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            654

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=95.60  E-value=0.027  Score=43.83  Aligned_cols=61  Identities=15%  Similarity=0.036  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHhhhCCceeeEEEeec-C----CCCCceEEEEecChHHHHH---HhCCCCeeeEEEcCceeEEEeccc
Q 048589          211 TRAELFEFFTRRYGEGCVEDIKMGN-C----RDQSLYARVIVRSPAFITL---ILGENELMQFNIHGKDVRVRRFVP  279 (283)
Q Consensus       211 se~Ei~~fFt~~~G~~cve~v~m~~-~----~~qplfariVf~s~~~vd~---vL~g~~~~kf~Ingk~iWaRky~p  279 (283)
                      .++||++.|.+ ||.  |++|.+-. .    ++..+||.|.|.+++....   -|+|.     .++||.+-+.-|-+
T Consensus        28 ~~~dl~~~f~k-~G~--V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~-----~f~GR~i~v~~~~~   96 (105)
T 3v4m_A           28 IVEDVRDECSK-YGL--VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR-----KFANRVVVTKYCDP   96 (105)
T ss_dssp             HHHHHHHHHHT-TSC--EEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEECH
T ss_pred             HHHHHHHHHHc-cCC--EEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-----EeCCCEEEEEEeCH
Confidence            46899999995 999  77777755 1    3567999999999877444   46674     57999998876644

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=94.84  E-value=0.067  Score=42.53  Aligned_cols=59  Identities=17%  Similarity=0.075  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHH---HhCCCCeeeEEEcCceeEEEecc
Q 048589          211 TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITL---ILGENELMQFNIHGKDVRVRRFV  278 (283)
Q Consensus       211 se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~---vL~g~~~~kf~Ingk~iWaRky~  278 (283)
                      -++||++.|. +||.  |++|.+.+ ....+||.|.|.+++....   -|+|.     .++||.+-+.-|-
T Consensus        30 l~edl~~~f~-kfG~--V~~v~i~~-~~~~G~~fV~f~~~e~A~~Ai~~lnG~-----~f~GR~i~v~~~~   91 (114)
T 3s6e_A           30 IKDDVIEECN-KHGG--VIHIYVDK-NSAQGNVYVKCPSIAAAIAAVNALHGR-----WFAGKMITAAYVP   91 (114)
T ss_dssp             HHHHHHHHHT-TTTC--CSEEEECT-TCTTCCEEEECSSHHHHHHHHHHHTTC-----EETTEECEEEEEC
T ss_pred             HHHHHHHHHh-ccCC--EEEEEEec-CCCcEEEEEEECCHHHHHHHHHHhCCC-----EECCEEEEEEEEc
Confidence            3678999997 5998  77787755 3357999999999876443   46775     5799999887654

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.71  E-value=0.15  Score=40.32  Aligned_cols=67  Identities=13%  Similarity=0.075  Sum_probs=48.8

Q ss_pred             CCce-EEEEccCCcc--CCHHHH----HHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeee
Q 048589          196 TDRT-LFATFSKGHP--ITRAEL----FEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQ  264 (283)
Q Consensus       196 d~RT-~FvTFS~G~P--vse~Ei----~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~k  264 (283)
                      .+.| +||   ++.|  ++++++    +++|.+ || .  |.+|    ++   +||.|+|.+++...+.+   +|..   
T Consensus         7 p~~T~lYV---~NL~~~~~~~~lk~~L~~lF~~-yGG~--Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~---   70 (96)
T 2diu_A            7 GCHTLLYV---YNLPANKDGKSVSNRLRRLSDN-CGGK--VLSI----TG---CSAILRFINQDSAERAQKRMENED---   70 (96)
T ss_dssp             CSSEEEEE---ESCCTTSCHHHHHHHHHHHHHT-TTCC--EEEC----CT---TCEEEEESSHHHHHHHHHHHTTCC---
T ss_pred             CcceEEEE---eCCCCcCCHHHHHHHHHHHHHH-cCCe--eEEE----ec---CEEEEEECCHHHHHHHHHHhcCCc---
Confidence            3556 656   8888  898885    489997 95 7  5555    23   99999999999876654   5755   


Q ss_pred             EEEcCceeEEEecccC
Q 048589          265 FNIHGKDVRVRRFVPK  280 (283)
Q Consensus       265 f~Ingk~iWaRky~pk  280 (283)
                        +.||.|-+.-...+
T Consensus        71 --l~gr~i~v~~A~~~   84 (96)
T 2diu_A           71 --VFGNRIIVSFTPKN   84 (96)
T ss_dssp             --SSSSCCEEESSCCS
T ss_pred             --cCCceEEEEecCCC
Confidence              78888877654443

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=93.64  E-value=0.15  Score=40.67  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhhCCceeeEEEeec--C-----CCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCceeEEEecc
Q 048589          212 RAELFEFFTRRYGEGCVEDIKMGN--C-----RDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKDVRVRRFV  278 (283)
Q Consensus       212 e~Ei~~fFt~~~G~~cve~v~m~~--~-----~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~iWaRky~  278 (283)
                      ++||++.|. +||.  |++|.+-.  .     ++..+||.|.|.+++...   .-|+|.     .++||.+-+.-|-
T Consensus        39 eedl~eef~-k~G~--V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-----~f~GR~i~v~~~~  107 (118)
T 3ue2_A           39 EGEVTEECG-KFGA--VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVYD  107 (118)
T ss_dssp             HHHHHHHHT-TTSC--EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEEC
T ss_pred             HHHHHHHHh-ccCC--EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcC
Confidence            789999998 5998  66666654  2     234589999999987644   346775     5799999887664

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=91.43  E-value=0.14  Score=50.31  Aligned_cols=57  Identities=16%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             CCceEEEEccCCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCC
Q 048589          196 TDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGE  259 (283)
Q Consensus       196 d~RT~FvTFS~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g  259 (283)
                      ..||+||-+++.  +++.|+.+||.+ ||+  |.++.|.+.  -..||-|=|.+.+.++.++..
T Consensus        52 a~rsv~v~~~~~--~~~~~l~~y~~~-~g~--i~~~~~~~~--~g~~~~vef~~~~~~~~~~~~  108 (464)
T 3pq1_A           52 AQRTVLIHCPEK--ISENKFLKYLSQ-FGP--INNHFFYES--FGLYAVVEFCQKESIGSLQNG  108 (464)
T ss_dssp             HHTEEEEEECCC-----CHHHHHHGG-GSC--CCCEEEECS--SSEEEEEECC---CCHHHHSS
T ss_pred             hcceEEEEcCCC--CCHHHHHHHHHh-cCC--cceEEEEcc--CCeEEEEEeCCHHHHHHHHhc
Confidence            459999987544  999999999975 999  999999872  229999999999999999876

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.97  E-value=0.22  Score=40.53  Aligned_cols=58  Identities=14%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             cCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecC-hHHHHHHhCCCCeeeEEEcCcee
Q 048589          209 PITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRS-PAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       209 Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s-~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      ++|+++|+++|.+ ||+  |..|.+..   .+..|.|-|.+ +......+..-+.-++.|+|+.+
T Consensus        30 ~~sredLke~F~~-~G~--V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~   88 (121)
T 1owx_A           30 QTCREDLHILFSN-HGE--IKWIDFVR---GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEV   88 (121)
T ss_dssp             SCCHHHHHHHTCS-SCC--EEEEECCT---TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred             cCCHHHHHHHHHh-cCC--EEEEEEec---CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence            4899999999997 999  88998865   22269999999 54433333322223446666433

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=88.83  E-value=0.83  Score=38.73  Aligned_cols=59  Identities=14%  Similarity=0.106  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHhhhCCceeeEEEeec-------CCCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCceeEEEec
Q 048589          211 TRAELFEFFTRRYGEGCVEDIKMGN-------CRDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKDVRVRRF  277 (283)
Q Consensus       211 se~Ei~~fFt~~~G~~cve~v~m~~-------~~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~iWaRky  277 (283)
                      .++|+++-|. +||.  |++|.+-+       ++++.+||.|.|.+++...   .-|+|.     .++||.|-+.-|
T Consensus       142 ~~~dl~~e~~-~~G~--v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-----~~~gr~i~~~~~  210 (222)
T 3dxb_A          142 LEGEVTEECG-KFGA--VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVY  210 (222)
T ss_dssp             HHHHHHHHHT-TTSC--EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----BSSSSBCEEEEC
T ss_pred             HHHHHHHHHH-ccCC--eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-----eECCeEEEEEEc
Confidence            4678999998 5998  66666643       3477899999999987644   557785     489999988765

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.12  E-value=11  Score=30.11  Aligned_cols=73  Identities=22%  Similarity=0.337  Sum_probs=57.2

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhh--hCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCC-CCeeeEEEcCcee
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRR--YGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGE-NELMQFNIHGKDV  272 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~--~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g-~~~~kf~Ingk~i  272 (283)
                      +++-|   .|.|  ++++-+.-||+++  -|-|=|++|.-..     .=|.|+|...+.+++||.. .+    .++|-.+
T Consensus         9 ~~I~V---~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H----~L~~~~L   76 (104)
T 2dhx_A            9 VAVEV---RGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADH----ELHGAQL   76 (104)
T ss_dssp             CEEEE---ESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCC----BSSSSBC
T ss_pred             cEEEE---ECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcc----eecCeEE
Confidence            45655   6777  8888899999984  3533577776522     4489999999999999997 66    8899999


Q ss_pred             EEEecccCCC
Q 048589          273 RVRRFVPKRA  282 (283)
Q Consensus       273 WaRky~pk~~  282 (283)
                      =++-|.|+.+
T Consensus        77 sV~P~~~~~~   86 (104)
T 2dhx_A           77 SLRPAPPRAP   86 (104)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEcCCCCCc
Confidence            9999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.89
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.82
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.81
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.67
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.65
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	98.6
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.59
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	98.58
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.58
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.56
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.55
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.54
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.5
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.47
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.46
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.46
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	98.44
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.43
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.41
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.41
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.4
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	98.38
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.36
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.36
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.35
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	98.35
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.34
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	98.34
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.32
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.31
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.29
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.29
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.27
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	98.26
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.26
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.25
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.23
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.23
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.23
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	98.2
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.19
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.18
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.17
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.17
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.16
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.15
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.15
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.13
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.1
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.1
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.1
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.04
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.04
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	98.03
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.03
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.02
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.01
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	97.98
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	97.96
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.95
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	97.93
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.9
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.88
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	97.76
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	97.75
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	97.74
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	97.74
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.73
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	97.71
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	97.67
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.62
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	97.52
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	97.48
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	97.42
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	97.32
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	97.31
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.26
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.22
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.03
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	97.02
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	96.9
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	96.81
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	96.81
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	95.23
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	94.14

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.5e-09  Score=79.30  Aligned_cols=76  Identities=18%  Similarity=0.273  Sum_probs=63.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      |++.|++||   +|.|  ++++||++||.+ ||+  |+++.|-.   +++..+||.|.|.+++..+.+|.....   .|+
T Consensus         3 pe~~~~lfV---~nlp~~~te~~l~~~F~~-~G~--i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~---~i~   73 (84)
T d1l3ka1           3 PEQLRKLFI---GGLSFETTDESLRSHFEQ-WGT--LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH---KVD   73 (84)
T ss_dssp             CGGGGEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSC---EET
T ss_pred             CCCCcEEEE---ECCCCCCCHHHHHHHHHh-hcc--ccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCC---EEC
Confidence            677899998   8999  999999999985 999  66666543   688889999999999999999985442   579


Q ss_pred             CceeEEEecc
Q 048589          269 GKDVRVRRFV  278 (283)
Q Consensus       269 gk~iWaRky~  278 (283)
                      ||.+-+++.+
T Consensus        74 Gr~i~V~~A~   83 (84)
T d1l3ka1          74 GRVVEPKRAV   83 (84)
T ss_dssp             TEECEEEECC
T ss_pred             CEEEEEEeee
Confidence            9999888754

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.7e-09  Score=77.57  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=66.7

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .+..+++||   +|.|  +|++||+++|.+ ||+  |++|.|- +  +++..+||+|.|.+++..+.+|...+    .|+
T Consensus         5 ~~~~~~lfV---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~~----~l~   74 (90)
T d2cqga1           5 VQKTSDLIV---LGLPWKTTEQDLKEYFST-FGE--VLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRH----MID   74 (90)
T ss_dssp             CCCCCCEEE---ESCCSSCCHHHHHHHHGG-GSC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCE----EET
T ss_pred             CcCCCeEEE---ECCCCCCCHHHHHHHHHh-hcc--cceeeeccCCCCcccCCEEEEEECCHHHHHHHHhcCC----ccC
Confidence            455678887   9999  999999999997 998  5666543 3  68889999999999999999998644    799


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      ||.+=++...||..
T Consensus        75 Gr~i~v~~a~~k~~   88 (90)
T d2cqga1          75 GRWCDCKLPNSKQS   88 (90)
T ss_dssp             TEEEEEECCCTTCC
T ss_pred             CEEeEEEeCCCCCC
Confidence            99999999888764

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.7e-09  Score=81.03  Aligned_cols=81  Identities=21%  Similarity=0.331  Sum_probs=68.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +++.|+|||   +|.|  ++++||++||.+ ||.  |+.+.+. +  +++..+||+|.|.+.+.++.+|.....   .|+
T Consensus        17 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~--i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~---~l~   87 (103)
T d1x4ba1          17 KEQFRKLFI---GGLSFETTEESLRNYYEQ-WGK--LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH---SID   87 (103)
T ss_dssp             HHHHTEEEE---ECCTTCCCHHHHHHHHTS-SCC--CSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSE---EET
T ss_pred             cCCCCEEEE---eCCCCcCCHHHHHHHHHh-hCc--ccceeecccccCCCccCeEEEEECCHHHHHHHHHhCCC---eEC
Confidence            456699999   8998  999999999987 998  5666654 3  678889999999999999999985443   589


Q ss_pred             CceeEEEecccCCCC
Q 048589          269 GKDVRVRRFVPKRAS  283 (283)
Q Consensus       269 gk~iWaRky~pk~~~  283 (283)
                      |+.|=+++..||..+
T Consensus        88 G~~i~V~~a~~ke~~  102 (103)
T d1x4ba1          88 GRVVEPKRAVAREES  102 (103)
T ss_dssp             TEEEEEECCSSCCCC
T ss_pred             CEEEEEEECcccCCC
Confidence            999999999998754

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.2e-08  Score=72.85  Aligned_cols=75  Identities=27%  Similarity=0.418  Sum_probs=63.0

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      ..+||||   +|.|  +||+||+++|.+ ||+  |.+|.+  +.+...||.|.|.+++..+.+|..    ...|+|+.+=
T Consensus         4 ~s~~lfV---~nLp~~~te~~L~~~F~~-~G~--v~~v~~--~~~~~gfafV~f~~~~~a~~a~~~----~~~i~g~~l~   71 (88)
T d1wf0a_           4 GSSGVFV---GRCTGDMTEDELREFFSQ-YGD--VMDVFI--PKPFRAFAFVTFADDQIAQSLCGE----DLIIKGISVH   71 (88)
T ss_dssp             CCCEEEE---ESCCSSSCHHHHHHHSTT-TSC--CCEEEC--CSSCCSCCEEECSCHHHHHHTTTC----EEEETTEEEE
T ss_pred             CCCEEEE---eCCCCCCCHHHHHHHHHH-cCC--ceEEEE--eeccCceEEEEECCHHHHHHHHhC----CCEECCEEeE
Confidence            4579998   9999  999999999996 998  555555  455678999999999999999862    4589999999


Q ss_pred             EEecccCCC
Q 048589          274 VRRFVPKRA  282 (283)
Q Consensus       274 aRky~pk~~  282 (283)
                      ++...||..
T Consensus        72 v~~a~~k~~   80 (88)
T d1wf0a_          72 ISNAEPKHN   80 (88)
T ss_dssp             EECCCCCCC
T ss_pred             EEeCCCCCC
Confidence            999988864

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=3.7e-08  Score=73.42  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=65.1

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCC---C-CeeeE
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGE---N-ELMQF  265 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g---~-~~~kf  265 (283)
                      .++.||+||   +|.|  +|++||+++|.+ ||+ .++...+.+  .+...+||+|.|.+.+.....+..   . ..-..
T Consensus         5 ~~~~~tlfV---~nLp~~~te~~l~~~f~~-~G~-v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~   79 (98)
T d1x4ha1           5 VTEGKTVFI---RNLSFDSEEEALGEVLQQ-FGD-LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL   79 (98)
T ss_dssp             CCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred             CCCCCEEEE---cCCCCcCCHHHHHHHHhc-ccc-ceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCc
Confidence            456789998   8999  999999999997 998 444444444  567789999999999998877652   1 12246


Q ss_pred             EEcCceeEEEecccCCC
Q 048589          266 NIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       266 ~Ingk~iWaRky~pk~~  282 (283)
                      .|+||.+=++.-.||..
T Consensus        80 ~~~gr~l~v~~a~~k~~   96 (98)
T d1x4ha1          80 KLDGRQLKVDLAVTRDE   96 (98)
T ss_dssp             ESSSCEEEEECCCCCCC
T ss_pred             EECCEEEEEEECCCCCc
Confidence            89999999988888764

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.5e-08  Score=71.94  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEE-eec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIK-MGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~-m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +.|+|++||   +|.|  ++++||++||.+ ||.  |+++. +.+  .+...+||.|.|.+++..+.++..-+-  +.++
T Consensus         2 ~~~~~kifV---~nLp~~~t~~~l~~~F~~-~G~--i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~--~~~~   73 (90)
T d1x5sa1           2 ASDEGKLFV---GGLSFDTNEQSLEQVFSK-YGQ--ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG--KSVD   73 (90)
T ss_dssp             CCCCSEEEE---ESCCTTCCHHHHHHHHHH-HSC--CCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT--CCTT
T ss_pred             CCCCCEEEE---ECCCCcCCHHHHHHhhhc-ccc--ccceeeccccccccccceEEEEECCHHHHHHHHHHcCC--CEEC
Confidence            568899988   8999  999999999996 998  56654 443  688899999999999998887642111  2489


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+=++.-.|+..
T Consensus        74 g~~l~V~~a~~~~~   87 (90)
T d1x5sa1          74 GRQIRVDQAGKSSD   87 (90)
T ss_dssp             SCCCEEEEEECCCC
T ss_pred             CEEEEEEEcCCCCC
Confidence            99998877776654

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=9.3e-08  Score=68.92  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=58.3

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      .|++||   +|.|  +|++||++||.+ ||+ ......+.+  +++..+||.|.|.+++..+.+|.-..   ..|+||.+
T Consensus         2 ~r~lfV---~nLp~~~te~~l~~~F~~-~G~-i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~---~~l~Gr~i   73 (79)
T d1l3ka2           2 VKKIFV---GGIKEDTEEHHLRDYFEQ-YGK-IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY---HTVNGHNC   73 (79)
T ss_dssp             CSEEEE---ECCTTTCCHHHHHHHHTT-TSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSC---CEETTEEC
T ss_pred             CCEEEE---CCCCCcCCHHHHHHHHHH-hcc-ccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCC---CEECCEEE
Confidence            478888   8999  999999999986 998 444444444  67778899999999999999986322   26899999


Q ss_pred             EEEec
Q 048589          273 RVRRF  277 (283)
Q Consensus       273 WaRky  277 (283)
                      =+++.
T Consensus        74 ~V~~A   78 (79)
T d1l3ka2          74 EVRKA   78 (79)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88875

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.6e-08  Score=70.78  Aligned_cols=67  Identities=16%  Similarity=0.312  Sum_probs=56.7

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk  276 (283)
                      |.+|.|  +|++||+++|.+ ||+  |++|.+-.   +++..+||+|.|.+++..+.+|.....   .|+||.+-+|+
T Consensus         3 fVgnLp~~~te~~l~~~F~~-~G~--I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~---~i~g~~i~vk~   74 (75)
T d1x0fa1           3 FVGGLSPDTPEEKIREYFGG-FGE--VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH---NVGLSKCEIKV   74 (75)
T ss_dssp             EEESCCSSCCHHHHHHHHHH-HSC--EEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSC---CBTTBCCEEEC
T ss_pred             EEcCCCCCCCHHHHHHHHHH-hCC--cccccccccccccccccEEEEEECCHHHHHHHHhhCCC---EECCEEeEEEE
Confidence            448888  999999999997 999  77776543   688899999999999999999986443   59999988775

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.7e-08  Score=72.12  Aligned_cols=81  Identities=21%  Similarity=0.352  Sum_probs=64.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ....||+||   +|.|  ++++||+++|.+ ||+  |++|.+- +  +++..+||.|.|.+++....++..-+  ...|+
T Consensus         2 a~~~~tlfV---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~--~~~i~   73 (89)
T d2cqba1           2 ATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD--ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN--ESELF   73 (89)
T ss_dssp             CCCCSCEEE---ESCCSSCCHHHHHHHHTT-TSC--CCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT--TEEET
T ss_pred             CCCCcEEEE---eCCCCcCCHHHHHHHHhh-CCe--EEecccccccccccccceeEEEECCHHHHHHHHHHcC--CCEEC
Confidence            346789998   8988  999999999986 998  6666654 3  68888999999999998777665322  13789


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+=++...|++.
T Consensus        74 g~~l~v~~a~p~~~   87 (89)
T d2cqba1          74 GRTIRVNLAKPMRI   87 (89)
T ss_dssp             TEEEEEEECCCCCC
T ss_pred             CEEEEEEEeCCCCC
Confidence            99998888888764

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.7e-08  Score=71.61  Aligned_cols=81  Identities=20%  Similarity=0.301  Sum_probs=64.9

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ..++|+||   +|.|  ++++||+++|.+ ||+  |+++.+ .+  +++...||.|.|.+.+..+.++...+  ...|+|
T Consensus         7 ~~~~tlfV---~nLp~~~t~~~l~~~F~~-~G~--v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~--g~~~~g   78 (93)
T d1x5ua1           7 NQDATVYV---GGLDEKVSEPLLWELFLQ-AGP--VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD--MIKLYG   78 (93)
T ss_dssp             CTTTEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS--SCBCSS
T ss_pred             CCCCEEEE---eCCCCcCCHHHHHHHHHH-hCC--ccccceeecccccccccceEEEECCHHHHHHHHHHcC--CCEECC
Confidence            34689998   8999  999999999975 999  556654 44  67788899999999999888775322  124899


Q ss_pred             ceeEEEecccCCCC
Q 048589          270 KDVRVRRFVPKRAS  283 (283)
Q Consensus       270 k~iWaRky~pk~~~  283 (283)
                      +.+=++...|++.|
T Consensus        79 ~~l~V~~A~~~~~n   92 (93)
T d1x5ua1          79 KPIRVNKASAHNKN   92 (93)
T ss_dssp             CBCEEEETTTTSCC
T ss_pred             EEEEEEEcCCCCCC
Confidence            99999999988765

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.9e-07  Score=69.87  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=65.3

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ...+.+++||   +|.|  ++++||+++|.+ ||+  |++|.+-. .+.+..||+|.|.+.+....++...+.  ..++|
T Consensus         7 ~~~~~~~l~v---~nLp~~~t~~~L~~~F~~-~G~--v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~--~~~~g   78 (93)
T d2cq3a1           7 SKSTPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK--ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVEG   78 (93)
T ss_dssp             CSCCCCEEEE---ESCCTTCCHHHHHHHGGG-TSC--EEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT--CEETT
T ss_pred             CCCCCCEEEE---ECCCCCCCHHHHHHHHhh-cce--eeeccccccccCCcceeEEEECCHHHHHHHHHHcCC--CEECC
Confidence            3445678887   8999  999999999986 999  66665544 556789999999999998888764222  27899


Q ss_pred             ceeEEEecccCCC
Q 048589          270 KDVRVRRFVPKRA  282 (283)
Q Consensus       270 k~iWaRky~pk~~  282 (283)
                      +.+.++...||..
T Consensus        79 ~~l~V~~A~~r~~   91 (93)
T d2cq3a1          79 RKIEVNNATARVM   91 (93)
T ss_dssp             EECEEEECCSSCC
T ss_pred             EEEEEEecCcCCC
Confidence            9999999988854

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.1e-07  Score=69.29  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=61.7

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+.+++||   +|.|  ++|+||+++|.+ ||+  |++|.|- +  +++...||+|.|.+.+..+.++...+.   .|+|
T Consensus         8 ~~~~~lfV---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~---~l~G   78 (103)
T d2cqda1           8 TTFTKIFV---GGLPYHTTDASLRKYFEG-FGD--IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IIDG   78 (103)
T ss_dssp             CSSSEEEE---ECCCSSCCHHHHHHHHHT-TSC--EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EETT
T ss_pred             CCCcEEEE---eCCCCcCcHHHHHHHHhh-ccc--ccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC---cCCC
Confidence            34567988   8999  999999999975 999  5666554 3  688899999999999999999997653   4899


Q ss_pred             ceeEEEeccc
Q 048589          270 KDVRVRRFVP  279 (283)
Q Consensus       270 k~iWaRky~p  279 (283)
                      +.+-++...+
T Consensus        79 r~l~V~~a~~   88 (103)
T d2cqda1          79 RKANVNLAYL   88 (103)
T ss_dssp             EECEEEESTT
T ss_pred             EEEEEEEcCC
Confidence            9997766543

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.6e-07  Score=67.79  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      .+.||+||   +|.|  ++++||+++|.+ ||+  |++|.+-. .+....||.|.|.+.+....++...+  ...++|+.
T Consensus         6 ~~~~tl~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~--~~~~~g~~   77 (90)
T d2cqia1           6 GQPRTLYV---GNLSRDVTEVLILQLFSQ-IGP--CKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN--GRKILGKE   77 (90)
T ss_dssp             CCCCEEEE---ESCCTTCCHHHHHHHHHH-HSC--EEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT--TEEETTEE
T ss_pred             CCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--ceeeeeecccCccceeeEEEECCHHHHHHHHHHcC--CCEECCEE
Confidence            45789988   8888  999999999996 999  67776643 44456799999999999888776333  23689999


Q ss_pred             eEEEecccCC
Q 048589          272 VRVRRFVPKR  281 (283)
Q Consensus       272 iWaRky~pk~  281 (283)
                      +-++...|+.
T Consensus        78 i~v~~a~~~~   87 (90)
T d2cqia1          78 VKVNWATTPS   87 (90)
T ss_dssp             EEEEECCCTT
T ss_pred             EEEEEcCCCC
Confidence            9777655543

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.9e-07  Score=71.63  Aligned_cols=79  Identities=22%  Similarity=0.370  Sum_probs=62.3

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      +|+-.||+||   +|.|  +|+++|+++|.+ ||+  |+.|.+-..+...+||+|.|.+.+.....+..-+.  ..|+|+
T Consensus         3 pp~~~r~l~V---~nLp~~~te~~l~~~F~~-~G~--v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g--~~~~gr   74 (114)
T d2f9da1           3 PPEVNRILYI---RNLPYKITAEEMYDIFGK-YGP--IRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG--FNVCNR   74 (114)
T ss_dssp             CTTCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred             ccCCCCEEEE---ECCCCCCCHHHHHHHHhh-cCC--eEeecccccCCcCCeEEEEECCHHHHHHHHHHhCC--CEECCE
Confidence            5677899998   8888  999999999997 999  78888876666778999999999987776642111  157999


Q ss_pred             eeEEEeccc
Q 048589          271 DVRVRRFVP  279 (283)
Q Consensus       271 ~iWaRky~p  279 (283)
                      .+=+..+.+
T Consensus        75 ~l~V~~a~~   83 (114)
T d2f9da1          75 YLVVLYYNA   83 (114)
T ss_dssp             ECEEEECCH
T ss_pred             EEEEEEcCC
Confidence            887766544

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.46  E-value=7.7e-07  Score=70.51  Aligned_cols=81  Identities=25%  Similarity=0.371  Sum_probs=63.4

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .++..||+||   +|.|  ++++||+++|.+ ||+  |++|.+- +  +++...||+|.|.+.+.....+..-+  ...|
T Consensus        38 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~ln--g~~~  109 (139)
T d1u6fa1          38 EPDVLRNLMV---NYIPTTVDEVQLRQLFER-YGP--IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN--GFNI  109 (139)
T ss_dssp             CTTTTSEEEE---ESCSTTCCHHHHHHHHHH-HSC--EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT--TEEC
T ss_pred             CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-hcc--ccccccccccccccccceeeEEECCHHHHHHHHHHhC--CCEE
Confidence            3556689988   8888  999999999997 999  6666554 2  67788999999999999888775322  1378


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+=++...++.
T Consensus       110 ~gr~l~V~~a~~~~  123 (139)
T d1u6fa1         110 LNKRLKVALAASGH  123 (139)
T ss_dssp             SSCEEEEEESSCCC
T ss_pred             CCEEEEEEEcCCCC
Confidence            99999888776554

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.3e-07  Score=68.75  Aligned_cols=76  Identities=17%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             CCCCceEEEEccCCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          194 ADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      |...+|+||   +|+|+||+||+++|.+ ||+  |.++.+.+   .+.||.|.|.+.+..+..+...+.  ..|+|+.+=
T Consensus         2 p~~~~ti~V---~~~~~te~~L~~~F~~-~G~--I~~v~~~~---~~~~afV~f~~~~~A~~Ai~~lng--~~~~g~~l~   70 (79)
T d2bz2a1           2 PRKGNTLYV---YGEDMTPTLLRGAFSP-FGN--IIDLSMDP---PRNCAFVTYEKMESADQAVAELNG--TQVESVQLK   70 (79)
T ss_dssp             CCCCCEEEE---ECSSCCHHHHHHHHST-TCC--CSCEEEET---TTTEEEEECSSHHHHHHHHHHHTT--CBCSSCBCE
T ss_pred             CCCCCEEEE---ECCCCCHHHHHHHHhc-cCc--cceeeecc---CCCEEEEEEcccHHHHHHHHHhCC--CEECCEEEE
Confidence            566789998   4899999999999986 999  77788744   467999999999997776643221  147898886


Q ss_pred             EEecccC
Q 048589          274 VRRFVPK  280 (283)
Q Consensus       274 aRky~pk  280 (283)
                      ++--.|+
T Consensus        71 V~~a~~~   77 (79)
T d2bz2a1          71 VNIARKQ   77 (79)
T ss_dssp             EEECCSS
T ss_pred             EEEecCC
Confidence            5544444

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.1e-07  Score=69.13  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      +.++.++||   +|.|  +|++||++||.. ||. .+..|.+.+  .+...+||.|-|.+++..+.+|. .+..  .|+|
T Consensus        12 ~~~~~~v~v---~nLP~~~te~dI~~~F~~-~g~-v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~--~i~g   83 (104)
T d1wg5a_          12 TANDGFVRL---RGLPFGCSKEEIVQFFSG-LEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKE--RIGH   83 (104)
T ss_dssp             CSCCCEEEE---ESCCTTCCHHHHHHHTTT-CCE-EEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTC--CSSS
T ss_pred             CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-ceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCC--EEcc
Confidence            445667776   9999  999999999987 897 777777766  67778899999999999999997 2222  5899


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      |.|.++...|+.
T Consensus        84 R~i~V~~~~~~~   95 (104)
T d1wg5a_          84 RYIEIFKSSRAE   95 (104)
T ss_dssp             SCCEEEEECTTT
T ss_pred             eEEEEEECCHHH
Confidence            999998877754

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.1e-06  Score=64.86  Aligned_cols=78  Identities=17%  Similarity=0.262  Sum_probs=63.4

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-cCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-NCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      ..++||   +|.|  ++++||+++|.+ ||+  |+.+.+- +.+....||+|.|.+.+..+.++..-+.  ..|+|+.+-
T Consensus         8 ~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~   79 (89)
T d1cvja2           8 VGNIFI---KNLDKSIDNKALYDTFSA-FGN--ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVF   79 (89)
T ss_dssp             TTEEEE---ESCCSSCCHHHHHHHHHT-TSC--EEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSE--EEETTEEEE
T ss_pred             CCEEEE---eCCCCCCCHHHHHHHHHh-cCC--ceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            357887   8988  999999999986 998  5555544 3455678999999999999999976543  478999999


Q ss_pred             EEecccCCC
Q 048589          274 VRRFVPKRA  282 (283)
Q Consensus       274 aRky~pk~~  282 (283)
                      +..+.||+.
T Consensus        80 V~~a~~~~~   88 (89)
T d1cvja2          80 VGRFKSRKE   88 (89)
T ss_dssp             EEECCCTTT
T ss_pred             EEECCCCCC
Confidence            999998863

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=7.2e-07  Score=67.06  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +.+..++||   +|.|  ++++||+++|.+ ||+  |++|.|-.   +++...||.|.|.+.+..+..|..-+.  ..++
T Consensus         5 ~~~~~~lfV---~nL~~~~t~~~l~~~F~~-~g~--v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g--~~~~   76 (99)
T d1whwa_           5 SSGSGRLFV---RNLSYTSSEEDLEKLFSA-YGP--LSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQ   76 (99)
T ss_dssp             CCSCEEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESS
T ss_pred             CCCCCEEEE---ECCCCcCCHHHHHHHHHh-cCC--ceeeeecccccccccCcceEEEECCHHHHHHHHHHcCC--CEEC
Confidence            455667888   8888  999999999986 999  66777643   688889999999999998877653222  3589


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      |+.+=++...+|+.
T Consensus        77 gr~i~V~~a~~~~~   90 (99)
T d1whwa_          77 GRMLHVLPSTIKKE   90 (99)
T ss_dssp             SCEEEEEECCCCST
T ss_pred             CEEEEEEECCCCCc
Confidence            99998888777653

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=5e-07  Score=65.34  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=56.0

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      |.|+||   +|.|  +|++||+++|.+ ||+ ....+.+.+  .++...||.|.|.+.+..+.++..-+.  ..++|+++
T Consensus         1 d~tl~v---~nLp~~~t~~~l~~~f~~-~G~-v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g--~~~~g~~i   73 (81)
T d2ghpa1           1 ECTLWM---TNFPPSYTQRNIRDLLQD-INV-VALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG--LKIEGYTL   73 (81)
T ss_dssp             SCEEEE---ECCCTTCCHHHHHHHHHH-TTC-CCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT--CEETTEEC
T ss_pred             CcEEEE---ECCCCcCCHHHHHHHHHH-hCc-EEeeeeecccccccccceeEEEECCHHHHHHHHHHhCC--CEECCEEE
Confidence            358888   8999  999999999987 998 555555554  688899999999999998877652111  17899999


Q ss_pred             EEEeccc
Q 048589          273 RVRRFVP  279 (283)
Q Consensus       273 WaRky~p  279 (283)
                      -++...|
T Consensus        74 ~V~~a~P   80 (81)
T d2ghpa1          74 VTKVSNP   80 (81)
T ss_dssp             EEEECCC
T ss_pred             EEEEccC
Confidence            8887655

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.6e-07  Score=71.18  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+.||+||   +|.|  ++++||+++|.+ ||+  |++|.|-.   +++..+||.|.|.+.+....++..-+..  .++|
T Consensus         6 ~~~rtl~V---~nLp~~~te~~l~~~f~~-~G~--i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~--~~~g   77 (104)
T d1p1ta_           6 RSLRSVFV---GNIPYEATEEQLKDIFSE-VGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR--EFSG   77 (104)
T ss_dssp             HHHSCEEE---ESCCTTSCHHHHHHHHHT-TSC--CSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB--SCSS
T ss_pred             CCCCEEEE---ECCCCcCCHHHHHHhhhc-ccc--ccccccccccceeccCCceEEEECCHHHHHHHHHHcCCC--EECC
Confidence            35689998   7888  999999999986 998  66776543   5777889999999999988887643222  4799


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-++...|++
T Consensus        78 ~~i~V~~a~~~~   89 (104)
T d1p1ta_          78 RALRVDNAASEK   89 (104)
T ss_dssp             SCBEEEETTCTT
T ss_pred             EEEEEEECCCCC
Confidence            999888776653

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.7e-07  Score=66.49  Aligned_cols=67  Identities=21%  Similarity=0.445  Sum_probs=54.7

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk  276 (283)
                      |.+|.|  +||+||++||.+ ||+  |.++.+-.   +++..+||+|.|.+++..+..|.-...   .|+|+.+-+|+
T Consensus         3 fV~nl~~~~te~~l~~~F~~-~G~--i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~---~l~Gr~i~V~r   74 (75)
T d1hd0a_           3 FIGGLSWDTTKKDLKDYFSK-FGE--VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEH---KLNGKVIDPKR   74 (75)
T ss_dssp             EEECCCTTCCHHHHHHHHHT-TSC--EEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCC---CBTTBCCEECC
T ss_pred             EEeCCCCcCCHHHHHHHHHh-hcc--ccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCC---EECCCEEEeeE
Confidence            448888  999999999986 999  66766554   688899999999999999999873222   58999987765

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5e-07  Score=66.63  Aligned_cols=71  Identities=18%  Similarity=0.236  Sum_probs=58.5

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      ..||+||   +|.|  +|++||++||.+ ||+  |+.|.|..  .++..+||.|.|.+++....+|.-   -...++|+.
T Consensus         5 ~~rtvfV---~nlp~~~te~~l~~~F~~-~G~--v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~---~~~~~~g~~   75 (85)
T d1zh5a2           5 KNRSVYI---KGFPTDATLDDIKEWLED-KGQ--VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET---PGQKYKETD   75 (85)
T ss_dssp             HTTEEEE---ECCCTTCCHHHHHHHHTT-SCC--EEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTC---CCCEETTEE
T ss_pred             CcCEEEE---ECCCCCCCHHHHHHHHHH-hcc--cccceeeeeccCCcceEEEEEEcCHHHHHHHHHH---CCCEECCEE
Confidence            3589988   8999  999999999996 998  67777765  566778999999999999999963   235689988


Q ss_pred             eEEE
Q 048589          272 VRVR  275 (283)
Q Consensus       272 iWaR  275 (283)
                      +=++
T Consensus        76 l~v~   79 (85)
T d1zh5a2          76 LLIL   79 (85)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            7554

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.1e-07  Score=66.91  Aligned_cols=72  Identities=21%  Similarity=0.320  Sum_probs=55.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      |+..+|+||   .|.|  +|++||+++|.+ ||+  |++|.+- +  ++++..||.|.|.+.+....++...+  ...++
T Consensus         6 p~~~~~l~V---~nL~~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~   77 (83)
T d2cqca1           6 PDPNCCLGV---FGLSLYTTERDLREVFSK-YGP--IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN--GMELD   77 (83)
T ss_dssp             CCGGGCEEE---ESCCSSCCHHHHHHHHHT-TSC--EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT--TEEET
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC--CccccccccccccccccceEEEECCHHHHHHHHHHcC--CCEEC
Confidence            445689988   8888  999999999986 998  5666543 3  67788899999999999877765322  13578


Q ss_pred             CceeE
Q 048589          269 GKDVR  273 (283)
Q Consensus       269 gk~iW  273 (283)
                      |+.+-
T Consensus        78 gr~i~   82 (83)
T d2cqca1          78 GRRIR   82 (83)
T ss_dssp             TEEEE
T ss_pred             CEEeE
Confidence            88763

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.5e-07  Score=68.06  Aligned_cols=77  Identities=10%  Similarity=0.037  Sum_probs=62.1

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      .++....|+||   +|.|  ++++||++||.+ ||. ..+.+.+-.  .++..+||.|.|.|++..+.+|. .+  ...|
T Consensus         3 dv~~~~~~v~v---~nLp~~~t~~~l~~~F~~-~g~-i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n--~~~i   74 (103)
T d2cpya1           3 DVNSAKVCAHI---TNIPFSITKMDVLQFLEG-IPV-DENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LH--RKKL   74 (103)
T ss_dssp             SCCSCCCEEEE---ESCCTTSCHHHHHHHTTT-SCC-CSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GC--SEEE
T ss_pred             CCCCCceEEEE---eCCCCCCCHHHHhhhhcc-cce-EEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cC--CCeE
Confidence            45666788988   8999  999999999976 997 555455544  78899999999999999999996 22  3478


Q ss_pred             cCceeEEEe
Q 048589          268 HGKDVRVRR  276 (283)
Q Consensus       268 ngk~iWaRk  276 (283)
                      +||.+-++.
T Consensus        75 ~gr~i~V~~   83 (103)
T d2cpya1          75 NGREAFVHV   83 (103)
T ss_dssp             TTEEEEEEE
T ss_pred             CCcEEEEEE
Confidence            999997754

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.4e-07  Score=70.86  Aligned_cols=76  Identities=22%  Similarity=0.272  Sum_probs=59.9

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      +.||+||   +|.|  ++++||++||.. ||+  |++|.+-.   +++..+||.|.|.+++.+...|. .+.  ..++|+
T Consensus        17 ~~~tifV---~nL~~~~te~~l~~~F~~-~G~--V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g--~~~~G~   87 (101)
T d2cq4a1          17 DARTVFC---MQLAARIRPRDLEDFFSA-VGK--VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTG--QRLLGV   87 (101)
T ss_dssp             HHTEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTT--EEETTE
T ss_pred             CCCEEEE---ECCCCCCCHHHHHHHHcC-CCe--EEEEEeeecCCCccccceEEEEECCHHHHHHHHH-HCC--CEECCE
Confidence            5689988   6888  999999999997 999  66665543   68899999999999998877775 222  367999


Q ss_pred             eeEEEecccC
Q 048589          271 DVRVRRFVPK  280 (283)
Q Consensus       271 ~iWaRky~pk  280 (283)
                      .+=++.-.|+
T Consensus        88 ~l~V~~a~~~   97 (101)
T d2cq4a1          88 PIIVQASQAE   97 (101)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEECCCC
Confidence            9988764443

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.34  E-value=5e-07  Score=65.35  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      +.++||   +|.|  +|++||+++|.+ ||+  |+++.+-.   +++...||.|.|.+.+....++..-+.  ..++|+.
T Consensus         2 ~t~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng--~~~~g~~   73 (82)
T d1b7fa1           2 NTNLIV---NYLPQDMTDRELYALFRA-IGP--INTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG--ITVRNKR   73 (82)
T ss_dssp             CSEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTEE
T ss_pred             CCEEEE---eCCCCCCCHHHHHHHHHH-hCC--cceeeeeeecccCCccccceEEECCHHHHHHHHHHhCC--CEECCEE
Confidence            457888   8999  999999999986 998  77777643   677889999999999998887753221  2579999


Q ss_pred             eEEEeccc
Q 048589          272 VRVRRFVP  279 (283)
Q Consensus       272 iWaRky~p  279 (283)
                      +=++.-.|
T Consensus        74 l~v~~a~p   81 (82)
T d1b7fa1          74 LKVSYARP   81 (82)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCC
Confidence            87765544

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.8e-07  Score=66.51  Aligned_cols=77  Identities=21%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             EEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          200 LFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       200 ~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      |||   +|.|  +|++||+++|.+ ||+ .|++|.|..    .++..+||+|.|.+.+....++..-+...+.++|+.+=
T Consensus         4 LyV---~nLp~~~te~~l~~~f~~-~g~-~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~   78 (96)
T d2disa1           4 LFI---GGIPKMKKREEILEEIAK-VTE-GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA   78 (96)
T ss_dssp             EEE---ECCCTTSCHHHHHHHHHH-HST-TEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred             EEE---cCCCCcCCHHHHHHHHHH-hCC-cceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEE
Confidence            555   8999  999999999997 998 788998864    46778899999999999998887655556788999886


Q ss_pred             EEecccCC
Q 048589          274 VRRFVPKR  281 (283)
Q Consensus       274 aRky~pk~  281 (283)
                      +.-..|++
T Consensus        79 V~~A~p~~   86 (96)
T d2disa1          79 VDWAEPEI   86 (96)
T ss_dssp             EEESCSSC
T ss_pred             EEEcCCCC
Confidence            66666654

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.7e-07  Score=68.33  Aligned_cols=68  Identities=19%  Similarity=0.323  Sum_probs=54.1

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEec
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRF  277 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRky  277 (283)
                      |.+|.|  +|++||++||.+ ||+  |+++.+- +  +++..+||.|.|.+++.++.+|.-+.   -.|+||.+=+++.
T Consensus         4 fV~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~---~~i~Gr~i~V~~A   76 (77)
T d1uawa_           4 FIGGLSWQTTQEGLREYFGQ-FGE--VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVA   76 (77)
T ss_dssp             EEESCCSSCCSHHHHHHHTT-TSC--CCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCCEEEEC
T ss_pred             EEeCCCCcCCHHHHHHHHHH-hCC--cceeeeecccCCCCccceEEEEECCHHHHHHHHHcCC---CEECCeEEEEEEC
Confidence            338888  999999999975 998  5555543 3  68889999999999999999987322   2589999887753

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.7e-06  Score=63.57  Aligned_cols=78  Identities=14%  Similarity=0.128  Sum_probs=60.6

Q ss_pred             CCCceEEEEccCCcc--CC-HHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          195 DTDRTLFATFSKGHP--IT-RAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vs-e~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      -+.|++||   +|.|  ++ |++++++|.+ ||+  |++|.+-.    +++..+||.|.|.+.+....+|.- +.  ..+
T Consensus         2 ~e~~~l~V---~nLp~~~t~ed~l~~~F~~-~G~--i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~-n~--~~~   72 (86)
T d2ghpa3           2 LEGREIMI---RNLSTELLDENLLRESFEG-FGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQM-NR--SLL   72 (86)
T ss_dssp             CTTTEEEE---EEECTTTCCHHHHHHHHGG-GSC--EEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGG-TT--EEE
T ss_pred             CCCCEEEE---ECCCCCcccHHHHHHHHHh-hhh--ccceeeecccCCccccceeeeEEECCHHHHHHHHhc-CC--CEE
Confidence            36789988   8888  55 5669999986 999  88887632    577788999999999998888862 22  368


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +||.+=++...||+
T Consensus        73 ~gr~l~V~~a~~kP   86 (86)
T d2ghpa3          73 GNREISVSLADKKP   86 (86)
T ss_dssp             TTEEEEEEECCCCC
T ss_pred             CCEEEEEEEcCCCC
Confidence            99999998877764

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.6e-06  Score=64.70  Aligned_cols=81  Identities=21%  Similarity=0.337  Sum_probs=62.2

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      ..+++++||   ++.|  ++++||+++|.+ ||+  |+.+.+...+....||.|.|.+++....++..-+-  ..++|++
T Consensus        11 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g--~~~~g~~   82 (95)
T d1x4aa1          11 GNNDCRIYV---GNLPPDIRTKDIEDVFYK-YGA--IRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYDGYR   82 (95)
T ss_dssp             CCCSSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT--CEETTEE
T ss_pred             CCCCCEEEE---ECCCCCCCHHHHHHHHhc-CCc--eEEEEecccccccceEEEEECCHHHHHHHHHHhCC--CEECCEE
Confidence            455678988   7888  999999999986 998  77777766566788999999999997776542111  2579999


Q ss_pred             eEEEecccCCC
Q 048589          272 VRVRRFVPKRA  282 (283)
Q Consensus       272 iWaRky~pk~~  282 (283)
                      +=++.-.+.++
T Consensus        83 l~V~~a~~~r~   93 (95)
T d1x4aa1          83 LRVEFPRSGRG   93 (95)
T ss_dssp             CEEECCCCCCC
T ss_pred             EEEEeccCCCC
Confidence            97776655554

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.6e-07  Score=68.61  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+..+|+||   +|.|  ++++||+++|.+ ||+ ++..+.+.+  .+.+..||.|.|.+.+....++..-+.  ..|+|
T Consensus        15 ~~ps~tl~V---~nLp~~~t~~~l~~~f~~-~G~-v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g--~~~~g   87 (102)
T d2cpxa1          15 GEPNKVLYL---KNLSPRVTERDLVSLFAR-FQE-KKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG--YKLYG   87 (102)
T ss_dssp             CSCCSEEEE---ECCCTTCCHHHHHHHTHH-HHH-SSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT--CBCSS
T ss_pred             CCCCCEEEE---eCCCCCCCHHHHHHHHhh-ccc-eeeEEeecccccccccccceEEeccHHHHHHHHHHhCC--CEECC
Confidence            344689988   7888  999999999997 997 554444444  688999999999999998887753222  24799


Q ss_pred             ceeEEEecccCCC
Q 048589          270 KDVRVRRFVPKRA  282 (283)
Q Consensus       270 k~iWaRky~pk~~  282 (283)
                      +.+-++...||+.
T Consensus        88 ~~l~V~~ak~k~~  100 (102)
T d2cpxa1          88 KILVIEFGKNKKQ  100 (102)
T ss_dssp             CBCEEEECCCCSC
T ss_pred             EEEEEEeCCCccc
Confidence            9999988887753

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=1.7e-06  Score=62.36  Aligned_cols=69  Identities=12%  Similarity=0.281  Sum_probs=56.3

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEE
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVR  275 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaR  275 (283)
                      |+||   +|.|  ++++||++||.. ||+  |+.|.|.. .+.+..||.|-|.+++.+...|.-..+   .|+|+.+-+.
T Consensus         2 tv~V---~nlp~~~t~~~l~~~F~~-~G~--I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~~~~~---~i~g~~i~V~   72 (75)
T d2ghpa2           2 TVLV---KNLPKSYNQNKVYKYFKH-CGP--IIHVDVADSLKKNFRFARIEFARYDGALAAITKTHK---VVGQNEIIVS   72 (75)
T ss_dssp             EEEE---EEECTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTC---EETTEECEEE
T ss_pred             EEEE---ECCCCCCCHHHHHHHHhc-CCc--eEEEEEEeeccccceEEEEEEcchHHhHHHHHhcCc---EECCEEEEEE
Confidence            5666   7888  999999999996 999  77888865 555667999999999999999873322   6899998877


Q ss_pred             e
Q 048589          276 R  276 (283)
Q Consensus       276 k  276 (283)
                      +
T Consensus        73 ~   73 (75)
T d2ghpa2          73 H   73 (75)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=6.2e-07  Score=63.56  Aligned_cols=67  Identities=18%  Similarity=0.295  Sum_probs=53.8

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk  276 (283)
                      |.+|.|  +||+||+++|.+ ||.  |+.+.+..   ++.+..||.|.|.+++..+.+|.-+.   ..|+||.+-+|+
T Consensus         3 fV~nLp~~~te~~l~~~F~~-~G~--i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~---~~l~gr~i~V~~   74 (75)
T d2msta_           3 FVGGLSVNTTVEDVKHYFEQ-FGK--VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHF---HEINNKMVECKK   74 (75)
T ss_dssp             EEECCCSSCCHHHHHHHHHT-TSC--CSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSS---CCBTTBCCEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHH-hCC--cceeeeeeeccccccCceeEEEECCHHHHHHHHhcCC---CEECCeEEEEEE
Confidence            348888  999999999986 998  55555543   68899999999999999998887221   258999998876

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=9.8e-07  Score=65.89  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCcee-------eEEEeec---CCCCCceEEEEecChHHHHHHhCCCC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCV-------EDIKMGN---CRDQSLYARVIVRSPAFITLILGENE  261 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cv-------e~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~  261 (283)
                      ..+.+|+||   +|.|  +|++||+++|.. ||+ ..       ..+.+..   .++...||.|.|.+++..+.++...+
T Consensus         5 ~~~~~~i~V---~nLp~~~te~~l~~~F~~-~G~-i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~   79 (101)
T d2cpea1           5 DSDNSAIYV---QGLNDSVTLDDLADFFKQ-CGV-VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD   79 (101)
T ss_dssp             CCCCCEEEE---ECCCTTCCHHHHHHHHTT-TSC-BCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEE---ECCCCcCCHHHHHHHHHH-Cce-EEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhC
Confidence            456789988   8999  999999999986 996 21       1233322   57788999999999999887765322


Q ss_pred             eeeEEEcCceeEEEecccCCC
Q 048589          262 LMQFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       262 ~~kf~Ingk~iWaRky~pk~~  282 (283)
                      .  ..++||++-++...||.+
T Consensus        80 g--~~~~gr~i~V~~a~~~~p   98 (101)
T d2cpea1          80 G--KDFQGSKLKVSLARKKPP   98 (101)
T ss_dssp             T--CEETTEECEEECSSCCCC
T ss_pred             C--CEECCEEEEEEEcCCCCC
Confidence            1  258999998888877754

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.3e-06  Score=65.31  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      +...|+||   +|.|  +|+++|+++|.+ ||+  |++|.+-.   .++..+||.|.|.+.+....++..-+.  ..|+|
T Consensus         5 ~~s~tlfV---~nlp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~g   76 (93)
T d1h2vz_           5 KKSCTLYV---GNLSFYTTEEQIYELFSK-SGD--IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TRLDD   76 (93)
T ss_dssp             TTCCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SEETT
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHH-HCC--cceeccccccccccccceEEEEECCHHHHHHHHHHhCC--CEECC
Confidence            34568988   8888  999999999986 999  77776643   567778999999999998887753221  25789


Q ss_pred             cee---EEEecc
Q 048589          270 KDV---RVRRFV  278 (283)
Q Consensus       270 k~i---WaRky~  278 (283)
                      +.+   |++-+.
T Consensus        77 r~i~V~~a~~~~   88 (93)
T d1h2vz_          77 RIIRTDWDAGFK   88 (93)
T ss_dssp             EECEEEEESCCC
T ss_pred             EEEEEEEcCCCC
Confidence            987   655443

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2e-06  Score=65.16  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      .+++||   +|.|  ++++||+++|.+ ||+ ++....+.+  +++..+||+|.|.+++....++..-+  ...|+||.+
T Consensus        18 ~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~ln--g~~~~g~~i   90 (102)
T d2cpza1          18 GANLFI---YHLPQEFGDQDLLQMFMP-FGN-VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN--GFQIGMKRL   90 (102)
T ss_dssp             TCCEEE---ESCCSSCCHHHHHHHHGG-GSC-CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT--TCEETTEEC
T ss_pred             CCEEEE---eCCCCCCCHHHHHHHHHh-hcc-ccccceeeecccCCCccceEEEeCCHHHHHHHHHHhC--CCEECCEEE
Confidence            467888   8988  999999999986 998 665545544  67778899999999999887765222  136899999


Q ss_pred             EEEecccCCCC
Q 048589          273 RVRRFVPKRAS  283 (283)
Q Consensus       273 WaRky~pk~~~  283 (283)
                      -++-..||+.+
T Consensus        91 ~V~~a~~k~~~  101 (102)
T d2cpza1          91 KVQLKRSKNDS  101 (102)
T ss_dssp             EEECCCCSCCC
T ss_pred             EEEEeCCCCCC
Confidence            99888887653

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.2e-06  Score=62.04  Aligned_cols=69  Identities=29%  Similarity=0.352  Sum_probs=54.1

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      ++||   +|.|  +||+||+++|.+ ||+  |++|.+-.   ++++..||.|.|.+++....++..-+.  ..++||.+.
T Consensus         2 slfV---~nL~~~~te~~l~~~F~~-~G~--i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g--~~~~gr~i~   73 (80)
T d1cvja1           2 SLYV---GDLHPDVTEAMLYEKFSP-AGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF--DVIKGKPVR   73 (80)
T ss_dssp             EEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTT--CEETTEECE
T ss_pred             EEEE---eCCCCcCCHHHHHHHHHH-hCC--EeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCC--CEECCEEEE
Confidence            4555   7888  999999999975 998  66666543   577789999999999999888864332  357999987


Q ss_pred             EE
Q 048589          274 VR  275 (283)
Q Consensus       274 aR  275 (283)
                      +.
T Consensus        74 v~   75 (80)
T d1cvja1          74 IM   75 (80)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.23  E-value=4e-07  Score=68.08  Aligned_cols=80  Identities=14%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEE-eec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIK-MGN-CRDQSLYARVIVRSPAFITLILGENELMQFNI  267 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~-m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I  267 (283)
                      ..+...+|+||   +|.|  ++++||+++|.+ ||.  |+.+. |.+ .++...||.|-|.+.+..+.+|. .  -...|
T Consensus         8 ~~~~~~~~ifV---~nL~~~~te~~l~~~F~~-~G~--i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~-~--~g~~~   78 (91)
T d1fjeb1           8 SESTTPFNLFI---GNLNPNKSVAELKVAISE-LFA--KNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-L--TGLKV   78 (91)
T ss_dssp             SSCSSSEEEEE---ECCCTTSCHHHHHHHHHH-HHH--HHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-G--GGEEE
T ss_pred             CCCCCCcEEEE---eCccCcchHHHHHHHHhc-CCc--EEEeeeeecCCCCccEEeEEeeCCHHHHHHHHh-c--CCcEE
Confidence            34667789988   8999  999999999996 996  33333 333 78888999999999999888874 2  22369


Q ss_pred             cCceeEEEecccC
Q 048589          268 HGKDVRVRRFVPK  280 (283)
Q Consensus       268 ngk~iWaRky~pk  280 (283)
                      +|+.+=+++..+|
T Consensus        79 ~g~~i~V~~ak~k   91 (91)
T d1fjeb1          79 FGNEIKLEKPKGR   91 (91)
T ss_dssp             TTEEEEEECCCCS
T ss_pred             CCEEEEEEecCCC
Confidence            9999988876554

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.2e-06  Score=64.77  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      .++..|+||   +|.|  +++++|+++|.+ ||+  |.+|.|-.   +++...||+|.|.+.+....++..-+.  ..|+
T Consensus         5 ~~~~~~i~V---~nLp~~~t~~~l~~~f~~-~G~--v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g--~~~~   76 (90)
T d2cq0a1           5 ADDNATIRV---TNLSEDTRETDLQELFRP-FGS--ISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYD   76 (90)
T ss_dssp             CSSSEEEEE---ESCCTTCCHHHHHTTSTT-TCC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEET
T ss_pred             CCCCCEEEE---ECCCCCCCHHHHHHHHHH-hcc--cccccccccccccccccceeEEECCHHHHHHHHHHhCC--CEEC
Confidence            456678888   8999  999999999976 999  66776654   577888999999999887777653221  3679


Q ss_pred             CceeEEEecccCC
Q 048589          269 GKDVRVRRFVPKR  281 (283)
Q Consensus       269 gk~iWaRky~pk~  281 (283)
                      |+.+=++.-.||.
T Consensus        77 g~~i~v~~akp~~   89 (90)
T d2cq0a1          77 HLILNVEWAKPST   89 (90)
T ss_dssp             TEECEEEESSCCC
T ss_pred             CEEEEEEeeeCCC
Confidence            9999877766764

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.8e-06  Score=65.36  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD  271 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~  271 (283)
                      +....|+||   +|.|  +||+||++||.. ||. +-..+.+...++...||.|.|.+++..+.+|. .+  ...|+||.
T Consensus        12 ~~~~~~v~v---~nLp~~~te~dl~~~F~~-~~~-~~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~-~~--~~~i~gR~   83 (102)
T d1weza_          12 STTGHCVHM---RGLPYRATENDIYNFFSP-LNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KD--KANMQHRY   83 (102)
T ss_dssp             CSSSCEEEE---ESCCTTCCHHHHHHSSCS-CCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TS--SCCSSSSC
T ss_pred             CCCCCEEEE---eCCCCcCCHHHHHHHHhc-cCc-ceeeeEEecCCcceEEEEEEECCHHHHHHHHH-cC--CCEECCEE
Confidence            444568877   9999  999999999986 785 32233332267788999999999999999886 22  22699999


Q ss_pred             eEEEecccCC
Q 048589          272 VRVRRFVPKR  281 (283)
Q Consensus       272 iWaRky~pk~  281 (283)
                      |.+....++.
T Consensus        84 I~V~~s~~~~   93 (102)
T d1weza_          84 VELFLNSTAG   93 (102)
T ss_dssp             CEEEEECCCC
T ss_pred             EEEEEcCCCC
Confidence            9988776654

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.9e-06  Score=63.21  Aligned_cols=77  Identities=14%  Similarity=0.070  Sum_probs=59.1

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..+|+||   +|.|  ++++||++||.. ||.  ++...+.+   +++...||+|.|.+++....++.= +  ...|+|+
T Consensus        14 p~~~v~V---~nLp~~~te~~l~~~f~~-~g~--~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~-~--~~~~~gr   84 (104)
T d1wi8a_          14 PPYTAFL---GNLPYDVTEESIKEFFRG-LNI--SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL-N--EESLGNK   84 (104)
T ss_dssp             SCEEEEE---ESCCSSCCHHHHHHHTTT-SCE--EEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGG-G--TCEETTE
T ss_pred             CCCEEEE---eCCCCcCCHHHHHHHHHH-hcc--ccceeeeeeccCCCcceeeeEEECCHHHHHHHHHc-C--CCEECCE
Confidence            3478888   8999  999999999986 885  44444433   566778999999999998887751 1  2368999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-++...|++
T Consensus        85 ~l~V~~a~~~~   95 (104)
T d1wi8a_          85 RIRVDVADQAQ   95 (104)
T ss_dssp             ECEEEECCCCC
T ss_pred             EEEEEECCCCC
Confidence            99888777664

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.2e-06  Score=61.70  Aligned_cols=73  Identities=21%  Similarity=0.255  Sum_probs=56.4

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      |+||   +|.|  ++++||+++|.+ ||+  |+++.+- +  .++...||.|.|.+++....++..-+.  ..|+|+.+-
T Consensus         4 ~l~V---~nLp~~~te~~l~~~f~~-~G~--v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~g~~l~   75 (82)
T d1fxla1           4 NLIV---NYLPQNMTQEEFRSLFGS-IGE--IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIK   75 (82)
T ss_dssp             EEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEECE
T ss_pred             EEEE---ECCCCCCCHHHHHHHHHH-hCC--cccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            5777   8999  999999999997 998  5566654 3  678888999999999998877653221  257999987


Q ss_pred             EEeccc
Q 048589          274 VRRFVP  279 (283)
Q Consensus       274 aRky~p  279 (283)
                      +....|
T Consensus        76 v~~AkP   81 (82)
T d1fxla1          76 VSYARP   81 (82)
T ss_dssp             EEECCC
T ss_pred             EEEeeC
Confidence            765444

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.6e-06  Score=70.10  Aligned_cols=80  Identities=19%  Similarity=0.310  Sum_probs=64.5

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEE-eec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIK-MGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~-m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      |++-||+||   +|.|  +|++||+++|.+ ||+  |+++. +.+  .+...+||.|.|.+.+.....+....   ..++
T Consensus         3 p~~~r~lfV---~nLp~~~te~~L~~~F~~-~G~--v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~~   73 (183)
T d1u1qa_           3 PEQLRKLFI---GGLSFETTDESLRSHFEQ-WGT--LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP---HKVD   73 (183)
T ss_dssp             CHHHHEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS---CEET
T ss_pred             CCCCCEEEE---ECCCCCCCHHHHHHHHHH-cCC--EEEEEeeecccCCCccCceecccCCHHHHHHHHHhcC---Cccc
Confidence            455699998   8888  999999999965 999  45554 444  67888999999999999998887533   2589


Q ss_pred             CceeEEEecccCCC
Q 048589          269 GKDVRVRRFVPKRA  282 (283)
Q Consensus       269 gk~iWaRky~pk~~  282 (283)
                      ++.++.+++.++..
T Consensus        74 ~~~~~~~~~~~~~~   87 (183)
T d1u1qa_          74 GRVVEPKRAVSRED   87 (183)
T ss_dssp             TEECEEEECCCTTG
T ss_pred             ccchhhhhhhhccc
Confidence            99999999887653

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.17  E-value=2.2e-06  Score=63.22  Aligned_cols=78  Identities=21%  Similarity=0.196  Sum_probs=58.3

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .+.+++||   +|.|  ++++||+++|.+ ||+  |++|.+- +  +++...||.|.|.+.+.....+..-+.  ..++|
T Consensus         5 ~~~~~l~V---~nL~~~~t~~~l~~~F~~-~G~--i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng--~~l~g   76 (88)
T d1rk8a_           5 VEGWILFV---TSIHEEAQEDEIQEKFCD-YGE--IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMG   76 (88)
T ss_dssp             C-CEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC--cccccccccccccccccceeEEECCHHHHHHHHHHcCC--CEECC
Confidence            45578887   8888  999999999975 998  6666554 3  678889999999999987776642111  25799


Q ss_pred             ceeEEEecccC
Q 048589          270 KDVRVRRFVPK  280 (283)
Q Consensus       270 k~iWaRky~pk  280 (283)
                      +.+=+.-..||
T Consensus        77 ~~l~V~~a~~k   87 (88)
T d1rk8a_          77 QTIQVDWCFVK   87 (88)
T ss_dssp             EECEEEESEEC
T ss_pred             EEEEEEEecCC
Confidence            99877655554

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2e-06  Score=62.30  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEE-Eeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEecc
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDI-KMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFV  278 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v-~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRky~  278 (283)
                      |.+|.|  +|++||+++|.+ ||+ .++.+ .+.+  +++...||.|.|.+++....++...+-  ..++|+.+=++...
T Consensus         2 fV~nLp~~~te~~l~~~F~~-~G~-i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g--~~~~gr~l~v~~a~   77 (83)
T d1x5ta1           2 FIGNLDPEIDEKLLYDTFSA-FGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG--QYLCNRPITVSYAF   77 (83)
T ss_dssp             EEECCCTTCCHHHHHHHHHT-TSC-BSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT--CEETTEECEEEESC
T ss_pred             EEcCCCCcCcHHHHHHHHHH-hCc-eeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCC--cEECCEEEEEEEec
Confidence            347888  999999999986 998 55543 3444  678899999999999999988864332  25799999999888


Q ss_pred             cCCC
Q 048589          279 PKRA  282 (283)
Q Consensus       279 pk~~  282 (283)
                      ||+.
T Consensus        78 ~k~~   81 (83)
T d1x5ta1          78 KKDS   81 (83)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            8864

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.6e-06  Score=62.22  Aligned_cols=75  Identities=11%  Similarity=0.037  Sum_probs=59.8

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEE
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRV  274 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWa  274 (283)
                      .||+||   +|.|  ++++||+++|.+ ||+  |+.+.+   +....||.|.|.+.+.....+..-+  ...|+|+.+=+
T Consensus         8 ~k~l~V---~nLp~~~te~~l~~~F~~-~g~--i~~~~~---~~~rg~afV~f~~~~~A~~Ai~~l~--~~~i~g~~i~V   76 (86)
T d2cpda1           8 VKILYV---RNLMLSTSEEMIEKEFNN-IKP--GAVERV---KKIRDYAFVHFSNREDAVEAMKALN--GKVLDGSPIEV   76 (86)
T ss_dssp             CCEEEE---ESCCTTCCHHHHHHHHHT-TST--TCEEEE---EECSSEEEEEESSHHHHHHHHHHHS--SEEETTEEEEE
T ss_pred             CCEEEE---cCCCCCCCHHHHHHhhcc-cce--eeeEEE---ccccEEEEEEeCCHHHHHHHHHHcC--CCEECCEEEEE
Confidence            489988   8999  999999999986 997  555555   3356799999999999888776433  24689999988


Q ss_pred             EecccCCC
Q 048589          275 RRFVPKRA  282 (283)
Q Consensus       275 Rky~pk~~  282 (283)
                      +-..|+++
T Consensus        77 ~~akP~~~   84 (86)
T d2cpda1          77 TLAKPVDK   84 (86)
T ss_dssp             ECCCCCCC
T ss_pred             EeccCCCC
Confidence            87778875

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.15  E-value=2.2e-06  Score=62.43  Aligned_cols=64  Identities=13%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcCce
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENELMQFNIHGKD  271 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ingk~  271 (283)
                      .+|+||   +|.|  ++++||+++|.+ ||+  |.++.+-.  ....||.|.|.+.+.....   |+|..    ..+|+.
T Consensus         8 ~~tl~V---~nLp~~~t~~~l~~~f~~-~G~--i~~v~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~----~~~~~~   75 (83)
T d2b0ga1           8 NQILFL---TNLPEETNEMMLSMLFNQ-FPG--FKEVRLVP--NRHDIAFVEFTTELQSNAAKEALQGFK----ITPTHA   75 (83)
T ss_dssp             CSEEEE---ESCCTTCCHHHHHHHHTT-STT--EEEEEECT--TTCSCEEEEESSHHHHHHHHHHHTTCB----SSTTCB
T ss_pred             CCEEEE---ECCCCCCCHHHHHhhhcc-Ccc--EEEeeeec--ccceeEEEecCCHHHHHHHHHHhCCcE----eCCCcE
Confidence            589998   8888  999999999976 999  66776633  2356999999999986666   44543    235666


Q ss_pred             e
Q 048589          272 V  272 (283)
Q Consensus       272 i  272 (283)
                      +
T Consensus        76 i   76 (83)
T d2b0ga1          76 M   76 (83)
T ss_dssp             C
T ss_pred             E
Confidence            6

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.8e-06  Score=66.63  Aligned_cols=79  Identities=22%  Similarity=0.360  Sum_probs=63.6

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEE-Eeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDI-KMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v-~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ....+++||   +|.|  +|++||+++|.+ ||.  |+.+ .+.+  ++++.+||.|-|.+++..+.+|.-..   -.|+
T Consensus        94 ~~~~~~i~V---~~lp~~~te~~L~~~f~~-~G~--v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~---~~~~  164 (183)
T d1u1qa_          94 HLTVKKIFV---GGIKEDTEEHHLRDYFEQ-YGK--IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY---HTVN  164 (183)
T ss_dssp             TCCCSEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSSC---EEET
T ss_pred             ccccceeEE---ccCCCcCCHHHHhhhhcc-CCc--eeeeeeecccccCccceeEEEEECCHHHHHHHHHhCC---CeEC
Confidence            445678888   7888  999999999986 998  4555 4443  67889999999999999999987433   2589


Q ss_pred             CceeEEEecccCC
Q 048589          269 GKDVRVRRFVPKR  281 (283)
Q Consensus       269 gk~iWaRky~pk~  281 (283)
                      |+.+=+++..||.
T Consensus       165 G~~i~V~~A~~k~  177 (183)
T d1u1qa_         165 GHNCEVRKALSKQ  177 (183)
T ss_dssp             TEEEEEEECCCHH
T ss_pred             CEEEEEEecCCcc
Confidence            9999999888863

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.6e-06  Score=62.58  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=58.2

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEecc
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRFV  278 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRky~  278 (283)
                      |.+|.|  +|++||+++|.+ ||+  |+++.|-.   ++++..||+|.|.+++.....+..-+.  ..++|+.+=++.-.
T Consensus         5 fV~nlp~~~te~~l~~~F~~-~G~--v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~--~~l~g~~l~V~~A~   79 (85)
T d2u2fa_           5 FIGGLPNYLNDDQVKELLTS-FGP--LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQLGDKKLLVQRAS   79 (85)
T ss_dssp             EEETCCSSCCSHHHHHHHTS-SSC--EEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSS--CCCSSSCCEEEECC
T ss_pred             EEECCCCCCCHHHHHHHHHh-cCc--cceEEeeccccccccceeEEEEECCHHHHHHHHHHhCC--CEECCEEEEEEECC
Confidence            348988  999999999986 999  66666643   689999999999999998887764222  35899998777766


Q ss_pred             cCCC
Q 048589          279 PKRA  282 (283)
Q Consensus       279 pk~~  282 (283)
                      |+..
T Consensus        80 ~~~~   83 (85)
T d2u2fa_          80 VGAK   83 (85)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6544

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.10  E-value=2.6e-06  Score=63.66  Aligned_cols=80  Identities=26%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      ..++.|||||   +|.|  ++++||+++|.+ ||.  |..+.  ..+....||.|.|.+.+....++..-+  ...++|+
T Consensus        12 ~~~~~~~l~V---~nL~~~~te~~l~~~F~~-~g~--v~~~~--~~~~~~~~afV~f~~~~~A~~A~~~l~--~~~~~gr   81 (96)
T d1fjca_          12 KVRAARTLLA---KNLSFNITEDELKEVFED-ALE--IRLVS--QDGKSKGIAYIEFKSEADAEKNLEEKQ--GAEIDGR   81 (96)
T ss_dssp             TTTGGGEEEE---ESCCSSCCHHHHHHHHCS-EEE--ECCEE--ETTEEEEEEEEEESSHHHHHHHHHHTT--EEEETTE
T ss_pred             cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-ccc--ceeee--ecCccccEEEEEeCCHHHHHHHHHHcC--CCEECCE
Confidence            4567799988   8888  999999999986 996  44443  257778999999999999888887544  3478999


Q ss_pred             eeEEEecccCCC
Q 048589          271 DVRVRRFVPKRA  282 (283)
Q Consensus       271 ~iWaRky~pk~~  282 (283)
                      .+=++...||+.
T Consensus        82 ~i~V~~a~~k~~   93 (96)
T d1fjca_          82 SVSLYYTGEKGG   93 (96)
T ss_dssp             EEEEEECSSSCC
T ss_pred             EEEEEEeCCCCC
Confidence            999988888764

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=5.5e-06  Score=62.53  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=53.0

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcCc
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENELMQFNIHGK  270 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ingk  270 (283)
                      ..+|+||   ++.|  ++++||+++|.+ ||+  |+.|.|.   ....||.|.|.+.+.....   |+|..     ++|+
T Consensus         9 ~~~~l~V---~nLp~~~t~~~L~~~F~~-fG~--I~~v~l~---~~kg~afV~f~~~~~A~~A~~~lng~~-----~~gr   74 (111)
T d1whxa_           9 SKTVILA---KNLPAGTLAAEIQETFSR-FGS--LGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSK-----FHHV   74 (111)
T ss_dssp             EEEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCB-----SSSS
T ss_pred             CCCEEEE---ECCCCCCCHHHHHhhhhc-cCC--ccEEEee---ccCceEEEEEcCHHHHHHHHHHHcCCc-----cCCC
Confidence            3467877   8998  999999999975 999  8888883   4568999999999997776   55653     6788


Q ss_pred             eeEEE
Q 048589          271 DVRVR  275 (283)
Q Consensus       271 ~iWaR  275 (283)
                      .+.+.
T Consensus        75 ~l~v~   79 (111)
T d1whxa_          75 PLYLE   79 (111)
T ss_dssp             BCEEE
T ss_pred             eEEEE
Confidence            88654

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.1e-06  Score=62.20  Aligned_cols=75  Identities=13%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      +-.||+||   +|.|  ++++||+++|.+ ||.  |+.+.|.+   ...||.|-|.+.+.....+.........|+|+.+
T Consensus         6 ~Ps~~l~V---~nLp~~~t~~~L~~~f~~-~G~--i~~v~~~~---~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l   76 (88)
T d2cq1a1           6 APSRVLHI---RKLPGEVTETEVIALGLP-FGK--VTNILMLK---GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI   76 (88)
T ss_dssp             SCCSEEEE---ESCCTTCCHHHHHHTTTT-TSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHhc-ccc--cccccccc---cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEE
Confidence            34689999   7777  999999999976 998  77777754   3469999999998877776533333357999999


Q ss_pred             EEEecc
Q 048589          273 RVRRFV  278 (283)
Q Consensus       273 WaRky~  278 (283)
                      +++---
T Consensus        77 ~v~~sk   82 (88)
T d2cq1a1          77 YIQYSN   82 (88)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            987543

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=8.5e-06  Score=58.64  Aligned_cols=68  Identities=12%  Similarity=0.174  Sum_probs=53.0

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR  276 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk  276 (283)
                      |.+|.|  ++++||+++|.+ ||.  |+++.+..  .++...||.|.|.+++.....+...+.  ..++||.+-++-
T Consensus         4 ~V~nLp~~~~~~~l~~~F~~-~G~--v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~l~V~~   75 (78)
T d1no8a_           4 LVSNLDFGVSDADIQELFAE-FGT--LKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG--VPLDGRPMNIQL   75 (78)
T ss_dssp             EEESCCTTCCHHHHHHHHHH-HSC--EEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTT--CEETTEECEEEE
T ss_pred             EEECCCCCCCHHHHHHHHHH-hCC--CeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCC--CEECCEEEEEEE
Confidence            348888  999999999996 998  67777764  778889999999999887776652111  268999887653

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.9e-06  Score=62.80  Aligned_cols=77  Identities=22%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             CceEEEEccCCcc--CCHHHHHHH----HHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          197 DRTLFATFSKGHP--ITRAELFEF----FTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~f----Ft~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      +||+||   +|.|  ++++||++.    |. .||+  |+.|.+.+.++...||.|.|.+.+..+.++...+.  ..++|+
T Consensus         3 ~~tl~V---~nLp~~~t~~dl~~~l~~~f~-~~G~--i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~--~~~~g~   74 (91)
T d1nu4a_           3 NHTIYI---NNLNEKIKKDELKKSLHAIFS-RFGQ--ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPFYDK   74 (91)
T ss_dssp             CSEEEE---ESCCTTSCHHHHHHHHHHHHG-GGSC--EEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred             CCEEEE---eCCCCCCCHHHHHHHHHHHhc-cccc--ccceEEeeeccCCCceEEEECCHHHHHHHHHHhCC--CEECCE
Confidence            589998   8888  999999765    45 5998  77788866666789999999999998888864332  268999


Q ss_pred             eeEEEecccCC
Q 048589          271 DVRVRRFVPKR  281 (283)
Q Consensus       271 ~iWaRky~pk~  281 (283)
                      .+-++...++.
T Consensus        75 ~l~v~~ak~~~   85 (91)
T d1nu4a_          75 PMRIQYAKTDS   85 (91)
T ss_dssp             ECEEEECSSCC
T ss_pred             EEEEEEeCCCc
Confidence            99887666553

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.5e-05  Score=59.33  Aligned_cols=79  Identities=11%  Similarity=0.207  Sum_probs=60.0

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHHhCCC-CeeeEEE
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLILGEN-ELMQFNI  267 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~vL~g~-~~~kf~I  267 (283)
                      ...+++||   +|.|  ++++||+++|.. ||+  |.+|.|-.    +++..+||+|-|.+.+.....++.- +.  ..+
T Consensus         6 ~~~~~l~V---~nLp~~~~e~~l~~~F~~-~G~--i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~--~~~   77 (94)
T d2cpha1           6 QTTSKILV---RNIPFQANQREIRELFST-FGE--LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS--THL   77 (94)
T ss_dssp             SCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC--CBS
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC--ceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCC--cEE
Confidence            45578888   8988  999999999986 998  77877732    5788999999999999877666421 11  148


Q ss_pred             cCceeEEEecccCC
Q 048589          268 HGKDVRVRRFVPKR  281 (283)
Q Consensus       268 ngk~iWaRky~pk~  281 (283)
                      +|+.+-++...++.
T Consensus        78 ~Gr~l~V~~A~~~~   91 (94)
T d2cpha1          78 YGRRLVLEWADSEV   91 (94)
T ss_dssp             SSCBCEEEECCCCC
T ss_pred             CCEEEEEEEcCCCC
Confidence            99999776655543

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.9e-06  Score=61.69  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=57.2

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      ++.+|+||   +|.|  +++++|+++|.+ ||+  |++|.+..   ...||+|.|.+.+.....+...+  ...|+|+.+
T Consensus        16 ~~~~~l~v---~nL~~~~te~~L~~~F~~-fG~--i~~v~i~~---~kg~afV~f~~~~~A~~Ai~~l~--~~~i~g~~l   84 (96)
T d1x4ga1          16 PKNCTVYC---GGIASGLTDQLMRQTFSP-FGQ--IMEIRVFP---EKGYSFVRFSTHESAAHAIVSVN--GTTIEGHVV   84 (96)
T ss_dssp             SSCCEEEE---ECCSSCCCHHHHHHHHHH-HSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHT--TCEETTEEC
T ss_pred             CCCCEEEE---cCCCCCCCHHHHHHHHHH-hCC--ceEEEEEe---cceEEEEEECCHHHHHHHHHHhC--CCEECCEEE
Confidence            44578988   8888  999999999996 999  78888743   36799999999988777654211  135899999


Q ss_pred             EEEecccC
Q 048589          273 RVRRFVPK  280 (283)
Q Consensus       273 WaRky~pk  280 (283)
                      .+.-..|+
T Consensus        85 ~v~~ak~~   92 (96)
T d1x4ga1          85 KCYWGKES   92 (96)
T ss_dssp             EEECCCCC
T ss_pred             EEEEcCCC
Confidence            87654443

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.01  E-value=2.3e-06  Score=62.53  Aligned_cols=58  Identities=19%  Similarity=0.191  Sum_probs=47.7

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~  258 (283)
                      .+++++||   +|.|  ++++||+++|.+ ||+  |+++.+-.   ++++..||.|.|.+.+.....+.
T Consensus         4 ~~~t~lfV---~nlp~~~te~~l~~~F~~-~G~--i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~   66 (85)
T d1b7fa2           4 IKDTNLYV---TNLPRTITDDQLDTIFGK-YGS--IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS   66 (85)
T ss_dssp             TTTCEEEE---ESCCTTCCHHHHHHHHTS-SSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHh-hCC--EeeeeeecccccccCceeEEEEECCHHHHHHHHH
Confidence            35678888   7888  999999999986 998  66666543   67788899999999999777765

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=6.3e-06  Score=62.16  Aligned_cols=70  Identities=10%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHH---hCCCCeeeEE
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLI---LGENELMQFN  266 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~v---L~g~~~~kf~  266 (283)
                      ...|.+++||   +|.|  ++++||+++|.+ ||+ ......+.+ .++...||.|.|.+++..+.+   |+|..     
T Consensus        14 ~~~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~-i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~-----   83 (101)
T d1x5oa1          14 QEQDPTNLYI---SNLPLSMDEQELENMLKP-FGQ-VISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF-----   83 (101)
T ss_dssp             CCCCTTEEEE---ESCCTTCCHHHHHHTTTT-TSC-EEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC-----
T ss_pred             ccCCCCEEEE---eCCCCCCCHHHHHHHHhh-ccc-ccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCE-----
Confidence            4456689988   7999  999999999986 999 544444444 677788999999999987665   45643     


Q ss_pred             EcCcee
Q 048589          267 IHGKDV  272 (283)
Q Consensus       267 Ingk~i  272 (283)
                      |+||.+
T Consensus        84 i~gr~~   89 (101)
T d1x5oa1          84 IKTPPG   89 (101)
T ss_dssp             CCCCTT
T ss_pred             ECCcCC
Confidence            667664

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=9e-06  Score=61.57  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=56.8

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      +..+++||   +|.|  ++|+||+++|.+ ||.  |+.+.|-+   ...||.|-|.+++.....+.-.+...+.|+|+.+
T Consensus        13 ~ps~~l~v---~nlp~~~te~~l~~~F~~-fG~--I~~~~~~~---~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l   83 (104)
T d1wexa_          13 SVSPVVHV---RGLCESVVEADLVEALEK-FGT--ICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA   83 (104)
T ss_dssp             CCCSEEEE---ESCCSSCCHHHHHHHHTT-TSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHhhhh-ccc--ceEEEEEe---cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEE
Confidence            44689988   7888  999999999986 998  78888843   4679999999998877776533334567888888


Q ss_pred             EEEe
Q 048589          273 RVRR  276 (283)
Q Consensus       273 WaRk  276 (283)
                      -++-
T Consensus        84 ~v~~   87 (104)
T d1wexa_          84 FFNY   87 (104)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6643

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.1e-06  Score=61.35  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhC
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~  258 (283)
                      ..++++||   +|.|  ++++||+++|.+ ||+  |+++.+- +  +++...||.|.|.+++..+.++.
T Consensus         4 ~k~~~lfV---~nLp~~~te~~L~~~F~~-~G~--v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~   66 (85)
T d1fxla2           4 IRDANLYV---SGLPKTMTQKELEQLFSQ-YGR--IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK   66 (85)
T ss_dssp             GTTCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC--ccccccccccccccCCCeeEEEEcCHHHHHHHHH
Confidence            34678888   8999  999999999965 999  5555553 3  57788899999999998777654

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=1e-05  Score=60.56  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      ..|||||   +|.|  ++++||+++|.+ ||+  |+.+.+..   ...||.|-|.+.+....++..-+...+.-+++++.
T Consensus        16 Ps~tl~V---~nLp~~~t~~~l~~~f~~-~G~--i~~~~~~~---~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~   86 (97)
T d1whya_          16 PTTRLWV---GGLGPNTSLAALAREFDR-FGS--IRTIDHVK---GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR   86 (97)
T ss_dssp             CCSCEEE---ECCCSSCCHHHHHHHHHT-TSC--EEEEEECS---SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred             CCCEEEE---cCCCCCCCHHHHHHHHHh-hcc--cceEeeec---cccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEE
Confidence            3689998   7877  999999999986 998  77777743   35699999999988777665323233322335676


Q ss_pred             EEecccCCC
Q 048589          274 VRRFVPKRA  282 (283)
Q Consensus       274 aRky~pk~~  282 (283)
                      +.--.+++.
T Consensus        87 v~~ak~~~~   95 (97)
T d1whya_          87 VDFAKSGPS   95 (97)
T ss_dssp             EEECCCCCC
T ss_pred             EEeCCCCCC
Confidence            655555543

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.9e-06  Score=65.34  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      +.+..+|+||   +|.|  +|++||++||.. ||. ....+.+-.  .+...+||.|.|.+.+..+.+|. .+..  .|+
T Consensus        14 ~~~~~~~i~v---~nLp~~~t~~di~~~F~~-~g~-~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~--~i~   85 (112)
T d1wela1          14 PHEAGFCVYL---KGLPFEAENKHVIDFFKK-LDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ--YMG   85 (112)
T ss_dssp             CCCCCCEEEE---ECCCTTCCHHHHHHHSCS-SCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB--CST
T ss_pred             CCCCCeEEEE---ecCCCcCcHHHHhhHHhh-ccc-cccceeeecCcccceeeEEEEEECCHHHHHHHHH-cCCC--cCC
Confidence            3556678877   9999  999999999975 996 444444432  78889999999999999999986 2211  489


Q ss_pred             CceeEEEeccc
Q 048589          269 GKDVRVRRFVP  279 (283)
Q Consensus       269 gk~iWaRky~p  279 (283)
                      |+.|-++.-.+
T Consensus        86 gR~i~V~~~~~   96 (112)
T d1wela1          86 NRFIQVHPITK   96 (112)
T ss_dssp             TSCBEEEEECH
T ss_pred             CEEEEEEEcCh
Confidence            99998876544

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=4.8e-06  Score=61.86  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             CCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589          194 ADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK  270 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk  270 (283)
                      .+..|++||   +|+|   +|++|+.++|.. ||.  |+++.|-.   ...||.|.|.+.+.....+..-+.-.+.++||
T Consensus         5 ~~~sr~v~v---~nl~~~~~t~~eL~~lF~~-fG~--I~~i~i~~---~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr   75 (89)
T d1x4da1           5 VETRRVVHI---MDFQRGKNLRYQLLQLVEP-FGV--ISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGK   75 (89)
T ss_dssp             CCCCCEEEE---ESCCCSSSHHHHHHTTTGG-GSC--EEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred             CCCCcEEEE---ECCCCCcCCHHHHHHHHHh-hCC--eEEEEeec---cceEEEEEEcchhhHHHHHHHHhhCCCccCCc
Confidence            456789988   7888   679999999998 999  77888743   34589999999998777776333334589999


Q ss_pred             eeEE
Q 048589          271 DVRV  274 (283)
Q Consensus       271 ~iWa  274 (283)
                      .+-+
T Consensus        76 ~l~V   79 (89)
T d1x4da1          76 PVRV   79 (89)
T ss_dssp             ECEE
T ss_pred             eEEE
Confidence            8833

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=8.6e-06  Score=59.09  Aligned_cols=72  Identities=17%  Similarity=0.177  Sum_probs=53.7

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CC---CCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEE
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CR---DQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVR  275 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~---~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaR  275 (283)
                      |.+|.|  +|++||+++|.+ ||+  |+++.|-.   ++   ...+||.|.|.+++.....+...+.  ..++|+.+-++
T Consensus         2 fV~nLp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~--~~~~g~~i~V~   76 (85)
T d2cpfa1           2 FIKNLNFSTTEETLKGVFSK-VGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--HTVDGHKLEVR   76 (85)
T ss_dssp             EEESCCTTCCHHHHHHHHHT-TSC--EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--CEETTEECEEE
T ss_pred             EEcCCCCCCCHHHHHHHHHH-hCC--ccccceecccccccccccceEEEEEECCHHHHHHHHHHhCC--CEECCEEEEEE
Confidence            448888  999999999986 998  66666643   22   2357999999999998877653221  26899999887


Q ss_pred             ecccC
Q 048589          276 RFVPK  280 (283)
Q Consensus       276 ky~pk  280 (283)
                      ...++
T Consensus        77 ~a~~~   81 (85)
T d2cpfa1          77 ISERA   81 (85)
T ss_dssp             CSSCS
T ss_pred             ECCCC
Confidence            76544

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.4e-05  Score=57.31  Aligned_cols=70  Identities=24%  Similarity=0.388  Sum_probs=52.6

Q ss_pred             CceEEEEccCCc-c--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          197 DRTLFATFSKGH-P--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       197 ~RT~FvTFS~G~-P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      .++|||   .+. |  +++++++++|.+ ||.  |++|.|-.  ....||.|.|.+++.....+...+.  ..++|+.+-
T Consensus         2 ~~~l~V---~nL~p~~~te~~L~~~F~~-fG~--I~~v~i~~--~~kg~afV~f~~~~~A~~ai~~lng--~~l~g~~l~   71 (109)
T d2adca1           2 NSVLLV---SNLNPERVTPQSLFILFGV-YGD--VQRVKILF--NKKENALVQMADGNQAQLAMSHLNG--HKLHGKPIR   71 (109)
T ss_dssp             CSEEEE---ESCCTTTCCHHHHHHHHHH-HTC--EEEEEECC--TTSCCEEEEESCHHHHHHHHHHHTT--CBCSSSBCE
T ss_pred             CCEEEE---eCCCcccCCHHHHHHHHhh-ccc--cceEEEEe--cccceEEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            367877   777 4  899999999996 999  88887743  2357999999999987777653111  146888887


Q ss_pred             EEe
Q 048589          274 VRR  276 (283)
Q Consensus       274 aRk  276 (283)
                      +..
T Consensus        72 v~~   74 (109)
T d2adca1          72 ITL   74 (109)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            764

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4.6e-05  Score=57.31  Aligned_cols=76  Identities=11%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             CCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      ...+..+|||   +|.|   ++++||+++|.+ ||.  |.++.|.     ..||+|.|.+.+..+..+...+-.  .++|
T Consensus        11 ~~~~~~~lfV---~nL~~~~~~~~~L~~~F~~-~G~--i~~~~i~-----rg~aFV~f~~~~~A~~Ai~~lng~--~~~g   77 (98)
T d1wf2a_          11 PRSMNSRVFI---GNLNTLVVKKSDVEAIFSK-YGK--IVGCSVH-----KGFAFVQYVNERNARAAVAGEDGR--MIAG   77 (98)
T ss_dssp             CSSCCCCEEE---EEECTTTCCHHHHHHSSTT-SSC--EEEEEEE-----TEEEEEEESSHHHHHHHHHTTTTC--EETT
T ss_pred             CCCCCcEEEE---eCCCcccCCHHHHHHHHhh-cCC--EEEEEEe-----CCeEEEEECCHHHHHHHHHHcCCC--EECC
Confidence            3455567887   7874   577889999996 998  8888884     469999999999988876533222  5799


Q ss_pred             ceeEEEecccCC
Q 048589          270 KDVRVRRFVPKR  281 (283)
Q Consensus       270 k~iWaRky~pk~  281 (283)
                      +.+-++...+++
T Consensus        78 ~~l~V~~a~~~~   89 (98)
T d1wf2a_          78 QVLDINLAAEPK   89 (98)
T ss_dssp             EECEEEETTSCC
T ss_pred             EEEEEEECCCCC
Confidence            999777665543

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=1.6e-05  Score=57.77  Aligned_cols=69  Identities=16%  Similarity=0.104  Sum_probs=52.4

Q ss_pred             EccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEE
Q 048589          203 TFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVR  275 (283)
Q Consensus       203 TFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaR  275 (283)
                      -|.+|.|  ++++||++||.+ ||. ....+.|-+  .++..+||.|.|.+++..+..+...+..  .|+|+.|-++
T Consensus        12 l~v~nLp~~~~~~di~~~F~~-~~~-~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~--~l~gr~i~v~   84 (86)
T d2cqpa1          12 IKVQNMPFTVSIDEILDFFYG-YQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLV   84 (86)
T ss_dssp             EEEESCCTTCCHHHHHHHTTT-SCC-CTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC--EETTEECEEE
T ss_pred             EEEECCCCCCCHHHHHHHHhh-ccc-ceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCC--EECCEEEEEE
Confidence            3449999  999999999997 897 555444443  7888899999999999988876532211  4789887654

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.7e-05  Score=56.82  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE-cCc
Q 048589          197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI-HGK  270 (283)
Q Consensus       197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I-ngk  270 (283)
                      .+|+||   ++.|  ++++||+++|.+ ||. .++.+.+  .+....||.|-|.+++.....+.   |..     | +|+
T Consensus        10 s~tL~V---~NLp~~~te~~l~~~F~~-~G~-v~~~~~~--~~~~~~~afV~f~~~~~A~~A~~~l~~~~-----i~~g~   77 (88)
T d2adca2          10 SATLHL---SNIPPSVSEEDLKVLFSS-NGG-VVKGFKF--FQKDRKMALIQMGSVEEAVQALIDLHNHD-----LGENH   77 (88)
T ss_dssp             CSEEEE---ECCCTTCCHHHHHHHHHT-TSC-CEEEEEE--CSSSTTCEEEEESSHHHHHHHHHHHTTCB-----SSSSC
T ss_pred             CCEEEE---ECCCCCCCHHHHHHHhhc-cCC-EEEEEEe--eecccceeEEEECCHHHHHHHHHhccCCE-----ecCCC
Confidence            689998   5888  999999999996 998 5555544  34456799999999998666554   543     3 577


Q ss_pred             eeEEE
Q 048589          271 DVRVR  275 (283)
Q Consensus       271 ~iWaR  275 (283)
                      .+-+.
T Consensus        78 ~l~v~   82 (88)
T d2adca2          78 HLRVS   82 (88)
T ss_dssp             BCEEE
T ss_pred             EEEEE
Confidence            76543

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=1.1e-05  Score=60.84  Aligned_cols=74  Identities=11%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             CCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589          193 DADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG  269 (283)
Q Consensus       193 ~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing  269 (283)
                      .++..|++||   +|.|   +|++||+++|.+ ||.  |.+|.|-.   ...||.|.|.+++.....+.....-.+.++|
T Consensus        14 ~~~~~~~l~v---~nLp~~~~te~~l~~~F~~-fG~--V~~v~~~~---~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~g   84 (99)
T d1x4fa1          14 KQELGRVIHL---SNLPHSGYSDSAVLKLAEP-YGK--IKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQG   84 (99)
T ss_dssp             SSCCCCEEEE---ESCCCSSCCSHHHHTTTTT-TSC--CSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred             CCCCCCEEEE---eCCcCCccCHHHHHhhhcc-ccc--eeEEEEee---cCCcEEEEecchHHHHHHHHHHhcCCceECC
Confidence            3456789988   7886   799999999996 999  66666633   3479999999998876665422222346888


Q ss_pred             ceeEEE
Q 048589          270 KDVRVR  275 (283)
Q Consensus       270 k~iWaR  275 (283)
                      |.+-++
T Consensus        85 r~l~V~   90 (99)
T d1x4fa1          85 RCVKVD   90 (99)
T ss_dssp             SCCEEE
T ss_pred             EEEEEE
Confidence            888665

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.3e-05  Score=55.77  Aligned_cols=71  Identities=20%  Similarity=0.197  Sum_probs=55.4

Q ss_pred             eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEEcCceeE
Q 048589          199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNIHGKDVR  273 (283)
Q Consensus       199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~Ingk~iW  273 (283)
                      ++||   +|.|  +|++|++++|.+ ||. .+....+.    ...||+|.|.+.+....++.   |.    +.|+||.+=
T Consensus         3 ~l~V---~nLp~~~te~~L~~~F~~-~G~-i~~~~~~~----~rg~aFV~f~~~~~A~~Ai~~lng~----~~~~G~~i~   69 (80)
T d2cqha1           3 KLYI---GNLSPAVTADDLRQLFGD-RKL-PLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGK----VELHGKIME   69 (80)
T ss_dssp             CEEE---ECCCTTCCHHHHHHHHHH-TTC-CCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTT----CEETTEECE
T ss_pred             EEEE---ECCCCCCCHHHHHHHHHH-hCc-EEEeEEec----ccceEEEEECCHHHHHHHHHHhCCC----eEECCEEEE
Confidence            4666   8888  999999999986 997 43333332    35799999999999777664   54    368999999


Q ss_pred             EEecccCCC
Q 048589          274 VRRFVPKRA  282 (283)
Q Consensus       274 aRky~pk~~  282 (283)
                      ++...||+.
T Consensus        70 V~~a~~k~~   78 (80)
T d2cqha1          70 VDYSVSKKL   78 (80)
T ss_dssp             EEECCCCCC
T ss_pred             EEEcCCcCc
Confidence            999999875

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=4.1e-05  Score=56.11  Aligned_cols=73  Identities=21%  Similarity=0.372  Sum_probs=55.7

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEE
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVR  275 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaR  275 (283)
                      .++||   +|.|  ++++||+++|.+ ||+  |++|.|.+   .+.||.|.|.+.+..+.++..-+.  ..|+|+.+-++
T Consensus         9 ~~l~V---~nLp~~~~~~~l~~~F~~-~G~--i~~i~~~~---~k~~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~V~   77 (86)
T d2cpja1           9 SRLFV---GNLPPDITEEEMRKLFEK-YGK--AGEVFIHK---DKGFGFIRLETRTLAEIAKVELDN--MPLRGKQLRVR   77 (86)
T ss_dssp             TEEEE---ESCCTTCCHHHHHHHTST-TCC--CSEEEEET---TTTEEEEECSSSHHHHHHHHHHTT--CCBTTBCCEEE
T ss_pred             CEEEE---ECCCCCCCHHHHHHHHHH-hCC--ceEeeeec---ccceEEEEECCHHHHHHHHHHhCC--CEECCEEEEEE
Confidence            35776   8888  999999999997 999  88888854   467999999999887766542111  14789999887


Q ss_pred             ecccCC
Q 048589          276 RFVPKR  281 (283)
Q Consensus       276 ky~pk~  281 (283)
                      .-.++.
T Consensus        78 ~A~~~~   83 (86)
T d2cpja1          78 FACHSA   83 (86)
T ss_dssp             ESSCCS
T ss_pred             ECCCcC
Confidence            655543

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.8e-06  Score=62.51  Aligned_cols=68  Identities=19%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeE-------EEeecCCCCCceEEEEecChHHHHHHhC--CCCeeeEE
Q 048589          198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVED-------IKMGNCRDQSLYARVIVRSPAFITLILG--ENELMQFN  266 (283)
Q Consensus       198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~-------v~m~~~~~qplfariVf~s~~~vd~vL~--g~~~~kf~  266 (283)
                      |++||   ++.|  +||+||++||.+ ||. ...-       +...+.++...||.|.|.+++..+.++.  |.     .
T Consensus         2 RrlyV---gNLp~~~te~~l~~~F~~-~g~-~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~-----~   71 (90)
T d1u2fa_           2 RRLYV---GNIPFGITEEAMMDFFNA-QMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGI-----I   71 (90)
T ss_dssp             CEEEE---CSCCTTCCTTHHHHHHHH-HHT-TTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSC-----C
T ss_pred             CEEEE---cCCCCccchHHHHHHHHh-hCc-EEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCc-----E
Confidence            77888   8988  999999999997 884 2111       1111246778999999999888776664  43     4


Q ss_pred             EcCceeEEE
Q 048589          267 IHGKDVRVR  275 (283)
Q Consensus       267 Ingk~iWaR  275 (283)
                      ++|+.+-++
T Consensus        72 ~~Gr~l~V~   80 (90)
T d1u2fa_          72 FQGQSLKIR   80 (90)
T ss_dssp             SSSSCCCCB
T ss_pred             ECCEEEEEC
Confidence            588888554

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4.6e-05  Score=57.76  Aligned_cols=69  Identities=13%  Similarity=0.095  Sum_probs=45.7

Q ss_pred             EccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEE
Q 048589          203 TFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVR  275 (283)
Q Consensus       203 TFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaR  275 (283)
                      -|.++.|  +|+++|++.|.+ ||+  |+++.|-. .....||+|.|.+++.....+..-+..++..+|+++-+.
T Consensus        10 v~V~NL~~~vte~~L~~~F~~-~G~--i~~~~i~~-~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~   80 (108)
T d2adba1          10 IIVENLFYPVTLDVLHQIFSK-FGT--VLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID   80 (108)
T ss_dssp             EESCSCCSTTHHHHHHHHHTT-TSC--EEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEE
T ss_pred             EEEeCcCCCCCHHHHHHHHcc-CCc--EEEEEEEe-eCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEE
Confidence            3447766  999999999997 999  55555433 234689999999998877665422222223345555443

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=5.1e-05  Score=55.92  Aligned_cols=71  Identities=15%  Similarity=0.283  Sum_probs=51.2

Q ss_pred             CCceEEEEccCCcc--CCHHHH---HHHHHhhhCCceeeEEEeec------CCCCCceEEEEecChHHHHHHhCCCCeee
Q 048589          196 TDRTLFATFSKGHP--ITRAEL---FEFFTRRYGEGCVEDIKMGN------CRDQSLYARVIVRSPAFITLILGENELMQ  264 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei---~~fFt~~~G~~cve~v~m~~------~~~qplfariVf~s~~~vd~vL~g~~~~k  264 (283)
                      +.+++||   +|.|  ++++|+   +++|.+ ||.  |++|.|..      .+....||+|.|.+++.....+..-+-  
T Consensus         7 q~n~vyV---~nLp~~~t~~~l~~~~e~F~~-~G~--I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng--   78 (89)
T d2cpia1           7 QKNLVFV---VGLSQRLADPEVLKRPEYFGK-FGK--IHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN--   78 (89)
T ss_dssp             CSSCEEE---EEECTTTCCHHHHHSTTTTTT-TSC--EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT--
T ss_pred             ecCEEEE---ECCCCccCHHHHHHHHHHhcc-cCC--ceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCC--
Confidence            3467777   8999  899999   788996 999  77777754      233458999999998886665432111  


Q ss_pred             EEEcCceeEE
Q 048589          265 FNIHGKDVRV  274 (283)
Q Consensus       265 f~Ingk~iWa  274 (283)
                      ..++||.+=|
T Consensus        79 ~~~~gr~lkv   88 (89)
T d2cpia1          79 VVVDGRTLKA   88 (89)
T ss_dssp             EEETTEEEEE
T ss_pred             CEECCEEEEE
Confidence            2578888754

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00022  Score=53.84  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=44.5

Q ss_pred             CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC
Q 048589          194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~  258 (283)
                      ++..+++|| +-+|.|  +||+|+++.|.+ ||+  |+.|.|-.   ...||+|-|.+.+.....+.
T Consensus        15 ~~pt~~l~V-~ng~L~~~vte~~L~~~F~~-~G~--i~~i~~~~---~k~~aFV~f~~~e~A~~A~~   74 (101)
T d2cq2a1          15 SYATQSLVV-ANGGLGNGVSRNQLLPVLEK-CGL--VDALLMPP---NKPYSFARYRTTEESKRAYV   74 (101)
T ss_dssp             SSCCSEEEE-ETCTGGGTCCHHHHHHHHHH-HSC--EEEEECCT---TCSCEEEEESSHHHHHHHHH
T ss_pred             CCCCceEEE-ECCCCCCCCCHHHHHHHHHh-hCc--ccEEeecc---CccEEEEEECCHHHHHHHHH
Confidence            444578876 556766  999999999997 999  77787743   35699999999887555543

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00012  Score=51.14  Aligned_cols=52  Identities=19%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhC
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILG  258 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~  258 (283)
                      |.+|.|  +|++||+++|.+ ||+  |.++.+. +  +++..+||.|.|.+.+..+..+.
T Consensus         2 yV~nLp~~~te~~l~~~F~~-~G~--v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~   58 (72)
T d1x4ea1           2 YIRGLQPGTTDQDLVKLCQP-YGK--IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT   58 (72)
T ss_dssp             EEESCCTTCCHHHHHTTSTT-TSC--EEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred             EEeCCCCcCCHHHHHHHHhh-hcc--ccccccccccccccccceeEEEECCHHHHHHHHH
Confidence            347888  999999999986 999  4444443 3  67888999999999988766654

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.00031  Score=52.54  Aligned_cols=70  Identities=11%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589          195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV  272 (283)
Q Consensus       195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i  272 (283)
                      ...+++||   ++.|  ++++||+++|.+ ||+  |+.+.+..    ..||.|.|.+++.....+..-+.  ..++|+.+
T Consensus        13 ~~~~~i~V---~Nlp~~~~~~~L~~~F~~-~G~--v~~~~i~~----~g~afV~f~~~~~a~~Ai~~lng--~~~~g~~i   80 (98)
T d1wg4a_          13 RSDFRVLV---SGLPPSGSWQDLKDHMRE-AGD--VCYADVQK----DGMGMVEYLRKEDMEYALRKLDD--TKFRSHEG   80 (98)
T ss_dssp             SCSCEEEE---ECCCSSCCHHHHHHHHTT-SSC--EEEEEEET----TTEEEEEESSHHHHHHHHHHHSS--EEEECTTS
T ss_pred             CCCCEEEE---ECCCCCCCHHHHHHHHHh-hcc--cccccccc----cceEEEEECCHHHHHHHHHHhCC--CEeCCeEE
Confidence            34566777   8888  999999999965 998  88888864    36999999999998877653221  25678766


Q ss_pred             EEEe
Q 048589          273 RVRR  276 (283)
Q Consensus       273 WaRk  276 (283)
                      -++.
T Consensus        81 ~v~~   84 (98)
T d1wg4a_          81 ETSY   84 (98)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            4443

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00015  Score=53.13  Aligned_cols=70  Identities=14%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589          196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR  273 (283)
Q Consensus       196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW  273 (283)
                      ..+++||   ++.|  ++++||+++|.+ ||. -  .+.+   +....||+|.|.+++.....+..-+.  +.++||.+=
T Consensus         4 ~s~~i~V---~nLp~~~t~~~l~~lF~~-~G~-~--~~~~---~~~kg~afV~f~~~~~A~~Ai~~ln~--~~~~G~~l~   71 (88)
T d1wg1a_           4 GSSGILV---KNLPQDSNCQEVHDLLKD-YDL-K--YCYV---DRNKRTAFVTLLNGEQAQNAIQMFHQ--YSFRGKDLI   71 (88)
T ss_dssp             CCCCEEE---ESCCSSCCHHHHHHHTCS-SCC-C--CEEE---EGGGTEEEECCSCHHHHHHHHHHHTT--EEETTEEEE
T ss_pred             CCCEEEE---eCCCCccChHHHHHHHHh-cCc-e--eeee---eccCCceEEEECCHHHHHHHHHHhCC--CEECCEEEE
Confidence            3578888   8999  999999999985 993 1  2333   33467999999999997777653221  368999998


Q ss_pred             EEec
Q 048589          274 VRRF  277 (283)
Q Consensus       274 aRky  277 (283)
                      ++--
T Consensus        72 V~~a   75 (88)
T d1wg1a_          72 VQLQ   75 (88)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8654

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.6e-05  Score=54.22  Aligned_cols=59  Identities=12%  Similarity=0.078  Sum_probs=45.9

Q ss_pred             cCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcCceeEEE
Q 048589          205 SKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNIHGKDVRVR  275 (283)
Q Consensus       205 S~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ingk~iWaR  275 (283)
                      .+|.|  +|++||+++|.+ ||+  |.++.+..    ..||.|.|.+.+....++   +|..     ++|+.+.+.
T Consensus         5 V~nlp~~~~~~~l~~~F~~-~G~--v~~~~i~~----~g~afV~f~~~~~a~~Ai~~l~g~~-----~~g~~i~v~   68 (87)
T d3begb1           5 VSGLPPSGSWQDLKDHMRE-AGD--VCYADVYR----DGTGVVEFVRKEDMTYAVRKLDNTK-----FRSHEGETA   68 (87)
T ss_dssp             EEECCSSCCTTHHHHHHGG-GSC--EEEEEECT----TSEEEEEESSHHHHHHHHHHHTTCB-----CCCTTSCCC
T ss_pred             EECCCCcCCHHHHHHHHhh-hcc--cccccccc----cceeeEEeCCHHHHHHHHHHhCCCE-----ECCcEeEEe
Confidence            38888  999999999985 998  77777643    279999999999977766   4543     678876543

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00036  Score=49.67  Aligned_cols=65  Identities=14%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             ccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEec
Q 048589          204 FSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRRF  277 (283)
Q Consensus       204 FS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRky  277 (283)
                      |.+|.|  ++++||+++|.+ ||   +..+..   ++...||.|.|.+.+....++..-+  ...++|+.+=++--
T Consensus         2 ~V~nLp~~~t~~~l~~~F~~-~g---~~~~~~---~~~~g~afv~f~~~~~A~~Ai~~ln--~~~~~g~~l~V~~a   68 (75)
T d1wi6a1           2 LIRGLPGDVTNQEVHDLLSD-YE---LKYCFV---DKYKGTAFVTLLNGEQAEAAINTFH--QSRLRERELSVQLQ   68 (75)
T ss_dssp             EEECCCTTCCHHHHHHHTTT-SC---EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHT--TEESSSCEEEEEEC
T ss_pred             EEeCCCCcCCHHHHHHHHhc-cc---ccceee---cccceeEEEEECCHHHHHHHHHHhC--CccCCCCEEEEEEe
Confidence            447888  999999999986 98   233333   5567899999999999777765322  24689998877654

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0011  Score=49.68  Aligned_cols=62  Identities=15%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcCceeEEEecccCCC
Q 048589          212 RAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNIHGKDVRVRRFVPKRA  282 (283)
Q Consensus       212 e~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ingk~iWaRky~pk~~  282 (283)
                      ++||++.|.+ ||.  |+.|.+.. +.+.+||.|.|.+++.....+   +|.     .++||.|.+.-|.||..
T Consensus        33 ~edv~~~~~~-~G~--V~~v~~~~-~~~~G~~fV~f~~~e~A~~A~~~lng~-----~~~gr~i~v~~~~g~~~   97 (99)
T d2dita1          33 REDLRVECSK-FGQ--IRKLLLFD-RHPDGVASVSFRDPEEADYCIQTLDGR-----WFGGRQITAQAWDGTTD   97 (99)
T ss_dssp             HHHHHHHGGG-TSC--CSEEEEET-TCTTCEEEEECSCHHHHHHHHHHSTTC-----EETTEECEEEECCSCCC
T ss_pred             HHHHHHHhcC-ccc--EEEEeccC-CCCccEEEEEECCHHHHHHHHHHhCCc-----EECCEEEEEEEeCCcCC
Confidence            3678899984 998  77777755 566789999999999976665   453     58999999999999864

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00049  Score=52.58  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=39.1

Q ss_pred             CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecCh
Q 048589          192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSP  250 (283)
Q Consensus       192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~  250 (283)
                      ..|..+.+.   |.+|.|  +|+++|+++|.+ ||+  |+.|.+.+   ...||+|.|.+.
T Consensus         6 ~~~~g~~~~---fvgnL~~~~tee~Lk~~F~~-fG~--V~~v~i~~---~kg~gfV~F~~~   57 (113)
T d1owxa_           6 EEKIGCLLK---FSGDLDDQTCREDLHILFSN-HGE--IKWIDFVR---GAKEGIILFKEK   57 (113)
T ss_dssp             SCCCCCEEE---EEESCCSSCCHHHHHHHTCS-SCC--EEEEECCT---TCSEEEEEESSC
T ss_pred             CCCCCCeEE---EECCCCCCCCHHHHHHHHHh-cCC--hheEEEec---CCceEEEEecCc
Confidence            345554455   558787  899999999997 999  88888844   468999999884

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00096  Score=50.50  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhC---CCCeeeEEEcCceeEEE
Q 048589          210 ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILG---ENELMQFNIHGKDVRVR  275 (283)
Q Consensus       210 vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~---g~~~~kf~Ingk~iWaR  275 (283)
                      ++|++++++|.+ ||.  |++|.|-+  +++..+||.|.|.+++.....+.   |.     .++||.+-+.
T Consensus        39 ~~ed~l~e~f~k-~G~--I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~-----~~~gr~i~v~  101 (104)
T d1jmta_          39 FFEEVFTEMEEK-YGE--VEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR-----WFNGQPIHAE  101 (104)
T ss_dssp             HHHHHHHHHHHH-TCC--EEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC-----EETTEECCEE
T ss_pred             hhHHHHHHHhcc-CCC--EEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCC-----EECCEEEEEE
Confidence            788899999996 999  77777765  78889999999999998766654   53     5799887553

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.003  Score=45.85  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=52.9

Q ss_pred             CCceEEEEccCCccCC-HHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC--CCCeeeEEEcCc-e
Q 048589          196 TDRTLFATFSKGHPIT-RAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG--ENELMQFNIHGK-D  271 (283)
Q Consensus       196 d~RT~FvTFS~G~Pvs-e~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~--g~~~~kf~Ingk-~  271 (283)
                      |+..+||   .|+|-+ .+|+.++|.+ ||+  |.++.+   ++...||.|-|.+++...+.|.  |.     .|+|+ .
T Consensus         3 ~~~wV~V---~G~p~~~~~~il~~F~~-~G~--I~~~~~---~~~~~~~fV~f~~~~~A~~Al~~nG~-----~~~g~~~   68 (81)
T d1wwha1           3 DDTWVTV---FGFPQASASYILLQFAQ-YGN--ILKHVM---SNTGNWMHIRYQSKLQARKALSKDGR-----IFGESIM   68 (81)
T ss_dssp             GGGEEEE---ECCCGGGHHHHHHHHHT-TSC--EEEEEE---CSSSSEEEEEESSHHHHHHHHTTTTC-----EETTTEE
T ss_pred             cccEEEE---ECCChHHHHHHHHHHHh-hhh--hheEEe---cCCCCEEEEEEcccHHHHHHHhcCCC-----eECCcEE
Confidence            5667777   599922 3567778995 999  666666   4567899999999999988886  42     67887 5


Q ss_pred             eEEEecccC
Q 048589          272 VRVRRFVPK  280 (283)
Q Consensus       272 iWaRky~pk  280 (283)
                      +=++....|
T Consensus        69 vgV~~~~~k   77 (81)
T d1wwha1          69 IGVKPCIDK   77 (81)
T ss_dssp             CEEEECCCH
T ss_pred             EEEEeCCCh
Confidence            667776654

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.013  Score=43.92  Aligned_cols=75  Identities=15%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             CCceEEEEccCCcc-------CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589          196 TDRTLFATFSKGHP-------ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH  268 (283)
Q Consensus       196 d~RT~FvTFS~G~P-------vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In  268 (283)
                      ...+|||+   ..+       .++++++++|+. ||+  |.++.+-+   ...||+|.|.+.+.....+...+-  ..|+
T Consensus         4 ~~~~L~v~---nl~~~v~~~d~~k~~l~~lF~~-~G~--i~~~~~~k---~~~~afV~f~~~~~A~~Ai~~lng--~~~~   72 (104)
T d1weya_           4 GSSGLIAC---VANDDVFSESETRAKFESLFRT-YDK--DTTFQYFK---SFKRVRINFSNPLSAADARLRLHK--TEFL   72 (104)
T ss_dssp             CCCEEEEE---CCCGGGGSTTTHHHHHHHHHHT-TCS--SCEEEEET---TTTEEEEECSSTTHHHHHHHTSTT--SEET
T ss_pred             CCceEEEE---eCCchhcCcHHHHHHHHHHhcc-ccc--ceEEEEec---CCCEEEEEECCHHHHHHHHHHhcc--cccC
Confidence            34567774   333       345779999997 999  45555533   456999999999997777664332  2679


Q ss_pred             CceeEEEecccCC
Q 048589          269 GKDVRVRRFVPKR  281 (283)
Q Consensus       269 gk~iWaRky~pk~  281 (283)
                      ||.+-+.-..|++
T Consensus        73 g~~l~v~~a~~~~   85 (104)
T d1weya_          73 GKEMKLYFAQTLH   85 (104)
T ss_dssp             TEECEEECCCCSS
T ss_pred             CCEeEEeecccCC
Confidence            9999776555443

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.049  Score=40.34  Aligned_cols=60  Identities=15%  Similarity=0.044  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhhCCceeeEEEeec-----CCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcCceeEEEeccc
Q 048589          212 RAELFEFFTRRYGEGCVEDIKMGN-----CRDQSLYARVIVRSPAFITLI---LGENELMQFNIHGKDVRVRRFVP  279 (283)
Q Consensus       212 e~Ei~~fFt~~~G~~cve~v~m~~-----~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ingk~iWaRky~p  279 (283)
                      .+||++-|.+ ||.  |++|.+.+     .+....|+.|-|.+++.....   |+|.     .++||.|.|.-|-+
T Consensus        28 ~edi~~e~~k-~G~--v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr-----~f~gR~v~v~f~~~   95 (104)
T d1o0pa_          28 VEDVRDECSK-YGL--VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR-----KFANRVVVTKYCDP   95 (104)
T ss_dssp             HHHHHHHHTT-TSC--EEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSC-----CSSSSCCEEEEECH
T ss_pred             HHHHHHHhcc-cCc--eEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCC-----EECCeEEEEEEcCH
Confidence            5678999975 999  78888765     234457999999999885544   5674     58999999987654