Citrus Sinensis ID: 048591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
FENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNTA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHccccccHHHHHHHHHccccccccccccHHHHHHHHccccccccccHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEcccccEEcEEEccHHHHHHHHHHHcccccEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccccHHHHHcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHccHHccccccHHHEEEEEcccccccEcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEcccccccEEEEEHHHHHHHHHHHHHHHccEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEcccccccccccHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHEcccccccccccHHHHHHHHHccEEEccccccHcccHHHHHHHHccc
Coil and Loop (DISEMBL)
fengenvrldivptggplrvtyqgwPFLILYHGSISLEQNIEEaiegpmgrltviscklpfHLKLCFLYLSVFPAHLEISTRQLYHLWIAegfipdnseATAEKYLEQLINRGFvkankrrtggtihtcsipcrcrpVLLAVASEVEFIFLSFMVSerkskknvKRINVFYkqsdfvhfvdddshmhsllyftsksdhldpidwGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKlnipslkilpssLLSNLlnlytldmpfsyidhtadeftlharnta
Flexible Loop (DISEMBL)
fengenvrldivptggplRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGfvkankrrtggtihtcsipcrCRPVLLAVASEVEFIFLSFmvserkskknvkRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNTA
Low Complexity Region (SEG)
FENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKlnipslkilpssllsnllnlYTLDMPFSYIDHTADEFTLHARNTA
Disordered region (IsUnstruct)
*******RLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTL******
Disordered Region (DISOPRED)
FENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISL*Q**EEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFM********NVKRINVFYKQ**********SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNTA
Disordered Region (DISEMBL)
FENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNTA
Disordered Region (DISPRO)
****ENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9M667	835	Disease resistance protei	yes	no	0.716	0.245	0.342	4e-17
Q9STE7	847	Putative disease resistan	no	no	0.905	0.305	0.293	5e-17
Q9STE5	847	Putative disease resistan	no	no	0.723	0.244	0.311	5e-15
Q6L403	1312	Putative late blight resi	N/A	no	0.688	0.150	0.354	5e-13
Q6L3Z7	1317	Putative late blight resi	N/A	no	0.688	0.149	0.354	6e-13
P0C8S1	906	Probable disease resistan	no	no	0.667	0.210	0.312	2e-12
Q8W3K3	910	Putative disease resistan	no	no	0.713	0.224	0.304	4e-12
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.692	0.219	0.313	9e-12
Q9C646	899	Probable disease resistan	no	no	0.769	0.244	0.288	2e-11
Q6L3X3	1202	Putative late blight resi	N/A	no	0.681	0.162	0.348	3e-11

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 14/219 (6%)

Query: 64  KLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEK----YLEQLINRGFVKANK 119
           KLCFLYLS+FP   EI   +L HL +AEGFI  + E   E     Y+E+LI+R  ++A  
Sbjct: 418 KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEA-V 476

Query: 120 RRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHF 179
           RR  G + +C I    R V +  + E+ F+ +      + S    +R  V ++   +   
Sbjct: 477 RRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSE 536

Query: 180 VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239
              +  M S LYF  + DHL  +D+      L+ LRVLD GSL L    +G  +L  LRY
Sbjct: 537 KRKNKRMRSFLYF-GEFDHLVGLDFET----LKLLRVLDFGSLWLPFKING--DLIHLRY 589

Query: 240 LKLNIPSLKILP-SSLLSNLLNLYTLDMPFSY-IDHTAD 276
           L ++  S+     ++++S L  L TL +  +Y I+ T D
Sbjct: 590 LGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETID 628

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 138/303 (45%), Gaps = 44/303 (14%)

Query: 1   FENGENVRLDIVPTGGPLRVTYQGWPF-LILYHGSISLEQNIE--EAIEGPMGRLTVISC 57
           F N E V  D+  TG  +     G P  +++  G +S ++  E  E       RL   S 
Sbjct: 341 FSNIEKVDEDLQRTGKEMVKKCGGLPLAIVVLSGLLSRKRTNEWHEVCASLWRRLKDNSI 400

Query: 58  -----------KLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEK-- 104
                      ++   LKLCFLY SVFP   EI   +L HL +AEGFI ++ E   E   
Sbjct: 401 HISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVA 460

Query: 105 --YLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKK 162
             Y+++L++R  VKA +R   G + +C I    R + +  A E+ F+ +    +E++   
Sbjct: 461 RCYIDELVDRSLVKA-ERIERGKVMSCRIHDLLRDLAIKKAKELNFVNV---YNEKQHSS 516

Query: 163 NVKRINVFYKQSDFVHFVDD--DSHMHSLLYFTSKSDHLDPIDWGII---CLMLEFLRVL 217
           ++ R  V +   +  +  D   +  M S L+   +        +G +    L L+ LRVL
Sbjct: 517 DICRREVVHHLMNDYYLCDRRVNKRMRSFLFIGERR------GFGYVNTTNLKLKLLRVL 570

Query: 218 DLGSLVLIQY------PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDM----P 267
           ++  L+ +        P  I  L  LRYL +    + ILP+S +SNL  L TLD     P
Sbjct: 571 NMEGLLFVSKNISNTLPDVIGELIHLRYLGIADTYVSILPAS-ISNLRFLQTLDASGNDP 629

Query: 268 FSY 270
           F Y
Sbjct: 630 FQY 632

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 21/228 (9%)

Query: 62  HLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEK----YLEQLINRGFVKA 117
            LKLCFLYLSVFP   E+   +L  L +AEGFI ++ E T E     Y+E L+    V+ 
Sbjct: 409 ELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEV 468

Query: 118 NKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFV 177
            KR+  G + +  I    R   +  + E+ F+     V + +      R  V +   D  
Sbjct: 469 VKRKK-GKLMSFRIHDLVREFTIKKSKELNFV----NVYDEQHSSTTSRREVVHHLMDDN 523

Query: 178 HFVDD--DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-------QYP 228
           +  D   ++ M S L+F  + + +  ++   I L L+ LRVL+LG L  I         P
Sbjct: 524 YLCDRRVNTQMRSFLFFGKRRNDITYVE--TITLKLKLLRVLNLGGLHFICQGYSPWSLP 581

Query: 229 SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD 276
             I  L  LRYL +    +  LP   +SNL  L TLD   +  +   D
Sbjct: 582 DVIGGLVHLRYLGIADTVVNNLP-DFISNLRFLQTLDASGNSFERMTD 628

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L403|R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 102/220 (46%), Gaps = 23/220 (10%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP HLK CFLY   F     I   +L  LWI+E FI  +     E  AE YLE LI R  
Sbjct: 783 LPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLENLIGRNL 842

Query: 115 VKANKRR-TGGTIHTCSIPCRCRPVLLAVASE--VEFIFLSFMVSERKSKKNVKRIN--- 168
           V   +R  + G +      CR   VLL    E   E  FL ++  ++ S K V       
Sbjct: 843 VMVTQRADSDGKVKA----CRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHKQHA 898

Query: 169 --VFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDP-IDWGIICLMLEFLRVLDLGSLVLI 225
              F +  + V +    S + S+L+    S    P     +I L  +FL+VLDL   V+I
Sbjct: 899 HLAFTEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSISLILLNFKFLKVLDLERQVVI 958

Query: 226 QY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264
            + P+    LF LRYL  +I    I PSS +SNL NL TL
Sbjct: 959 DFIPT---ELFYLRYLSASIEQNSI-PSS-ISNLWNLETL 993

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 102/220 (46%), Gaps = 23/220 (10%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP HLK CFLY   F     I   +L  LWI+E FI  +     E  AE YLE LI R  
Sbjct: 783 LPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLENLIGRNL 842

Query: 115 VKANKRR-TGGTIHTCSIPCRCRPVLLAVASE--VEFIFLSFMVSERKSKKNVKRIN--- 168
           V   +R  + G +      CR   VLL    E   E  FL ++  ++ S K V       
Sbjct: 843 VMVTQRADSDGKVKA----CRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHKQHA 898

Query: 169 --VFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDP-IDWGIICLMLEFLRVLDLGSLVLI 225
              F +  + V +    S + S+L+    S    P     +I L  +FL+VLDL   V+I
Sbjct: 899 HLAFTEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSTSLILLNFKFLKVLDLEHQVVI 958

Query: 226 QY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264
            + P+    LF LRYL  +I    I PSS +SNL NL TL
Sbjct: 959 DFIPT---ELFYLRYLSASIEQNSI-PSS-ISNLWNLETL 993

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIP---DNS--EATAEKYLEQLINRG 113
           LP  LK CF YL+ FP   +I  + L++ W+AEG I    D S  + T E YLE+L+ R 
Sbjct: 414 LPMQLKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGESYLEELVRRN 473

Query: 114 FVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNV----KRINV 169
            V   +      I  C +    R V L+ A E  FI +  + +   +  N     +   +
Sbjct: 474 MVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTTSTTINAQSPCRSRRL 533

Query: 170 FYKQSDFVHFV--DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-- 225
                + +H +   D+    S+L F  +     P   G  CL L  LRVLDL  +     
Sbjct: 534 VLHSGNALHMLGHKDNKKARSVLIFGVEEKFWKPR--GFQCLPL--LRVLDLSYVQFEGG 589

Query: 226 QYPSGIENLFLLRYLKLNIPSLKILPSS 253
           + PS I +L  LR+L L    +  LPSS
Sbjct: 590 KLPSSIGDLIHLRFLSLYEAGVSHLPSS 617

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 95/223 (42%), Gaps = 19/223 (8%)

Query: 58  KLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIP------DNSEATAEKYLEQLIN 111
           +LP +LK CFLYL+ FP    I   +L + W AEG +              E Y+E+L+ 
Sbjct: 419 ELPSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESYIEELVR 478

Query: 112 RGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFY 171
           R  V A +  T      C +    R V L  A E  F+ ++ ++    + +       F 
Sbjct: 479 RNMVIAERDVTTLRFEACHLHDMMREVCLLKAKEENFVQIASILPPTANSQYPGTSRRFV 538

Query: 172 KQSDFVHFVDDD---SHMHSLLYFTSKSDHLDPIDWGIIC---LMLEFLRVLDL--GSLV 223
            Q+     V  D     + SLL             W ++    + LE LRVLDL      
Sbjct: 539 SQNPTTLHVSRDINNPKLQSLLIVWENRRK----SWKLLGSSFIRLELLRVLDLYKAKFE 594

Query: 224 LIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDM 266
               PSGI  L  LRYL L++  +  LPSS L NL  L  LD+
Sbjct: 595 GRNLPSGIGKLIHLRYLNLDLARVSRLPSS-LGNLRLLIYLDI 636

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 16/214 (7%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS-EATAEKYLEQLINRGFVKA 117
           LP  LK CFLYL+ FP   +I TR LY  W AEG     +   + E YLE+L+ R  V A
Sbjct: 413 LPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDSGEDYLEELVRRNLVIA 472

Query: 118 NKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFL-------SFMVSERKSKKNVKRINVF 170
            K      +  C +    R V ++ A    F+ +       S ++++  S+   +R+ V 
Sbjct: 473 EKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQSPSRS--RRLTVH 530

Query: 171 YKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI--QYP 228
             ++   H +     + SLL    K D    I        L  LRVLDL S+     + P
Sbjct: 531 SGKA--FHILGHKKKVRSLLVLGLKEDLW--IQSASRFQSLPLLRVLDLSSVKFEGGKLP 586

Query: 229 SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY 262
           S I  L  LR+L L+   +  LPS++ +  L LY
Sbjct: 587 SSIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLY 620

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C646|RX24L_ARATH Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 12/232 (5%)

Query: 52  LTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEG------FIPDNSEATAEKY 105
           L+V   +LP +LK CFLYL+ FP   EI   +L++ W AEG      +  +    T + Y
Sbjct: 408 LSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSY 467

Query: 106 LEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVK 165
           +E+L+ R  V + +        TC +    R + L  A E  F+ +    S   + + + 
Sbjct: 468 IEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLG 527

Query: 166 RINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDW---GIICLMLEFLRVLDL--G 220
               F   +     V+   +   L       D +    W   G I   ++ LRVLDL   
Sbjct: 528 ASRRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQA 587

Query: 221 SLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID 272
                + PS I  L  LRYL L    +  LPSS L NL+ L  LD+   + D
Sbjct: 588 KFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSS-LRNLVLLIYLDIRTDFTD 638

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L3X3|R1B8_SOLDE Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP HLK CFLY   F     I   +L  LWI+E FI        E  AE YLE LI R  
Sbjct: 702 LPCHLKSCFLYFGAFLEDRVIDISRLIGLWISESFIKSCEGRRLEYIAEGYLENLIGRNL 761

Query: 115 VKANKRR-TGGTIHTCSIPCRCRPVLLAVASE--VEFIFLSFMVSERKSKKNVKRIN--- 168
           V   +R  + G +      CR   VLL    +   E  FL ++  ++ +K          
Sbjct: 762 VMVTQRAISDGKVKA----CRLHDVLLDFCKKRAAEENFLLWINRDQSTKAVYSHKQHAH 817

Query: 169 -VFYKQSDFVHFVDDDSHMHSLL------YFTSKSDHLDPIDWGIICLMLEFLRVLDLGS 221
             F +  + V +    S + S+L      YF   S H   I    I L  +FL+VLDL  
Sbjct: 818 LAFTEMDNLVEWSASCSLVGSVLFKSYDPYFRPLSSHAFAI--SHILLNFKFLKVLDLEH 875

Query: 222 LVLIQY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264
            V+I + P+    LF LRYL  +I    I PSS +SNL NL TL
Sbjct: 876 QVIIDFIPT---ELFYLRYLSAHIDQNSI-PSS-ISNLWNLETL 914

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
359496848	856	PREDICTED: disease resistance RPP8-like	0.741	0.247	0.334	1e-23
147766035	902	hypothetical protein VITISV_038742 [Viti	0.741	0.235	0.334	2e-23
225465433	908	PREDICTED: disease resistance protein RP	0.720	0.226	0.347	6e-23
297744337	591	unnamed protein product [Vitis vinifera]	0.895	0.433	0.312	1e-22
225465431	919	PREDICTED: disease resistance protein RP	0.720	0.224	0.324	2e-21
147808016	898	hypothetical protein VITISV_018440 [Viti	0.905	0.288	0.297	3e-21
359480122	934	PREDICTED: disease resistance protein RP	0.723	0.221	0.327	3e-21
225455685	841	PREDICTED: probable disease resistance p	0.860	0.292	0.311	5e-21
359480124	924	PREDICTED: disease resistance protein RP	0.720	0.222	0.328	7e-21
224071419	946	nbs-lrr resistance protein [Populus tric	0.734	0.221	0.341	9e-21

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEAT----AEKYLEQLINRGF 114
           LP++LK CFLY  +FP  LEI   +L  LWIAEGF+    E +    AE +LE+L++R  
Sbjct: 377 LPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSM 436

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFI-FLSFMVSERKSKKNVKRINVFYKQ 173
           ++  ++R  G I  C I    R + ++ A E +F+  L     +       +RI+V    
Sbjct: 437 IQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSSL 496

Query: 174 SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIEN 233
            +++     + H  S+L+F+   + L    W  +   L+ LRVLDL  +     P  I  
Sbjct: 497 EEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPKEIRE 556

Query: 234 LFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271
           L  LRYL L    L+ LPSS + N  NL TLD+  + +
Sbjct: 557 LVHLRYLGLRRTGLQRLPSS-IQNFCNLQTLDIRATKV 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEAT----AEKYLEQLINRGF 114
           LP++LK CFLY  +FP  LEI   +L  LWIAEGF+    E +    AE +LE+L++R  
Sbjct: 423 LPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSM 482

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFI-FLSFMVSERKSKKNVKRINVFYKQ 173
           ++  ++R  G I  C I    R + ++ A E +F+  L     +       +RI+V    
Sbjct: 483 IQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSSL 542

Query: 174 SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIEN 233
            +++     + H  S+L+F+   + L    W  +   L+ LRVLDL  +     P  I  
Sbjct: 543 EEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALPKEIRE 602

Query: 234 LFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271
           L  LRYL L    L+ LPSS + N  NL TLD+  + +
Sbjct: 603 LVHLRYLGLRRTGLQRLPSS-VQNFCNLQTLDIRATKV 639

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465433|ref|XP_002265568.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 13/219 (5%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP+HLK CFLYL++FP    I    L  LWIAEGF+        E TAE +L +LI R  
Sbjct: 420 LPYHLKSCFLYLAIFPEDYTIKCGILTRLWIAEGFVKTKRGVTLEETAEGFLTELIRRSL 479

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKS-KKNVKRINVFYKQ 173
           V+ +     G I  C I    R ++L  A E+   F S M  E        +R++V    
Sbjct: 480 VQVSDVYIDGNIKRCHIHDLMREIILKKAEELS--FFSVMAGEASCFDGRFRRLSVQNSS 537

Query: 174 SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIEN 233
           ++ +      SH+ S+  + S+   L     G +    +FL+VLDLG   L + P  + N
Sbjct: 538 NNVLDIPSKKSHIRSIFLYNSEMFSL-----GTLASKFKFLKVLDLGGAPLERIPEDLGN 592

Query: 234 LFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID 272
           L  LRYL L    +++LP S +  L NL TLD+ +S ++
Sbjct: 593 LLHLRYLSLRKTRVRMLPRS-IGKLQNLQTLDLKYSLVE 630

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744337|emb|CBI37307.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 9   LDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFL 68
           L IV  GG L    +       +  S+  E      +E     L++    LP+ LK CFL
Sbjct: 222 LAIVAIGGLLSRKEKIVSEWRKFSDSLGFELESNSHLESINTILSLSYYDLPYQLKSCFL 281

Query: 69  YLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGFVKANKRRTGG 124
           YL++FP    I    L  LWIAEGF+        E TAE++L +LI+R  V+ ++    G
Sbjct: 282 YLAIFPKDYTIKCGILTRLWIAEGFVKAKRGVTLEDTAEEFLTELIHRSLVQVSQVYIDG 341

Query: 125 TIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKS-KKNVKRINVFYKQSDFVHFVDDD 183
            I  C I    R ++L  A E+ F   S M  E        +R+++    ++ +      
Sbjct: 342 NIKRCHIHDLMREIILKKAEELSFC--SVMAGEASCFDGRFRRLSIQNSSNNVLDITSKK 399

Query: 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLN 243
           SH+ S+  + S+   L+      +    + L+VLDLG   L + P  + NLF LRYL L 
Sbjct: 400 SHIRSIFLYNSEMFSLE-----TLASKFKLLKVLDLGGAPLDRIPEDLGNLFHLRYLSLR 454

Query: 244 IPSLKILPSSLLSNLLNLYTLDMPFSYID 272
              +K+LP S +  L NL TLD+ +S+++
Sbjct: 455 KTKVKMLPRS-IGKLQNLQTLDLKYSFVE 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465431|ref|XP_002265419.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 13/219 (5%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP+ LK CFLY ++FP    I  R L  LWIAEGF+        E  AE++L +LI R  
Sbjct: 423 LPYQLKSCFLYFAIFPEDCTIKCRPLTRLWIAEGFVKAKRGVTLEEVAEEFLTELIQRSL 482

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKS-KKNVKRINVFYKQ 173
           V  ++    G I +C +    R ++L  A E+ F  +  M  E  S     +R+++ Y  
Sbjct: 483 VLVSEVFADGKIRSCHVHDLMREIILTKAEELSFCCV--MTGEESSFDGRFRRLSLHYSS 540

Query: 174 SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIEN 233
           ++ V+     SH+ S+  + S++  L     GI+      L VL L    L   P  + N
Sbjct: 541 NNVVNITGKKSHIRSIFLYNSQTFFL-----GILASKFNLLEVLHLDDSGLDSIPENLGN 595

Query: 234 LFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID 272
           L  LRYL L    +++LP S +  L NL TLD+ ++ ++
Sbjct: 596 LLHLRYLSLRNTKVRMLPRS-IGKLQNLQTLDLKYTLVE 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147808016|emb|CAN62150.1| hypothetical protein VITISV_018440 [Vitis vinifera]

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 127/272 (46%), Gaps = 13/272 (4%)

Query: 6   NVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKL 65
            +RL IV  GG L    +       +  ++  E      +E     L++    LP+ LK 
Sbjct: 344 GLRLAIVAIGGLLSRKEKLVSEWKKFSDTLGSELQSNSHLESINTILSLSYHDLPYQLKS 403

Query: 66  CFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGFVKANKRR 121
           CFLY ++FP    I  R L  LWIAEGF+        E  AE++L +LI R  V  ++  
Sbjct: 404 CFLYFAIFPEDCTIKCRPLTRLWIAEGFVKAKRGVTLEEVAEEFLTELIQRSLVLVSEVF 463

Query: 122 TGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKS-KKNVKRINVFYKQSDFVHFV 180
             G I +C +    R ++L  A E+ F  +  M  E  S     +R+++ Y  ++ V+  
Sbjct: 464 ADGKIRSCHVHDLMREIILTKAEELSFCCV--MTGEESSFDGRFRRLSLHYSSNNVVNIT 521

Query: 181 DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240
              SH+ S+  + S++  L     GI+      L VL L    L   P  + NL  LRYL
Sbjct: 522 GKKSHIRSIFLYNSQTFFL-----GILASKFNLLEVLHLDDSGLDSIPENLGNLLHLRYL 576

Query: 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYID 272
            L    +++LP S +  L NL TLD+ ++ ++
Sbjct: 577 SLRNTEVRMLPRS-IGKLQNLQTLDLKYTLVE 607

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480122|ref|XP_002265617.2| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] gi|147771833|emb|CAN60254.1| hypothetical protein VITISV_025805 [Vitis vinifera]

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 13/220 (5%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP++LK CFLYL++FP    I   +L  LWIAEGF+        E  AE++L +LINR  
Sbjct: 422 LPYYLKSCFLYLAIFPEDYTIKCTKLTRLWIAEGFVKAKKGVTMEELAEEFLTELINRSL 481

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKS-KKNVKRINVFYKQ 173
           V+ +     G I +C I    R ++L +A E+ F     +  E  S     +RI+V    
Sbjct: 482 VQVSDVDLEGKIRSCHIHDLMREMILKMAEEMSFC--RVLAGEGSSFDGKSRRISVHNST 539

Query: 174 SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIEN 233
           ++ +  +D +SH+ S+  F S     + I    +    + ++VLD     L   P  + N
Sbjct: 540 NNILDTIDKNSHVRSIFLFNS-----EMIFTSTLASKCKLVKVLDFKDAPLESVPEDLGN 594

Query: 234 LFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDH 273
           LF L++L L    +K+LP S +  L NL TLD+  S ++ 
Sbjct: 595 LFHLKFLSLRKTKVKMLPKS-IGKLQNLQTLDLKHSLVEE 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455685|ref|XP_002265241.1| PREDICTED: probable disease resistance protein RXW24L [Vitis vinifera]

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 33/279 (11%)

Query: 15  GGPLRVTYQGWPFLILYHGSI----------------SLEQNIEEAIEGPMGRLTVISCK 58
           G  +     G P  I+  GS+                SLE ++ +  E   G L +    
Sbjct: 358 GKKMTAKCHGLPLAIVALGSLLSRKDKTTSSWRKVLESLEWHLNQGPESCFGILALSYND 417

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFI----PDNSEATAEKYLEQLINRGF 114
           LP++LK CFLY  +F    EI   +L+ +WIAEGF+     +  E  AE YLE+LINR  
Sbjct: 418 LPYYLKSCFLYCGLFLEDSEIKVSKLFQMWIAEGFVQRRGEEKVEKVAEDYLEELINRSM 477

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQS 174
           ++  KR++ G I +C I    R + ++ A + +F F  +  ++  S  +V+R+ + +K+ 
Sbjct: 478 IRVVKRKSNGGIKSCHIHGLLRDLAISEAKDSKF-FEVYENTDYTSPISVRRLTIPHKK- 535

Query: 175 DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLD--LGSLVLIQYPSGIE 232
           + VH + + S + SL+ F  + D L        CL  + L VLD  L + + I  P  I 
Sbjct: 536 EIVHHI-NSSRLRSLIGFVGE-DSLTS------CLAPKLLTVLDVELSTKLKITLPKEIG 587

Query: 233 NLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271
            L  L+Y++L       LP S +  L+NL TLD  F  I
Sbjct: 588 ELIRLKYMRLRGGHGLRLPES-IGRLVNLQTLDCRFGKI 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480124|ref|XP_003632405.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 13/219 (5%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP++LK CFLYL++FP    I    L  LWIAEGF+        E  AE++L +LI+R  
Sbjct: 423 LPYYLKSCFLYLAIFPEDYTIRCGPLTRLWIAEGFVKAKKDVMLEDVAEEFLTELIHRNL 482

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKS-KKNVKRINVFYKQ 173
           V+ +     G I +C I    R ++L  A+E+ F  L  M  E  S     + ++V    
Sbjct: 483 VQVSDVYADGKIESCHIHDLIREIILKKAAELSFCCL--MTGEASSFDGGFRHLSVHNSS 540

Query: 174 SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIEN 233
            + V+ +   SH+ S+  + S+   L+      +      L+VLDL    L  +P  + N
Sbjct: 541 YNVVNIIGKKSHIRSIFLYNSQMFFLEK-----LASRFNLLKVLDLNDSGLDSFPENLGN 595

Query: 234 LFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID 272
           L  LRYL L    +++LP S +  L NL TLD+ +S ++
Sbjct: 596 LLHLRYLSLRNTKVRMLPRS-IGKLQNLQTLDLKYSLVE 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071419|ref|XP_002303451.1| nbs-lrr resistance protein [Populus trichocarpa] gi|105923008|gb|ABF81450.1| NBS-LRR type disease resistance protein [Populus trichocarpa] gi|222840883|gb|EEE78430.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 7/217 (3%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS----EATAEKYLEQLINRGF 114
           LP++LK C LY S+FPA   I   +L  LWIAEGF+        E  AE YL +LI R  
Sbjct: 420 LPYYLKSCLLYFSIFPAGNPIERMKLIRLWIAEGFVEGKEVMTLEEVAEDYLNELIKRSL 479

Query: 115 VKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQS 174
           V+  +  + G + TC I    R +++  A + +F+ ++       S+K V+R+++ +K  
Sbjct: 480 VRVVEATSDGRVKTCRIHDLLREIMITKAKDQDFVAIAKEEGMVWSEK-VRRVSI-HKAV 537

Query: 175 DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENL 234
             +      S + S+L F       D     +    L  L VLDL    L ++PS + +L
Sbjct: 538 PSIQRRHVPSRLRSVLIFWGADSCPDSPAPNLSFGHLRLLNVLDLEGAPLKEFPSKVSSL 597

Query: 235 FLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271
           FLL+YL L   ++  +PSS +S LLNL TLD+  + I
Sbjct: 598 FLLKYLSLRNTNVNSIPSS-ISKLLNLETLDLKHTQI 633

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.590	0.202	0.359	4.1e-16
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.814	0.275	0.293	3.3e-12
TAIR|locus:2102857	847	AT3G46710 [Arabidopsis thalian	0.594	0.200	0.322	6.7e-12
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.611	0.194	0.326	6.6e-10
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.695	0.273	0.302	3.5e-09
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.660	0.208	0.301	4.8e-09
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.622	0.196	0.317	6.2e-09
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.639	0.174	0.299	2.9e-08
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.639	0.174	0.299	2.9e-08
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.625	0.176	0.304	4.9e-08

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 65/181 (35%), Positives = 93/181 (51%)

Query:    64 KLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEK----YLEQLINRGFVKANK 119
             KLCFLYLS+FP   EI   +L HL +AEGFI  + E   E     Y+E+LI+R  ++A  
Sbjct:   418 KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEA-V 476

Query:   120 RRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVHF 179
             RR  G + +C I    R V +  + E+ F+ +      + S    +R  V ++   +   
Sbjct:   477 RRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSE 536

Query:   180 VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239
                +  M S LYF  + DHL  +D+      L+ LRVLD GSL L    +G  +L  LRY
Sbjct:   537 KRKNKRMRSFLYF-GEFDHLVGLDFET----LKLLRVLDFGSLWLPFKING--DLIHLRY 589

Query:   240 L 240
             L
Sbjct:   590 L 590

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 78/266 (29%), Positives = 122/266 (45%)

Query:     1 FENGENVRLDIVPTGGPLRVTYQGWPF-LILYHGSISLEQNIE--EAIEGPMGRL----- 52
             F N E V  D+  TG  +     G P  +++  G +S ++  E  E       RL     
Sbjct:   341 FSNIEKVDEDLQRTGKEMVKKCGGLPLAIVVLSGLLSRKRTNEWHEVCASLWRRLKDNSI 400

Query:    53 ---TV--ISCKLPFH-LKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEK-- 104
                TV  +S K   H LKLCFLY SVFP   EI   +L HL +AEGFI ++ E   E   
Sbjct:   401 HISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVA 460

Query:   105 --YLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKK 162
               Y+++L++R  VKA +R   G + +C I    R + +  A E+ F+ +    +E++   
Sbjct:   461 RCYIDELVDRSLVKA-ERIERGKVMSCRIHDLLRDLAIKKAKELNFVNV---YNEKQHSS 516

Query:   163 NVKRINVFYKQSDFVHFVDD--DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLG 220
             ++ R  V +   +  +  D   +  M S L+   +      ++     L L+ LRVL++ 
Sbjct:   517 DICRREVVHHLMNDYYLCDRRVNKRMRSFLFIGERRG-FGYVN--TTNLKLKLLRVLNME 573

Query:   221 SLVLIQ------YPSGIENLFLLRYL 240
              L+ +        P  I  L  LRYL
Sbjct:   574 GLLFVSKNISNTLPDVIGELIHLRYL 599

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 62/192 (32%), Positives = 94/192 (48%)

Query:    63 LKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEK----YLEQLINRGFVKAN 118
             LKLCFLYLSVFP   E+   +L  L +AEGFI ++ E T E     Y+E L+    V+  
Sbjct:   410 LKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVV 469

Query:   119 KRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKSKKNVKRINVFYKQSDFVH 178
             KR+ G  + +  I    R   +  + E+ F+ +     E+ S    +R  V +   D  +
Sbjct:   470 KRKKG-KLMSFRIHDLVREFTIKKSKELNFVNV---YDEQHSSTTSRREVVHHLMDD--N 523

Query:   179 FVDD---DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-------QYP 228
             ++ D   ++ M S L+F  + + +  ++   I L L+ LRVL+LG L  I         P
Sbjct:   524 YLCDRRVNTQMRSFLFFGKRRNDITYVE--TITLKLKLLRVLNLGGLHFICQGYSPWSLP 581

Query:   229 SGIENLFLLRYL 240
               I  L  LRYL
Sbjct:   582 DVIGGLVHLRYL 593

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 63/193 (32%), Positives = 87/193 (45%)

Query:    59 LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEA--TAEKYLEQLINRGFVK 116
             LP  LK CFLYL+ FP   +I TR LY  W AEG I D      + E YLE+L+ R  V 
Sbjct:   413 LPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEG-IYDGLTILDSGEDYLEELVRRNLVI 471

Query:   117 ANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFL-------SFMVSERKSKKNVKRINV 169
             A K      +  C +    R V ++ A    F+ +       S ++++  S+   +R+ V
Sbjct:   472 AEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQSPSRS--RRLTV 529

Query:   170 FYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI--QY 227
              +    F H +     + SLL    K D    I        L  LRVLDL S+     + 
Sbjct:   530 -HSGKAF-HILGHKKKVRSLLVLGLKEDLW--IQSASRFQSLPLLRVLDLSSVKFEGGKL 585

Query:   228 PSGIENLFLLRYL 240
             PS I  L  LR+L
Sbjct:   586 PSSIGGLIHLRFL 598

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 68/225 (30%), Positives = 102/225 (45%)

Query:    33 GSISLEQNIEEAIEGPMGRLTVISCK-LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAE 91
             G  SL+ N+         R+  +S + LP  LK CFLYL+ FP + EI  ++L++   AE
Sbjct:   275 GRSSLDDNLNSIY-----RVLSLSYENLPMCLKHCFLYLAHFPEYYEIHVKRLFNYLAAE 329

Query:    92 GFIPDNSEATA-----EKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEV 146
             G I  + + T      E YLE+L  R  +  +K         C +    R V L+ A E 
Sbjct:   330 GIITSSDDGTTIQDKGEDYLEELARRNMITIDKNYMFLRKKHCQMHDMMREVCLSKAKEE 389

Query:   147 EFIFLSFMVSERKSKKNVKRINVFYKQSDFVHFVDD--------DSHMHSLLYFTSKSDH 198
              F+ + F VS   S  N + ++   + S  VH  +         +  + SLLYF  + D 
Sbjct:   390 NFLEI-FKVSTATSAINARSLSKSRRLS--VHGGNALPSLGQTINKKVRSLLYFAFE-DE 445

Query:   199 LDPIDWGIICLM-LEFLRVLDLGSLVLI--QYPSGIENLFLLRYL 240
                ++    C   L  LRVLDL  +     + PS I +L  LR+L
Sbjct:   446 FCILESTTPCFRSLPLLRVLDLSRVKFEGGKLPSSIGDLIHLRFL 490

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 61/202 (30%), Positives = 95/202 (47%)

Query:    49 MGRLTVISCK-LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS--EATAEKY 105
             + R+  +S + LP HLK  FLYL+ FP   +I T+ L++ W AEG I D S  + + E Y
Sbjct:   408 VNRILSLSYEDLPTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEG-IYDGSTIQDSGEYY 466

Query:   106 LEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFL-----SFMVSERKS 160
             LE+L+ R  V A+ R      + C +    R V L+ A E  F+ +     S      +S
Sbjct:   467 LEELVRRNLVIADNRYLSLEFNFCQMHDMMREVCLSKAKEENFLQIIKDPTSTSTINAQS 526

Query:   161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLG 220
                 +R ++   ++  +    ++  + SL+    + D    I    +   L  LRVLDL 
Sbjct:   527 PSRSRRFSIHSGKAFHILGHRNNPKVRSLIVSRFEEDFW--IRSASVFHNLTLLRVLDLS 584

Query:   221 SLVLI--QYPSGIENLFLLRYL 240
              +     + PS I  L  LRYL
Sbjct:   585 RVKFEGGKLPSSIGGLIHLRYL 606

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 61/192 (31%), Positives = 88/192 (45%)

Query:    59 LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNS--EATAEKYLEQLINRGFVK 116
             LP HLK CFL L+ FP   EIST  L++ W AEG I D S  E + E YLE+L+ R  V 
Sbjct:   419 LPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEG-IYDGSTIEDSGEYYLEELVRRNLVI 477

Query:   117 ANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSF-----MVSERKSKKNVKRINVFY 171
             A+          C +    R V L+ A E  F+ +            +S    +R+++  
Sbjct:   478 ADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQSPSRSRRLSIHS 537

Query:   172 KQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ---YP 228
              ++  +    + + + SL+    + D+   I    +   L  LRVLDL S V  +    P
Sbjct:   538 GKAFHILGHKNKTKVRSLIVPRFEEDYW--IRSASVFHNLTLLRVLDL-SWVKFEGGKLP 594

Query:   229 SGIENLFLLRYL 240
               I  L  LRYL
Sbjct:   595 CSIGGLIHLRYL 606

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 59/197 (29%), Positives = 85/197 (43%)

Query:    58 KLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEG-FIPDNSEA-----TAEKYLEQLIN 111
             +LP +LK CFLYL+ FP   EI+ + L + W AEG F P + +        + Y+E+L+ 
Sbjct:   419 ELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVR 478

Query:   112 RGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFL-SFMVSERKSKKNVKRINVF 170
             R  V + +        TC +    R V L  A E  F+ + S   S   S   V    + 
Sbjct:   479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLV 538

Query:   171 YKQSDFVHFVDD--DSHMHSLLYFTSKSDHLDPIDW---GIICLMLEFLRVLDLGSLVLI 225
             Y+    +    D  D  + SL+   +         W   G   + LE LRVLD+    L 
Sbjct:   539 YQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLK 598

Query:   226 --QYPSGIENLFLLRYL 240
               +  S I  L  LRYL
Sbjct:   599 GGKLASSIGQLIHLRYL 615

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 59/197 (29%), Positives = 85/197 (43%)

Query:    58 KLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEG-FIPDNSEA-----TAEKYLEQLIN 111
             +LP +LK CFLYL+ FP   EI+ + L + W AEG F P + +        + Y+E+L+ 
Sbjct:   419 ELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVR 478

Query:   112 RGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFL-SFMVSERKSKKNVKRINVF 170
             R  V + +        TC +    R V L  A E  F+ + S   S   S   V    + 
Sbjct:   479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLV 538

Query:   171 YKQSDFVHFVDD--DSHMHSLLYFTSKSDHLDPIDW---GIICLMLEFLRVLDLGSLVLI 225
             Y+    +    D  D  + SL+   +         W   G   + LE LRVLD+    L 
Sbjct:   539 YQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLK 598

Query:   226 --QYPSGIENLFLLRYL 240
               +  S I  L  LRYL
Sbjct:   599 GGKLASSIGQLIHLRYL 615

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 59/194 (30%), Positives = 86/194 (44%)

Query:    58 KLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEG-FIPDNSEA-----TAEKYLEQLIN 111
             +LP +LK CFLYL+ FP   EI    L + W AEG F P + +        + Y+E+L+ 
Sbjct:   419 ELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVR 478

Query:   112 RGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFL-SFMVSERKSKKNVKRINVF 170
             R  V + +        TC +    R V L  A E  F+ + S   S    +  V      
Sbjct:   479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRPSTANLQSTVTSRRFV 538

Query:   171 YKQSDFVHFVDDDSH--MHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI--Q 226
             Y+    +H   D ++  + +L+  T  S +L     G     LE LRVLDL  + +   +
Sbjct:   539 YQYPTTLHVEKDINNPKLRALVVVTLGSWNLA----GSSFTRLELLRVLDLIEVKIKGGK 594

Query:   227 YPSGIENLFLLRYL 240
               S I  L  LRYL
Sbjct:   595 LASCIGKLIHLRYL 608

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033827001 SubName- Full=Chromosome undetermined scaffold_70, whole genome shotgun sequence; (893 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-08

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 58  KLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIP 95
            LP HLK CFLYL++FP    I   QL  LWIAEGF+ 
Sbjct: 244 NLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.33
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.1
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.09
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.03
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.02
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
PLN03150	623	hypothetical protein; Provisional	98.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.62
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.6
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.51
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
PLN03150	623	hypothetical protein; Provisional	98.46
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.39
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.25
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.35
PRK15386	426	type III secretion protein GogB; Provisional	97.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.17
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.08
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.86
PRK15386	426	type III secretion protein GogB; Provisional	96.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.28
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.48
smart00370	26	LRR Leucine-rich repeats, outliers.	95.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.24
smart00370	26	LRR Leucine-rich repeats, outliers.	94.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.94
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	90.35
PRK04841	903	transcriptional regulator MalT; Provisional	90.12
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.23
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.87
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.06

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-50  Score=386.06  Aligned_cols=271  Identities=27%  Similarity=0.376  Sum_probs=228.3

Q ss_pred             CCCccchhHHHHhhhhcCC--CcCCccchhhhhhccccccCcc--ccccchhhHHhhhccCCChhhHHHHhhhccCCCCc
Q 048591            2 ENGENVRLDIVPTGGPLRV--TYQGWPFLILYHGSISLEQNIE--EAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHL   77 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~--~~~~W~~~~~~l~~~~~~~~~~--~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~   77 (286)
                      +||+|||||++|+|+.|+.  +..+|++   +.+.+.+....+  ...+.|+++|++|||.||+++|.||+|||+||+||
T Consensus       350 ~kC~GLPLAl~viG~~ma~K~t~~eW~~---~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~  426 (889)
T KOG4658|consen  350 EKCGGLPLALNVLGGLLACKKTVQEWRR---ALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDY  426 (889)
T ss_pred             HHhCChHHHHHHHHHHhcCCCcHHHHHH---HHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCccc
Confidence            5899999999999999999  8889999   666655552221  23478999999999999999999999999999999


Q ss_pred             eeeHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhhc-----ccC
Q 048591           78 EISTRQLYHLWIAEGFIPD-----NSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVAS-----EVE  147 (286)
Q Consensus        78 ~i~~~~li~~w~a~g~i~~-----~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~~-----~~~  147 (286)
                      .|++++|+.+|+||||+.+     ++++.|+.|+.+||++++++..+..  ++...|+|||+|||+|.++++     +++
T Consensus       427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~  504 (889)
T KOG4658|consen  427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEEN  504 (889)
T ss_pred             ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccc
Confidence            9999999999999999976     8899999999999999999987754  666899999999999999999     666


Q ss_pred             eEEeeeeec-----CCC--CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCC--CCCCCchhhhhhcCCCceEEEE
Q 048591          148 FIFLSFMVS-----ERK--SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKS--DHLDPIDWGIICLMLEFLRVLD  218 (286)
Q Consensus       148 ~~~~~~~~~-----~~~--~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~--~~~~~~~~~~~~~~l~~Lr~L~  218 (286)
                      .+..   .+     .++  .+..+|++++..+...........++|+||.+.++..  ..    ....+|..++.||+||
T Consensus       505 ~iv~---~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLD  577 (889)
T KOG4658|consen  505 QIVS---DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLD  577 (889)
T ss_pred             eEEE---CCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh----cCHHHHhhCcceEEEE
Confidence            4433   22     011  5678999999998865443333778999999999863  22    4567799999999999


Q ss_pred             eeCCC-CccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCC-ccccchHHhhhhccC
Q 048591          219 LGSLV-LIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSY-IDHTADEFTLHARNT  285 (286)
Q Consensus       219 l~~~~-l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~-l~~lP~~i~~L~~~~  285 (286)
                      |++|. +.++|++|++|.|||||+++++.++.||.++ ++|+.|.+||+..+. +..+|..+..|++|.
T Consensus       578 Ls~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  578 LSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             CCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhheeccccccccccccchhhhccccc
Confidence            99887 8999999999999999999999999999999 999999999999985 455555555576653

>PLN03210 Resistant to P

Probab=99.97  E-value=6.9e-31  Score=263.65  Aligned_cols=257  Identities=17%  Similarity=0.106  Sum_probs=170.3

Q ss_pred             CCCccchhHHHHhhhhcCC-CcCCccchhhhhhccccccCccccccchhhHHhhhccCCCh-hhHHHHhhhccCCCCcee
Q 048591            2 ENGENVRLDIVPTGGPLRV-TYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPF-HLKLCFLYLSVFPAHLEI   79 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~-~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~-~~k~cFl~~a~Fp~~~~i   79 (286)
                      ++|+|+||||+++|+.|++ +..+|+.   +++++.+...     .+|.++|++|||+|++ .+|.||+||||||.++.+
T Consensus       383 ~~c~GLPLAl~vlgs~L~~k~~~~W~~---~l~~L~~~~~-----~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~  454 (1153)
T PLN03210        383 LRAGNLPLGLNVLGSYLRGRDKEDWMD---MLPRLRNGLD-----GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV  454 (1153)
T ss_pred             HHhCCCcHHHHHHHHHHcCCCHHHHHH---HHHHHHhCcc-----HHHHHHHHHhhhccCccchhhhhheehhhcCCCCH
Confidence            4799999999999999999 9999999   7777766544     5799999999999987 599999999999998754


Q ss_pred             eHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhhcccCeE--Eeeeeec-
Q 048591           80 STRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFI--FLSFMVS-  156 (286)
Q Consensus        80 ~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~~~~~~~--~~~~~~~-  156 (286)
                         +.+..|++.+...      ++..++.|++++|++...       ..++|||++|+||+.+++++...  ..++... 
T Consensus       455 ---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~  518 (1153)
T PLN03210        455 ---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA  518 (1153)
T ss_pred             ---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH
Confidence               3577788776553      233488999999998753       35899999999999998765310  0000011 


Q ss_pred             --------CCCCCCCEEEEEEecCCCcc----cccCCCCCCeeEEEEecCCCCCCC------------------------
Q 048591          157 --------ERKSKKNVKRINVFYKQSDF----VHFVDDDSHMHSLLYFTSKSDHLD------------------------  200 (286)
Q Consensus       157 --------~~~~~~~~r~l~l~~~~~~~----~~~~~~~~~Lr~L~l~~~~~~~~~------------------------  200 (286)
                              .......++.+++.......    ...+.++++|+.|.+..+......                        
T Consensus       519 ~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~  598 (1153)
T PLN03210        519 KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK  598 (1153)
T ss_pred             HHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC
Confidence                    11144566777665443221    112335666666655433211000                        


Q ss_pred             --CchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeecccc-ccccchhHhhCCCCccEEecCCC-Cccccch
Q 048591          201 --PIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPS-LKILPSSLLSNLLNLYTLDMPFS-YIDHTAD  276 (286)
Q Consensus       201 --~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~  276 (286)
                        ...+|..+ .+.+|+.|++.++.++.+|..+..+++|++|+|+++. ++.+|. + +.+++|++|++.+| .+.++|.
T Consensus       599 ~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        599 YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccch
Confidence              00122222 3456666666666666666666677777777777653 566664 5 66777777777776 3466777


Q ss_pred             HHhhhhccC
Q 048591          277 EFTLHARNT  285 (286)
Q Consensus       277 ~i~~L~~~~  285 (286)
                      .+++|++|+
T Consensus       676 si~~L~~L~  684 (1153)
T PLN03210        676 SIQYLNKLE  684 (1153)
T ss_pred             hhhccCCCC
Confidence            766666553

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.69  E-value=3.1e-18  Score=148.06  Aligned_cols=91  Identities=30%  Similarity=0.480  Sum_probs=76.3

Q ss_pred             CCCccchhHHHHhhhhcCC--CcCCccchhhhhhccccccCcc-ccccchhhHHhhhccCCChhhHHHHhhhccCCCCce
Q 048591            2 ENGENVRLDIVPTGGPLRV--TYQGWPFLILYHGSISLEQNIE-EAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLE   78 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~--~~~~W~~~~~~l~~~~~~~~~~-~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~   78 (286)
                      ++|+|+||||+++|++|+.  +.++|+.   +++++.+..... .....+..++.+||+.||+++|+||+|||+||+++.
T Consensus       190 ~~c~glPLal~~~a~~l~~~~~~~~w~~---~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~  266 (287)
T PF00931_consen  190 EKCGGLPLALKLIASYLRSKSTVDEWEE---ALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVP  266 (287)
T ss_dssp             HHTTT-HHHHHHHHHHHHHHHSSSSHHH---HHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-
T ss_pred             cccccccccccccccccccccccccccc---ccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCce
Confidence            4799999999999999977  8999999   665554444321 124679999999999999999999999999999999


Q ss_pred             eeHHHHHHHHHHccCCC
Q 048591           79 ISTRQLYHLWIAEGFIP   95 (286)
Q Consensus        79 i~~~~li~~w~a~g~i~   95 (286)
                      |+++.++++|+++|||.
T Consensus       267 i~~~~li~lW~~e~~i~  283 (287)
T PF00931_consen  267 IPRERLIRLWVAEGFIS  283 (287)
T ss_dssp             EEHHHHHHHHTT-HHTC
T ss_pred             ECHHHHHHHHHHCCCCc
Confidence            99999999999999986

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.33  E-value=1.1e-13  Score=107.02  Aligned_cols=118  Identities=21%  Similarity=0.133  Sum_probs=88.4

Q ss_pred             CCCEEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc--cCchhhcccccc
Q 048591          161 KKNVKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI--QYPSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~L  237 (286)
                      ..++..+.+..+.. +.+..+..+++||.|.+..+...     ..|..|++++-|++|||++|.+.  .+|..+..+..|
T Consensus        55 l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-----~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-----ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-----cCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence            34455556666553 35555557778888877766665     56778888888888888888865  677777778888


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      |-|.|+.|.++-+|..+ |+|++||.|.+++|.+-++|..++.|+++
T Consensus       130 ralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lpkeig~lt~l  175 (264)
T KOG0617|consen  130 RALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLPKEIGDLTRL  175 (264)
T ss_pred             HHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence            88888888888888888 88888888888888888888888887765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.10  E-value=3.6e-12  Score=98.63  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=106.2

Q ss_pred             CCCCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591          160 SKKNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR  238 (286)
Q Consensus       160 ~~~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~  238 (286)
                      ...++|++.+..+. ...+..++.++.|+.|++..+.....   .+|..|-.+..||.|.|+.|.++-+|..+|+|++|+
T Consensus        77 sl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~---~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lq  153 (264)
T KOG0617|consen   77 SLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQ  153 (264)
T ss_pred             hchhhhheecchhhhhcCccccCCCchhhhhhccccccccc---cCCcchhHHHHHHHHHhcCCCcccCChhhhhhccee
Confidence            45678888887766 34667788999999999988877543   567778889999999999999999999999999999


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      .|.++.|.+-++|..| |.|..|+.|.+.+|++..+|+.++++..
T Consensus       154 il~lrdndll~lpkei-g~lt~lrelhiqgnrl~vlppel~~l~l  197 (264)
T KOG0617|consen  154 ILSLRDNDLLSLPKEI-GDLTRLRELHIQGNRLTVLPPELANLDL  197 (264)
T ss_pred             EEeeccCchhhCcHHH-HHHHHHHHHhcccceeeecChhhhhhhh
Confidence            9999999999999999 9999999999999999999999998754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.09  E-value=1.3e-11  Score=112.47  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=67.9

Q ss_pred             CCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          162 KNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       162 ~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      .++.|+++..|. ..+...+..++.||++++..|+....   .+|+.+-.+..|.+|||+.|++.+.|..+..-+++-.|
T Consensus        55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL  131 (1255)
T ss_pred             hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC---CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence            345555555444 22333333566666666666555332   34445555666666666666666666666666666666


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      +||+|+|..+|.++|-+|+-|-.|||++|++..+|+.+.+|..
T Consensus       132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~  174 (1255)
T KOG0444|consen  132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM  174 (1255)
T ss_pred             EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence            6666666666666555666666666666666666665555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.03  E-value=4.4e-10  Score=112.73  Aligned_cols=99  Identities=18%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             CCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccceeeecccccc-ccchhHhhCC
Q 048591          181 DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-ILPSSLLSNL  258 (286)
Q Consensus       181 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~~L  258 (286)
                      +.+++|+.|.+.++....    ..|..+.++++|++|++++|.+. .+|..++++++|++|++++|++. .+|..+ +++
T Consensus       161 ~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l  235 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGL  235 (968)
T ss_pred             hcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcC
Confidence            344555555555544432    33444555555555555555543 44555555555555555555543 455555 566


Q ss_pred             CCccEEecCCCCc-cccchHHhhhhcc
Q 048591          259 LNLYTLDMPFSYI-DHTADEFTLHARN  284 (286)
Q Consensus       259 ~~L~~L~l~~~~l-~~lP~~i~~L~~~  284 (286)
                      ++|++|++++|++ ..+|..++++++|
T Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L  262 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIPSSLGNLKNL  262 (968)
T ss_pred             CCCCEEECcCceeccccChhHhCCCCC
Confidence            6666666666555 3455555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.02  E-value=4.3e-10  Score=112.84  Aligned_cols=120  Identities=18%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             CCCEEEEEEecCCC--cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccccc
Q 048591          161 KKNVKRINVFYKQS--DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L  237 (286)
                      ..+++.+.+..+..  ..+..+.++++|++|.+.++....    ..|..+.++++|+.|++++|.+. .+|..++.+++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL  238 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC----cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence            45666677666652  344445567777777777776654    45566777777777777777765 677777777777


Q ss_pred             ceeeecccccc-ccchhHhhCCCCccEEecCCCCc-cccchHHhhhhccC
Q 048591          238 RYLKLNIPSLK-ILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~-~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~~~  285 (286)
                      ++|++++|.+. .+|.++ +++++|++|++++|.+ ..+|..++++++|+
T Consensus       239 ~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  287 (968)
T PLN00113        239 NHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI  287 (968)
T ss_pred             CEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence            77777777754 567777 7777777777777766 56777777666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.96  E-value=4.6e-11  Score=108.97  Aligned_cols=104  Identities=15%  Similarity=0.073  Sum_probs=85.8

Q ss_pred             ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHh
Q 048591          176 FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLL  255 (286)
Q Consensus       176 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~  255 (286)
                      +|.++..+.+|+-++++.|...     ..|..+-++++||.|+|++|.++++-..++...+|+.|++|.|.+..||..+ 
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av-  287 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV-  287 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-----cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH-
Confidence            4555557778888888877775     5778888888888888888888888888888888888888888888889888 


Q ss_pred             hCCCCccEEecCCCCc--cccchHHhhhhccC
Q 048591          256 SNLLNLYTLDMPFSYI--DHTADEFTLHARNT  285 (286)
Q Consensus       256 ~~L~~L~~L~l~~~~l--~~lP~~i~~L~~~~  285 (286)
                      ++|+.|+.|.+.+|++  ..+|++||+|..|+
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            8888888888888865  78888888888775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=8.4e-10  Score=72.27  Aligned_cols=60  Identities=33%  Similarity=0.393  Sum_probs=53.6

Q ss_pred             CceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591          212 EFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       212 ~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      ++|+.|++++|.++.+| ..+..+++|++|++++|.++.+|+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999999888 5678899999999999999999886669999999999999875

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.86  E-value=7.3e-11  Score=102.39  Aligned_cols=113  Identities=18%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             CCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhc-cccccce
Q 048591          162 KNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIE-NLFLLRY  239 (286)
Q Consensus       162 ~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~L~~  239 (286)
                      +.+.++....+. ...|+.++.+.+|.-|++..+....     .| .|.++..|..|++..|.++.+|..++ +|.+|..
T Consensus       183 ~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence            334455554444 3355555566666666666666542     22 44444444444444444444444444 4445555


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhh
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLH  281 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L  281 (286)
                      |||+.|+++++|..+ +.|++|++||+++|.+..+|.++|+|
T Consensus       257 LDLRdNklke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  257 LDLRDNKLKEVPDEI-CLLRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             eeccccccccCchHH-HHhhhhhhhcccCCccccCCcccccc
Confidence            555555555555555 55555555555555555555444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.83  E-value=3.8e-10  Score=98.01  Aligned_cols=82  Identities=26%  Similarity=0.297  Sum_probs=53.7

Q ss_pred             hhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccc-----------------------hh-HhhCC
Q 048591          203 DWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILP-----------------------SS-LLSNL  258 (286)
Q Consensus       203 ~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP-----------------------~~-i~~~L  258 (286)
                      .++..++.+++|..|+|++|.+..+|..++.+..||.|+++.|+++.+|                       .+ + +++
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l-~nm  504 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGL-KNM  504 (565)
T ss_pred             cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHh-hhh
Confidence            3455556666666666666666666666666666666666655544333                       33 5 677


Q ss_pred             CCccEEecCCCCccccchHHhhhhccC
Q 048591          259 LNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       259 ~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      .+|.+||+.+|.+..+|+.+|++++++
T Consensus       505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQQIPPILGNMTNLR  531 (565)
T ss_pred             hhcceeccCCCchhhCChhhcccccee
Confidence            778888888888888888888877665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=6.7e-09  Score=82.51  Aligned_cols=118  Identities=18%  Similarity=0.108  Sum_probs=48.6

Q ss_pred             CCCEEEEEEecCCCcccccCC-CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhc-cccccc
Q 048591          161 KKNVKRINVFYKQSDFVHFVD-DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIE-NLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~L~  238 (286)
                      +.+.|.+.+.++.....+.++ .+.+|+.|++.+|.....      +.+..++.|+.|++++|.++.+++.+. .+++|+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            345688999998877776665 578999999999998642      357789999999999999999876653 689999


Q ss_pred             eeeeccccccccch--hHhhCCCCccEEecCCCCccccch----HHhhhhccC
Q 048591          239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHTAD----EFTLHARNT  285 (286)
Q Consensus       239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~~~  285 (286)
                      .|++++|+|..+-.  .+ ..+++|+.|++.+|.+.+.|.    -|..+|+|.
T Consensus        92 ~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk  143 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK  143 (175)
T ss_dssp             EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred             EEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence            99999998876533  45 789999999999998865553    355666553

>PLN03150 hypothetical protein; Provisional

Probab=98.80  E-value=9.7e-09  Score=97.87  Aligned_cols=92  Identities=16%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccceeeecccccc-ccchhHhhCCCCcc
Q 048591          185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-ILPSSLLSNLLNLY  262 (286)
Q Consensus       185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~~L~~L~  262 (286)
                      .++.|.+.++...+    .++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|++. .+|.++ ++|++|+
T Consensus       419 ~v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCC
Confidence            37778888877765    56778899999999999999987 88989999999999999999987 789999 9999999


Q ss_pred             EEecCCCCc-cccchHHhhh
Q 048591          263 TLDMPFSYI-DHTADEFTLH  281 (286)
Q Consensus       263 ~L~l~~~~l-~~lP~~i~~L  281 (286)
                      +|+|++|++ ..+|..++.+
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             EEECcCCcccccCChHHhhc
Confidence            999999988 6899888764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.62  E-value=4.1e-08  Score=89.34  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             CCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc
Q 048591          161 KKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~  238 (286)
                      ..+++.+.+..|... +|...+...+++.|.+.+|.+..    .-.+.+..++.||+|||+.|.++++| +++..-.+++
T Consensus       101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen  101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             CCcceeeeeccchhhhcccccccccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            445566666666533 44444355567777777777665    33456666777777777777776665 3444445666


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhh-hhccC
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTL-HARNT  285 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~-L~~~~  285 (286)
                      +|+|++|+|..+-..-|..|.+|.+|.|+.|++..+|..+.+ |++|+
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~  224 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE  224 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence            666666666655443335566666666666666666654333 55543

>PLN03210 Resistant to P

Probab=98.61  E-value=8.6e-08  Score=97.65  Aligned_cols=110  Identities=23%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             CCCEEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccc
Q 048591          161 KKNVKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~  238 (286)
                      +.++|.+.+..+.. ..|..+ ...+|+.|.+.++...     .++..+..+++|+.|+|+++. +..+| .++.+++|+
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le  660 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLE  660 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCC-ccccCCccc
Confidence            44566666665542 233333 4566666666665543     233344556666666666554 45555 355666666


Q ss_pred             eeeecccc-ccccchhHhhCCCCccEEecCCC-CccccchHH
Q 048591          239 YLKLNIPS-LKILPSSLLSNLLNLYTLDMPFS-YIDHTADEF  278 (286)
Q Consensus       239 ~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~i  278 (286)
                      +|++++|. +..+|.++ ++|++|+.|++++| .+..+|.++
T Consensus       661 ~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             EEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC
Confidence            66666653 55666666 66666666666665 345566543

syringae 6; Provisional

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.60  E-value=4.8e-08  Score=59.12  Aligned_cols=40  Identities=35%  Similarity=0.346  Sum_probs=28.2

Q ss_pred             cccceeeeccccccccchhHhhCCCCccEEecCCCCccccc
Q 048591          235 FLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       235 ~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP  275 (286)
                      ++|++|++++|+|+.+|..+ ++|++|++|++++|++.++|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence            35777777777777777777 77777777777777776665

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.54  E-value=7.1e-08  Score=76.65  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhc-CCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICL-MLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      +..+++.|.+.++.+..     + +.++ .+.+|++|++++|.++.++ .+..+++|+.|++++|+|+.+++.+...+++
T Consensus        17 n~~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             ccccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            56678999999998863     2 2344 5789999999999999886 6888999999999999999998766246899


Q ss_pred             ccEEecCCCCccccc--hHHhhhhccC
Q 048591          261 LYTLDMPFSYIDHTA--DEFTLHARNT  285 (286)
Q Consensus       261 L~~L~l~~~~l~~lP--~~i~~L~~~~  285 (286)
                      |+.|++++|++.++-  ..+..+++|+
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            999999999875543  2344555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.51  E-value=7.2e-08  Score=62.98  Aligned_cols=60  Identities=30%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccc
Q 048591          184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSL  247 (286)
Q Consensus       184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i  247 (286)
                      |+|++|.+.++....    ..+..|..+++|++|++++|.++.+| ..+..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE----IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE----ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc----cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999998765    55678999999999999999999887 4779999999999999975

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=1.3e-07  Score=57.26  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=35.7

Q ss_pred             CceEEEEeeCCCCccCchhhccccccceeeeccccccccch
Q 048591          212 EFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPS  252 (286)
Q Consensus       212 ~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~  252 (286)
                      ++|++|++++|.++.+|..+++|++|++|++++|+|+.+|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            47899999999999999889999999999999999987764

...

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=3.6e-07  Score=87.20  Aligned_cols=107  Identities=18%  Similarity=0.133  Sum_probs=87.9

Q ss_pred             EEEEEEecCCC--cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccccccee
Q 048591          164 VKRINVFYKQS--DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYL  240 (286)
Q Consensus       164 ~r~l~l~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L  240 (286)
                      ++.+.+..+..  ..+..+..+++|+.|.+.+|...+    .+|..+..+++|+.|+|++|.+. .+|..++++++|++|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            56666666553  355556689999999999998876    57788999999999999999987 899999999999999


Q ss_pred             eecccccc-ccchhHhhCC-CCccEEecCCCC-ccccc
Q 048591          241 KLNIPSLK-ILPSSLLSNL-LNLYTLDMPFSY-IDHTA  275 (286)
Q Consensus       241 ~L~~~~i~-~LP~~i~~~L-~~L~~L~l~~~~-l~~lP  275 (286)
                      +|++|.+. .+|..+ +.+ .++..+++.+|. +...|
T Consensus       496 ~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        496 NLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ECcCCcccccCChHH-hhccccCceEEecCCccccCCC
Confidence            99999976 899998 764 578899999884 33344

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.43  E-value=3.3e-08  Score=83.29  Aligned_cols=98  Identities=20%  Similarity=0.158  Sum_probs=57.9

Q ss_pred             cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCC
Q 048591          179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNL  258 (286)
Q Consensus       179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L  258 (286)
                      ++.-.|++|.|+++.|....      -..+..+++|..|||++|.+.++-..-.+|-+.+.|.|.+|.|+.| +.+ ++|
T Consensus       302 SvKL~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL-~KL  373 (490)
T KOG1259|consen  302 SVKLAPKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGL-RKL  373 (490)
T ss_pred             hhhhccceeEEeccccceee------ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhh-Hhh
Confidence            33345777777777777642      1336677777778888777665544333444555555555555555 234 666


Q ss_pred             CCccEEecCCCCccccc--hHHhhhhcc
Q 048591          259 LNLYTLDMPFSYIDHTA--DEFTLHARN  284 (286)
Q Consensus       259 ~~L~~L~l~~~~l~~lP--~~i~~L~~~  284 (286)
                      ++|..||+++|+++++-  .+||+||.|
T Consensus       374 YSLvnLDl~~N~Ie~ldeV~~IG~LPCL  401 (490)
T KOG1259|consen  374 YSLVNLDLSSNQIEELDEVNHIGNLPCL  401 (490)
T ss_pred             hhheeccccccchhhHHHhcccccccHH
Confidence            66666666666654443  245555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.42  E-value=4.3e-07  Score=89.15  Aligned_cols=97  Identities=26%  Similarity=0.250  Sum_probs=78.4

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC--CccCchh-hccccccceeeecccc-ccccchhHhhC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV--LIQYPSG-IENLFLLRYLKLNIPS-LKILPSSLLSN  257 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--l~~lp~~-i~~L~~L~~L~L~~~~-i~~LP~~i~~~  257 (286)
                      .....|...+.++.....      ..-...+.|+.|-+.++.  +..++.. +..+++|++|||++|. +.+||++| ++
T Consensus       521 ~~~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~  593 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GE  593 (889)
T ss_pred             chhheeEEEEeccchhhc------cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hh
Confidence            556788888888776432      112233468888888886  6666644 7779999999999885 89999999 99


Q ss_pred             CCCccEEecCCCCccccchHHhhhhccC
Q 048591          258 LLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       258 L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      |-+|++|+++++.+..+|.++++|.+|.
T Consensus       594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGISHLPSGLGNLKKLI  621 (889)
T ss_pred             hhhhhcccccCCCccccchHHHHHHhhh
Confidence            9999999999999999999999998763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.42  E-value=5.7e-08  Score=92.48  Aligned_cols=95  Identities=27%  Similarity=0.343  Sum_probs=84.0

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCcc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY  262 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~  262 (286)
                      .-+|++|++.++...     .+|..+..+.+|+.|.++.|.+.++|.+++++.+|+||.|.+|.+..+|.++ ..+++|+
T Consensus        44 ~v~L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~  117 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQ  117 (1081)
T ss_pred             eeeeEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhccc
Confidence            445999999998886     4667788889999999999999999999999999999999999999999999 9999999


Q ss_pred             EEecCCCCccccchHHhhhhc
Q 048591          263 TLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       263 ~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      +|+++.|.+..+|.-|..++.
T Consensus       118 ~LdlS~N~f~~~Pl~i~~lt~  138 (1081)
T KOG0618|consen  118 YLDLSFNHFGPIPLVIEVLTA  138 (1081)
T ss_pred             ccccchhccCCCchhHHhhhH
Confidence            999999999989987766653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.39  E-value=8e-08  Score=80.99  Aligned_cols=110  Identities=17%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      ...++|.+.++.|.......+..+++|..|++++|....     ....-.++-+++.|.|++|.++.+. .+++|-+|.+
T Consensus       305 L~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvn  378 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-----CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVN  378 (490)
T ss_pred             hccceeEEeccccceeeehhhhhcccceEeecccchhHh-----hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhhee
Confidence            456899999998887766667789999999999998863     4455567889999999999998774 7899999999


Q ss_pred             eeeccccccccc--hhHhhCCCCccEEecCCCCccccch
Q 048591          240 LKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDHTAD  276 (286)
Q Consensus       240 L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~lP~  276 (286)
                      ||+++|+|+++-  .+| |+|+.|+++.+.+|.+..+|+
T Consensus       379 LDl~~N~Ie~ldeV~~I-G~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  379 LDLSSNQIEELDEVNHI-GNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ccccccchhhHHHhccc-ccccHHHHHhhcCCCccccch
Confidence            999999999774  479 999999999999999888775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.37  E-value=3.4e-08  Score=93.92  Aligned_cols=78  Identities=26%  Similarity=0.239  Sum_probs=64.0

Q ss_pred             hhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591          205 GIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       205 ~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      -+.+.++++||+|+|++|++.++| ..+.++..|+.|+||||+++.||.++ .++..|++|...+|++..+| .+.+++.
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv-a~~~~L~tL~ahsN~l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTV-ANLGRLHTLRAHSNQLLSFP-ELAQLPQ  453 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHH-HhhhhhHHHhhcCCceeech-hhhhcCc
Confidence            356778888999999999888888 45778888888999999888888888 88888888888888888888 6776665


Q ss_pred             c
Q 048591          284 N  284 (286)
Q Consensus       284 ~  284 (286)
                      +
T Consensus       454 L  454 (1081)
T KOG0618|consen  454 L  454 (1081)
T ss_pred             c
Confidence            5

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.34  E-value=8.3e-07  Score=85.82  Aligned_cols=103  Identities=12%  Similarity=0.123  Sum_probs=71.2

Q ss_pred             CCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          161 KKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      +..++.+.+..+... ++...  .++|++|.+.+|....     +|..+.  .+|+.|++++|.+..+|..+.  .+|++
T Consensus       198 p~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~  266 (754)
T PRK15370        198 PEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRITELPERLP--SALQS  266 (754)
T ss_pred             ccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccCcCChhHh--CCCCE
Confidence            445677777766643 33222  3578888887776653     233222  367888888888888887664  47888


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE  277 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~  277 (286)
                      |++++|++..+|..+ .  .+|++|++++|++..+|..
T Consensus       267 L~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~~  301 (754)
T PRK15370        267 LDLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPAH  301 (754)
T ss_pred             EECcCCccCcccccc-C--CCCcEEECCCCccccCccc
Confidence            888888888888877 4  4788888888888777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.28  E-value=1.1e-06  Score=84.77  Aligned_cols=87  Identities=17%  Similarity=0.107  Sum_probs=62.2

Q ss_pred             CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591          185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL  264 (286)
Q Consensus       185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L  264 (286)
                      +|+.|.+.+|.+..     +|.   ..+.|+.|++++|.++.+|...   .+|++|++++|.|+.+|.++ +++.+|+.|
T Consensus       383 ~L~~LdLs~N~Lt~-----LP~---l~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl-~~L~~L~~L  450 (788)
T PRK15387        383 GLKELIVSGNRLTS-----LPV---LPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESL-IHLSSETTV  450 (788)
T ss_pred             ccceEEecCCcccC-----CCC---cccCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHH-hhccCCCeE
Confidence            55666666655542     221   1246777888888887777533   46788999999999999998 999999999


Q ss_pred             ecCCCCc-cccchHHhhhhc
Q 048591          265 DMPFSYI-DHTADEFTLHAR  283 (286)
Q Consensus       265 ~l~~~~l-~~lP~~i~~L~~  283 (286)
                      ++++|++ ...|..+.++..
T Consensus       451 dLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        451 NLEGNPLSERTLQALREITS  470 (788)
T ss_pred             ECCCCCCCchHHHHHHHHhc
Confidence            9999988 556666655543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.25  E-value=4.6e-07  Score=82.67  Aligned_cols=108  Identities=17%  Similarity=0.092  Sum_probs=77.5

Q ss_pred             CCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhcccccc
Q 048591          161 KKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L  237 (286)
                      ...+.++.+..|.....  +.+..++.||+|+++.|.+..    ...+.|..-.+++.|+|++|+|+.+- ..+..+.+|
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~----i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE----IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc----ccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence            45577788877775422  233367788888888877765    34456666677888888888877554 456677788


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCcc
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~  272 (286)
                      ..|.|+.|+|+.||.-+|.+|++|+.|+|..|.++
T Consensus       200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             eeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            88888888888888877667888888888887653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.20  E-value=1.5e-06  Score=83.84  Aligned_cols=67  Identities=19%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             CceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          212 EFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       212 ~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      .+|+.|++++|.++.+|...   .+|++|++++|.++.+|... .   +|+.|++++|++..+|..++++++++
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l~-~---~L~~L~Ls~NqLt~LP~sl~~L~~L~  448 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLP-S---GLLSLSVYRNQLTRLPESLIHLSSET  448 (788)
T ss_pred             cccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcch-h---hhhhhhhccCcccccChHHhhccCCC
Confidence            46788888888888887543   57888999999998888755 3   57789999999999999999888765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.17  E-value=4.8e-07  Score=82.26  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=69.9

Q ss_pred             EEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591          164 VKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL  242 (286)
Q Consensus       164 ~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L  242 (286)
                      ++.+.+..+. ...+..++...+|..|++..|...     .++..+..+..||.|.+..|.+..+|+..+.|+ |..||+
T Consensus       145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDf  218 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDF  218 (722)
T ss_pred             ceeEEEecCccccCCcccccchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeec
Confidence            3444444444 234444444555555555555554     455666667777777777777777777777554 677777


Q ss_pred             ccccccccchhHhhCCCCccEEecCCCCccccchHHhh
Q 048591          243 NIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTL  280 (286)
Q Consensus       243 ~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~  280 (286)
                      ++|++..+|-.+ .+++.||+|-|.+|.++.-|..|.-
T Consensus       219 ScNkis~iPv~f-r~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  219 SCNKISYLPVDF-RKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             ccCceeecchhh-hhhhhheeeeeccCCCCCChHHHHh
Confidence            777777777777 7777777777777777776666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.16  E-value=4e-07  Score=82.70  Aligned_cols=114  Identities=21%  Similarity=0.175  Sum_probs=91.3

Q ss_pred             EEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591          164 VKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL  242 (286)
Q Consensus       164 ~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L  242 (286)
                      +..+.+..+... .+..+ -.--|+.|.+.+|+..     ..|..++..+.|..||.+.|.+..+|+.++.|..|+.|++
T Consensus       123 lt~l~ls~NqlS~lp~~l-C~lpLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  123 LTFLDLSSNQLSHLPDGL-CDLPLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             HHHhhhccchhhcCChhh-hcCcceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence            334444444432 23333 2345888999998887     4667778889999999999999999999999999999999


Q ss_pred             ccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          243 NIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       243 ~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      +.|++..+|+.+ +.| .|..||++.|++..||-.+.+|+.|.
T Consensus       197 rRn~l~~lp~El-~~L-pLi~lDfScNkis~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  197 RRNHLEDLPEEL-CSL-PLIRLDFSCNKISYLPVDFRKMRHLQ  237 (722)
T ss_pred             hhhhhhhCCHHH-hCC-ceeeeecccCceeecchhhhhhhhhe
Confidence            999999999999 855 58999999999999999999988764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.16  E-value=8.6e-07  Score=85.71  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=48.6

Q ss_pred             CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccE
Q 048591          184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYT  263 (286)
Q Consensus       184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~  263 (286)
                      ++|++|.+.+|....     +|..+.  ++|+.|++++|.+..+|..+.  ..|++|++++|.+..+|..+ .  .+|+.
T Consensus       325 ~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l-~--~sL~~  392 (754)
T PRK15370        325 PGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL-P--AALQI  392 (754)
T ss_pred             ccceeccccCCcccc-----CChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH-H--HHHHH
Confidence            345555555554432     222221  456666666666666665543  46666666666666666666 4  25666


Q ss_pred             EecCCCCccccchHHhh
Q 048591          264 LDMPFSYIDHTADEFTL  280 (286)
Q Consensus       264 L~l~~~~l~~lP~~i~~  280 (286)
                      |++++|++..+|..+.+
T Consensus       393 LdLs~N~L~~LP~sl~~  409 (754)
T PRK15370        393 MQASRNNLVRLPESLPH  409 (754)
T ss_pred             HhhccCCcccCchhHHH
Confidence            66666666666655444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=1.4e-06  Score=65.40  Aligned_cols=90  Identities=16%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCcc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY  262 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~  262 (286)
                      ..+|.+..+.+|.+..    .++..-.+++.+..|+|++|.++.+|..+..++.||.|+++.|.+...|.-| ..|.+|-
T Consensus        52 ~~el~~i~ls~N~fk~----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~  126 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK----FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLD  126 (177)
T ss_pred             CceEEEEecccchhhh----CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHH
Confidence            3445555566665543    2334444555677777777777777777777777788888777777777777 6677777


Q ss_pred             EEecCCCCccccchH
Q 048591          263 TLDMPFSYIDHTADE  277 (286)
Q Consensus       263 ~L~l~~~~l~~lP~~  277 (286)
                      .|+..+|.+.++|.+
T Consensus       127 ~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  127 MLDSPENARAEIDVD  141 (177)
T ss_pred             HhcCCCCccccCcHH
Confidence            777777776666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.03  E-value=3.5e-06  Score=73.61  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=75.7

Q ss_pred             CEEEEEEecCCCc------ccccCCCC-CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchh
Q 048591          163 NVKRINVFYKQSD------FVHFVDDD-SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSG  230 (286)
Q Consensus       163 ~~r~l~l~~~~~~------~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~  230 (286)
                      .++++.+..+...      ....+..+ ++|+.|.+.++.............+..++.|+.|++++|.+.     .++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            4788888776543      11222345 788899888888753211134456677788999999988876     34445


Q ss_pred             hccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591          231 IENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       231 i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~  272 (286)
                      +..+.+|++|++++|.+.     .++..+ ..+++|++|++++|.+.
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEEecCCCcCc
Confidence            556678999999988764     455666 77888999999998774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.02  E-value=3.1e-06  Score=76.51  Aligned_cols=91  Identities=23%  Similarity=0.156  Sum_probs=41.5

Q ss_pred             CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591          185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL  264 (286)
Q Consensus       185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L  264 (286)
                      +|+.|.+.++...     ..+..+..++.|+.|+++.|.+..+|...+.+..|+.|++++|.+..+|..+ +.+.+|++|
T Consensus       141 nL~~L~l~~N~i~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l  214 (394)
T COG4886         141 NLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEEL  214 (394)
T ss_pred             hcccccccccchh-----hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhh
Confidence            4444444444443     1223344444455555555554444444444444444555554444444444 444444444


Q ss_pred             ecCCCCccccchHHhhh
Q 048591          265 DMPFSYIDHTADEFTLH  281 (286)
Q Consensus       265 ~l~~~~l~~lP~~i~~L  281 (286)
                      .+.+|.+.+.|..+.++
T Consensus       215 ~~~~N~~~~~~~~~~~~  231 (394)
T COG4886         215 DLSNNSIIELLSSLSNL  231 (394)
T ss_pred             hhcCCcceecchhhhhc
Confidence            44444333333333333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.01  E-value=3.7e-06  Score=76.05  Aligned_cols=94  Identities=30%  Similarity=0.300  Sum_probs=81.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCC-ceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLE-FLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      ..+.+..|.+.++....     +++....+. +|+.|++++|.+..+|..++.+++|+.|++++|++..+|... +.+.+
T Consensus       114 ~~~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~  187 (394)
T COG4886         114 ELTNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSN  187 (394)
T ss_pred             cccceeEEecCCccccc-----CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhh
Confidence            55778899888888864     445566664 899999999999999989999999999999999999999998 89999


Q ss_pred             ccEEecCCCCccccchHHhhh
Q 048591          261 LYTLDMPFSYIDHTADEFTLH  281 (286)
Q Consensus       261 L~~L~l~~~~l~~lP~~i~~L  281 (286)
                      |+.|++++|++..+|..++.+
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~  208 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELL  208 (394)
T ss_pred             hhheeccCCccccCchhhhhh
Confidence            999999999999999865433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.92  E-value=1.1e-05  Score=70.57  Aligned_cols=111  Identities=15%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             CCCEEEEEEecCCCc--ccccCCCC---CCeeEEEEecCCCCCCCCchhhhhhcCC-CceEEEEeeCCCCc-----cCch
Q 048591          161 KKNVKRINVFYKQSD--FVHFVDDD---SHMHSLLYFTSKSDHLDPIDWGIICLML-EFLRVLDLGSLVLI-----QYPS  229 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~--~~~~~~~~---~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~-----~lp~  229 (286)
                      ..+++.+.+..+...  .+..+..+   ++|+.|.+.++.............+..+ ++|+.|++++|.++     .++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            457888888776643  22111122   5599999988876531101233455666 88999999999877     3455


Q ss_pred             hhccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591          230 GIENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       230 ~i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~  272 (286)
                      .+..+.+|++|++++|.+.     .++..+ ..+++|+.|++++|.+.
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccC
Confidence            5667788999999999876     456666 77789999999999764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.88  E-value=4e-06  Score=73.24  Aligned_cols=97  Identities=19%  Similarity=0.062  Sum_probs=74.5

Q ss_pred             CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeecc-ccccccchhHhhCCCCc
Q 048591          184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNI-PSLKILPSSLLSNLLNL  261 (286)
Q Consensus       184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~-~~i~~LP~~i~~~L~~L  261 (286)
                      +....+.+..|.+..    +++..|+.++.||.|||+.|.|+.+ |..+..|..|..|-+.+ |+|+.+|+..|+.|..|
T Consensus        67 ~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   67 PETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             CcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            455667788888776    6778899999999999999998854 57788888887777766 77999999888899999


Q ss_pred             cEEecCCCCccccc-hHHhhhhcc
Q 048591          262 YTLDMPFSYIDHTA-DEFTLHARN  284 (286)
Q Consensus       262 ~~L~l~~~~l~~lP-~~i~~L~~~  284 (286)
                      |.|.+.-|++.-++ ..+..|+.|
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l  166 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSL  166 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhc
Confidence            98888888775444 345555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.86  E-value=6.1e-06  Score=62.05  Aligned_cols=79  Identities=14%  Similarity=0.137  Sum_probs=69.1

Q ss_pred             hhhhcCCCceEEEEeeCCCCccCchhhcccc-ccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591          205 GIICLMLEFLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       205 ~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      ...+.....|...+|++|.++.+|+.+.... -++.|++.+|.|..+|..+ ..++.|+.|+++.|.+...|.-|..|.+
T Consensus        46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~  124 (177)
T KOG4579|consen   46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIK  124 (177)
T ss_pred             HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHh
Confidence            3456677788999999999999998887654 7999999999999999998 9999999999999999888888777655


Q ss_pred             c
Q 048591          284 N  284 (286)
Q Consensus       284 ~  284 (286)
                      +
T Consensus       125 l  125 (177)
T KOG4579|consen  125 L  125 (177)
T ss_pred             H
Confidence            4

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=7e-05  Score=72.06  Aligned_cols=85  Identities=25%  Similarity=0.264  Sum_probs=63.7

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccc--hhHhhCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILP--SSLLSNLL  259 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP--~~i~~~L~  259 (286)
                      .+|.|++|.+.+-.....   .+...+.++++|+.||+++++++.+ ..|++|++|+.|.+++-.++.-+  ..+ .+|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~  220 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLK  220 (699)
T ss_pred             hCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hccc
Confidence            688999998888766432   3556778889999999999988877 67888888888888776665433  245 6788


Q ss_pred             CccEEecCCCCc
Q 048591          260 NLYTLDMPFSYI  271 (286)
Q Consensus       260 ~L~~L~l~~~~l  271 (286)
                      +|+.||++....
T Consensus       221 ~L~vLDIS~~~~  232 (699)
T KOG3665|consen  221 KLRVLDISRDKN  232 (699)
T ss_pred             CCCeeecccccc
Confidence            888888877643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.35  E-value=2.7e-05  Score=68.21  Aligned_cols=113  Identities=16%  Similarity=0.032  Sum_probs=86.7

Q ss_pred             CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeC-CCCccCc-hhhcccc
Q 048591          160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGS-LVLIQYP-SGIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~l~~lp-~~i~~L~  235 (286)
                      .+.....+.+..|... +| ..++.+++||.|++++|.+..    +-|..|..++.|..|-+.+ |.|+.+| ..++.|.
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~----I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF----IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhh----cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            4666777888887755 33 345688999999999998876    6678888888887776666 7799988 4577888


Q ss_pred             ccceeeeccccccccchhHhhCCCCccEEecCCCCccccch
Q 048591          236 LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD  276 (286)
Q Consensus       236 ~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~  276 (286)
                      .|+-|.+.-|.+..++...|..|++|..|.+-+|.++.++.
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~  181 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK  181 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence            88888888888877777666788888888888877766665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.34  E-value=0.00038  Score=62.43  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=58.6

Q ss_pred             CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCC-CCccCchhhccccccceee
Q 048591          163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSL-VLIQYPSGIENLFLLRYLK  241 (286)
Q Consensus       163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~~lp~~i~~L~~L~~L~  241 (286)
                      ..++|.+..+.....+.  -.++|++|.+.++....    .+|..+  .++|+.|++++| .+..+|.+      |+.|+
T Consensus        53 ~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLt----sLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV--LPNELTEITIENCNNLT----TLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             CCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcc----cCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence            34566666654322111  23467888777654422    233333  246778888877 47677754      44444


Q ss_pred             ecccc---ccccchhHhhCCC------------------CccEEecCCCCcc----ccchHHhhh
Q 048591          242 LNIPS---LKILPSSLLSNLL------------------NLYTLDMPFSYID----HTADEFTLH  281 (286)
Q Consensus       242 L~~~~---i~~LP~~i~~~L~------------------~L~~L~l~~~~l~----~lP~~i~~L  281 (286)
                      ++++.   +..||+++ ..|.                  +|++|++.+|...    .+|.++..|
T Consensus       119 L~~n~~~~L~~LPssL-k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L  182 (426)
T PRK15386        119 IKGSATDSIKNVPNGL-TSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSI  182 (426)
T ss_pred             eCCCCCcccccCcchH-hheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEE
Confidence            55443   56777777 6663                  6788888887542    355544433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.26  E-value=0.00013  Score=66.57  Aligned_cols=104  Identities=20%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             CCCEEEEEEecCCCccccc-CCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          161 KKNVKRINVFYKQSDFVHF-VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      ...+..+.+..+...-... +..+++|+.|.+..+.+...      ..+..+..|+.|++++|.++.++ .+..+..|+.
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKL  166 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheeccccccccc------cchhhccchhhheeccCcchhcc-CCccchhhhc
Confidence            4455666666666544444 44566777777766666432      23445555667777777666554 3444666777


Q ss_pred             eeeccccccccchh-HhhCCCCccEEecCCCCcc
Q 048591          240 LKLNIPSLKILPSS-LLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       240 L~L~~~~i~~LP~~-i~~~L~~L~~L~l~~~~l~  272 (286)
                      +++++|++..++.. . ..+.+|+.+++.+|.+.
T Consensus       167 l~l~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDEL-SELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCCcchhhhhhhhhh-hhccchHHHhccCCchh
Confidence            77777766666553 4 56666676777666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.19  E-value=0.00018  Score=69.32  Aligned_cols=98  Identities=19%  Similarity=0.058  Sum_probs=70.8

Q ss_pred             CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc--cCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .+|+.|++.|...-...  .+...-.-+|.|+.|.+.+-.+.  ++-.-..++++|+.||+|+++++.+ ..| ++|+||
T Consensus       122 ~nL~~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhcc--HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccH
Confidence            46677777664432111  44455567899999999997754  3344455788999999999999999 889 999999


Q ss_pred             cEEecCCCCccccc--hHHhhhhccC
Q 048591          262 YTLDMPFSYIDHTA--DEFTLHARNT  285 (286)
Q Consensus       262 ~~L~l~~~~l~~lP--~~i~~L~~~~  285 (286)
                      |+|.+++=.+..-+  .++.+|++|.
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCC
Confidence            99999886664322  3566777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.00011  Score=65.29  Aligned_cols=89  Identities=18%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhccccccceeeeccccccc--cchh----
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLRYLKLNIPSLKI--LPSS----  253 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~~--LP~~----  253 (286)
                      .+|+|..|.+..|....    ........++.|+.|||++|.+..++  ..++.++.|+.|+++.|+|.+  +|+.    
T Consensus       220 ~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             hCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence            45566666665553211    11223344566778888888877666  667888888888888888763  3443    


Q ss_pred             -HhhCCCCccEEecCCCCccccc
Q 048591          254 -LLSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       254 -i~~~L~~L~~L~l~~~~l~~lP  275 (286)
                       . ..+++|++|++..|++.+.|
T Consensus       296 kt-~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  296 KT-HTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             hh-cccccceeeecccCcccccc
Confidence             2 36788899999988886555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.10  E-value=0.00021  Score=36.16  Aligned_cols=18  Identities=44%  Similarity=0.670  Sum_probs=8.7

Q ss_pred             cceeeeccccccccchhH
Q 048591          237 LRYLKLNIPSLKILPSSL  254 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i  254 (286)
                      |++|++++|+++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444555555444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.08  E-value=0.00017  Score=36.49  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.1

Q ss_pred             CccEEecCCCCccccchHHhhh
Q 048591          260 NLYTLDMPFSYIDHTADEFTLH  281 (286)
Q Consensus       260 ~L~~L~l~~~~l~~lP~~i~~L  281 (286)
                      +|++||+++|++.++|+++++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            6899999999999999987764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.07  E-value=0.00062  Score=54.67  Aligned_cols=102  Identities=18%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhcccccccee
Q 048591          163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLRYL  240 (286)
Q Consensus       163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~~L  240 (286)
                      ...-+.+..+.......+..++.|.+|.+.+|.+..    +-|..-..+++|..|.|.+|++.++-  ..+..++.|+||
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~----I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITR----IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCccee----eccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            334455555554444455588999999999999876    33444456677999999999987543  335567889999


Q ss_pred             eeccccccccch----hHhhCCCCccEEecCCC
Q 048591          241 KLNIPSLKILPS----SLLSNLLNLYTLDMPFS  269 (286)
Q Consensus       241 ~L~~~~i~~LP~----~i~~~L~~L~~L~l~~~  269 (286)
                      .+-+|.++..+.    -+ .++++|++||...-
T Consensus       119 tll~Npv~~k~~YR~yvl-~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVL-YKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEE-EecCcceEeehhhh
Confidence            999998775544    25 78999999998764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.02  E-value=0.00078  Score=58.31  Aligned_cols=89  Identities=17%  Similarity=0.168  Sum_probs=36.5

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cchhh-ccccccceeeecccccc-----cc
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPSGI-ENLFLLRYLKLNIPSLK-----IL  250 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i-~~L~~L~~L~L~~~~i~-----~L  250 (286)
                      .+++|+.|++..|-+.......+...++.+++||.|.++.|.++.     +-..+ ...+.|+.|.+.+|.|+     .+
T Consensus       211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l  290 (382)
T KOG1909|consen  211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL  290 (382)
T ss_pred             hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence            444444444444444322222233344444444444444444331     11111 11334445555544433     22


Q ss_pred             chhHhhCCCCccEEecCCCCc
Q 048591          251 PSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       251 P~~i~~~L~~L~~L~l~~~~l  271 (286)
                      -..+ ...+.|..|+|++|.+
T Consensus       291 a~~~-~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  291 AACM-AEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHH-hcchhhHHhcCCcccc
Confidence            3333 4445555555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00022  Score=63.40  Aligned_cols=86  Identities=22%  Similarity=0.141  Sum_probs=54.9

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-C--ccCchhhccccccceeeeccccccccc--hhHhh
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-L--IQYPSGIENLFLLRYLKLNIPSLKILP--SSLLS  256 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l--~~lp~~i~~L~~L~~L~L~~~~i~~LP--~~i~~  256 (286)
                      .+++|+.|.+.+|.....   ........+|+|.+|+|++|. +  +..+.  .-+..|+.|||++|++..+|  .-+ +
T Consensus       195 ~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-~  268 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-G  268 (505)
T ss_pred             hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-c
Confidence            345555555555555321   344555667777777777773 2  23332  23567888888888877666  456 7


Q ss_pred             CCCCccEEecCCCCccc
Q 048591          257 NLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       257 ~L~~L~~L~l~~~~l~~  273 (286)
                      .|+.|..|+++.|.+.+
T Consensus       269 ~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             cccchhhhhccccCcch
Confidence            88888888888887643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.90  E-value=0.00011  Score=69.10  Aligned_cols=103  Identities=21%  Similarity=0.171  Sum_probs=74.5

Q ss_pred             CCCEEEEEEecCCCccc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          161 KKNVKRINVFYKQSDFV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      +.++..+++..|..... .++.-++.+++|++..|+...      -..+..++.|+.|||+.|.+..+|.--..-.+|..
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~  236 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQL  236 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhhhhee
Confidence            34455555555553322 233346788999999998853      24788899999999999999988842212234999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      |.+++|.+++|- .| .+|++|+.||++.|-+
T Consensus       237 L~lrnN~l~tL~-gi-e~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  237 LNLRNNALTTLR-GI-ENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             eeecccHHHhhh-hH-HhhhhhhccchhHhhh
Confidence            999999998884 47 8999999999999855

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.86  E-value=0.00036  Score=63.61  Aligned_cols=89  Identities=22%  Similarity=0.301  Sum_probs=70.4

Q ss_pred             CCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCC
Q 048591          180 VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLL  259 (286)
Q Consensus       180 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~  259 (286)
                      +..+.++..+.+.++.+...     ...+..+++|++|++++|.|+.+. .+..+..|+.|++++|.|..++. + ..+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~-~~l~  162 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-L-ESLK  162 (414)
T ss_pred             cccccceeeeeccccchhhc-----ccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-C-ccch
Confidence            44678888888888888642     233778899999999999988775 57778889999999999888765 3 5688


Q ss_pred             CccEEecCCCCccccch
Q 048591          260 NLYTLDMPFSYIDHTAD  276 (286)
Q Consensus       260 ~L~~L~l~~~~l~~lP~  276 (286)
                      +|+.+++.+|.+..++.
T Consensus       163 ~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hhhcccCCcchhhhhhh
Confidence            99999999998876655

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.82  E-value=0.00088  Score=60.13  Aligned_cols=84  Identities=17%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccceeeeccc-cccccchhHhhCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIP-SLKILPSSLLSNLL  259 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~~L~L~~~-~i~~LP~~i~~~L~  259 (286)
                      .+.+++.|.+.++....     +|.   -..+|+.|.+++|. ++.+|..+.  .+|++|++++| .+..+|.++ ..  
T Consensus        50 ~~~~l~~L~Is~c~L~s-----LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL-e~--  116 (426)
T PRK15386         50 EARASGRLYIKDCDIES-----LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESV-RS--  116 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-----cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccccc-ce--
Confidence            57889999999886653     331   22359999999866 788887663  58999999998 688888776 43  


Q ss_pred             CccEEecCCC---CccccchHHhhhh
Q 048591          260 NLYTLDMPFS---YIDHTADEFTLHA  282 (286)
Q Consensus       260 ~L~~L~l~~~---~l~~lP~~i~~L~  282 (286)
                          |++..+   .+..+|+++..|.
T Consensus       117 ----L~L~~n~~~~L~~LPssLk~L~  138 (426)
T PRK15386        117 ----LEIKGSATDSIKNVPNGLTSLS  138 (426)
T ss_pred             ----EEeCCCCCcccccCcchHhhee
Confidence                445544   3688999888774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.65  E-value=0.00019  Score=67.73  Aligned_cols=91  Identities=13%  Similarity=0.089  Sum_probs=67.1

Q ss_pred             eeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEe
Q 048591          186 MHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLD  265 (286)
Q Consensus       186 Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~  265 (286)
                      |.+..+..|...     .+...+.-++.|+.|+|+.|++..+- .+..+.+|+.|||++|.+..+|.--+..+ .|+.|+
T Consensus       166 L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  166 LATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             HhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeee
Confidence            444444444443     45567778888999999999988776 78889999999999999988887331333 499999


Q ss_pred             cCCCCccccchHHhhhhcc
Q 048591          266 MPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       266 l~~~~l~~lP~~i~~L~~~  284 (286)
                      +++|.++++- +|.+|..|
T Consensus       239 lrnN~l~tL~-gie~LksL  256 (1096)
T KOG1859|consen  239 LRNNALTTLR-GIENLKSL  256 (1096)
T ss_pred             ecccHHHhhh-hHHhhhhh
Confidence            9999887763 56666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.00085  Score=57.07  Aligned_cols=87  Identities=24%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhh-ccccccceeeeccccc--cccchhHhhCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGI-ENLFLLRYLKLNIPSL--KILPSSLLSNL  258 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~i--~~LP~~i~~~L  258 (286)
                      ....++.+++.+|.+...+  .+...+.++|.|++|+++.|++...-... -.+++|+.|-|.|+.+  +.....+ ..+
T Consensus        69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~l  145 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDL  145 (418)
T ss_pred             HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcc
Confidence            5677888888888876544  56677889999999999998865322222 3567889998888865  3555566 777


Q ss_pred             CCccEEecCCCCc
Q 048591          259 LNLYTLDMPFSYI  271 (286)
Q Consensus       259 ~~L~~L~l~~~~l  271 (286)
                      +.++.|.++.|++
T Consensus       146 P~vtelHmS~N~~  158 (418)
T KOG2982|consen  146 PKVTELHMSDNSL  158 (418)
T ss_pred             hhhhhhhhccchh
Confidence            7777777777743

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0017  Score=54.10  Aligned_cols=111  Identities=14%  Similarity=0.036  Sum_probs=63.8

Q ss_pred             CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhcccccccee
Q 048591          163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLRYL  240 (286)
Q Consensus       163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~~L  240 (286)
                      .+..+++.+........+..+++|+.|.++.+......  .+......+++|++|++++|.++.+.  .....+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            34444444333222223337788888888877432211  33344456688888888888866311  234466777788


Q ss_pred             eecccccccc---chhHhhCCCCccEEecCCCCccccc
Q 048591          241 KLNIPSLKIL---PSSLLSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       241 ~L~~~~i~~L---P~~i~~~L~~L~~L~l~~~~l~~lP  275 (286)
                      ++.+|....+   -..+|.-+++|.+||-....-.+.|
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~  159 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP  159 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence            8887764433   2345456778887776555434444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.0024  Score=54.42  Aligned_cols=92  Identities=23%  Similarity=0.189  Sum_probs=62.5

Q ss_pred             EEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc---hhhccccccceeeecccc----ccccchhHhhCCCC
Q 048591          188 SLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP---SGIENLFLLRYLKLNIPS----LKILPSSLLSNLLN  260 (286)
Q Consensus       188 ~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp---~~i~~L~~L~~L~L~~~~----i~~LP~~i~~~L~~  260 (286)
                      .+.+.++.+....  ....+=.....++.|||.+|.++...   .-..+|++|++|+++.|.    |..+|.    .+.+
T Consensus        49 llvln~~~id~~g--d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~----p~~n  122 (418)
T KOG2982|consen   49 LLVLNGSIIDNEG--DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL----PLKN  122 (418)
T ss_pred             hheecCCCCCcch--hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc----cccc
Confidence            4445555444322  33344456778999999999988543   344579999999999986    456663    3468


Q ss_pred             ccEEecCCCCc--cccchHHhhhhccC
Q 048591          261 LYTLDMPFSYI--DHTADEFTLHARNT  285 (286)
Q Consensus       261 L~~L~l~~~~l--~~lP~~i~~L~~~~  285 (286)
                      |++|-|.++.+  ...-..+..+|+.|
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            99999999876  44555566666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.23  E-value=0.0027  Score=29.81  Aligned_cols=16  Identities=31%  Similarity=0.376  Sum_probs=5.9

Q ss_pred             CccEEecCCCCccccc
Q 048591          260 NLYTLDMPFSYIDHTA  275 (286)
Q Consensus       260 ~L~~L~l~~~~l~~lP  275 (286)
                      +|+.|++++|++.++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4455555555544444

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0021  Score=53.60  Aligned_cols=84  Identities=20%  Similarity=0.098  Sum_probs=59.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCC--CCc-cCchhhccccccceeeecccccc---ccchhHh
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSL--VLI-QYPSGIENLFLLRYLKLNIPSLK---ILPSSLL  255 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~--~l~-~lp~~i~~L~~L~~L~L~~~~i~---~LP~~i~  255 (286)
                      ...+|..+.+.+...+.      -..+..+++|+.|+++.|  ++. .++...-.+++|++|++++|+|+   ++++ . 
T Consensus        41 ~~~~le~ls~~n~gltt------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l-  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-L-  112 (260)
T ss_pred             cccchhhhhhhccceee------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-h-
Confidence            34445555555555432      245678889999999999  433 56655666699999999999876   3333 4 


Q ss_pred             hCCCCccEEecCCCCccc
Q 048591          256 SNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       256 ~~L~~L~~L~l~~~~l~~  273 (286)
                      .++.+|..|++.+|....
T Consensus       113 ~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhcchhhhhcccCCccc
Confidence            678889999999996533

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.10  E-value=0.0031  Score=29.60  Aligned_cols=16  Identities=44%  Similarity=0.484  Sum_probs=7.5

Q ss_pred             ccceeeeccccccccc
Q 048591          236 LLRYLKLNIPSLKILP  251 (286)
Q Consensus       236 ~L~~L~L~~~~i~~LP  251 (286)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666666655

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.90  E-value=0.01  Score=51.63  Aligned_cols=112  Identities=14%  Similarity=0.067  Sum_probs=82.6

Q ss_pred             CCCCEEEEEEecCCCc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCc
Q 048591          160 SKKNVKRINVFYKQSD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYP  228 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp  228 (286)
                      .+.++|.+....|...      ....+...+.|+.+.+..+.+...........+..+++|++|||..|.++     .+-
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            5677888888877633      12233356789999998888765433356678899999999999999976     344


Q ss_pred             hhhccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCc
Q 048591          229 SGIENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       229 ~~i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      ..++.+++|+.|+++.|.++     .+-..+-...++|++|++.+|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            55677889999999999775     34444423468999999999987

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.48  E-value=0.013  Score=30.65  Aligned_cols=20  Identities=20%  Similarity=0.167  Sum_probs=11.0

Q ss_pred             CCccEEecCCCCccccchHH
Q 048591          259 LNLYTLDMPFSYIDHTADEF  278 (286)
Q Consensus       259 ~~L~~L~l~~~~l~~lP~~i  278 (286)
                      ++|++|+|.+|++..+|.++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45555555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.48  E-value=0.013  Score=30.65  Aligned_cols=20  Identities=20%  Similarity=0.167  Sum_probs=11.0

Q ss_pred             CCccEEecCCCCccccchHH
Q 048591          259 LNLYTLDMPFSYIDHTADEF  278 (286)
Q Consensus       259 ~~L~~L~l~~~~l~~lP~~i  278 (286)
                      ++|++|+|.+|++..+|.++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45555555555555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.0028  Score=53.49  Aligned_cols=81  Identities=23%  Similarity=0.206  Sum_probs=63.7

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccch--hHhhCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPS--SLLSNLL  259 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~--~i~~~L~  259 (286)
                      ++.+++.|.+.|+....      ..+..+|+.|+||.|+-|.|+++- .+...++|+.|.|+.|.|..+-+  -+ .+|+
T Consensus        17 dl~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YL-knlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYL-KNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHH-hcCc
Confidence            45677778888887753      356788999999999999988774 57788899999999998876644  34 7888


Q ss_pred             CccEEecCCCC
Q 048591          260 NLYTLDMPFSY  270 (286)
Q Consensus       260 ~L~~L~l~~~~  270 (286)
                      +|++|-|..|.
T Consensus        89 sLr~LWL~ENP   99 (388)
T KOG2123|consen   89 SLRTLWLDENP   99 (388)
T ss_pred             hhhhHhhccCC
Confidence            89999888773

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.24  E-value=0.028  Score=45.37  Aligned_cols=84  Identities=15%  Similarity=0.066  Sum_probs=61.6

Q ss_pred             CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccc-cccceeeeccccccccch--hHhhCCCC
Q 048591          184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENL-FLLRYLKLNIPSLKILPS--SLLSNLLN  260 (286)
Q Consensus       184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L-~~L~~L~L~~~~i~~LP~--~i~~~L~~  260 (286)
                      .+...+++.++...      -...|..++.|..|.+.+|.|..+-+.++.+ ++|..|.|.+|+|.++-+  .+ ..++.
T Consensus        42 d~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~  114 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPK  114 (233)
T ss_pred             cccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCc
Confidence            35566777777663      2356788899999999999998887777764 569999999998776533  23 56788


Q ss_pred             ccEEecCCCCcccc
Q 048591          261 LYTLDMPFSYIDHT  274 (286)
Q Consensus       261 L~~L~l~~~~l~~l  274 (286)
                      |++|.+-+|.+...
T Consensus       115 L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHK  128 (233)
T ss_pred             cceeeecCCchhcc
Confidence            88888888865443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.94  E-value=0.018  Score=30.11  Aligned_cols=21  Identities=38%  Similarity=0.360  Sum_probs=17.5

Q ss_pred             ccccceeeeccccccccchhH
Q 048591          234 LFLLRYLKLNIPSLKILPSSL  254 (286)
Q Consensus       234 L~~L~~L~L~~~~i~~LP~~i  254 (286)
                      |++|++|+|++|.|+.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888899988888888876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.94  E-value=0.018  Score=30.11  Aligned_cols=21  Identities=38%  Similarity=0.360  Sum_probs=17.5

Q ss_pred             ccccceeeeccccccccchhH
Q 048591          234 LFLLRYLKLNIPSLKILPSSL  254 (286)
Q Consensus       234 L~~L~~L~L~~~~i~~LP~~i  254 (286)
                      |++|++|+|++|.|+.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888899988888888876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.93  E-value=0.0012  Score=54.29  Aligned_cols=84  Identities=12%  Similarity=-0.049  Sum_probs=70.9

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .......|++..+...     .....|+.+..|..||++.+.+..+|...+.+..++.+++..|..+.+|.+. ++++++
T Consensus        40 ~~kr~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~  113 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHP  113 (326)
T ss_pred             ccceeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCc
Confidence            5667777777776654     3445677777888899999999999999999999999999999999999999 999999


Q ss_pred             cEEecCCCCc
Q 048591          262 YTLDMPFSYI  271 (286)
Q Consensus       262 ~~L~l~~~~l  271 (286)
                      +++++.+|.+
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            9999998865

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.78  E-value=0.00097  Score=54.81  Aligned_cols=43  Identities=5%  Similarity=-0.311  Sum_probs=22.3

Q ss_pred             hhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeecccc
Q 048591          204 WGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPS  246 (286)
Q Consensus       204 ~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~  246 (286)
                      .|..+...+.++.+++..|..+..|.+.+.++|++|+++.+|.
T Consensus        80 ~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   80 LPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             ChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            3444445555555555555555555555555555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.11  E-value=0.022  Score=48.76  Aligned_cols=41  Identities=15%  Similarity=0.045  Sum_probs=23.2

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVL  224 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l  224 (286)
                      +-.+|+.|++.+++.-...  ...-.+.++..|..|+++.|.+
T Consensus       232 kN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             ccccceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhc
Confidence            5556666666665543322  3444556666666666666653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.76  E-value=0.83  Score=33.76  Aligned_cols=106  Identities=14%  Similarity=0.110  Sum_probs=55.2

Q ss_pred             CEEEEEEecCCCcccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccccee
Q 048591          163 NVKRINVFYKQSDFVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLRYL  240 (286)
Q Consensus       163 ~~r~l~l~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~~L  240 (286)
                      .++.+.+......+.+ .+..+++|+.+.+.+. ...    .....|..++.|+.+.+.+ .+..++. .+....+|+.+
T Consensus        13 ~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~----i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   13 NLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTS----IGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T--EEEETST--EE-TTTTTT-TT-SEEEESST-TSC----E-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCEEEECCCeeEeChhhccccccccccccccc-ccc----cceeeeecccccccccccc-ccccccccccccccccccc
Confidence            4556666543332222 3336678888888664 332    3446788888899999966 5554553 45558889999


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE  277 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~  277 (286)
                      .+..+ +..++...|.+. +|+.+.+.. .+..++..
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~  120 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEEN  120 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCc
Confidence            88765 778877776776 899888876 44555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.46  E-value=0.35  Score=35.84  Aligned_cols=87  Identities=17%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      ++++|+.+.+.. ....    .....|..+..|+.+.+.++ +..++ ..+.....|+++.+.. .+..++...|..+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~----I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKK----IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             T-TT--EEEETS-T--E----E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             CCCCCCEEEECC-CeeE----eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            677888888764 2322    44567888889999999875 77666 3466676899999976 677788877577999


Q ss_pred             ccEEecCCCCccccch
Q 048591          261 LYTLDMPFSYIDHTAD  276 (286)
Q Consensus       261 L~~L~l~~~~l~~lP~  276 (286)
                      |+.+++..+ +..++.
T Consensus        83 l~~i~~~~~-~~~i~~   97 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGS   97 (129)
T ss_dssp             ECEEEETTT--BEEHT
T ss_pred             ccccccCcc-ccEEch
Confidence            999999764 444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.70  E-value=0.023  Score=48.18  Aligned_cols=73  Identities=19%  Similarity=0.124  Sum_probs=56.5

Q ss_pred             CCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccch--HHhhhhccC
Q 048591          210 MLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD--EFTLHARNT  285 (286)
Q Consensus       210 ~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~--~i~~L~~~~  285 (286)
                      .+.+.+.|+..||.+..+. -..+++.|+.|.|+-|+|+.|-+ + ..+++|+.|.|+.|.|..+-+  -+.+|++|+
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-L-QRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh-H-HHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            3556778889999988653 34478999999999999999955 5 789999999999998866643  345555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=90.35  E-value=0.072  Score=45.71  Aligned_cols=62  Identities=23%  Similarity=0.094  Sum_probs=45.2

Q ss_pred             hhhcCCCceEEEEeeCCC-Cc-cCchhhccccccceeeeccccccccch---hHhhCCCCccEEecCCC
Q 048591          206 IICLMLEFLRVLDLGSLV-LI-QYPSGIENLFLLRYLKLNIPSLKILPS---SLLSNLLNLYTLDMPFS  269 (286)
Q Consensus       206 ~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~~L~~L~~L~L~~~~i~~LP~---~i~~~L~~L~~L~l~~~  269 (286)
                      .....+++|..|||+.|. ++ .+-..+.+++.|+||+++.|..- .|.   .+ +..+.|.+||+.+|
T Consensus       307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l-~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLEL-NSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeee-ccCcceEEEEeccc
Confidence            344678899999999887 55 33356778889999999988621 222   23 67788999999887

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.12  E-value=0.9  Score=45.71  Aligned_cols=119  Identities=13%  Similarity=0.029  Sum_probs=71.6

Q ss_pred             CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccCccccccchhhHHhh-hccCCChhhHHHHhhhccCCCCceee
Q 048591            2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTV-ISCKLPFHLKLCFLYLSVFPAHLEIS   80 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~-Sy~~L~~~~k~cFl~~a~Fp~~~~i~   80 (286)
                      +.|+|.|+++..++..++.....-..   ....+.. ..    ...+...+.- -++.||++.+..++..|+++.   ++
T Consensus       213 ~~t~Gwp~~l~l~~~~~~~~~~~~~~---~~~~~~~-~~----~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~  281 (903)
T PRK04841        213 DDVEGWATALQLIALSARQNNSSLHD---SARRLAG-IN----ASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MN  281 (903)
T ss_pred             HHhCChHHHHHHHHHHHhhCCCchhh---hhHhhcC-CC----chhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CC
Confidence            46899999999999877652110011   1111100 00    0235554433 378999999999999999862   33


Q ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhh
Q 048591           81 TRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVA  143 (286)
Q Consensus        81 ~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~  143 (286)
                      . .+...     +..   .+.+...++.|.+.+++...... .+  ..|+.|++++++.+...
T Consensus       282 ~-~l~~~-----l~~---~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        282 D-ALIVR-----VTG---EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC  332 (903)
T ss_pred             H-HHHHH-----HcC---CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence            2 22221     111   12356788999999987532211 11  46788999999988764

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.23  E-value=0.2  Score=26.19  Aligned_cols=17  Identities=29%  Similarity=0.393  Sum_probs=9.6

Q ss_pred             ccceeeeccccccccch
Q 048591          236 LLRYLKLNIPSLKILPS  252 (286)
Q Consensus       236 ~L~~L~L~~~~i~~LP~  252 (286)
                      +|++|++++|++++||+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45555555555555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.87  E-value=0.33  Score=24.62  Aligned_cols=13  Identities=46%  Similarity=0.445  Sum_probs=7.6

Q ss_pred             CCccEEecCCCCc
Q 048591          259 LNLYTLDMPFSYI  271 (286)
Q Consensus       259 ~~L~~L~l~~~~l  271 (286)
                      ++|++|+|++|++
T Consensus         2 ~~L~~L~l~~n~i   14 (24)
T PF13516_consen    2 PNLETLDLSNNQI   14 (24)
T ss_dssp             TT-SEEE-TSSBE
T ss_pred             CCCCEEEccCCcC
Confidence            5667777777766

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.06  E-value=0.78  Score=24.02  Aligned_cols=14  Identities=29%  Similarity=0.221  Sum_probs=6.8

Q ss_pred             cccceeeecccccc
Q 048591          235 FLLRYLKLNIPSLK  248 (286)
Q Consensus       235 ~~L~~L~L~~~~i~  248 (286)
                      ++|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	3e-14
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKAN 118
           L   +K  +  LS+    +++ T+ L  LW  E           E  L++ +N+  +  +
Sbjct: 375 LREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE-------VEDILQEFVNKSLLFCD 427

Query: 119 KRRTGGTIHTCSI 131
           +    G      +
Sbjct: 428 RN---GKSFRYYL 437

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 66.6 bits (162), Expect = 1e-12
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 59  LPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDN--SEATAEKYLEQLINRGFVK 116
           L    +    +  V P  ++I  +    +   +    +    +      L++L  RG + 
Sbjct: 385 LSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALL 444

Query: 117 ANKRRTGGTIHTCSI 131
           + KR    T     I
Sbjct: 445 SGKRMPVLTFKIDHI 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 3e-10
 Identities = 50/291 (17%), Positives = 84/291 (28%), Gaps = 82/291 (28%)

Query: 6   NVRLDIVP----TGGPLRV------------TYQGWPFLILYHGSISLEQNIEEAIEGPM 49
           + R   +P    T  P R+            T+  W     +     L   IE ++    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW----KHVNCDKLTTIIESSLN--- 364

Query: 50  GRLTVISCKLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQL 109
             L       P   +  F  LSVFP    I T  L  +W       D  ++     + +L
Sbjct: 365 -VLE------PAEYRKMFDRLSVFPPSAHIPTILLSLIW------FDVIKSDVMVVVNKL 411

Query: 110 INRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFIFLSFMVSERKS--KKNVKRI 167
                V+   + +  +I +  +  + +                  +    +  +  V   
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVK------------------LENEYALHRSIVDHY 453

Query: 168 NVF--YKQSDFVHFVDDDSHMHSLLYFTSK-SDHLDPIDWGIICLMLEFLRV-LDLGSL- 222
           N+   +   D +    D        YF S    HL  I+      M  F  V LD   L 
Sbjct: 454 NIPKTFDSDDLIPPYLDQ-------YFYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLE 504

Query: 223 -------VLIQYPSGIENLFL-----LRYLKLNIPSLKILPSSLLSNLLNL 261
                          I N          Y+  N P  + L +++L  L  +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 209 LMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDM 266
                   L+L S+ L Q+P     L  L+++ ++   L  LP + +     L TL +
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTL 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.74
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.68
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.35
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.33
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.32
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.29
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.26
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.25
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.23
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.21
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.2
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.2
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.19
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.1
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.1
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.1
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.03
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.03
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.02
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.02
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.01
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.0
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.99
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.99
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.97
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.96
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.68
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.97
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.94
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.18
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.95
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.59
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.33
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.58

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.86  E-value=3.8e-23  Score=192.84  Aligned_cols=131  Identities=17%  Similarity=0.139  Sum_probs=104.1

Q ss_pred             CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccCccccccchhhHHhhhccCCChhhHHHHh-----------hh
Q 048591            2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFL-----------YL   70 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~k~cFl-----------~~   70 (286)
                      ++|+|+||||+++|+.|+..  .|+.. +.+.+..+..    ...+|..+|++||++||+++|.||+           ||
T Consensus       324 ~~c~GlPLAl~~~g~~l~~~--~w~~~-~~l~~~l~~~----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~l  396 (549)
T 2a5y_B          324 ELSSGNPATLMMFFKSCEPK--TFEKM-AQLNNKLESR----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFA  396 (549)
T ss_dssp             HHHTTCHHHHHHHHTTCCSS--SHHHH-HHHHHHHHHH----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGG
T ss_pred             HHhCCChHHHHHHHHHhccc--hHHHH-HHhHHHhhcc----cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhhe
Confidence            47999999999999999763  46551 2333332221    1256999999999999999999999           99


Q ss_pred             ccCCCCceeeHHHHHHHHHHc--cCCCC-----CHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhh
Q 048591           71 SVFPAHLEISTRQLYHLWIAE--GFIPD-----NSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVA  143 (286)
Q Consensus        71 a~Fp~~~~i~~~~li~~w~a~--g~i~~-----~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~  143 (286)
                      |+||+++.|+    +++|+|+  ||+..     +.+++++ |+++|+++||++....+   ....|+|||+||++|+.++
T Consensus       397 s~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~  468 (549)
T 2a5y_B          397 VVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVV  468 (549)
T ss_dssp             GSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTS
T ss_pred             eeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHH
Confidence            9999999999    8999999  99965     4788888 99999999999987643   3367999999999999988


Q ss_pred             cccC
Q 048591          144 SEVE  147 (286)
Q Consensus       144 ~~~~  147 (286)
                      .+++
T Consensus       469 ~~~~  472 (549)
T 2a5y_B          469 DAQT  472 (549)
T ss_dssp             CTHH
T ss_pred             HHHH
Confidence            7764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.74  E-value=2.6e-18  Score=173.73  Aligned_cols=135  Identities=16%  Similarity=0.195  Sum_probs=108.7

Q ss_pred             CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccC-c--cccccchhhHHhhhccCCChhhHHHHhhhccCCCCce
Q 048591            2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQN-I--EEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLE   78 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~-~--~~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~   78 (286)
                      ++|+|+||||+++|+.|+.....|+.+++.+....+..- .  ....+.+..++.+||+.||+++|.||+|||+||+++.
T Consensus       315 ~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~  394 (1249)
T 3sfz_A          315 KECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVK  394 (1249)
T ss_dssp             HHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCC
T ss_pred             HHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCe
Confidence            479999999999999998844689984443333222211 1  1122469999999999999999999999999999999


Q ss_pred             eeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhhccc
Q 048591           79 ISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEV  146 (286)
Q Consensus        79 i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~~~~  146 (286)
                      |+++.++.+|.++       ++.++.++++|++++|++...   ++....|+|||++|++++..+.++
T Consensus       395 i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          395 VPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             EEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             eCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence            9999999999765       467899999999999999654   334467999999999999887654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.68  E-value=1.2e-17  Score=161.40  Aligned_cols=111  Identities=19%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             CccchhHHHHhhhhcCC---CcCCccchhhhhhccccccCccccccchhhHHhhhccCCChhh-HHHHhhhccCCCCcee
Q 048591            4 GENVRLDIVPTGGPLRV---TYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHL-KLCFLYLSVFPAHLEI   79 (286)
Q Consensus         4 C~GlPLal~~ig~~L~~---~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~-k~cFl~~a~Fp~~~~i   79 (286)
                      |+|+||||+++|+.|++   +.++|+.   .        .    ...+..+|++||+.||+++ |.||+|||+||+++.|
T Consensus       323 CgGLPLALkLaGs~Lr~k~~s~eeW~~---~--------~----~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I  387 (1221)
T 1vt4_I          323 LTTNPRRLSIIAESIRDGLATWDNWKH---V--------N----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI  387 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHSCSSHHHHHH---C--------S----CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCE
T ss_pred             hCCCHHHHHHHHHHHhCCCCCHHHHhc---C--------C----hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999987   4455655   3        1    1579999999999999999 9999999999999999


Q ss_pred             eHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHH
Q 048591           80 STRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLL  140 (286)
Q Consensus        80 ~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~  140 (286)
                      +++.++.+|+++|      ++.++.++++|+++||++...     ....|+|||++++++.
T Consensus       388 ~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          388 PTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV  437 (1221)
T ss_dssp             EHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred             CHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence            9999999999987      245889999999999999742     1256999999998653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.61  E-value=6.8e-16  Score=145.06  Aligned_cols=129  Identities=17%  Similarity=0.226  Sum_probs=103.6

Q ss_pred             CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccCc------cccccchhhHHhhhccCCChhhHHHHhhhccCCC
Q 048591            2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNI------EEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPA   75 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~~------~~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~   75 (286)
                      ++|+|+||||+.+|+.|+.....|+.   +++.+......      ......+..++..||+.||++.|.||++||+||+
T Consensus       315 ~~~~G~PLal~~~a~~l~~~~~~w~~---~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~  391 (591)
T 1z6t_A          315 KECKGSPLVVSLIGALLRDFPNRWEY---YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK  391 (591)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSTTCHHH---HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCT
T ss_pred             HHhCCCcHHHHHHHHHHhcCchhHHH---HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCC
Confidence            46999999999999999885568998   54443322110      1122478999999999999999999999999999


Q ss_pred             CceeeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhh
Q 048591           76 HLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVA  143 (286)
Q Consensus        76 ~~~i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~  143 (286)
                      |+.|+.+.++.+|.++       .+.++.++++|+++||++...   ++....|+||+++|++++...
T Consensus       392 ~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          392 DVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             TCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred             CCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence            9999999999999753       345788999999999998654   234467999999999998773

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=2.7e-13  Score=104.31  Aligned_cols=118  Identities=21%  Similarity=0.133  Sum_probs=100.9

Q ss_pred             CCCEEEEEEecCCCc---ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhccccc
Q 048591          161 KKNVKRINVFYKQSD---FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIENLFL  236 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~  236 (286)
                      ...++.+.+..+...   .+..+..+++|+.|.+.++....    .  ..+..+++|++|++++|.++. +|..++.+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC----C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC----c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            456788888887744   45555689999999999998864    2  678899999999999999987 8888888999


Q ss_pred             cceeeeccccccccc--hhHhhCCCCccEEecCCCCccccch----HHhhhhccC
Q 048591          237 LRYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDHTAD----EFTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~~~  285 (286)
                      |++|++++|.++.+|  ..+ +.+++|++|++++|.+..+|.    .++.+++|+
T Consensus        90 L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            999999999999876  778 999999999999999988876    688888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.42  E-value=5.2e-13  Score=104.84  Aligned_cols=118  Identities=19%  Similarity=0.095  Sum_probs=87.9

Q ss_pred             CCCEEEEEEecCCCc---ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhccccc
Q 048591          161 KKNVKRINVFYKQSD---FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIENLFL  236 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~  236 (286)
                      +..++.+.+..+...   ++..+..+++|+.|.+.++....    .  ..+..+++|++|++++|.+.. +|..++.+++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            456777777777643   44444577888888888887754    2  567778888888888888776 6777777888


Q ss_pred             cceeeeccccccccc--hhHhhCCCCccEEecCCCCccccch----HHhhhhccC
Q 048591          237 LRYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDHTAD----EFTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~~~  285 (286)
                      |++|++++|.++.+|  ..+ +.+++|++|++++|.+..+|.    .+..+++|+
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            888888888888876  566 888888888888888877776    666676654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=7e-13  Score=109.66  Aligned_cols=121  Identities=21%  Similarity=0.161  Sum_probs=96.4

Q ss_pred             CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591          160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  236 (286)
                      .+..++.+.+..+....  +..+..+++|+.|.+.++....    ..+..|..+++|++|+|++|.++.+|.. ++.+.+
T Consensus        38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~----i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA----LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH  113 (229)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC----cChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence            45678888888887542  3445578899999999988864    4456678899999999999998888755 578899


Q ss_pred             cceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      |++|++++|+|+.+|..+ +.+++|++|++++|++..+|.. +..+++|+
T Consensus       114 L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A          114 LKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             CCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            999999999999999998 9999999999999988887753 56666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.37  E-value=9.6e-13  Score=114.75  Aligned_cols=119  Identities=17%  Similarity=0.090  Sum_probs=73.0

Q ss_pred             CCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhh---------hcCCCceEEEEeeCCCCccCchhh
Q 048591          162 KNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGII---------CLMLEFLRVLDLGSLVLIQYPSGI  231 (286)
Q Consensus       162 ~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~---------~~~l~~Lr~L~l~~~~l~~lp~~i  231 (286)
                      ..++.+.+..+... ++..+..+++|+.|.+.++....    ..|..         +..+++|++|++++|.++.+|..+
T Consensus       127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~----~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l  202 (328)
T 4fcg_A          127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELT----ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI  202 (328)
T ss_dssp             TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCC----CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred             CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcc----ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhh
Confidence            45566666655532 33344456666666666644432    22222         233666777777777766777777


Q ss_pred             ccccccceeeeccccccccchhHhhCCCCccEEecCCCCc-cccchHHhhhhccC
Q 048591          232 ENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHARNT  285 (286)
Q Consensus       232 ~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~~~  285 (286)
                      +.+++|++|++++|.+..+|..+ +.+++|++|++++|++ ..+|..++++++|+
T Consensus       203 ~~l~~L~~L~L~~N~l~~l~~~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          203 ANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             GGCTTCCEEEEESSCCCCCCGGG-GGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             cCCCCCCEEEccCCCCCcCchhh-ccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            77777777777777777777766 7777777777777654 56666666665553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.36  E-value=1.6e-12  Score=106.93  Aligned_cols=122  Identities=16%  Similarity=0.116  Sum_probs=96.3

Q ss_pred             CCCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591          160 SKKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  236 (286)
                      .+..++.+.+..+.....  ..+..+++|+.|.+.++....    ..+..|..+++|++|+|++|.++.+|.. +..+++
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~  105 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS  105 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence            345788888888875422  245578899999999988865    4567888999999999999999988865 578999


Q ss_pred             cceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      |++|+|++|+|+.+|...|+.+++|++|++++|.+..+|.+ +..+++++
T Consensus       106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  155 (220)
T 2v9t_B          106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ  155 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence            99999999999888554338999999999999999877764 66666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=1.1e-12  Score=104.00  Aligned_cols=118  Identities=13%  Similarity=0.046  Sum_probs=96.2

Q ss_pred             CCCEEEEEEecCCCcccccCCCCC-CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhh-ccccccc
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDS-HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGI-ENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~L~  238 (286)
                      ...++.+.+..+.....+.+..+. +|+.|.+.++....     + ..+..+++|+.|++++|.++.+|..+ +.+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            567888888887754333333444 89999999988763     2 57888999999999999999888665 8899999


Q ss_pred             eeeeccccccccch--hHhhCCCCccEEecCCCCccccchH----HhhhhccC
Q 048591          239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHTADE----FTLHARNT  285 (286)
Q Consensus       239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~lP~~----i~~L~~~~  285 (286)
                      +|++++|.+..+|.  .+ +.+++|++|++++|.+..+|..    ++.+++++
T Consensus        92 ~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             EEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             EEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence            99999999999987  77 8999999999999999888885    78887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=1.9e-12  Score=104.43  Aligned_cols=119  Identities=14%  Similarity=0.098  Sum_probs=95.5

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccc
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLR  238 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~  238 (286)
                      ....++.+.+..+....+..+..+++|++|.+.++....    ..+..+..+++|++|++++|.+. ..|..++.+++|+
T Consensus        64 ~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           64 YAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS----DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             GCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBG----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             cCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCc----ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            345788888888876655566688899999998887753    34567888899999999999887 4677888999999


Q ss_pred             eeeecccc-ccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          239 YLKLNIPS-LKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       239 ~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      +|++++|. +..+| .+ +.+++|++|++++|.+..+| .+..+++|+
T Consensus       140 ~L~L~~n~~i~~~~-~l-~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~  184 (197)
T 4ezg_A          140 SIDLSYNGAITDIM-PL-KTLPELKSLNIQFDGVHDYR-GIEDFPKLN  184 (197)
T ss_dssp             EEECCSCTBCCCCG-GG-GGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred             EEEccCCCCccccH-hh-cCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence            99999997 88887 57 88999999999999888877 677777664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.36  E-value=2.4e-12  Score=104.64  Aligned_cols=122  Identities=19%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             CCCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591          160 SKKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  236 (286)
                      ....++.+.+..+... .+. .+..+++|++|.+.++....    ..+..+..+++|++|++++|.++.+|.. ++.+++
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  101 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ  101 (208)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc----cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence            3456777777777643 222 24467888888888877754    3445567788888888888888777754 577888


Q ss_pred             cceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      |++|++++|.+..+|...++++++|++|++++|.+..+|.. +.++++++
T Consensus       102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  151 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  151 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence            88888888888877776447788888888888877776664 45555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.35  E-value=2.2e-12  Score=112.46  Aligned_cols=119  Identities=21%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             CCCEEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccc
Q 048591          161 KKNVKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~  238 (286)
                      ...++.+.+..+.. .++..+..+++|+.|.+.++....     ++..+..+++|+.|++++|. ...+|..++.+++|+
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            44566666666653 344445567777777777777653     33457777888888888877 447777788888888


Q ss_pred             eeeecccc-ccccchhHhhCCCCccEEecCCCCc-cccchHHhhhhccC
Q 048591          239 YLKLNIPS-LKILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHARNT  285 (286)
Q Consensus       239 ~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~~~  285 (286)
                      +|++++|+ +..+|..+ +++++|++|++++|++ +.+|..+++|++|+
T Consensus       257 ~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             EEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             EEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            88888875 56778888 8888888888888865 78888888888765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.34  E-value=2.9e-12  Score=107.33  Aligned_cols=121  Identities=23%  Similarity=0.244  Sum_probs=84.2

Q ss_pred             CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591          161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  237 (286)
                      ...++.+.+..+....  +..+..+++|+.|.+.++....    ..+..+..+++|+.|++++|.++.+|.. ++.+++|
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS----LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc----cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence            4566777776665332  2224467777777777777654    4455677788888888888888877754 5778888


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhccC
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~~~  285 (286)
                      ++|++++|+++.+|...|+.+++|++|++++|++..+|. .+.++++|+
T Consensus       134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            888888888888877432788888888888888876665 455565553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=106.09  Aligned_cols=120  Identities=11%  Similarity=-0.002  Sum_probs=85.3

Q ss_pred             CCCEEEEEEecCCCccc---ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591          161 KKNVKRINVFYKQSDFV---HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL  236 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~---~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  236 (286)
                      +..++.+.+..+.....   ..+..+++|+.|.+.++....    ..+..|..+++|+.|++++|.++.+|. .++.+++
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  106 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES  106 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence            34566777777764422   123467888888888887764    344567788888888888888877664 4777888


Q ss_pred             cceeeecccccccc-chhHhhCCCCccEEecCCCCcccc-chHHhhhhccC
Q 048591          237 LRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~~  285 (286)
                      |++|+|++|+|..+ |..+ +.+++|++|++++|.+..+ |..+..+++|+
T Consensus       107 L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A          107 LKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             CCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             CCEEECCCCcCCeECHhHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            88888888888777 4455 7888888888888888666 56666666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.33  E-value=3.2e-12  Score=109.52  Aligned_cols=122  Identities=19%  Similarity=0.030  Sum_probs=96.4

Q ss_pred             CCCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591          160 SKKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL  237 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  237 (286)
                      ....++.+.+..+... ++..+..+++|+.|.+.++....    ..+..|..+++|+.|++++|.++.+|.. +..+++|
T Consensus        75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~----l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS----LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC----CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcc----cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            3456778888777643 44445578889999998888765    4456788889999999999998888754 5788899


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++|++++|+++.+|..+|..+++|++|++++|.+..+|.++..+++++
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~  198 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP  198 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCS
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCC
Confidence            999999999999988775788999999999999988998887766553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.32  E-value=3.6e-12  Score=108.03  Aligned_cols=121  Identities=19%  Similarity=0.192  Sum_probs=76.3

Q ss_pred             CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591          161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  237 (286)
                      ...++.+.+..+... .+ ..+..+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|.. ++.+++|
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS----LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc----cCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            345666666665533 12 123456667777776666654    3344566777777777777777766644 4677777


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++|++++|++..+|...++.+++|++|++++|++..+|.. ++++++|+
T Consensus       160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            7777777777777665446777777777777777665543 45555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.32  E-value=5.3e-12  Score=104.34  Aligned_cols=99  Identities=23%  Similarity=0.208  Sum_probs=89.6

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCCc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .++|+.|.+.++....    ..+..+..+++|+.|+|++|.+..+|.. ++.+++|++|+|++|+|+.+|..+|+.+++|
T Consensus        39 ~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  114 (229)
T 3e6j_A           39 PTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL  114 (229)
T ss_dssp             CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence            4899999999999876    4567889999999999999999999854 6899999999999999999998765899999


Q ss_pred             cEEecCCCCccccchHHhhhhccC
Q 048591          262 YTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       262 ~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++|++++|++..+|..+.++++|+
T Consensus       115 ~~L~Ls~N~l~~lp~~~~~l~~L~  138 (229)
T 3e6j_A          115 KELFMCCNKLTELPRGIERLTHLT  138 (229)
T ss_dssp             CEEECCSSCCCSCCTTGGGCTTCS
T ss_pred             CeEeccCCcccccCcccccCCCCC
Confidence            999999999999999999888775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.31  E-value=3.5e-12  Score=110.39  Aligned_cols=116  Identities=16%  Similarity=0.087  Sum_probs=80.4

Q ss_pred             CCEEEEEEecCCC----cccccCCCCCCeeEEEEec-CCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccc
Q 048591          162 KNVKRINVFYKQS----DFVHFVDDDSHMHSLLYFT-SKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLF  235 (286)
Q Consensus       162 ~~~r~l~l~~~~~----~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~  235 (286)
                      ..++.+.+..+..    ..+..+..+++|++|.+.+ +....    ..|..+..+++|++|++++|.+. .+|..++.++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            5677777776663    2445555777777777774 55443    34566777777777777777776 6777777777


Q ss_pred             ccceeeecccccc-ccchhHhhCCCCccEEecCCCCcc-ccchHHhhhh
Q 048591          236 LLRYLKLNIPSLK-ILPSSLLSNLLNLYTLDMPFSYID-HTADEFTLHA  282 (286)
Q Consensus       236 ~L~~L~L~~~~i~-~LP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~  282 (286)
                      +|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..+++++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence            7777777777766 667777 77777777777777774 6777776665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.31  E-value=4.9e-12  Score=99.24  Aligned_cols=112  Identities=16%  Similarity=0.028  Sum_probs=98.0

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhccccccc
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~  238 (286)
                      ...++.+.+..+.......+..+++|+.|.+.++....    .++..+..+++|++|++++|.++.+|  ..++.+++|+
T Consensus        48 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           48 FVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCS----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             CCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCch----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            45788999998885544566689999999999999875    35677788999999999999999887  7899999999


Q ss_pred             eeeeccccccccch----hHhhCCCCccEEecCCCCccccchH
Q 048591          239 YLKLNIPSLKILPS----SLLSNLLNLYTLDMPFSYIDHTADE  277 (286)
Q Consensus       239 ~L~L~~~~i~~LP~----~i~~~L~~L~~L~l~~~~l~~lP~~  277 (286)
                      +|++++|.+..+|.    .+ +.+++|++|++++|.+.++|.+
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVF-KLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHH-TTCSSCCEETTEETTSCBCCSS
T ss_pred             EEEeeCCcCcchHHHHHHHH-HhCccCcEecCCCCChhhcccc
Confidence            99999999999998    56 9999999999999999888864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.31  E-value=5.5e-12  Score=105.59  Aligned_cols=106  Identities=17%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             CCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccc
Q 048591          162 KNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~  238 (286)
                      ..++.+.+..+... .+ ..+..+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|. .++.+++|+
T Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC----cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            45555555555432 11 122345556666665555543    233344555556666666665555554 355555666


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      +|++++|.+..+|...+..+++|++|++++|.+
T Consensus       159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            666666655555543225555666666655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=7.2e-12  Score=99.13  Aligned_cols=111  Identities=19%  Similarity=0.126  Sum_probs=91.1

Q ss_pred             EEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeec
Q 048591          166 RINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLN  243 (286)
Q Consensus       166 ~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~  243 (286)
                      .+.+..+. ..++..+  .++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+|.. ++.+++|++|+|+
T Consensus        16 ~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGI--PTDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEeCCCCCCccCCCc--CCCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            44555444 3344444  4899999999999876    5567899999999999999999999976 5899999999999


Q ss_pred             cccccccchhHhhCCCCccEEecCCCCccccchHHhhhh
Q 048591          244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHA  282 (286)
Q Consensus       244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~  282 (286)
                      +|+|+.+|...|+.+++|++|++++|.+...|.++..|.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~  128 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR  128 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence            999999999743999999999999999887777665544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.29  E-value=5.3e-12  Score=108.14  Aligned_cols=121  Identities=17%  Similarity=0.133  Sum_probs=96.0

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR  238 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~  238 (286)
                      ....++.+.+..+..........+++|++|.+.++...     .++..+..+++|+.|++++|.++.+| ..++.+++|+
T Consensus        53 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~  127 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (290)
T ss_dssp             TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             cCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence            34567777777776543333347888888888888876     34566788899999999999999887 5688999999


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCccccchHH-hhhhccC
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEF-TLHARNT  285 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i-~~L~~~~  285 (286)
                      +|++++|+++.+|..+|..+++|++|++++|++..+|.++ .++++|+
T Consensus       128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  175 (290)
T 1p9a_G          128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (290)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence            9999999999998876688999999999999998888764 5566654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.28  E-value=1.3e-11  Score=99.56  Aligned_cols=117  Identities=9%  Similarity=0.046  Sum_probs=97.8

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhccccccce
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIENLFLLRY  239 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~L~~  239 (286)
                      ...++.+.+..+.....+.+..+++|++|.+.++....      .+.+..+++|+.|++++|.++. .|..++.+++|++
T Consensus        43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34678888988775533355589999999999996542      3478899999999999999884 6788999999999


Q ss_pred             eeeccccccc-cchhHhhCCCCccEEecCCCC-ccccchHHhhhhccC
Q 048591          240 LKLNIPSLKI-LPSSLLSNLLNLYTLDMPFSY-IDHTADEFTLHARNT  285 (286)
Q Consensus       240 L~L~~~~i~~-LP~~i~~~L~~L~~L~l~~~~-l~~lP~~i~~L~~~~  285 (286)
                      |++++|.+.. .|..+ +.+++|++|++++|. +..+| .+..+++|+
T Consensus       117 L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A          117 LDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             EECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             EEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence            9999999885 67788 999999999999998 88888 588887765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=2e-12  Score=124.28  Aligned_cols=115  Identities=19%  Similarity=0.143  Sum_probs=90.4

Q ss_pred             CCCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591          160 SKKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR  238 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~  238 (286)
                      ....++.|.+..+... ++..+..+++|++|.+.+|.+.     .+|..+..+++|++|+|++|.++.+|..++.|++|+
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            3456778888777643 4444447888888888888776     345677888889999999988888888888888999


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCcc-ccchHHhh
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID-HTADEFTL  280 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~  280 (286)
                      +|+|++|.|..+|.++ ++|++|++|+|++|.+. .+|..+..
T Consensus       297 ~L~L~~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEF-GNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             EEECCSSCCCCCCSST-TSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             EEECCCCCCCccChhh-hcCCCccEEeCCCCccCCCChHHHhh
Confidence            9999988888888888 88999999999988884 45555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.27  E-value=6.1e-12  Score=118.28  Aligned_cols=122  Identities=13%  Similarity=0.022  Sum_probs=91.8

Q ss_pred             CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591          160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  236 (286)
                      .+..++++.+..+... ++ ..+.++++|++|++.++....    ..+..|.++++|++|+|++|.++.+|. .++.+++
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            4567888888888754 22 345578888888888887764    445668888888888888888887774 4678888


Q ss_pred             cceeeeccccccccchhHhhCCCCccEEecCCCCcc--ccchHHhhhhccC
Q 048591          237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID--HTADEFTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~~  285 (286)
                      |++|++++|+++.+|...|++|++|++|++++|.+.  .+|..++++++|+
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            888888888888887753388888888888888774  4567777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=5.9e-12  Score=117.56  Aligned_cols=111  Identities=16%  Similarity=0.070  Sum_probs=95.5

Q ss_pred             CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591          163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL  242 (286)
Q Consensus       163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L  242 (286)
                      .++.+.+..+.....+.++.+++|+.|.+.+|...     .+|..+..+++|+.|+|++|.++.+| .++.+++|++|+|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCccccc-----ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence            46778888877443333668999999999999887     35678999999999999999999998 8999999999999


Q ss_pred             cccccccc--chhHhhCCCCccEEecCCCCccccchHHhh
Q 048591          243 NIPSLKIL--PSSLLSNLLNLYTLDMPFSYIDHTADEFTL  280 (286)
Q Consensus       243 ~~~~i~~L--P~~i~~~L~~L~~L~l~~~~l~~lP~~i~~  280 (286)
                      ++|.|+.+  |..+ +.+++|++|++++|.+..+|+.+..
T Consensus       516 s~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          516 CNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             CSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             CCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHH
Confidence            99999988  8899 9999999999999999887765433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.26  E-value=1.7e-11  Score=103.76  Aligned_cols=121  Identities=17%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591          161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L  237 (286)
                      ...++.+.+..+... ++. .+..+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|. .++.+++|
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC----CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc----CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            355666666665532 222 22356777777777766654    334556777778888888887776663 45778888


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++|++++|.+..+|...|+.+++|++|++++|.+..+|.. +.++++|+
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence            8888888888877776447788888888888888777654 55555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.26  E-value=1.5e-11  Score=98.92  Aligned_cols=107  Identities=16%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             CCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccc
Q 048591          161 KKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~  238 (286)
                      +..++.+.+..+... ++..+..+++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+|. .++.+++|+
T Consensus        30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST----LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            345666666666533 33344466667777776666654    334556666777777777777665553 466666777


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      +|+|++|.|+.+|...|..+++|++|++++|.+
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            777777777666665336667777777766654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.26  E-value=3.1e-12  Score=122.92  Aligned_cols=101  Identities=24%  Similarity=0.181  Sum_probs=90.9

Q ss_pred             cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCC
Q 048591          179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNL  258 (286)
Q Consensus       179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L  258 (286)
                      .+..+++|+.|.+.++....     ++..+..+++|+.|+|++|.++.+|..++.|++|++|+|++|.|+.+|.++ ++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l  292 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSC  292 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGG
T ss_pred             hhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCC
Confidence            44578999999999998864     445566899999999999999999999999999999999999999999999 999


Q ss_pred             CCccEEecCCCCccccchHHhhhhccC
Q 048591          259 LNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       259 ~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      .+|++|+|++|.+..+|.++++|++|+
T Consensus       293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~  319 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLPWEFGNLCNLQ  319 (727)
T ss_dssp             TTCSEEECCSSCCCCCCSSTTSCTTCC
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCcc
Confidence            999999999999999999999998876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=1.7e-11  Score=97.03  Aligned_cols=116  Identities=18%  Similarity=0.200  Sum_probs=90.6

Q ss_pred             CCCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591          160 SKKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  236 (286)
                      ....++.+.+..+... .+. .+..+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|.. ++.+++
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----eChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence            3467888888887744 222 34578899999999888765    4455678899999999999999888765 678999


Q ss_pred             cceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHh
Q 048591          237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFT  279 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~  279 (286)
                      |++|++++|.++.+|..++..+++|++|++++|.+...++.+.
T Consensus       102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~  144 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  144 (177)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred             cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHH
Confidence            9999999999999988765789999999999998754444343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.25  E-value=9.7e-12  Score=116.83  Aligned_cols=119  Identities=16%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccccc
Q 048591          161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L  237 (286)
                      +..++.+.+..+... .+ ..+.++++|++|.+.++....    ..+..|.++++|++|++++|.++.+ |..++.+++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            345555665555532 11 133355566666665555443    2334455555555555555555544 4455555555


Q ss_pred             ceeeeccccccccc-hhHhhCCCCccEEecCCCCcc--ccchHHhhhhcc
Q 048591          238 RYLKLNIPSLKILP-SSLLSNLLNLYTLDMPFSYID--HTADEFTLHARN  284 (286)
Q Consensus       238 ~~L~L~~~~i~~LP-~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~  284 (286)
                      ++|++++|.+..+| ..+ +++++|++|++++|.+.  .+|..++++++|
T Consensus       107 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  155 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNL  155 (606)
T ss_dssp             CEEECTTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred             CEEEccCCcccccccccc-CCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence            55555555555554 334 55555555555555553  345555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.25  E-value=1.7e-11  Score=103.85  Aligned_cols=86  Identities=21%  Similarity=0.149  Sum_probs=39.6

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      .+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|.. ++.+++|++|++++|++..+|...++.+++
T Consensus       131 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQS----LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCc----cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence            44455555554444432    2223344445555555555554444432 344455555555555544444432244555


Q ss_pred             ccEEecCCCCc
Q 048591          261 LYTLDMPFSYI  271 (286)
Q Consensus       261 L~~L~l~~~~l  271 (286)
                      |++|++++|.+
T Consensus       207 L~~L~l~~N~~  217 (272)
T 3rfs_A          207 LQYIWLHDNPW  217 (272)
T ss_dssp             CCEEECCSSCB
T ss_pred             CCEEEccCCCc
Confidence            55555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.25  E-value=2e-11  Score=103.23  Aligned_cols=120  Identities=21%  Similarity=0.195  Sum_probs=83.1

Q ss_pred             CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591          161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  237 (286)
                      ...++.+.+..+... .+ ..+..+++|+.|.+.++....    ..+..+..+++|+.|++++|.++.+|.. ++.+++|
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS----LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe----eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            456777777766643 22 233467788888888777765    3445567778888888888887777754 6777888


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-Hhhhhcc
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARN  284 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~  284 (286)
                      ++|++++|.+..+|...|.++++|++|++++|.+..+|.. +..+++|
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence            8888888887777765337778888888888877777654 4555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=2.7e-11  Score=95.77  Aligned_cols=100  Identities=20%  Similarity=0.155  Sum_probs=86.2

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      -.++|+.|.+.++....    ..+..+..+++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|...++.+++
T Consensus        26 ~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           26 IPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             CCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence            35799999999998865    4556788999999999999999988865 689999999999999999999875589999


Q ss_pred             ccEEecCCCCccccchHH-hhhhccC
Q 048591          261 LYTLDMPFSYIDHTADEF-TLHARNT  285 (286)
Q Consensus       261 L~~L~l~~~~l~~lP~~i-~~L~~~~  285 (286)
                      |++|++++|.+..+|..+ .++++++
T Consensus       102 L~~L~l~~N~l~~~~~~~~~~l~~L~  127 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDGIFDRLTSLQ  127 (177)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cCEEECcCCcceEeCHHHhcCCcccC
Confidence            999999999998898864 5666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=2.6e-11  Score=95.50  Aligned_cols=105  Identities=21%  Similarity=0.173  Sum_probs=85.9

Q ss_pred             EEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeec
Q 048591          166 RINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLN  243 (286)
Q Consensus       166 ~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~  243 (286)
                      .+.+..+.. .++..+  .++++.|.+.++....    ..+..|..+++|+.|+|++|.++.+|.. +..+++|++|+|+
T Consensus        13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            455555543 344433  4889999999999876    4567899999999999999999999876 5899999999999


Q ss_pred             cccccccchhHhhCCCCccEEecCCCCccccch
Q 048591          244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD  276 (286)
Q Consensus       244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~  276 (286)
                      +|+|+.+|...|+++++|++|++++|.+.-.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999999998744999999999999998754444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.23  E-value=1.3e-11  Score=101.34  Aligned_cols=99  Identities=19%  Similarity=0.125  Sum_probs=86.4

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .++++.|.+.++....    ..+..|..+++|+.|+|++|.++.+ |..+..+++|++|+|++|+|+.+|..+|..+++|
T Consensus        31 ~~~l~~L~l~~n~i~~----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L  106 (220)
T 2v9t_B           31 PETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL  106 (220)
T ss_dssp             CTTCCEEECCSSCCCE----ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCCEEECCCCcCCC----cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence            3689999999998875    4456789999999999999999866 7889999999999999999999999876899999


Q ss_pred             cEEecCCCCcccc-chHHhhhhccC
Q 048591          262 YTLDMPFSYIDHT-ADEFTLHARNT  285 (286)
Q Consensus       262 ~~L~l~~~~l~~l-P~~i~~L~~~~  285 (286)
                      ++|++++|.+..+ |..+..+++|+
T Consensus       107 ~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CEEECCCCCCCEeCHHHcCCCCCCC
Confidence            9999999999776 45677777664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.21  E-value=1.6e-11  Score=115.33  Aligned_cols=98  Identities=16%  Similarity=0.030  Sum_probs=87.1

Q ss_pred             CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccceeeeccccccccchhHhhCCCCcc
Q 048591          184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY  262 (286)
Q Consensus       184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~  262 (286)
                      ++++.|++.+|.+..    ..+..|.++++|++|+|++|.++.+|+ .++++++|++|+|++|+|+.+|...|++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             cCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            589999999999875    456789999999999999999998875 589999999999999999999987659999999


Q ss_pred             EEecCCCCccccchH-HhhhhccC
Q 048591          263 TLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       263 ~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      +|++++|++..+|.. +++|++|+
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~  151 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLK  151 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             EEECCCCcCCCCChhhhhcCcccC
Confidence            999999999888864 77777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.21  E-value=3.3e-11  Score=96.96  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=85.3

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .++++.|.+.++...     .++..+..+++|+.|+|++|.++.++ ..+..+++|++|+|++|+|+.+|...|+.+++|
T Consensus        30 ~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence            468999999999886     34578999999999999999999887 468999999999999999999987544999999


Q ss_pred             cEEecCCCCccccchH-HhhhhccC
Q 048591          262 YTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       262 ~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++|++++|.+..+|.+ +..+++++
T Consensus       105 ~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A          105 RLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CEEECCCCCCCeeChhhhhcCcccc
Confidence            9999999999988875 66666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.21  E-value=3.2e-11  Score=102.69  Aligned_cols=120  Identities=13%  Similarity=0.023  Sum_probs=77.2

Q ss_pred             CCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591          161 KKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L  237 (286)
                      ...++.+.+..+... . +..+..+++|+.|.+.++....    ..+..+..+++|+.|++++|.++.+|. .+..+++|
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc----cCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence            345666666665532 1 2234456677777777666654    333456677777777777777776664 36677777


Q ss_pred             ceeeecccccccc-chhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          238 RYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++|++++|.+..+ |..+ +.+++|++|++++|.+..+|.. +..+++|+
T Consensus       180 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             CEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             CEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence            7777777777665 5555 7777777777777777666643 66665553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=2.1e-11  Score=113.79  Aligned_cols=93  Identities=17%  Similarity=0.116  Sum_probs=85.3

Q ss_pred             CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591          185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL  264 (286)
Q Consensus       185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L  264 (286)
                      .|+.|.+.++....     +|. +..+++|+.|+|++|.++.+|..++.+++|++|+|++|.|+.+| ++ +++++|++|
T Consensus       442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEE
T ss_pred             CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEE
Confidence            58899999998864     344 89999999999999999999999999999999999999999999 88 999999999


Q ss_pred             ecCCCCcccc--chHHhhhhccC
Q 048591          265 DMPFSYIDHT--ADEFTLHARNT  285 (286)
Q Consensus       265 ~l~~~~l~~l--P~~i~~L~~~~  285 (286)
                      ++++|++..+  |..+++|++|+
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCC
Confidence            9999999887  89999998875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.20  E-value=2.3e-11  Score=105.23  Aligned_cols=118  Identities=11%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             CCCCEEEEEEec-CC--CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccc
Q 048591          160 SKKNVKRINVFY-KQ--SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~-~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~  235 (286)
                      ....++.+.+.. +.  ...+..+..+++|++|.+.++....    ..+..+..+++|++|++++|.+. .+|..++.++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            345677777773 44  2345555677888888888777753    45566777888888888888876 6777788888


Q ss_pred             ccceeeecccccc-ccchhHhhCCC-CccEEecCCCCc-cccchHHhhhh
Q 048591          236 LLRYLKLNIPSLK-ILPSSLLSNLL-NLYTLDMPFSYI-DHTADEFTLHA  282 (286)
Q Consensus       236 ~L~~L~L~~~~i~-~LP~~i~~~L~-~L~~L~l~~~~l-~~lP~~i~~L~  282 (286)
                      +|++|++++|.+. .+|..+ +++. +|++|++++|.+ ..+|..++.++
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             CCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            8888888888776 777777 7776 778888877777 36666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.20  E-value=3.2e-11  Score=106.41  Aligned_cols=110  Identities=16%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             CCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccc
Q 048591          162 KNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~  238 (286)
                      ..++.|.+..+.....  ..+..+++|+.|.+.+|....    ..+..|..+++|+.|+|++|.+..+ |..+..+.+|+
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  139 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ  139 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc----CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence            3455555555443211  123355555555555555543    2333455566666666666665544 34555666666


Q ss_pred             eeeeccccccccchhHh---hCCCCccEEecCCCCccccc
Q 048591          239 YLKLNIPSLKILPSSLL---SNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~---~~L~~L~~L~l~~~~l~~lP  275 (286)
                      +|+|++|.|..+|..+|   +.+++|++|+|++|++..+|
T Consensus       140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             EEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            66666666666666553   34566666666666665555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.19  E-value=2e-11  Score=96.55  Aligned_cols=98  Identities=15%  Similarity=0.056  Sum_probs=84.0

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      ++++|+.|.+.++....     ++......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+++.+++|
T Consensus        17 ~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             CcCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            78899999999998864     233333444999999999999987 678999999999999999999997766899999


Q ss_pred             cEEecCCCCccccch--HHhhhhccC
Q 048591          262 YTLDMPFSYIDHTAD--EFTLHARNT  285 (286)
Q Consensus       262 ~~L~l~~~~l~~lP~--~i~~L~~~~  285 (286)
                      ++|++++|.+..+|.  .++.+++|+
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLT  116 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCC
Confidence            999999999999997  788877764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.19  E-value=4e-11  Score=102.10  Aligned_cols=122  Identities=18%  Similarity=0.093  Sum_probs=87.5

Q ss_pred             CCCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCC-CCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccc
Q 048591          160 SKKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSK-SDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~  235 (286)
                      ....++.+.+..+... . +..+..+++|++|.+.++. ...    ..+..+..+++|+.|++++|.+..+ |..++.++
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  129 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS----VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc----cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence            3456777777766533 2 3345567788888887775 443    3356677888888888888887766 45677888


Q ss_pred             ccceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          236 LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       236 ~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      +|++|++++|.+..+|...++.+++|++|++++|++..+|.. +..+++|+
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            888888888888888776338888888888888888777764 66666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.19  E-value=3.2e-11  Score=102.19  Aligned_cols=119  Identities=18%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             CCCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591          161 KKNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L  237 (286)
                      ...++.+.+..+.... + ..+..+++|++|.+.++....    ..+..+..+++|+.|++++|.+..++. .++.+++|
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc----cChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            3456666666555331 1 134456667777766666543    334556777777777777777766654 57777777


Q ss_pred             ceeeeccccccc--cchhHhhCCCCccEEecCCCCccccc-hHHhhhhcc
Q 048591          238 RYLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSYIDHTA-DEFTLHARN  284 (286)
Q Consensus       238 ~~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~l~~lP-~~i~~L~~~  284 (286)
                      ++|++++|.+..  +|..+ +++++|++|++++|++..+| ..+..++++
T Consensus       127 ~~L~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             CEEECcCCccceecCchhh-ccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            777777777765  56777 77788888888877776554 345555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=2.4e-11  Score=97.54  Aligned_cols=106  Identities=13%  Similarity=0.080  Sum_probs=78.2

Q ss_pred             CCCEEEEEEecCCCc-ccc--cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591          161 KKNVKRINVFYKQSD-FVH--FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL  236 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  236 (286)
                      ...++.+.+..+... .+.  .+..+++|++|.+.++....    ..+..|..+++|+.|+|++|.++.+|. .++.+++
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  103 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence            347778888777644 222  14477888888888887765    446677888888888888888876654 4778888


Q ss_pred             cceeeecccccccc-chhHhhCCCCccEEecCCCCc
Q 048591          237 LRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       237 L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l  271 (286)
                      |++|+|++|+++.+ |..+ +.+++|++|++++|.+
T Consensus       104 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          104 LKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCEEECCSSCCCEECTTSS-TTCTTCCEEECTTCCB
T ss_pred             CCEEECCCCcCCeeCHHHh-hcCCCCCEEEeCCCCc
Confidence            88888888888766 5555 8888888888888876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.19  E-value=5.5e-11  Score=96.47  Aligned_cols=99  Identities=23%  Similarity=0.233  Sum_probs=85.6

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCCc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .++++.|.+.++....    ..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+|...|+++++|
T Consensus        27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKS----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEEcCCCccCc----CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence            5689999999998875    4556788999999999999999988865 5889999999999999999988755899999


Q ss_pred             cEEecCCCCccccchH-HhhhhccC
Q 048591          262 YTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       262 ~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++|++++|.+..+|.. +.++++|+
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~  127 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLK  127 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCC
Confidence            9999999999888775 56676654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.18  E-value=1.5e-11  Score=94.51  Aligned_cols=99  Identities=17%  Similarity=0.094  Sum_probs=85.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccc-cchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKI-LPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-LP~~i~~~L~~  260 (286)
                      ..++++.|.+.++.....   .++..+..+++|+.|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ +.+++
T Consensus        15 ~~~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~   89 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPN   89 (149)
T ss_dssp             CGGGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTT
T ss_pred             CCccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCC
Confidence            457899999999987511   3556778999999999999999988 789999999999999999998 77777 88999


Q ss_pred             ccEEecCCCCccccc--hHHhhhhccC
Q 048591          261 LYTLDMPFSYIDHTA--DEFTLHARNT  285 (286)
Q Consensus       261 L~~L~l~~~~l~~lP--~~i~~L~~~~  285 (286)
                      |++|++++|.+..+|  ..++++++|+
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            999999999998765  7788887764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.18  E-value=3.3e-11  Score=112.21  Aligned_cols=118  Identities=18%  Similarity=0.106  Sum_probs=61.4

Q ss_pred             CCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccc
Q 048591          162 KNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~  238 (286)
                      ..++.+.+..+... . +..+.++++|++|.+.++....    ..+..|..+++|++|++++|.++.+|. .++.+++|+
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  127 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc----cCHhhhcCccccccccccccccccCCCcccccccccc
Confidence            34445555444322 1 1123345555555555554432    233455555666666666665555543 455666666


Q ss_pred             eeeeccccccc--cchhHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591          239 YLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN  284 (286)
Q Consensus       239 ~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~  284 (286)
                      +|++++|.+..  +|..+ +++++|++|++++|.+..+ |..++.++++
T Consensus       128 ~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          128 ELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             EEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             EEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhcc
Confidence            66666666553  45666 6666666666666665443 3345555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.17  E-value=1.3e-10  Score=99.45  Aligned_cols=115  Identities=17%  Similarity=0.061  Sum_probs=79.7

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ...++.+.+..+.......+..+++|+.|.+.++....     + +.+..+++|+.|++++|.++.+ ..++.+++|++|
T Consensus        89 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L  161 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL  161 (291)
T ss_dssp             CTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred             CCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-----C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE
Confidence            45566666666664444445567777777777776643     1 3466777777777777777766 467777788888


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++++|.+..+|. + +.+++|++|++++|.+..+|. +..+++|+
T Consensus       162 ~L~~N~l~~~~~-l-~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~  203 (291)
T 1h6t_A          162 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLRA-LAGLKNLD  203 (291)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCGG-GTTCTTCS
T ss_pred             EccCCccccchh-h-cCCCccCEEECCCCcCCCChh-hccCCCCC
Confidence            888887777766 6 778888888888887777764 66666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.16  E-value=9.3e-11  Score=101.17  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=92.5

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      ....++.+.+..+.......+..+++|+.|.+.++....     + +.+..+++|+.|++++|.++.+|. ++.+++|++
T Consensus        61 ~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  133 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-----V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV  133 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-----C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             ccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-----c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence            456788888888775433336688889999998888754     2 357888899999999999888775 888999999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      |++++|.+..+|. + +.+++|++|++++|.+..+|. +.++++|+
T Consensus       134 L~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  176 (308)
T 1h6u_A          134 LYLDLNQITNISP-L-AGLTNLQYLSIGNAQVSDLTP-LANLSKLT  176 (308)
T ss_dssp             EECCSSCCCCCGG-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             EECCCCccCcCcc-c-cCCCCccEEEccCCcCCCChh-hcCCCCCC
Confidence            9999999888877 6 889999999999998888876 77776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.16  E-value=2.6e-11  Score=107.86  Aligned_cols=110  Identities=17%  Similarity=0.095  Sum_probs=58.8

Q ss_pred             CCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhh-ccccccc
Q 048591          162 KNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGI-ENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~L~  238 (286)
                      ..++.+.+..+.... + ..+..+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|..+ +.+++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc----CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            445555555544321 1 133355566666665555543    33444556666666666666666555443 5566666


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCccccc
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP  275 (286)
                      +|++++|.+..+|...++.+++|++|++++|.+..+|
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  181 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  181 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence            6666666655554432256666666666666554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.15  E-value=1.6e-10  Score=99.70  Aligned_cols=113  Identities=17%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK  241 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~  241 (286)
                      ..++.+.+..+.......+..+++|+.|.+.++.....     + .+..+++|+.|++++|.++.+|. ++.+++|++|+
T Consensus       107 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  179 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----S-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLK  179 (308)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----G-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcC-----c-cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEE
Confidence            34444554444433222233455555555555544321     1 15556666666666666665554 55666666666


Q ss_pred             eccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      +++|.+..+|. + ..+++|++|++++|.+..+|. +.++++|
T Consensus       180 l~~n~l~~~~~-l-~~l~~L~~L~L~~N~l~~~~~-l~~l~~L  219 (308)
T 1h6u_A          180 ADDNKISDISP-L-ASLPNLIEVHLKNNQISDVSP-LANTSNL  219 (308)
T ss_dssp             CCSSCCCCCGG-G-GGCTTCCEEECTTSCCCBCGG-GTTCTTC
T ss_pred             CCCCccCcChh-h-cCCCCCCEEEccCCccCcccc-ccCCCCC
Confidence            66666666554 4 666666666666666655553 5555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.15  E-value=7.2e-11  Score=104.15  Aligned_cols=120  Identities=16%  Similarity=0.104  Sum_probs=96.4

Q ss_pred             CCCCEEEEEEecCCCcc-c-ccCC-CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccc
Q 048591          160 SKKNVKRINVFYKQSDF-V-HFVD-DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~-~-~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~  235 (286)
                      .+..++.|.+..+.... + ..+. .+++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+|. .+..+.
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  112 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ  112 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence            45567889998887542 2 2343 78999999999998875    445678999999999999999998775 588999


Q ss_pred             ccceeeeccccccccch-hHhhCCCCccEEecCCCCccccchHH----hhhhcc
Q 048591          236 LLRYLKLNIPSLKILPS-SLLSNLLNLYTLDMPFSYIDHTADEF----TLHARN  284 (286)
Q Consensus       236 ~L~~L~L~~~~i~~LP~-~i~~~L~~L~~L~l~~~~l~~lP~~i----~~L~~~  284 (286)
                      +|++|+|++|.|..++. .+ ..+++|++|+|++|.+..+|..+    .++++|
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCCEEECCCCcccEECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            99999999999998854 56 99999999999999999999875    455554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.15  E-value=1e-10  Score=98.62  Aligned_cols=114  Identities=20%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ...++.+.+..+.......+..+++|+.|.+.++.....     +. +.. ++|+.|++++|.++.+| .++.+++|++|
T Consensus        62 l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l-----~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L  133 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL-----NG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEIL  133 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC-----TT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc-----Cc-ccc-CcccEEEccCCccCCCh-hhcCcccccEE
Confidence            456667777666643222255677777777777766532     11 222 66777777777777665 47777777777


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++++|+++.+| .+ +.+++|++|++++|.+..+ ..+.++++|+
T Consensus       134 ~Ls~N~i~~~~-~l-~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~  175 (263)
T 1xeu_A          134 SIRNNKLKSIV-ML-GFLSKLEVLDLHGNEITNT-GGLTRLKKVN  175 (263)
T ss_dssp             ECTTSCCCBCG-GG-GGCTTCCEEECTTSCCCBC-TTSTTCCCCC
T ss_pred             ECCCCcCCCCh-HH-ccCCCCCEEECCCCcCcch-HHhccCCCCC
Confidence            77777777776 46 7777777777777777655 4455555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.15  E-value=4.6e-11  Score=94.47  Aligned_cols=92  Identities=16%  Similarity=0.106  Sum_probs=77.3

Q ss_pred             eEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccchhHhhCCCCccEEe
Q 048591          187 HSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLD  265 (286)
Q Consensus       187 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~  265 (286)
                      +++.+.++....     +|..+  .++|+.|+|++|.++.+ |..++.+++|++|+|++|+|+.+|..+|+++++|++|+
T Consensus        15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            567777777753     33333  27899999999999988 56789999999999999999999998658999999999


Q ss_pred             cCCCCccccchH-HhhhhccC
Q 048591          266 MPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       266 l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      +++|++..+|.+ +.++++|+
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCCccceeCHHHhccccCCC
Confidence            999999999886 77777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.14  E-value=3.5e-11  Score=114.00  Aligned_cols=120  Identities=9%  Similarity=0.113  Sum_probs=91.1

Q ss_pred             CCCCEEEEEEecCCCc-------------------ccccCC--CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEE
Q 048591          160 SKKNVKRINVFYKQSD-------------------FVHFVD--DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLD  218 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~  218 (286)
                      ....++.+.+..+...                   ++..++  ++++|++|.+.++....    .+|..+.++++|+.|+
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEE
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEE
Confidence            4567788888877632                   566666  78888888888887655    5567778888888888


Q ss_pred             eeCCC-Cc--cCchhhccc------cccceeeeccccccccch--hHhhCCCCccEEecCCCCcc-ccchHHhhhhccC
Q 048591          219 LGSLV-LI--QYPSGIENL------FLLRYLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYID-HTADEFTLHARNT  285 (286)
Q Consensus       219 l~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~~~  285 (286)
                      +++|. ++  .+|..++.+      ++|++|++++|++..+|.  .+ +++++|++|++++|.+. .+| .++++++|+
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            88887 76  478877776      788888888888888887  77 88888888888888875 777 666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.13  E-value=4.8e-11  Score=116.30  Aligned_cols=119  Identities=12%  Similarity=0.112  Sum_probs=73.5

Q ss_pred             CCCCEEEEEEecCCCc-------------------ccccCC--CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEE
Q 048591          160 SKKNVKRINVFYKQSD-------------------FVHFVD--DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLD  218 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~  218 (286)
                      ....++.+.+..+...                   +|..++  .+++|+.|.+.++....    .+|..+.++++|+.|+
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEE
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEE
Confidence            3456677777766532                   445554  67777777777766544    4456666666666666


Q ss_pred             eeCCC-Ccc--Cchhhcccc-------ccceeeeccccccccch--hHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          219 LGSLV-LIQ--YPSGIENLF-------LLRYLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       219 l~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      +++|. ++.  +|..++.+.       +|++|++++|.+..+|.  .+ +++++|++|++++|.+..+| .++++++|
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L  597 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLE-AFGTNVKL  597 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence            66665 553  666666555       66666666666666666  56 66666666666666666666 55555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.13  E-value=5.2e-11  Score=104.58  Aligned_cols=117  Identities=18%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             CCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccc
Q 048591          162 KNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~  238 (286)
                      ..++.+.+..+... .+. .+..+++|++|.+.++....    ..+..+..+++|++|++++|.++.+|.. ++.+++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            35666666655533 111 23456666666666655543    2334455566666666666666655544 55566666


Q ss_pred             eeeeccccccccch--hHhhCCCCccEEecCCC-Cccccc-hHHhhhhc
Q 048591          239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFS-YIDHTA-DEFTLHAR  283 (286)
Q Consensus       239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~-~l~~lP-~~i~~L~~  283 (286)
                      +|++++|.++.+|.  .+ +++++|++|++++| .+..+| ..++++++
T Consensus       128 ~L~L~~n~l~~l~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             EEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             EEECCCCCCcccCchhhh-ccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            66666666665555  33 55666666666655 244442 33444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.13  E-value=8e-11  Score=94.50  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=90.4

Q ss_pred             EEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhh-hhcCCCceEEEEeeCCCCccC-chhhccccccceeee
Q 048591          166 RINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGI-ICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKL  242 (286)
Q Consensus       166 ~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L  242 (286)
                      .+.+..+. ..++..+  ..+++.|.+.++....    ..+. .+..+++|+.|++++|.++.+ |..++.+++|++|+|
T Consensus        12 ~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             EEEcCCCCcCcCccCC--CCCCCEEECCCCcCCc----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            45555544 2344433  3489999999998864    2222 488999999999999999876 678999999999999


Q ss_pred             ccccccccchhHhhCCCCccEEecCCCCcccc-chHHhhhhccC
Q 048591          243 NIPSLKILPSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARNT  285 (286)
Q Consensus       243 ~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~~  285 (286)
                      ++|+|+.+|...|+.+++|++|++++|++..+ |..+..+++++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            99999998876439999999999999999655 77787777664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.13  E-value=2.2e-10  Score=98.08  Aligned_cols=116  Identities=17%  Similarity=0.084  Sum_probs=96.7

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      ....++.+.+..+.......+..+++|+.|.+.++....     + +.+..+++|+.|++++|.++.++ .++.+++|++
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~  138 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES  138 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCE
T ss_pred             cCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-----C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCE
Confidence            356788899988875533336689999999999998764     2 34889999999999999999875 6889999999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      |++++|.+..+ ..+ +.+++|++|++++|.+..+|. +..+++|+
T Consensus       139 L~l~~n~l~~~-~~l-~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~  181 (291)
T 1h6t_A          139 LYLGNNKITDI-TVL-SRLTKLDTLSLEDNQISDIVP-LAGLTKLQ  181 (291)
T ss_dssp             EECCSSCCCCC-GGG-GGCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             EEccCCcCCcc-hhh-ccCCCCCEEEccCCccccchh-hcCCCccC
Confidence            99999999988 567 999999999999999988876 77777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.12  E-value=1.4e-10  Score=95.16  Aligned_cols=107  Identities=18%  Similarity=0.171  Sum_probs=92.1

Q ss_pred             CCCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591          160 SKKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  236 (286)
                      ....++.+.+..+.....  ..+..+++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+ |..++.+++
T Consensus        55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc----cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            356789999988875532  246689999999999999876    5567799999999999999999876 678999999


Q ss_pred             cceeeecccccccc-chhHhhCCCCccEEecCCCCc
Q 048591          237 LRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       237 L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l  271 (286)
                      |++|+|++|.++.+ |..+ ..+++|++|++++|.+
T Consensus       131 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAF-DTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTT-TTCTTCCEEECCSCCE
T ss_pred             CCEEECCCCcCCEECHHHh-cCCCCCCEEEecCcCC
Confidence            99999999999988 5666 9999999999999976

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.12  E-value=4.2e-11  Score=106.52  Aligned_cols=88  Identities=11%  Similarity=-0.019  Sum_probs=40.8

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .+++|+.|.+.++....    ..+..+..+++|+.|++++|.++.+|..++.+++|++|++++|++..+|..+ +.+++|
T Consensus       246 ~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L  320 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRL  320 (390)
T ss_dssp             GCTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTC
T ss_pred             CCCCccEEECCCCcCCC----cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcC
Confidence            34444444444444332    2233444444444444444444444444444444455555444444444444 444444


Q ss_pred             cEEecCCCCcccc
Q 048591          262 YTLDMPFSYIDHT  274 (286)
Q Consensus       262 ~~L~l~~~~l~~l  274 (286)
                      ++|++++|.+..+
T Consensus       321 ~~L~L~~N~i~~~  333 (390)
T 3o6n_A          321 ENLYLDHNSIVTL  333 (390)
T ss_dssp             SEEECCSSCCCCC
T ss_pred             CEEECCCCcccee
Confidence            4455544444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.12  E-value=1.3e-10  Score=98.47  Aligned_cols=91  Identities=16%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc--CchhhccccccceeeeccccccccchhHhhCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ--YPSGIENLFLLRYLKLNIPSLKILPSSLLSNLL  259 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~  259 (286)
                      .+++|++|.+.++....    ..+..+..+++|+.|++++|.+..  +|..++.+++|++|++++|++..+|...+..+.
T Consensus        98 ~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A           98 GLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             TCTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             CCccccEEECCCCCccc----cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence            44455555554444432    112234444555555555555443  344455555555555555554444322113333


Q ss_pred             Ccc----EEecCCCCccccch
Q 048591          260 NLY----TLDMPFSYIDHTAD  276 (286)
Q Consensus       260 ~L~----~L~l~~~~l~~lP~  276 (286)
                      +|+    .|++++|.+..+|.
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~  194 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQP  194 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECT
T ss_pred             hccccceeeecCCCcccccCc
Confidence            333    44555554444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.12  E-value=8.3e-11  Score=97.52  Aligned_cols=115  Identities=14%  Similarity=0.048  Sum_probs=69.7

Q ss_pred             CCCEEEEEEecCC-Cc-ccc-cCCCCCCeeEEEEec-CCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccc
Q 048591          161 KKNVKRINVFYKQ-SD-FVH-FVDDDSHMHSLLYFT-SKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFL  236 (286)
Q Consensus       161 ~~~~r~l~l~~~~-~~-~~~-~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~  236 (286)
                      ...++.+.+..+. .. ++. .+..+++|++|.+.+ +....    ..+..|..+++|+.|++++|.++.+|. ++.+.+
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~----i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~  128 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY----IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYS  128 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCB
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----cCHHHhCCCCCCCEEeCCCCCCccccc-cccccc
Confidence            3456666666653 32 221 233566666666665 55543    333456666667777777776666665 666666


Q ss_pred             cc---eeeeccc-cccccchhHhhCCCCcc-EEecCCCCccccchHHhh
Q 048591          237 LR---YLKLNIP-SLKILPSSLLSNLLNLY-TLDMPFSYIDHTADEFTL  280 (286)
Q Consensus       237 L~---~L~L~~~-~i~~LP~~i~~~L~~L~-~L~l~~~~l~~lP~~i~~  280 (286)
                      |+   +|++++| .++.+|...|+.+++|+ +|++++|++..+|..+..
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            66   7777777 67767665336777777 777777777666665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.11  E-value=1.1e-10  Score=109.49  Aligned_cols=120  Identities=18%  Similarity=0.163  Sum_probs=100.8

Q ss_pred             CCCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccc
Q 048591          160 SKKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~  236 (286)
                      ....++++.+..+... . +..+.++++|++|.+.++....    ..|..+.++++|++|++++|.+..+| ..++.+++
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc----cChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence            4568899999988744 2 3456689999999999998875    45778999999999999999998777 77999999


Q ss_pred             cceeeecccccc--ccchhHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591          237 LRYLKLNIPSLK--ILPSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN  284 (286)
Q Consensus       237 L~~L~L~~~~i~--~LP~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~  284 (286)
                      |++|++++|.+.  .+|..+ +++++|++|++++|++..+ |..++.++++
T Consensus       130 L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             CCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            999999999987  579999 9999999999999999665 4557777655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.10  E-value=1.6e-10  Score=106.61  Aligned_cols=115  Identities=13%  Similarity=0.059  Sum_probs=90.4

Q ss_pred             CCCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591          161 KKNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~  238 (286)
                      ...++++.+..+.... + ..+..+++|++|.+.++....    ..+..|..+++|++|++++|.++.+|..  .+++|+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~   93 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK   93 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence            4678888888887542 2 345588899999999888764    4567888999999999999998888876  788999


Q ss_pred             eeeeccccccc--cchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          239 YLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       239 ~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      +|++++|.+..  +|..+ +++++|++|++++|.+..  ..+..++++
T Consensus        94 ~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L  138 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHL  138 (520)
T ss_dssp             EEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTS
T ss_pred             EEeccCCccccccchhhh-ccCCcceEEEecCcccch--hhccccccc
Confidence            99999998875  56788 999999999999988854  335555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.10  E-value=1.4e-10  Score=105.06  Aligned_cols=118  Identities=19%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             CCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccc
Q 048591          162 KNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~  238 (286)
                      ..++.+.+..+...  .+..+..+++|+.|.+.++....    ..+..+..+++|+.|++++|.+..+ |..++.+++|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence            34566666655532  22334456666666666666543    3344556666666666666666544 34556666666


Q ss_pred             eeeecccccccc-chhHhhCCCCccEEecCCCCccccchH-Hhhhhcc
Q 048591          239 YLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARN  284 (286)
Q Consensus       239 ~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~  284 (286)
                      +|++++|++..+ |..+ +.+++|++|++++|++..+|.. +..+++|
T Consensus       351 ~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSF-LGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             EEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             EEECCCCcccccChhhc-cccccccEEECCCCccccCCHhHhccCCcc
Confidence            666666666655 4445 6666666666666666555543 2444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.10  E-value=1e-10  Score=96.96  Aligned_cols=118  Identities=12%  Similarity=0.071  Sum_probs=78.1

Q ss_pred             CCCCEEEEEEec-CCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceE---EEEeeCC-CCccCch-hh
Q 048591          160 SKKNVKRINVFY-KQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLR---VLDLGSL-VLIQYPS-GI  231 (286)
Q Consensus       160 ~~~~~r~l~l~~-~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr---~L~l~~~-~l~~lp~-~i  231 (286)
                      ....++.+.+.. +... .+ ..+..+++|+.|.+.++....     ++. +..+++|+   .|++++| .++.+|. .+
T Consensus        78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~  151 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF  151 (239)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred             CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCcccc
Confidence            345677777776 5543 22 233467788888888777654     222 55555555   8888888 6777664 37


Q ss_pred             ccccccc-eeeeccccccccchhHhhCCCCccEEecCCC-CccccchH-Hhhh-hcc
Q 048591          232 ENLFLLR-YLKLNIPSLKILPSSLLSNLLNLYTLDMPFS-YIDHTADE-FTLH-ARN  284 (286)
Q Consensus       232 ~~L~~L~-~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~-i~~L-~~~  284 (286)
                      +.+++|+ +|++++|+++.+|... ....+|++|++++| .+..+|.. +..+ +++
T Consensus       152 ~~l~~L~~~L~l~~n~l~~i~~~~-~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          152 QGLCNETLTLKLYNNGFTSVQGYA-FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             TTTBSSEEEEECCSCCCCEECTTT-TTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             cchhcceeEEEcCCCCCcccCHhh-cCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            7778888 8888888887887776 44477888888888 47777543 4555 444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.10  E-value=8e-11  Score=101.93  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             CCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCcc--ccchHHhhhh
Q 048591          211 LEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID--HTADEFTLHA  282 (286)
Q Consensus       211 l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~  282 (286)
                      +++|+.|++++|.++.+|..++.+++|++|++++|.++.+|..+ +.+++|+.|++++|.+.  .+|..++.++
T Consensus       190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh-hcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence            44444455555544444444555555555555555555555544 55555555555555442  3444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.09  E-value=9.8e-11  Score=92.16  Aligned_cols=93  Identities=17%  Similarity=0.113  Sum_probs=77.3

Q ss_pred             eeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591          186 MHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL  264 (286)
Q Consensus       186 Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L  264 (286)
                      .+++.+.++....     +|..+  .+.|+.|+|++|.++.+ |..++.+++|++|+|++|+|+.+|..+|..+++|++|
T Consensus        11 ~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            3567777777754     33333  37899999999999988 5679999999999999999999999876899999999


Q ss_pred             ecCCCCccccchH-HhhhhccC
Q 048591          265 DMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       265 ~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++++|++..+|.+ +.++++|+
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ECCCCccCEeCHHHhcCCCCCC
Confidence            9999999888875 77777764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.09  E-value=1.6e-10  Score=104.98  Aligned_cols=113  Identities=20%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591          160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~  236 (286)
                      .+..++.+.+..+....  +..+..+++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+|.. ++.+++
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  148 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK  148 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC----cChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence            34567777777766442  2344567777777777776654    3445666777777777777777766643 666777


Q ss_pred             cceeeeccccccccchhHhhCCCCccEEecCCC-Cccccch
Q 048591          237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFS-YIDHTAD  276 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~  276 (286)
                      |++|++++|.+..+|...|.++++|++|++++| .+..+|.
T Consensus       149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence            777777777776666543355555555555553 3344443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.09  E-value=7.4e-11  Score=108.25  Aligned_cols=117  Identities=10%  Similarity=-0.026  Sum_probs=62.0

Q ss_pred             CCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhc-CCCceEEEEeeCCCCccCchhhccccccc
Q 048591          162 KNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICL-MLEFLRVLDLGSLVLIQYPSGIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~  238 (286)
                      ..++.+.+..+....  +..+..+++|+.|.+.+|....    ..+..+. .+++|+.|+|++|.++.+|. ...+++|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~  194 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLK  194 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCcccEEecCCCccccccc-cccCCCCC
Confidence            345666666555331  2233355666666666665543    2233332 45556666666555554443 22355556


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      +|+|++|.+..+|+++ +.+++|++|++++|.+..+|..++.++++
T Consensus       195 ~L~Ls~N~l~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L  239 (487)
T 3oja_A          195 TLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (487)
T ss_dssp             EEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             EEECCCCCCCCCCHhH-cCCCCccEEEecCCcCcccchhhccCCCC
Confidence            6666655555555555 55556666666665555555555444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.09  E-value=9.1e-11  Score=108.83  Aligned_cols=118  Identities=20%  Similarity=0.181  Sum_probs=64.9

Q ss_pred             CCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccc
Q 048591          162 KNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~  238 (286)
                      ..++.+.+..+....  +..+..+++|++|.+.++....    ..+..|..+++|++|++++|.++.+|.. ++.+++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            456666666655331  2234456666666666665543    3334556666666666666666655543 66666666


Q ss_pred             eeeeccccccc--cchhHhhCCCCccEEecCCCC-ccccc-hHHhhhhcc
Q 048591          239 YLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSY-IDHTA-DEFTLHARN  284 (286)
Q Consensus       239 ~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~-l~~lP-~~i~~L~~~  284 (286)
                      +|++++|.+..  .|..+ +++++|++|++++|. +..+| ..++++++|
T Consensus       102 ~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             EEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             EEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhccccc
Confidence            66666666553  34445 666666666666654 34454 234444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.08  E-value=9.6e-11  Score=111.55  Aligned_cols=121  Identities=19%  Similarity=0.104  Sum_probs=85.9

Q ss_pred             CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591          160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~  236 (286)
                      .+..++++.+..+... .+ ..+.++++|++|.+.++....    ..+..+.++++|++|++++|.++.+|. .++.+++
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence            3467888888877643 22 234577888888888877765    445677788888888888888887775 4778888


Q ss_pred             cceeeeccccccccch-hHhhCCCCccEEecCCCCccc-cchHHhhhhccC
Q 048591          237 LRYLKLNIPSLKILPS-SLLSNLLNLYTLDMPFSYIDH-TADEFTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~-~i~~~L~~L~~L~l~~~~l~~-lP~~i~~L~~~~  285 (286)
                      |++|++++|.+..+|. .+ +++++|++|++++|.+.. .|..++++++|+
T Consensus        99 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  148 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQ  148 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred             CCEEECCCCccCccChhHc-cccCCCCEEECCCCcccccCchhhcccccCC
Confidence            8888888888777764 45 788888888888887744 344455555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.08  E-value=2.2e-10  Score=110.72  Aligned_cols=98  Identities=19%  Similarity=0.189  Sum_probs=48.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccceeeecccccc-ccchhHhhCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-ILPSSLLSNLL  259 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~~L~  259 (286)
                      .+++|+.|.+.++....    ..+..+..+++|+.|++++|.+. .+|..++.+++|++|++++|++. .+|..+ +.++
T Consensus       440 ~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~  514 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLE  514 (768)
T ss_dssp             GCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCT
T ss_pred             cCCCCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH-hcCC
Confidence            44445555544444432    23344444555555555555544 44445555555555555555544 445554 5555


Q ss_pred             CccEEecCCCCc-cccchHHhhhhcc
Q 048591          260 NLYTLDMPFSYI-DHTADEFTLHARN  284 (286)
Q Consensus       260 ~L~~L~l~~~~l-~~lP~~i~~L~~~  284 (286)
                      +|++|++++|++ +.+|..++++++|
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCC
Confidence            555555555554 3455555544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.08  E-value=8.1e-11  Score=110.65  Aligned_cols=107  Identities=9%  Similarity=-0.030  Sum_probs=54.7

Q ss_pred             EEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeec
Q 048591          164 VKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLN  243 (286)
Q Consensus       164 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~  243 (286)
                      ++.+.+..+....+..+..+++|+.|.+.++....    ..+..+..+++|+.|+|++|.+..+|..++.+++|++|+|+
T Consensus       234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCChhhccCCCCCEEECCCCccCC----CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence            44444444433322333345555555555555443    33444555555555555555555555555555555555555


Q ss_pred             cccccccchhHhhCCCCccEEecCCCCccccc
Q 048591          244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP  275 (286)
                      +|.+..+|..+ +.+++|++|++++|.+..+|
T Consensus       310 ~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          310 HNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             SSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred             CCCCCccCccc-ccCCCCCEEECCCCCCCCcC
Confidence            55555555555 55555555555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.07  E-value=3.2e-10  Score=106.59  Aligned_cols=111  Identities=16%  Similarity=0.075  Sum_probs=78.9

Q ss_pred             CCCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591          161 KKNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L  237 (286)
                      ...++.+.+..+.... + ..+..+++|++|.+.++....    ..+..|..+++|++|++++|.++.+|.. ++.+++|
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC----CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            3456777777666432 2 245577788888888777765    4456677888888888888888877765 4778888


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccc
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP  275 (286)
                      ++|++++|.+..+|+..++.+++|++|++++|.+..+|
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            88888888877766542278888888888888776655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.07  E-value=2.1e-10  Score=106.77  Aligned_cols=121  Identities=13%  Similarity=0.045  Sum_probs=100.0

Q ss_pred             CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccc
Q 048591          160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~  236 (286)
                      .+..++++.+..+....  +..+..+++|++|++.++....    ..+..|.++++|++|++++|.++.+| ..++.+++
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            45678899998887542  2245588999999999988764    44567889999999999999988766 67899999


Q ss_pred             cceeeeccccccccch-hHhhCCCCccEEecCCCCcc--ccchHHhhhhccC
Q 048591          237 LRYLKLNIPSLKILPS-SLLSNLLNLYTLDMPFSYID--HTADEFTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~-~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~~  285 (286)
                      |++|++++|+++.+|. .+ +++++|++|++++|.+.  ++|..++++++|+
T Consensus       102 L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  152 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             cccccccccccccCCCccc-cccccccEEecCCCccceecChhhhcccCCCC
Confidence            9999999999998887 56 99999999999999885  4789999888775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.07  E-value=1.8e-10  Score=104.34  Aligned_cols=122  Identities=16%  Similarity=0.042  Sum_probs=80.9

Q ss_pred             CCCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591          160 SKKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  236 (286)
                      .+..++++.+..+...  .+..+.++++|++|.+.++.....   ..+..|..+++|++|++++|.+..+ |..++.+++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            3456777777777643  234455777888888877765321   2345677777788888887777644 567777777


Q ss_pred             cceeeeccccccc-cchh--HhhCCCCccEEecCCCCcccc-chH-HhhhhccC
Q 048591          237 LRYLKLNIPSLKI-LPSS--LLSNLLNLYTLDMPFSYIDHT-ADE-FTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~-LP~~--i~~~L~~L~~L~l~~~~l~~l-P~~-i~~L~~~~  285 (286)
                      |++|++++|.+.. .|..  + +++++|++|++++|.+..+ |.. ++++++|+
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFF-KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTT-TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             CCEEeCCCCCCCccccCcccc-cCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            7777777777764 3443  5 7777777777777777554 444 56666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.07  E-value=3.9e-10  Score=106.02  Aligned_cols=115  Identities=17%  Similarity=0.060  Sum_probs=81.0

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ...++.|.+..+....++.+..+++|+.|.+.++....     + +.+..+++|+.|+|++|.+..+ ..++.+++|+.|
T Consensus        86 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L  158 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL  158 (605)
T ss_dssp             CTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE
T ss_pred             CCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-----C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEE
Confidence            45667777777665544455577777777777777653     1 3467777788888888877776 467777888888


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      +|++|.+..+++ + +.+++|+.|+|++|.+..+| .+..|++|+
T Consensus       159 ~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~  200 (605)
T 1m9s_A          159 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLR-ALAGLKNLD  200 (605)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCG-GGTTCTTCS
T ss_pred             ECcCCcCCCchh-h-ccCCCCCEEECcCCCCCCCh-HHccCCCCC
Confidence            888887777766 6 77888888888888777665 366666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.07  E-value=4.4e-10  Score=106.42  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=48.5

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccc--------ccceeeeccccccccchh
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLF--------LLRYLKLNIPSLKILPSS  253 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~--------~L~~L~L~~~~i~~LP~~  253 (286)
                      .+++|+.|.+.++....    ..+..+..+++|+.|++++|.++.+|..+....        +|++|++++|++..+|..
T Consensus       431 ~~~~L~~L~Ls~N~l~~----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  506 (636)
T 4eco_A          431 KGINVSSINLSNNQISK----FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD  506 (636)
T ss_dssp             CCCCEEEEECCSSCCCS----CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred             cCCCCCEEECcCCccCc----CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence            34456666666655543    222334445555555555555544444332211        455555555555555555


Q ss_pred             Hhh--CCCCccEEecCCCCccccchHHhhhhcc
Q 048591          254 LLS--NLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       254 i~~--~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      + +  .+++|++|++++|++..+|..++++++|
T Consensus       507 ~-~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L  538 (636)
T 4eco_A          507 F-RATTLPYLVGIDLSYNSFSKFPTQPLNSSTL  538 (636)
T ss_dssp             G-STTTCTTCCEEECCSSCCSSCCCGGGGCSSC
T ss_pred             h-hhccCCCcCEEECCCCCCCCcChhhhcCCCC
Confidence            5 4  5555555555555554455555544444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.06  E-value=3.2e-10  Score=102.55  Aligned_cols=104  Identities=20%  Similarity=0.122  Sum_probs=60.0

Q ss_pred             CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591          161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L  237 (286)
                      +..++.+.+..+....  +..+.++++|+.|.+.++....    ..+..|..+++|+.|+|++|.++.+|. .+..+++|
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  138 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL  138 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence            4556666666665432  1234466667777766666543    334556666666666666666666654 45666666


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCC
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPF  268 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~  268 (286)
                      ++|++++|.+..+|...|.++++|++|++++
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            6666666666655553324455555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=1.1e-10  Score=113.76  Aligned_cols=120  Identities=13%  Similarity=0.224  Sum_probs=95.8

Q ss_pred             CCCEEEEEEecCC--CcccccCCCCCCeeEEEEecCC-CCCCCCchhhhhhc-------CCCceEEEEeeCCCCccCch-
Q 048591          161 KKNVKRINVFYKQ--SDFVHFVDDDSHMHSLLYFTSK-SDHLDPIDWGIICL-------MLEFLRVLDLGSLVLIQYPS-  229 (286)
Q Consensus       161 ~~~~r~l~l~~~~--~~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~-------~l~~Lr~L~l~~~~l~~lp~-  229 (286)
                      ...++.+.+..+.  ...+..+.++++|+.|.+.++. ....   .+|..+.       .+++|+.|++++|.+..+|. 
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~---~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~  566 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA---QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS  566 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH---HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc---cchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence            4678999998876  4466667789999999999987 5310   1344444       44589999999999888998 


Q ss_pred             -hhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc-cC
Q 048591          230 -GIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR-NT  285 (286)
Q Consensus       230 -~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~-~~  285 (286)
                       .++.+++|++|++++|.+..+| .+ +++++|++|++++|.+..+|..++++++ |+
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE  622 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCC
T ss_pred             hhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCC
Confidence             8999999999999999888888 77 8899999999999988888888887776 54

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.05  E-value=6.9e-10  Score=96.37  Aligned_cols=120  Identities=12%  Similarity=0.094  Sum_probs=88.6

Q ss_pred             CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc
Q 048591          160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL  237 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  237 (286)
                      .+..++.+.+..+... .+ ..+..+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|..+.  ++|
T Consensus        50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L  123 (330)
T 1xku_A           50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL  123 (330)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred             CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence            3457788888877744 22 245588899999998888765    446778889999999999998888887665  678


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCcc---ccchHHhhhhccC
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID---HTADEFTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~---~lP~~i~~L~~~~  285 (286)
                      ++|++++|.+..+|...++++++|++|++++|.+.   ..|..+.++++|+
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            88888888887777654477888888888887663   3455566665553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.05  E-value=2.5e-10  Score=104.22  Aligned_cols=98  Identities=13%  Similarity=0.068  Sum_probs=47.8

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccch-hHhhCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPS-SLLSNLL  259 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~-~i~~~L~  259 (286)
                      ++++|++|.+.++....    ..+..|.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..++. .+ +.++
T Consensus        78 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~  152 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLN  152 (477)
T ss_dssp             TCTTCCEEECCSSCCCS----CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCT
T ss_pred             CCccCCEEECCCCcCCc----cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc-cCCC
Confidence            44445555554444432    2223344455555555555554432 3344555555555555555544433 33 5555


Q ss_pred             CccEEecCCCCccccch-HHhhhhcc
Q 048591          260 NLYTLDMPFSYIDHTAD-EFTLHARN  284 (286)
Q Consensus       260 ~L~~L~l~~~~l~~lP~-~i~~L~~~  284 (286)
                      +|++|++++|++..+|. .+.++++|
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGL  178 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred             CCCEEECCCCcCcccChhHhcccCCC
Confidence            66666666665555543 24444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.05  E-value=4.3e-10  Score=94.82  Aligned_cols=91  Identities=16%  Similarity=0.038  Sum_probs=41.7

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .+++|+.|.+.++....     .+. +..+++|+.|++++|.++.+|....  .+|++|++++|+++.+| .+ +.+++|
T Consensus        61 ~l~~L~~L~L~~N~i~~-----~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l-~~l~~L  130 (263)
T 1xeu_A           61 FFTNLKELHLSHNQISD-----LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SL-IHLKNL  130 (263)
T ss_dssp             GCTTCCEEECCSSCCCC-----CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GG-TTCTTC
T ss_pred             hCCCCCEEECCCCccCC-----Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hh-cCcccc
Confidence            44455555555444432     111 4445555555555555444443222  44555555555544443 24 455555


Q ss_pred             cEEecCCCCccccchHHhhhhc
Q 048591          262 YTLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       262 ~~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      ++|++++|++..+| .++.+++
T Consensus       131 ~~L~Ls~N~i~~~~-~l~~l~~  151 (263)
T 1xeu_A          131 EILSIRNNKLKSIV-MLGFLSK  151 (263)
T ss_dssp             CEEECTTSCCCBCG-GGGGCTT
T ss_pred             cEEECCCCcCCCCh-HHccCCC
Confidence            55555555544443 3444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.05  E-value=1.7e-10  Score=101.25  Aligned_cols=119  Identities=11%  Similarity=-0.014  Sum_probs=70.6

Q ss_pred             CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch--hhccccc
Q 048591          161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS--GIENLFL  236 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~--~i~~L~~  236 (286)
                      ...++.+.+..+....  +..+..+++|++|.+.++....    ..+..+..+++|++|++++|.++.+|.  .++.+++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN----LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS----CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc----CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            4556666666665331  2234466777777777766653    333446666777777777776666665  5666666


Q ss_pred             cceeeeccc-cccccch-hHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591          237 LRYLKLNIP-SLKILPS-SLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN  284 (286)
Q Consensus       237 L~~L~L~~~-~i~~LP~-~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~  284 (286)
                      |++|++++| .+..+|. .+ +++++|++|++++|.+..+ |..++++++|
T Consensus       151 L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             CcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            777776666 3555543 34 6666666666666666433 5555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.05  E-value=1.3e-10  Score=99.77  Aligned_cols=117  Identities=20%  Similarity=0.163  Sum_probs=69.7

Q ss_pred             CCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccc
Q 048591          162 KNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~  238 (286)
                      ..++.+.+..+...  .+..+..+++|++|.+.++.....   ..+..+..+++|+.|++++|.++.+ |..++.+++|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            45555655555432  222333556666666665554310   1345566677777777777776654 45667777777


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCcc-ccchHHhhh
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID-HTADEFTLH  281 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L  281 (286)
                      +|++++|.+..+|...++.+++|++|++++|.+. ..|..+..+
T Consensus       203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            7777777777666533277777777777777763 344445444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.04  E-value=6.2e-10  Score=97.21  Aligned_cols=115  Identities=19%  Similarity=0.064  Sum_probs=69.1

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ...++.+.+..+.......+..+++|++|.+.++....     + +.+..+++|+.|++++|.+..+|. +..+++|++|
T Consensus        65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSL  137 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence            45566666666553322224466666666666665543     1 246666677777777766666665 6666677777


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      ++++|.....+..+ +.+++|++|++++|.+..+|. +.+++++
T Consensus       138 ~l~~n~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~l~~L  179 (347)
T 4fmz_A          138 NLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP-IANLTDL  179 (347)
T ss_dssp             ECTTCTTCCCCGGG-TTCTTCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred             ECCCCCCcccccch-hhCCCCcEEEecCCCcCCchh-hccCCCC
Confidence            77766433333345 677777777777776666554 5555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.04  E-value=4.5e-10  Score=108.64  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=102.6

Q ss_pred             CCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccccc
Q 048591          161 KKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L  237 (286)
                      ...++.+.+..+...  .+..+..+++|++|.+.++....    ..|..+..+++|++|++++|.+. .+|..++.+++|
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC----cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            456788888777643  55556688999999999999876    56788999999999999999988 899999999999


Q ss_pred             ceeeecccccc-ccchhHhhCCCCccEEecCCCCc-cccchHHhhhhc
Q 048591          238 RYLKLNIPSLK-ILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHAR  283 (286)
Q Consensus       238 ~~L~L~~~~i~-~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~  283 (286)
                      ++|++++|++. .+|..+ +++++|++|++++|.+ +.+|..++++..
T Consensus       517 ~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~  563 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSG  563 (768)
T ss_dssp             CEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred             CEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccc
Confidence            99999999987 889999 9999999999999998 689998887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.04  E-value=1.4e-10  Score=99.63  Aligned_cols=108  Identities=19%  Similarity=0.153  Sum_probs=62.6

Q ss_pred             CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591          161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~  238 (286)
                      +..++++.+..+... ++. .+..+++|+.|.+.++......  ..+..+..+++|++|++++|.+..+|..+..+++|+
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE  104 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE--EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc--CcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence            456777777776643 332 2346777778777777654211  113444456666666666666666665566666666


Q ss_pred             eeeeccccccccch--hHhhCCCCccEEecCCCCc
Q 048591          239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l  271 (286)
                      +|++++|.+..+|.  .+ +.+++|++|++++|.+
T Consensus       105 ~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l  138 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHT  138 (306)
T ss_dssp             EEECTTSEEESSTTTTTT-TTCTTCCEEECTTSCC
T ss_pred             EEECCCCcccccccchhh-hhccCCCEEECCCCcC
Confidence            66666666555543  34 5555555555555555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.03  E-value=4.2e-10  Score=109.90  Aligned_cols=121  Identities=20%  Similarity=0.115  Sum_probs=64.0

Q ss_pred             CCCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591          160 SKKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  236 (286)
                      .+..++.+.+..+...  .+..+..+++|+.|.+.++.....   ..+..|.++++|++|+|++|.+..+ |..++.+++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~---i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE---ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc---cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            3455666666665533  123344566666666666533210   2244556666666666666665533 455566666


Q ss_pred             cceeeeccccccc-cchh--HhhCCCCccEEecCCCCcccc--chHHhhhhcc
Q 048591          237 LRYLKLNIPSLKI-LPSS--LLSNLLNLYTLDMPFSYIDHT--ADEFTLHARN  284 (286)
Q Consensus       237 L~~L~L~~~~i~~-LP~~--i~~~L~~L~~L~l~~~~l~~l--P~~i~~L~~~  284 (286)
                      |++|+|++|.+.. +|..  + +++++|++|++++|.+..+  |..+++|++|
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYF-RNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCC-SSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             cCEeeCcCCCCCcccccCccc-cccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            6666666665543 3333  4 5556666666666555333  2345555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.03  E-value=4e-10  Score=102.69  Aligned_cols=113  Identities=14%  Similarity=0.063  Sum_probs=69.9

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK  241 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~  241 (286)
                      ..++.+.+..+.....+.+..+++|+.|.+.++....     .++ +..+++|+.|++++|.+..+|. ++.+++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-----ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-----chh-hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence            3455666655553322233356677777777766653     222 6667777777777777666665 66777777777


Q ss_pred             eccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      +++|.+..+|. + +++++|++|++++|.+..+|. ++++++|
T Consensus       119 L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L  158 (466)
T 1o6v_A          119 LFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSL  158 (466)
T ss_dssp             CCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTC
T ss_pred             CCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcc
Confidence            77777766665 5 677777777777776655553 4444433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.03  E-value=2.4e-10  Score=105.42  Aligned_cols=111  Identities=19%  Similarity=0.126  Sum_probs=78.4

Q ss_pred             EEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeec
Q 048591          166 RINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLN  243 (286)
Q Consensus       166 ~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~  243 (286)
                      .+.+..+.. .++..+  .++++.|.+.++....    ..+..+..+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus         4 ~l~ls~n~l~~ip~~~--~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDL--SQKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             EEECTTSCCSSCCCSC--CTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             eEecCCCCcccccccc--cccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            445555442 234333  2678888888877764    4456777888888888888887765 5677888888888888


Q ss_pred             cccccccchhHhhCCCCccEEecCCCCccc--cchHHhhhhccC
Q 048591          244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDH--TADEFTLHARNT  285 (286)
Q Consensus       244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~~~  285 (286)
                      +|+++.+|..   .+++|++|++++|.+..  +|..++++++|+
T Consensus        78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcce
Confidence            8888877775   67888888888887743  567777777664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.02  E-value=2.6e-10  Score=107.06  Aligned_cols=106  Identities=12%  Similarity=-0.033  Sum_probs=48.2

Q ss_pred             CCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccccc
Q 048591          161 KKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L  237 (286)
                      +..++++.+..+... . +..+.++++|++|.+.++....    ..+..|.++++|+.|++++|.+..+ |..++.+++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            344555555555432 1 2233355555555555554432    2334444555555555555544422 3344444444


Q ss_pred             ceeeecccccccc-chhHhhCCCCccEEecCCCCc
Q 048591          238 RYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       238 ~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l  271 (286)
                      ++|++++|.+..+ |..+ +++++|++|++++|.+
T Consensus       108 ~~L~L~~n~i~~l~~~~~-~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHI  141 (606)
T ss_dssp             CEEECTTSCCSCGGGSCC-TTCTTCCEEECCSSCC
T ss_pred             cEeeccccCcccCCcchh-ccCCcccEEECCCCcc
Confidence            4444444444444 2233 4444444444444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.02  E-value=5.4e-10  Score=104.19  Aligned_cols=107  Identities=17%  Similarity=0.117  Sum_probs=81.2

Q ss_pred             CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc
Q 048591          160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL  237 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  237 (286)
                      .+..++.+.+..+... .+ ..+..+++|++|.+.++....    ..+..|..+++|++|++++|.++.+|..  .+++|
T Consensus        50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            3467888888877744 22 355678888888888887764    4466788888888888888888888866  78888


Q ss_pred             ceeeeccccccccc--hhHhhCCCCccEEecCCCCccc
Q 048591          238 RYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       238 ~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~  273 (286)
                      ++|++++|.+..+|  ..+ +++++|++|++++|.+..
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCT
T ss_pred             CEEECCCCCccccCchHhh-cccCcccEEecCCCcccc
Confidence            88888888887664  667 888888888888887754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.02  E-value=5.9e-10  Score=102.27  Aligned_cols=117  Identities=14%  Similarity=0.026  Sum_probs=97.2

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhc-cccccce
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIE-NLFLLRY  239 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~-~L~~L~~  239 (286)
                      ..++.+.+..+........ .+++|++|.+.++....    ..+..+..+++|+.|++++|.++. .|..++ .+++|++
T Consensus        99 ~~L~~L~L~~N~l~~~~~~-~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC-CCSSCEEEECCSSCCCS----GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CCcCEEECcCCcCCCCCcc-ccCCCCEEECCCCCCCC----CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence            5677788877765433222 57899999999999876    566778899999999999999885 556665 7999999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      |+|++|.+..+|..  ..+++|++|++++|.+..+|+.++.+++|+
T Consensus       174 L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~  217 (487)
T 3oja_A          174 LNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVT  217 (487)
T ss_dssp             EECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred             EecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence            99999999999775  469999999999999999999898888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.01  E-value=1.6e-10  Score=99.76  Aligned_cols=120  Identities=14%  Similarity=0.098  Sum_probs=77.5

Q ss_pred             CCCEEEEEEecCCCc----ccccC--CCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhc
Q 048591          161 KKNVKRINVFYKQSD----FVHFV--DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIE  232 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~----~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~  232 (286)
                      ...++.+.+..+...    .+...  ..+++|+.|.+.++...... ......+..+++|+.|++++|.+...+  ..+.
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH-HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH-HHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            445666666665521    12222  35667777777666654210 012234456778888888888877544  3455


Q ss_pred             cccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          233 NLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       233 ~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      .+++|++|++++|.++.+|..+ .  ++|++|++++|++..+|. +..+++|+
T Consensus       251 ~l~~L~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~  299 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQVPKGL-P--AKLSVLDLSYNRLDRNPS-PDELPQVG  299 (312)
T ss_dssp             CCTTCCEEECTTSCCSSCCSSC-C--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred             hcCCCCEEECCCCccChhhhhc-c--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence            6778888888888888888877 5  788888888888877776 66666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.00  E-value=7e-10  Score=95.96  Aligned_cols=119  Identities=10%  Similarity=-0.013  Sum_probs=88.6

Q ss_pred             CCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhh-cCCCceEEEEeeCCCCccCchhhcccccc
Q 048591          161 KKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIIC-LMLEFLRVLDLGSLVLIQYPSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  237 (286)
                      ...++.+.+..+.....  ..+..+++|+.|.+.++....    ..+..+ ..+++|++|++++|.++.+|.. ..+++|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L  193 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL  193 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----ccHHHHhhccCcCCEEECCCCcCcccccc-cccccC
Confidence            34567777777664322  233367788888888877754    233333 4678888888888888877643 358889


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++|++++|.++.+|..+ +.+++|++|++++|.+..+|..+..+++++
T Consensus       194 ~~L~Ls~N~l~~l~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~  240 (317)
T 3o53_A          194 KTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKALRFSQNLE  240 (317)
T ss_dssp             CEEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred             CEEECCCCcCCcchhhh-cccCcccEEECcCCcccchhhHhhcCCCCC
Confidence            99999999999998888 899999999999999888888887777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.00  E-value=8.3e-10  Score=96.00  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=86.1

Q ss_pred             CCCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc
Q 048591          160 SKKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL  237 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L  237 (286)
                      ....++.+.+..+... . +..+..+++|++|.+.++....    ..+..+..+++|+.|++++|.++.+|..+.  ++|
T Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L  125 (332)
T 2ft3_A           52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL  125 (332)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred             CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence            3457888888887744 2 2345688999999999888764    456788899999999999999988887776  789


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCcc
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~  272 (286)
                      ++|++++|.+..+|...++.+++|++|++++|.+.
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            99999999998888764488999999999998774

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.00  E-value=6.2e-10  Score=100.98  Aligned_cols=122  Identities=16%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCc---------------------hhhhhhcCCCceEEE
Q 048591          161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPI---------------------DWGIICLMLEFLRVL  217 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~---------------------~~~~~~~~l~~Lr~L  217 (286)
                      ...++.+.+..+... .+ ..+..+++|+.|.+.++........                     ..+..+..+++|+.|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            345666666665533 22 1233566677776666655421100                     001123344444444


Q ss_pred             EeeCCCCccCchhhccccccceeeecccccccc-chhHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591          218 DLGSLVLIQYPSGIENLFLLRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN  284 (286)
Q Consensus       218 ~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~  284 (286)
                      ++++|.++.+| .+..+++|++|++++|.+..+ |..+ +++++|++|++++|++..+ |..+.++++|
T Consensus       202 ~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          202 NLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             ECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ECCCCcccccc-cccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            44444444443 244444555555555555444 2233 5555555555555555333 3334444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.00  E-value=7.5e-10  Score=96.15  Aligned_cols=109  Identities=17%  Similarity=0.068  Sum_probs=68.6

Q ss_pred             CCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccce
Q 048591          162 KNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRY  239 (286)
Q Consensus       162 ~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~  239 (286)
                      ..++.+.+..+... ++...  .++|+.|.+.++....    ..+..+..+++|+.|++++|.++.++ ..++.+++|++
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             CCcCEEECCCCccccCCccc--cccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence            34555555544422 22211  2556666666555543    33456677777777777777776554 35777777777


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE  277 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~  277 (286)
                      |++++|.+..+|..+ +.+++|++|++++|++..+|..
T Consensus       245 L~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          245 LHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             EECCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCCTT
T ss_pred             EECCCCcCccCChhh-ccCCCcCEEECCCCcCCccChh
Confidence            777777777777777 7777777777777777666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.00  E-value=7.9e-10  Score=103.91  Aligned_cols=116  Identities=17%  Similarity=0.083  Sum_probs=96.8

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      ....++.|.+..+.......+..+++|+.|.+.++....     + +.+..+++|+.|+|++|.+..+| .++.+++|+.
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  135 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES  135 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-----C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSE
T ss_pred             cCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-----C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccCE
Confidence            456788899988875433335589999999999998864     2 36889999999999999999875 5889999999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      |+|++|.+..+ ..+ +.+++|+.|+|++|.+..+|+ +..+++|+
T Consensus       136 L~Ls~N~l~~l-~~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~  178 (605)
T 1m9s_A          136 LYLGNNKITDI-TVL-SRLTKLDTLSLEDNQISDIVP-LAGLTKLQ  178 (605)
T ss_dssp             EECCSSCCCCC-GGG-GSCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             EECCCCccCCc-hhh-cccCCCCEEECcCCcCCCchh-hccCCCCC
Confidence            99999999988 567 999999999999999987776 77777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.99  E-value=1.9e-09  Score=94.14  Aligned_cols=117  Identities=18%  Similarity=0.098  Sum_probs=82.8

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ...++.+.+..+.......+..+++|++|.+.++....     . +.+..+++|+.|++++|.++.+| .++.+++|++|
T Consensus       220 ~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L  292 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSL  292 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             CCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEE
Confidence            34566677766654433334467777777777776653     1 45777888888888888888775 47788888888


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++++|.+...+...++.+++|++|++++|.+..+|+ +..+++|+
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~  336 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMD  336 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCS
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccc
Confidence            888888775544333888888888888888877766 66666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.99  E-value=3.9e-10  Score=98.06  Aligned_cols=113  Identities=13%  Similarity=0.012  Sum_probs=92.2

Q ss_pred             EEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceee
Q 048591          164 VKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLK  241 (286)
Q Consensus       164 ~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~  241 (286)
                      ++.+.+..+.. .++..+  .++++.|.+.++....    ..+..+..+++|+.|++++|.++.+ |..++.+++|++|+
T Consensus        35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             CCEEECCCCCccccCCCC--CCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            45566655543 344333  4789999999998764    4456799999999999999999866 67899999999999


Q ss_pred             eccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      +++|.+..+|..+ .  ++|++|++++|.+..+|.. +.++++|+
T Consensus       109 L~~n~l~~l~~~~-~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A          109 ISKNHLVEIPPNL-P--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             CCSSCCCSCCSSC-C--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             CCCCcCCccCccc-c--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            9999999999988 5  8999999999999888865 67777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.99  E-value=1.2e-09  Score=101.84  Aligned_cols=122  Identities=12%  Similarity=0.096  Sum_probs=86.0

Q ss_pred             CCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchh-hcc---
Q 048591          161 KKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSG-IEN---  233 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~-i~~---  233 (286)
                      ...++.+.+..+...  .+..+..+++|+.|.+.++......  ..+..+..+++|+.|++++|.+.. +|.. +..   
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            456777777776633  3444557778888888777765422  334556777777777777777664 5543 211   


Q ss_pred             ------------------c-cccceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          234 ------------------L-FLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       234 ------------------L-~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                                        + ++|++|++++|+++.+|..+ +.+++|++|++++|++..+|.. +..+++++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  500 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQ  500 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTT-TSSCCCSEEECCSSCCCCCCTTSTTTCTTCC
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhh-cCCCCCCEEECCCCCCCCCCHHHHhcCCCCC
Confidence                              2 57888888888888899988 7899999999999998888887 77777664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.99  E-value=9.5e-12  Score=100.37  Aligned_cols=106  Identities=15%  Similarity=0.080  Sum_probs=79.5

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK  241 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~  241 (286)
                      ..++.+.+..+.....+.+..+++|+.|.+.++....     ++..+..+++|+.|++++|.++.+| .++.+++|++|+
T Consensus        48 ~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCCCccccccccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence            4566677766653322244477888888888887763     4456666788889999998888877 688888999999


Q ss_pred             eccccccccch--hHhhCCCCccEEecCCCCcccc
Q 048591          242 LNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHT  274 (286)
Q Consensus       242 L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~l  274 (286)
                      +++|.+..+|.  .+ +.+++|++|++++|.+...
T Consensus       122 l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          122 MSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ESEEECCCHHHHHHH-TTTTTCSEEEECSCHHHHH
T ss_pred             CCCCcCCchhHHHHH-hcCCCCCEEEecCCccccc
Confidence            99988888775  66 8889999999999887443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.98  E-value=7.7e-10  Score=100.04  Aligned_cols=98  Identities=26%  Similarity=0.264  Sum_probs=56.9

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCch-hhccccccceeeeccccccccchhHhhCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPS-GIENLFLLRYLKLNIPSLKILPSSLLSNLL  259 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~-~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~  259 (286)
                      .+++|+.|.+.++....    ..+..|..+++|+.|++++|. +..+|. .+..+++|++|++++|+++.+|. + ..++
T Consensus       134 ~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~  207 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIES----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-L-TPLI  207 (440)
T ss_dssp             SCSSCCEEECCSCCCCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-C-TTCS
T ss_pred             ccccCceeeCCCCcccc----cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-c-CCCc
Confidence            44455555555544432    223345555555555555533 444442 45667777777777777777764 5 6777


Q ss_pred             CccEEecCCCCcccc-chHHhhhhccC
Q 048591          260 NLYTLDMPFSYIDHT-ADEFTLHARNT  285 (286)
Q Consensus       260 ~L~~L~l~~~~l~~l-P~~i~~L~~~~  285 (286)
                      +|++|++++|.+..+ |..+.++++|+
T Consensus       208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~  234 (440)
T 3zyj_A          208 KLDELDLSGNHLSAIRPGSFQGLMHLQ  234 (440)
T ss_dssp             SCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCEEECCCCccCccChhhhccCccCC
Confidence            777777777777554 45566665553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.97  E-value=1e-09  Score=100.12  Aligned_cols=120  Identities=20%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccccc
Q 048591          161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L  237 (286)
                      ...++.+.+..+... .+. .+..+++|+.|.+.++....    ..+..+..+++|+.|++++|.+..+ |..++.+++|
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI----LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc----CChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence            345666666555432 221 23356666666666665543    3344556666666666666665533 3456666666


Q ss_pred             ceeeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhcc
Q 048591          238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHARN  284 (286)
Q Consensus       238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~~  284 (286)
                      ++|++++|++..+|...++++++|+.|++++|.+..+|. .+.++++|
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L  202 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL  202 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence            666666666666665433666666666666666644433 34444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.96  E-value=2.9e-11  Score=97.51  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=86.3

Q ss_pred             cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCC
Q 048591          179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNL  258 (286)
Q Consensus       179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L  258 (286)
                      .+..+++|+.|.+.++....     ++ .+..+++|+.|++++|.++.+|..++.+++|++|++++|.+..+| .+ +.+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l  114 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKL  114 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccC
Confidence            44478999999999988764     33 778899999999999999999998989999999999999999988 67 999


Q ss_pred             CCccEEecCCCCccccch--HHhhhhccC
Q 048591          259 LNLYTLDMPFSYIDHTAD--EFTLHARNT  285 (286)
Q Consensus       259 ~~L~~L~l~~~~l~~lP~--~i~~L~~~~  285 (286)
                      ++|++|++++|.+..+|.  .+.++++|+
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence            999999999999988775  677777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.96  E-value=5.7e-10  Score=103.43  Aligned_cols=120  Identities=12%  Similarity=-0.007  Sum_probs=93.1

Q ss_pred             CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc--Cchhhcccc
Q 048591          160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ--YPSGIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~--lp~~i~~L~  235 (286)
                      ....++.+.+..+....  +..+..+++|++|++.++....    ..+..+..+++|++|++++|.++.  .|..++.++
T Consensus        48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT  123 (549)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred             cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence            45678888888877442  2345688899999999988865    455668899999999999998874  467788899


Q ss_pred             ccceeeecccc-ccccch-hHhhCCCCccEEecCCCCcc-ccchHHhhhhcc
Q 048591          236 LLRYLKLNIPS-LKILPS-SLLSNLLNLYTLDMPFSYID-HTADEFTLHARN  284 (286)
Q Consensus       236 ~L~~L~L~~~~-i~~LP~-~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~~  284 (286)
                      +|++|++++|. +..+|. .+ +++++|++|++++|.+. ..|..+++++++
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             CccEEECCCCccccccCHhhh-hcccccCeeeccCCcccccChhhhhccccC
Confidence            99999999887 777875 56 88899999999888884 467777666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.94  E-value=3.1e-10  Score=97.82  Aligned_cols=74  Identities=18%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             hcCCCceEEEEeeCCCCccC-chhhccc---cccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591          208 CLMLEFLRVLDLGSLVLIQY-PSGIENL---FLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       208 ~~~l~~Lr~L~l~~~~l~~l-p~~i~~L---~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      +..+++|+.|++++|.+... |..++.+   ++|++|++++|+++.+|..+ .  ++|++|++++|++..+|. +..+++
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~~-~~~l~~  295 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAPQ-PDELPE  295 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCCC-TTSCCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCch-hhhCCC
Confidence            45667777777777777654 6666665   47777777777777777766 4  677777777777766654 445554


Q ss_pred             cC
Q 048591          284 NT  285 (286)
Q Consensus       284 ~~  285 (286)
                      |+
T Consensus       296 L~  297 (310)
T 4glp_A          296 VD  297 (310)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.94  E-value=1e-09  Score=102.94  Aligned_cols=121  Identities=12%  Similarity=-0.039  Sum_probs=83.9

Q ss_pred             CCCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591          160 SKKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL  236 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~  236 (286)
                      ....++.+.+..+...  .+..+.++++|++|.+.++....    ..+..+..+++|++|++++|.++.+ |..++.+++
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF----MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE----ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc----cChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            3456777777777643  23445577888888888777654    4456777888888888888887766 466777888


Q ss_pred             cceeeeccccccccc-hhHhhCCCCccEEecCCCCcccc-chHHhhhhccC
Q 048591          237 LRYLKLNIPSLKILP-SSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARNT  285 (286)
Q Consensus       237 L~~L~L~~~~i~~LP-~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~~  285 (286)
                      |++|++++|.+..++ +.+ ..+++|++|++++|.+..+ |..++.+++++
T Consensus       131 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             CCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             ccEEECCCCcccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            888888888777652 223 3478888888888877555 45566666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.93  E-value=1.3e-09  Score=99.22  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK  241 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~  241 (286)
                      ..++.+.+..+.....+ +..+++|+.|.+.++....     .  .+..+++|++|++++|.++.+|  ++.+++|++|+
T Consensus        64 ~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-----~--~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-----L--DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-----C--CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-----e--ecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence            34444444444422221 2344445555544444432     1  1444455555555555554443  44555555555


Q ss_pred             eccccccccchhHhhCCCCccEEecCCC
Q 048591          242 LNIPSLKILPSSLLSNLLNLYTLDMPFS  269 (286)
Q Consensus       242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~  269 (286)
                      +++|+++.+|  + +++++|++|++++|
T Consensus       134 l~~N~l~~l~--l-~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          134 CARNTLTEID--V-SHNTQLTELDCHLN  158 (457)
T ss_dssp             CTTSCCSCCC--C-TTCTTCCEEECTTC
T ss_pred             CCCCccceec--c-ccCCcCCEEECCCC
Confidence            5555554443  3 45555555555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.93  E-value=1.7e-09  Score=102.83  Aligned_cols=70  Identities=26%  Similarity=0.409  Sum_probs=44.3

Q ss_pred             hcCCCceEEEEeeCCCCccCch-hhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591          208 CLMLEFLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE  277 (286)
Q Consensus       208 ~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~  277 (286)
                      +..+++|++|++++|.++.+|. .++.+++|++|++++|+++.+|...|..+++|++|++++|++..+|..
T Consensus       532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence            4555666666666666666664 356666666666666666666666545666666666666666555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.92  E-value=2.5e-10  Score=98.42  Aligned_cols=118  Identities=14%  Similarity=0.040  Sum_probs=76.2

Q ss_pred             CCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh----hccc
Q 048591          161 KKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG----IENL  234 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~----i~~L  234 (286)
                      ...++.+.+..+...  .+..+..+++|++|++.+|.............+..+++|++|++++|.++.+|..    ++.+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            446677777776643  2234446777777777777653210000112235677788888888877665542    4567


Q ss_pred             cccceeeecccccccc-chhHhhCC---CCccEEecCCCCccccchHHh
Q 048591          235 FLLRYLKLNIPSLKIL-PSSLLSNL---LNLYTLDMPFSYIDHTADEFT  279 (286)
Q Consensus       235 ~~L~~L~L~~~~i~~L-P~~i~~~L---~~L~~L~l~~~~l~~lP~~i~  279 (286)
                      ++|++|++++|.+..+ |..+ +.+   ++|++|++++|++.++|..+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~~~  271 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQVPKGLP  271 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred             CCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCchhhhhc
Confidence            7888888888887766 7777 666   588888888888777776553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.90  E-value=9.7e-10  Score=94.83  Aligned_cols=110  Identities=12%  Similarity=0.034  Sum_probs=87.4

Q ss_pred             CCCEEEEEEecCCCc--ccccC--CCCCCeeEEEEecCCCCCCCCchhhhhhcCC-----CceEEEEeeCCCCccCc-hh
Q 048591          161 KKNVKRINVFYKQSD--FVHFV--DDDSHMHSLLYFTSKSDHLDPIDWGIICLML-----EFLRVLDLGSLVLIQYP-SG  230 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~--~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~l~~lp-~~  230 (286)
                      ...++++.+..+...  .+..+  ..+++|+.|.+.++....    . +..+..+     ++|++|++++|.+..+| ..
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~  168 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT----R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ  168 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS----S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc----h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence            457888999888743  44443  589999999999998875    2 4455555     89999999999999777 78


Q ss_pred             hccccccceeeeccccccc---cchhH-hhCCCCccEEecCCCCccccc
Q 048591          231 IENLFLLRYLKLNIPSLKI---LPSSL-LSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       231 i~~L~~L~~L~L~~~~i~~---LP~~i-~~~L~~L~~L~l~~~~l~~lP  275 (286)
                      ++.+++|++|++++|++..   +|..+ ++.+++|++|++++|++..+|
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  217 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS  217 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence            9999999999999998643   34433 278999999999999997554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.89  E-value=5.1e-09  Score=95.29  Aligned_cols=61  Identities=31%  Similarity=0.322  Sum_probs=26.8

Q ss_pred             hcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591          208 CLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       208 ~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      +..+++|+.|++++|.+..+|. ++.+++|++|++++|++..+|. + +.+++|+.|++++|++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-I-SNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-G-GGCTTCSEEECCSSCC
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-h-cCCCCCCEEECcCCcC
Confidence            3444444444444444444433 4444444444444444444433 3 4444444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.89  E-value=2.3e-09  Score=99.95  Aligned_cols=107  Identities=12%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc-----
Q 048591          163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL-----  237 (286)
Q Consensus       163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L-----  237 (286)
                      .++.+.+..|.......  .+++|+.|.+.+|....     +|. +.  ++|+.|++++|.++.+|. ++.  +|     
T Consensus       141 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~  207 (571)
T 3cvr_A          141 LLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEE  207 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEECCSSCCSSCCC-CC----------
T ss_pred             cccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccc
Confidence            44555555444321111  34566666666666543     222 33  678888888888887777 554  66     


Q ss_pred             --ceeeeccccccccchhHhhCCCCccEEecCCCCc-cccchHHhhhhc
Q 048591          238 --RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHAR  283 (286)
Q Consensus       238 --~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~  283 (286)
                        ++|+|++|.|+.+|..+ +++++|++|++++|.+ ..+|..+++++.
T Consensus       208 ~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          208 TEIFFRCRENRITHIPENI-LSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCEEEECCSSCCCCCCGGG-GGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             cceEEecCCCcceecCHHH-hcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence              88888888888888888 7788888888888887 567777777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.88  E-value=2.4e-09  Score=99.82  Aligned_cols=106  Identities=14%  Similarity=0.076  Sum_probs=77.5

Q ss_pred             CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591          163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL  242 (286)
Q Consensus       163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L  242 (286)
                      .++.+.+..|.....+.  .+++|+.|.+.+|....     +|.   .+++|+.|++++|.++.+|. ++  ++|++|+|
T Consensus       121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDV  187 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC
T ss_pred             CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEEC
Confidence            55566666555332111  46677777777776653     222   56788899999998888887 65  88999999


Q ss_pred             ccccccccchhHhhCCCCc-------cEEecCCCCccccchHHhhhhccC
Q 048591          243 NIPSLKILPSSLLSNLLNL-------YTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       243 ~~~~i~~LP~~i~~~L~~L-------~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++|+|+.+|. + +.  +|       ++|++++|++..+|..++++++|+
T Consensus       188 s~N~L~~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~  233 (571)
T 3cvr_A          188 STNLLESLPA-V-PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTC  233 (571)
T ss_dssp             CSSCCSSCCC-C-C----------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred             cCCCCCchhh-H-HH--hhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence            9999999998 7 65  77       999999999999999998887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.87  E-value=3.3e-09  Score=103.64  Aligned_cols=117  Identities=17%  Similarity=0.018  Sum_probs=95.8

Q ss_pred             CCCCEEEEEEecCCC--cc-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchh--hcc
Q 048591          160 SKKNVKRINVFYKQS--DF-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSG--IEN  233 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~--~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~--i~~  233 (286)
                      ....++.+.+..+..  .+ +..+.++++|++|.+.++....    ..+..|.++++|+.|+|++|.+.. .|..  +++
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            467789999988842  23 4456689999999999998865    557889999999999999999874 5655  899


Q ss_pred             ccccceeeeccccccccc--hhHhhCCCCccEEecCCCCc-cccchHHhhh
Q 048591          234 LFLLRYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYI-DHTADEFTLH  281 (286)
Q Consensus       234 L~~L~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L  281 (286)
                      +++|++|++++|.+..++  ..+ +++++|++|++++|.+ ...|..++.+
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~-~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSF-GKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGG-GTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             cCCCCEEECCCCcccccccchhH-hhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            999999999999988763  467 9999999999999988 4466777666

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.86  E-value=2.1e-09  Score=93.93  Aligned_cols=93  Identities=17%  Similarity=0.037  Sum_probs=78.0

Q ss_pred             cccccCCCCCCeeEEEEec-CCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccch
Q 048591          175 DFVHFVDDDSHMHSLLYFT-SKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPS  252 (286)
Q Consensus       175 ~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~  252 (286)
                      .+|. +..+++|+.|.+.+ |.+..    ..+..|..+++|+.|+|++|.|+.+| ..++.|++|++|+|++|+|..+|.
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCC----cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            4565 76888999999996 88765    55578999999999999999999776 467999999999999999999999


Q ss_pred             hHhhCCCCccEEecCCCCccc
Q 048591          253 SLLSNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       253 ~i~~~L~~L~~L~l~~~~l~~  273 (286)
                      .+|..+ .|++|+|.+|.+.-
T Consensus        98 ~~~~~~-~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           98 KTVQGL-SLQELVLSGNPLHC  117 (347)
T ss_dssp             TTTCSC-CCCEEECCSSCCCC
T ss_pred             HHcccC-CceEEEeeCCCccC
Confidence            883444 49999999998743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=3.6e-09  Score=92.44  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             hhhhhhcCCCceEEEEeeC-CCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhh
Q 048591          203 DWGIICLMLEFLRVLDLGS-LVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTL  280 (286)
Q Consensus       203 ~~~~~~~~l~~Lr~L~l~~-~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~  280 (286)
                      .+|. +..+.+|+.|+|++ |.++.+| ..++.|.+|++|+|++|+|+.+|+..|++|++|++|+|++|++..+|.++..
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            4556 88899999999996 8899887 5689999999999999999988776559999999999999999888876544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.79  E-value=5.7e-09  Score=94.89  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=93.6

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ...++.+.+..+...-.+.+..+++|+.|.+.++....     .+  +..+++|++|++++|.++.+|  ++.+++|++|
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-----LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-----Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence            46788999988875433355589999999999998865     22  789999999999999999886  8899999999


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++++|+++.+|  + +++++|++|++++|++..+|  ++++++|+
T Consensus       112 ~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~  151 (457)
T 3bz5_A          112 NCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLT  151 (457)
T ss_dssp             ECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCC
T ss_pred             ECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCC
Confidence            99999999987  7 99999999999999998776  66666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.78  E-value=1.2e-09  Score=94.76  Aligned_cols=100  Identities=15%  Similarity=0.061  Sum_probs=54.1

Q ss_pred             CCCCeeEEEEecC-CCCCCCCchhhhhhcCCCceEEEEeeCC-CCcc--Cchhhcccc-ccceeeeccccc----cccch
Q 048591          182 DDSHMHSLLYFTS-KSDHLDPIDWGIICLMLEFLRVLDLGSL-VLIQ--YPSGIENLF-LLRYLKLNIPSL----KILPS  252 (286)
Q Consensus       182 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~~--lp~~i~~L~-~L~~L~L~~~~i----~~LP~  252 (286)
                      .+++|++|.+.++ ....   ..++..+..+++|+.|++++| .++.  +|..++.++ +|++|++++|.+    ..+|.
T Consensus       140 ~~~~L~~L~L~~~~~l~~---~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSE---FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             TCTTCSEEECTTCBSCCH---HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             cCCCCCEEECCCCCCCCH---HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence            4555555555554 2211   013444555666666666666 5552  455555666 666666666632    34555


Q ss_pred             hHhhCCCCccEEecCCCC-c-cccchHHhhhhccC
Q 048591          253 SLLSNLLNLYTLDMPFSY-I-DHTADEFTLHARNT  285 (286)
Q Consensus       253 ~i~~~L~~L~~L~l~~~~-l-~~lP~~i~~L~~~~  285 (286)
                      .+ +++++|++|++++|. + ...|..++++++|+
T Consensus       217 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          217 LV-RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             HH-HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             HH-hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            55 666666666666665 3 34555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.77  E-value=1.4e-08  Score=95.75  Aligned_cols=89  Identities=18%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCcc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY  262 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~  262 (286)
                      +++|++|.+.+|....     ++   ..+++|+.|++++|.++.+|.   .+++|++|++++|.|+.+|..+ +++++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l-~~l~~L~  287 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL-IHLSSET  287 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG-GGSCTTC
T ss_pred             CCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH-hhccccC
Confidence            3567777777766543     22   456788889999988888887   6678999999999999999988 9999999


Q ss_pred             EEecCCCCc-cccchHHhhhhc
Q 048591          263 TLDMPFSYI-DHTADEFTLHAR  283 (286)
Q Consensus       263 ~L~l~~~~l-~~lP~~i~~L~~  283 (286)
                      .|++++|.+ ...|..+.+++.
T Consensus       288 ~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          288 TVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             EEECCSCCCCHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCcCHHHHHhccc
Confidence            999999988 556777776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.77  E-value=2.9e-09  Score=92.46  Aligned_cols=120  Identities=8%  Similarity=-0.007  Sum_probs=93.6

Q ss_pred             CCCEEEEEEecCCCc---ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCC-CCc--cCchhhccc
Q 048591          161 KKNVKRINVFYKQSD---FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSL-VLI--QYPSGIENL  234 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~--~lp~~i~~L  234 (286)
                      ...++.+.+..+...   .+..+..+++|++|.+.++....    ..+..+..+++|+.|++++| .++  .+|..++.+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            467888888877632   33445578899999998887653    45667888999999999998 576  477778889


Q ss_pred             cccceeeeccc-cccc--cchhHhhCCC-CccEEecCCCC--c--cccchHHhhhhccC
Q 048591          235 FLLRYLKLNIP-SLKI--LPSSLLSNLL-NLYTLDMPFSY--I--DHTADEFTLHARNT  285 (286)
Q Consensus       235 ~~L~~L~L~~~-~i~~--LP~~i~~~L~-~L~~L~l~~~~--l--~~lP~~i~~L~~~~  285 (286)
                      ++|++|++++| .+..  +|..+ +.++ +|++|++++|.  +  ..+|..+.++++|+
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             CCCCEEcCCCCCCcChHHHHHHH-HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            99999999999 7874  67777 8899 99999999994  4  56788777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.74  E-value=2.4e-08  Score=94.02  Aligned_cols=68  Identities=18%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             CCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          211 LEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       211 l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      +++|+.|++++|.++.+|   ..+++|++|++++|.|+.+|.    .+++|++|++++|++..+|..++++++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~  287 (622)
T 3g06_A          220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSET  287 (622)
T ss_dssp             CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTC
T ss_pred             CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccC
Confidence            367888888888888888   456889999999999999988    35789999999999999999999988775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.68  E-value=1.2e-08  Score=90.54  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=42.2

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhh-hhcCCCceEEEEeeCCCC-----ccCchhhccccccceeeeccccccc-----c
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGI-ICLMLEFLRVLDLGSLVL-----IQYPSGIENLFLLRYLKLNIPSLKI-----L  250 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~l-----~~lp~~i~~L~~L~~L~L~~~~i~~-----L  250 (286)
                      .+++|++|.+.++...........+ .+..+++|+.|+|++|.+     ..+|..+..+++|++|+|++|.+..     +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            3445555555555443100000111 444555555555555555     3445555555555555555555442     2


Q ss_pred             chhHhhC--CCCccEEecCCCCcc
Q 048591          251 PSSLLSN--LLNLYTLDMPFSYID  272 (286)
Q Consensus       251 P~~i~~~--L~~L~~L~l~~~~l~  272 (286)
                      |..+ ..  +++|++|++++|.+.
T Consensus       265 ~~~l-~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          265 VDAF-SKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HHHH-HTCSSCCCCEEECCSSCCB
T ss_pred             HHHH-hhccCCCeEEEECcCCcCC
Confidence            4443 33  555555555555553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.67  E-value=4.5e-08  Score=88.92  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCc---------------hhhhhhcCCCceEEEEeeCCCCcc
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPI---------------DWGIICLMLEFLRVLDLGSLVLIQ  226 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~---------------~~~~~~~~l~~Lr~L~l~~~~l~~  226 (286)
                      ..++.+.+..+.....+.+..+++|+.|.+.++........               .++ .+..+++|+.|++++|.++.
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence            45556666555432222344556666666666554421100               011 23333334444444443333


Q ss_pred             CchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccch
Q 048591          227 YPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD  276 (286)
Q Consensus       227 lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~  276 (286)
                      +|...   .+|++|++++|.+..+|. + +.+++|++|++++|++..+|.
T Consensus       210 l~~~~---~~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          210 LPDLP---LSLESIVAGNNILEELPE-L-QNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             CCCCC---TTCCEEECCSSCCSSCCC-C-TTCTTCCEEECCSSCCSSCCS
T ss_pred             CCCCc---CcccEEECcCCcCCcccc-c-CCCCCCCEEECCCCcCCcccc
Confidence            33211   234444444444444552 4 555555555555555554544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.64  E-value=3.4e-08  Score=89.70  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=70.3

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK  241 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~  241 (286)
                      ..++.+.+..+.......  -.++|++|.+.++....     +| .+..+++|++|++++|.++.+|..+   .+|++|+
T Consensus       111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~  179 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIA  179 (454)
T ss_dssp             TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEE
T ss_pred             CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEE
Confidence            556677776665332211  12678888888877653     23 4788888888888888888777543   4777888


Q ss_pred             eccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591          242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE  277 (286)
Q Consensus       242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~  277 (286)
                      +++|.++.+| ++ +++++|++|++++|.+..+|..
T Consensus       180 L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~~  213 (454)
T 1jl5_A          180 AGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPDL  213 (454)
T ss_dssp             CCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCCC
T ss_pred             CcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCCC
Confidence            8888777777 46 7777777777777766555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.61  E-value=2.7e-08  Score=88.21  Aligned_cols=114  Identities=13%  Similarity=0.113  Sum_probs=90.2

Q ss_pred             CCEEEEEEecCCCc------ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cch
Q 048591          162 KNVKRINVFYKQSD------FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPS  229 (286)
Q Consensus       162 ~~~r~l~l~~~~~~------~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~  229 (286)
                      ..++.+.+..+...      ... .+..+++|+.|.+.++.........++..+..+++|+.|+|++|.+..     +|.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            46788888888754      222 455889999999999987310001567788999999999999999874     466


Q ss_pred             hh--ccccccceeeeccccccc-----cchhHhhCCCCccEEecCCCCccccc
Q 048591          230 GI--ENLFLLRYLKLNIPSLKI-----LPSSLLSNLLNLYTLDMPFSYIDHTA  275 (286)
Q Consensus       230 ~i--~~L~~L~~L~L~~~~i~~-----LP~~i~~~L~~L~~L~l~~~~l~~lP  275 (286)
                      .+  +.+++|++|+|++|.+..     +|..++.++++|++|++++|.+...+
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            66  449999999999999987     99988566999999999999986544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.57  E-value=7.4e-08  Score=84.36  Aligned_cols=120  Identities=13%  Similarity=-0.046  Sum_probs=66.2

Q ss_pred             CCCEEEEEEecCCCccccc--CCCCCCeeEEEEecCCCCCCCCchhhhhhcCCC-ceEEEEeeCCCCccCchhhcccccc
Q 048591          161 KKNVKRINVFYKQSDFVHF--VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLE-FLRVLDLGSLVLIQYPSGIENLFLL  237 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~L~~L  237 (286)
                      ..+++.+.+..+.......  .....++..+.+.++.....   ..+..|..+. .++.|++++|.++.+|..+....+|
T Consensus       103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L  179 (350)
T 4ay9_X          103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL  179 (350)
T ss_dssp             CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred             ccccccccccccccccCCchhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhccccccccCCChhhccccch
Confidence            3456666666655332111  11334455555544322110   1222333333 4667777777777777666666677


Q ss_pred             ceeeecc-ccccccchhHhhCCCCccEEecCCCCccccchH-Hhhhhc
Q 048591          238 RYLKLNI-PSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHAR  283 (286)
Q Consensus       238 ~~L~L~~-~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~  283 (286)
                      +.|++++ |.++.+|..+|+.+++|++|++++|++..+|.+ +.+|++
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~  227 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  227 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchH
Confidence            7777764 457777765546777777777777777666653 334433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.41  E-value=3.4e-07  Score=80.12  Aligned_cols=115  Identities=14%  Similarity=0.064  Sum_probs=75.6

Q ss_pred             CCCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceE-EEEeeCCCCccCc-hhhcccc
Q 048591          160 SKKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLR-VLDLGSLVLIQYP-SGIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr-~L~l~~~~l~~lp-~~i~~L~  235 (286)
                      .+..++.+.+..+... ++. .+.++++|++|.+.+|.....   ..+..|.+++.++ .+.+.+|.+..+| ..+..++
T Consensus        28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~---i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~  104 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV---IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  104 (350)
T ss_dssp             CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE---ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred             cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc---cChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence            3456778888877754 332 345778888888888775431   2234566776655 4566667777664 5567788


Q ss_pred             ccceeeeccccccccchhHhhCCCCccEEecCCC-CccccchH
Q 048591          236 LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFS-YIDHTADE  277 (286)
Q Consensus       236 ~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~  277 (286)
                      +|++|++++|+++.+|...+....++.+|++.++ ++..+|..
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~  147 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN  147 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhcccccccccccc
Confidence            8888888888888777654355667777777664 56666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.32  E-value=3.3e-07  Score=80.54  Aligned_cols=110  Identities=17%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             CEEEEEEecCCCcc--cccCCC-----CCCeeEEEEecCCCCCCCCchhhhhhcCC-CceEEEEeeCCCCccCch-hhc-
Q 048591          163 NVKRINVFYKQSDF--VHFVDD-----DSHMHSLLYFTSKSDHLDPIDWGIICLML-EFLRVLDLGSLVLIQYPS-GIE-  232 (286)
Q Consensus       163 ~~r~l~l~~~~~~~--~~~~~~-----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~~lp~-~i~-  232 (286)
                      .++.+.+..+....  +..+..     .++|++|.+.++.........+...+..+ ++|+.|++++|.++..+. .++ 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            67777777665331  111112     26777777777776532211222334445 678888888887775543 332 


Q ss_pred             ---c-ccccceeeecccccc-----ccchhHhhCCC-CccEEecCCCCccc
Q 048591          233 ---N-LFLLRYLKLNIPSLK-----ILPSSLLSNLL-NLYTLDMPFSYIDH  273 (286)
Q Consensus       233 ---~-L~~L~~L~L~~~~i~-----~LP~~i~~~L~-~L~~L~l~~~~l~~  273 (286)
                         . .++|++|++++|.+.     .++..+ ..+. +|++|++++|++..
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQIL-AAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHH-hcCCccccEeeecCCCCch
Confidence               2 257888888888776     566666 6665 88888888887743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.23  E-value=4.7e-07  Score=79.55  Aligned_cols=119  Identities=13%  Similarity=0.009  Sum_probs=86.0

Q ss_pred             CCEEEEEEecCCCcc--cc----cCCCC-CCeeEEEEecCCCCCCCCchhhhhhcC-CCceEEEEeeCCCCc-----cCc
Q 048591          162 KNVKRINVFYKQSDF--VH----FVDDD-SHMHSLLYFTSKSDHLDPIDWGIICLM-LEFLRVLDLGSLVLI-----QYP  228 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~--~~----~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~-l~~Lr~L~l~~~~l~-----~lp  228 (286)
                      ..++.+.+..+....  +.    .+... ++|++|.+.++.........+...+.. .++|+.|++++|.+.     .++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            789999999887432  11    12234 799999999998865321123334555 369999999999987     455


Q ss_pred             hhhcccc-ccceeeeccccccccch-----hHhhCC-CCccEEecCCCCccc-----cchHHhhh
Q 048591          229 SGIENLF-LLRYLKLNIPSLKILPS-----SLLSNL-LNLYTLDMPFSYIDH-----TADEFTLH  281 (286)
Q Consensus       229 ~~i~~L~-~L~~L~L~~~~i~~LP~-----~i~~~L-~~L~~L~l~~~~l~~-----lP~~i~~L  281 (286)
                      ..+..+. +|++|++++|++...+.     .+ ..+ ++|++|++++|.+..     +|..+..+
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~  223 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFL-ASIPASVTSLDLSANLLGLKSYAELAYIFSSI  223 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHH-HhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence            5566665 99999999999875543     33 555 599999999999866     77777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.23  E-value=2.8e-07  Score=83.32  Aligned_cols=88  Identities=20%  Similarity=0.053  Sum_probs=49.3

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-----chh-hccccccceeeeccccccc-----cc
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-----PSG-IENLFLLRYLKLNIPSLKI-----LP  251 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-----p~~-i~~L~~L~~L~L~~~~i~~-----LP  251 (286)
                      .++|+.|.+.++.........++..+..+++|+.|++++|.+...     +.. ...+++|++|++++|.+..     +|
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence            345666666665543211011344555666666666666665421     111 2245666777777666654     56


Q ss_pred             hhHhhCCCCccEEecCCCCc
Q 048591          252 SSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       252 ~~i~~~L~~L~~L~l~~~~l  271 (286)
                      ..+ .++++|++|++++|.+
T Consensus       278 ~~l-~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          278 RVL-RAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHH-HHCTTCCEEECTTCCC
T ss_pred             HHH-hhCCCcceEECCCCCC
Confidence            666 6667777777777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=1.7e-06  Score=72.68  Aligned_cols=75  Identities=20%  Similarity=0.071  Sum_probs=53.9

Q ss_pred             cCCCceEEEEeeCCCCccCc---hhhccccccceeeeccccccccchhHhhCCC--CccEEecCCCCc-cccch------
Q 048591          209 LMLEFLRVLDLGSLVLIQYP---SGIENLFLLRYLKLNIPSLKILPSSLLSNLL--NLYTLDMPFSYI-DHTAD------  276 (286)
Q Consensus       209 ~~l~~Lr~L~l~~~~l~~lp---~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~--~L~~L~l~~~~l-~~lP~------  276 (286)
                      .+++.|+.|+|++|.++.++   ..++.+++|++|+|++|.|+.+ ..+ ..+.  +|++|+|++|.+ ..+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchhHHH
Confidence            56788888888888877544   5667888888888888888776 334 5555  888888888887 44552      


Q ss_pred             -HHhhhhccC
Q 048591          277 -EFTLHARNT  285 (286)
Q Consensus       277 -~i~~L~~~~  285 (286)
                       -+..+++|+
T Consensus       245 ~il~~~P~L~  254 (267)
T 3rw6_A          245 AIRERFPKLL  254 (267)
T ss_dssp             HHHHHCTTCC
T ss_pred             HHHHHCcccC
Confidence             255566554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.14  E-value=8.2e-07  Score=80.21  Aligned_cols=111  Identities=14%  Similarity=0.055  Sum_probs=83.0

Q ss_pred             CCCEEEEEEecCCCcc---cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhc-ccc
Q 048591          161 KKNVKRINVFYKQSDF---VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIE-NLF  235 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~-~L~  235 (286)
                      +..++.+.+..+....   ...+..+++|++|.+.++.........++..+..+++|+.|++++|.+.. .+..+. .+.
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            3467888888776431   11133688999999999987531111346678889999999999999864 233333 355


Q ss_pred             ----ccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591          236 ----LLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       236 ----~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~  272 (286)
                          +|++|++++|.+.     .+|..+ .++++|++|++++|.+.
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCc
Confidence                6999999999987     578888 99999999999999884

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.04  E-value=1.9e-06  Score=76.11  Aligned_cols=109  Identities=10%  Similarity=-0.005  Sum_probs=64.7

Q ss_pred             CEEEEEEecCCCcc------cccC-CCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchh
Q 048591          163 NVKRINVFYKQSDF------VHFV-DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSG  230 (286)
Q Consensus       163 ~~r~l~l~~~~~~~------~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~  230 (286)
                      .++.+.+..+....      ...+ ...++|++|.+.+|.........+...+...++|+.|+|++|.+.     .++..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            46667766665321      1111 135667777777776532110123344566777777777777765     23445


Q ss_pred             hccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591          231 IENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       231 i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~  272 (286)
                      +...++|++|+|++|.|.     .++..+ ...++|++|+|++|.+.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L-~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAA-REHPSLELLHLYFNELS  252 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHH-HHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHH-HhCCCCCEEeccCCCCC
Confidence            556667777777777765     344555 66677777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.97  E-value=5.4e-06  Score=69.56  Aligned_cols=82  Identities=22%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccc--ccceeeecccccc-ccch------
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLF--LLRYLKLNIPSLK-ILPS------  252 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~--~L~~L~L~~~~i~-~LP~------  252 (286)
                      .+++|++|.+.+|......  .++..+..+++|+.|+|++|.++.+ ..++.+.  +|++|+|++|.+. .+|.      
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            5789999999999997643  3456778999999999999999876 3466666  9999999999986 3552      


Q ss_pred             hHhhCCCCccEEec
Q 048591          253 SLLSNLLNLYTLDM  266 (286)
Q Consensus       253 ~i~~~L~~L~~L~l  266 (286)
                      .++..+++|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            23388999999973

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=7.2e-06  Score=70.91  Aligned_cols=97  Identities=15%  Similarity=-0.010  Sum_probs=80.4

Q ss_pred             CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc-eeeeccccccccchhHhhCCCC
Q 048591          183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR-YLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~-~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      +++|+++.+.++....    .....|..+.+|+.|++.++ ++.++ ..+..+.+|+ .+.+.+ +++.++...|..+.+
T Consensus       225 ~~~L~~l~L~~n~i~~----I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT----IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCE----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcce----ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            7899999998877654    55677999999999999987 77776 5578899999 999988 788898776699999


Q ss_pred             ccEEecCCCCccccch-HHhhhhccC
Q 048591          261 LYTLDMPFSYIDHTAD-EFTLHARNT  285 (286)
Q Consensus       261 L~~L~l~~~~l~~lP~-~i~~L~~~~  285 (286)
                      |+.+++.++++..++. .+.++++|+
T Consensus       299 L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             CCEEEeCCCccCccchhhhcCCcchh
Confidence            9999999999988886 466666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.89  E-value=2.8e-06  Score=75.02  Aligned_cols=111  Identities=14%  Similarity=0.029  Sum_probs=77.4

Q ss_pred             CCEEEEEEecCCCcc--ccc-CCCCCCeeEEEEecCCCCCCCCchhhhhh-cCCCceEEEEeeCCCCcc-----Cchhhc
Q 048591          162 KNVKRINVFYKQSDF--VHF-VDDDSHMHSLLYFTSKSDHLDPIDWGIIC-LMLEFLRVLDLGSLVLIQ-----YPSGIE  232 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~--~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~l~~-----lp~~i~  232 (286)
                      ..++.+.+..+....  ... ...+++|+.|++.+|.........+...+ ...+.|+.|+|++|.+..     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            467788888776431  111 11356899999999877531100122223 356789999999999863     555667


Q ss_pred             cccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCccc
Q 048591          233 NLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       233 ~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~~  273 (286)
                      ..++|++|+|++|.|.     .++..+ ...++|++|+|++|.+..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCCH
Confidence            7889999999999876     456667 788899999999998853

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.88  E-value=5.5e-06  Score=65.68  Aligned_cols=110  Identities=10%  Similarity=0.110  Sum_probs=80.0

Q ss_pred             CCEEEEEEecC-CCc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cch
Q 048591          162 KNVKRINVFYK-QSD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPS  229 (286)
Q Consensus       162 ~~~r~l~l~~~-~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~  229 (286)
                      ..++.+.+..+ ...      +...+...++|++|.+.++.........+...+...+.|+.|+|++|.+..     +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            45667788776 432      223344678899999999887532111345566777889999999999873     556


Q ss_pred             hhccccccceeee--cccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591          230 GIENLFLLRYLKL--NIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID  272 (286)
Q Consensus       230 ~i~~L~~L~~L~L--~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~  272 (286)
                      .+...++|++|+|  ++|.|.     .+...+ ...++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHH-HhCCCcCEEeccCCCCC
Confidence            6777788999999  778775     366666 77889999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.83  E-value=3.3e-06  Score=78.70  Aligned_cols=75  Identities=12%  Similarity=-0.006  Sum_probs=34.8

Q ss_pred             cCCCceEEEEeeCCCCcc-----Cchhhccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCccccchHH
Q 048591          209 LMLEFLRVLDLGSLVLIQ-----YPSGIENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYIDHTADEF  278 (286)
Q Consensus       209 ~~l~~Lr~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i  278 (286)
                      ..+++|+.|++++|.+..     ++.....+++|++|++++|.+.     .++..+ .++++|++|++++|.+..+|..+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~  239 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFF  239 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHH
Confidence            344555555555554331     2222334445555555555443     333333 44555555555555554455444


Q ss_pred             hhhhcc
Q 048591          279 TLHARN  284 (286)
Q Consensus       279 ~~L~~~  284 (286)
                      +++++|
T Consensus       240 ~~~~~L  245 (592)
T 3ogk_B          240 KAAANL  245 (592)
T ss_dssp             HHCTTC
T ss_pred             hhhhHH
Confidence            444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.78  E-value=6.4e-06  Score=65.28  Aligned_cols=92  Identities=8%  Similarity=-0.005  Sum_probs=71.2

Q ss_pred             CCCCCCeeEEEEecC-CCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchhhccccccceeeecccccc-----
Q 048591          180 VDDDSHMHSLLYFTS-KSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK-----  248 (286)
Q Consensus       180 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----  248 (286)
                      +...++|++|.+.++ .........+...+...+.|+.|+|++|.+.     .+...+...++|++|+|++|.|.     
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            347889999999988 6643111134566778899999999999986     24455666688999999999886     


Q ss_pred             ccchhHhhCCCCccEEec--CCCCcc
Q 048591          249 ILPSSLLSNLLNLYTLDM--PFSYID  272 (286)
Q Consensus       249 ~LP~~i~~~L~~L~~L~l--~~~~l~  272 (286)
                      .+...+ ...++|++|++  ++|.+.
T Consensus       112 ~l~~~L-~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          112 ALVEAL-QSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHGG-GGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHH-HhCCCceEEEecCCCCCCC
Confidence            367777 88899999999  888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.73  E-value=3e-05  Score=72.19  Aligned_cols=103  Identities=10%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeecc-----------------
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNI-----------------  244 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~-----------------  244 (286)
                      .+++|++|.+.++.........++..+..+++|+.|++++|.+..+|..++.+++|++|++++                 
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            456677776666655422111344556667777777777777666666666666666666642                 


Q ss_pred             ----------ccccccchhHhhCCCCccEEecCCCCcc--ccchHHhhhhccC
Q 048591          245 ----------PSLKILPSSLLSNLLNLYTLDMPFSYID--HTADEFTLHARNT  285 (286)
Q Consensus       245 ----------~~i~~LP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~~  285 (286)
                                +....+|..+ ..+++|++|++++|.+.  .++..+.++++|+
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             ccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence                      2233455555 66777777777777652  2333345555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.69  E-value=7.4e-06  Score=76.28  Aligned_cols=119  Identities=13%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             CEEEEEEecCCCc--ccccCC-CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cchhhccc
Q 048591          163 NVKRINVFYKQSD--FVHFVD-DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPSGIENL  234 (286)
Q Consensus       163 ~~r~l~l~~~~~~--~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~~L  234 (286)
                      .++++.+..+...  .+..+. .+++|++|.+.++......  .++....++++|++|++++|.++.     ++.-...+
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD--GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH--HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH--HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            4555666554422  111111 3566666666665321100  133444566666666666666442     22222244


Q ss_pred             cccceeeecccc--c--cccchhHhhCCCCccEEecCCC-CccccchHHhhhhcc
Q 048591          235 FLLRYLKLNIPS--L--KILPSSLLSNLLNLYTLDMPFS-YIDHTADEFTLHARN  284 (286)
Q Consensus       235 ~~L~~L~L~~~~--i--~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~~  284 (286)
                      ++|++|++++|.  +  ..++.-+ .++++|++|++++| .+..+|..+.++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L  237 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQL  237 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTC
T ss_pred             CcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcc
Confidence            566666666654  1  1222223 44566666666666 334455555554444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.63  E-value=8.5e-05  Score=58.12  Aligned_cols=87  Identities=10%  Similarity=-0.077  Sum_probs=62.4

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-Ccc-Cchhhccc----cccceeeecccc-cccc-chh
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQ-YPSGIENL----FLLRYLKLNIPS-LKIL-PSS  253 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~-lp~~i~~L----~~L~~L~L~~~~-i~~L-P~~  253 (286)
                      .-.+|+.|++.++....    .--..+..+++|+.|+|++|. ++. --..++.+    ++|++|+|++|. |+.- =..
T Consensus        59 ~~~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             TCCCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             CCceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            34579999999988653    222446789999999999997 662 12345554    379999999985 6521 134


Q ss_pred             HhhCCCCccEEecCCCC-ccc
Q 048591          254 LLSNLLNLYTLDMPFSY-IDH  273 (286)
Q Consensus       254 i~~~L~~L~~L~l~~~~-l~~  273 (286)
                      + .++++|++|++++|. ++.
T Consensus       135 L-~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 L-HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             G-GGCTTCCEEEEESCTTCCC
T ss_pred             H-hcCCCCCEEECCCCCCCCc
Confidence            5 789999999999994 543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.63  E-value=0.00012  Score=64.22  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=38.5

Q ss_pred             CCCceEEEEeeCCCCcc-Cchhh---ccccccceeeeccccccc-----cchhHhhCCCCccEEecCCCCc
Q 048591          210 MLEFLRVLDLGSLVLIQ-YPSGI---ENLFLLRYLKLNIPSLKI-----LPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       210 ~l~~Lr~L~l~~~~l~~-lp~~i---~~L~~L~~L~L~~~~i~~-----LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      .+++|++|+|.+|.+.. .+..+   +.+++|++|+|+.|.+..     ++..+ .++++|+.|++++|.+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcC
Confidence            46777777777776541 12222   246677777777776653     55555 6677777777777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.48  E-value=3.9e-05  Score=71.40  Aligned_cols=61  Identities=15%  Similarity=0.018  Sum_probs=35.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccceeeec
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLRYLKLN  243 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~~L~L~  243 (286)
                      .+++|++|.+.++. ...+...+......+++|+.|++++|. +..+|..+..+++|++|+++
T Consensus       182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            56677777776665 111111233344556777777777763 44566666666666666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.34  E-value=0.00024  Score=52.78  Aligned_cols=53  Identities=26%  Similarity=0.263  Sum_probs=36.6

Q ss_pred             EEEeeCCCCc--cCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCC
Q 048591          216 VLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSY  270 (286)
Q Consensus       216 ~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~  270 (286)
                      .++.+++.++  .+|..+.  .+|++|+|++|+|+.+|...|..+.+|++|+|.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            5666666666  6775432  357777777777777777665777777777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.18  E-value=0.00053  Score=59.03  Aligned_cols=100  Identities=10%  Similarity=0.004  Sum_probs=80.0

Q ss_pred             CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceE-EEEeeCCCCccCc-hhhccccc
Q 048591          161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLR-VLDLGSLVLIQYP-SGIENLFL  236 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr-~L~l~~~~l~~lp-~~i~~L~~  236 (286)
                      ...++.+.+..+... ++. .+.++++|+++.+.++ ...    .....|.++.+|+ .+++.+ .++.++ ..+..+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~----I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT----IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE----ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce----ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            456778888776533 332 3558999999999886 332    5567899999999 999998 777665 67889999


Q ss_pred             cceeeeccccccccchhHhhCCCCccEEec
Q 048591          237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDM  266 (286)
Q Consensus       237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l  266 (286)
                      |+.+++++++++.++...|.++++|+.+..
T Consensus       299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999999999987799999998864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.18  E-value=0.00026  Score=62.06  Aligned_cols=120  Identities=12%  Similarity=-0.003  Sum_probs=78.1

Q ss_pred             CCCCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhh--cCCCceEEEEeeCC--C------CccCc
Q 048591          160 SKKNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIIC--LMLEFLRVLDLGSL--V------LIQYP  228 (286)
Q Consensus       160 ~~~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~l~~~--~------l~~lp  228 (286)
                      ..+.++.|.+.++. ...+. + .+++|+.|.+..+....    .....+  ..+++|+.|+|+.+  .      +..+.
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPD----SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCH----HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCCh----HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            35678899998764 23332 3 58899999998776542    222233  37899999998632  1      22222


Q ss_pred             hhh--ccccccceeeeccccccc-cchhHh--hCCCCccEEecCCCCccc-----cchHHhhhhccC
Q 048591          229 SGI--ENLFLLRYLKLNIPSLKI-LPSSLL--SNLLNLYTLDMPFSYIDH-----TADEFTLHARNT  285 (286)
Q Consensus       229 ~~i--~~L~~L~~L~L~~~~i~~-LP~~i~--~~L~~L~~L~l~~~~l~~-----lP~~i~~L~~~~  285 (286)
                      ..+  +.+++|++|+|++|.+.. .+..++  +.+++|++|+|+.|.+..     ++.++.++++|+
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence            222  357899999999988752 333441  257899999999998744     566656666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.32  E-value=0.0064  Score=53.95  Aligned_cols=112  Identities=4%  Similarity=-0.057  Sum_probs=72.7

Q ss_pred             CCEEEEEEecCCCccc-ccCCCCCCeeEEEEecCCCCCCCC-chhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc
Q 048591          162 KNVKRINVFYKQSDFV-HFVDDDSHMHSLLYFTSKSDHLDP-IDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~  238 (286)
                      ..++.+.+..+-..+. ..+.++++|+++.+.++....... ......|..+++|+.+++.+ .++.++ ..+..+.+|+
T Consensus       248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            4556666644433332 234477888888887765531100 13446778888888888874 466665 4566778888


Q ss_pred             eeeeccccccccchhHhhCCCCccEEecCCCCccccch
Q 048591          239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD  276 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~  276 (286)
                      .+.+..+ ++.++...|.++ +|+.+++.+|.+..++.
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence            8888544 777777665777 89999988886655543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.95  E-value=0.012  Score=45.72  Aligned_cols=86  Identities=10%  Similarity=-0.044  Sum_probs=60.3

Q ss_pred             CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCC----CceEEEEeeCCC-Ccc-Cchhhc
Q 048591          161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLML----EFLRVLDLGSLV-LIQ-YPSGIE  232 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l----~~Lr~L~l~~~~-l~~-lp~~i~  232 (286)
                      .-.++.+.+..+....  ...+..+++|++|.+.++.....   .--..+..+    ++|+.|++++|. ++. =-..+.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            4468999999877432  23345899999999999975321   122334443    479999999997 762 113567


Q ss_pred             cccccceeeecccc-ccc
Q 048591          233 NLFLLRYLKLNIPS-LKI  249 (286)
Q Consensus       233 ~L~~L~~L~L~~~~-i~~  249 (286)
                      .+++|++|++++|. ++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            88999999999985 553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.59  E-value=0.015  Score=51.50  Aligned_cols=78  Identities=15%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591          185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL  264 (286)
Q Consensus       185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L  264 (286)
                      +|+++.+.+ ....    .....|..+++|+.+++.++.++.+|.......+|+.+.+.. .++.++...|.++.+|+.+
T Consensus       158 ~L~~i~lp~-~l~~----I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQ----LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             CCCEEECCT-TCCE----ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCE
T ss_pred             CceEEEeCC-CccE----ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEE
Confidence            466665543 2211    334567788888888888877777775544456777777763 3667766665777777777


Q ss_pred             ecCC
Q 048591          265 DMPF  268 (286)
Q Consensus       265 ~l~~  268 (286)
                      ++..
T Consensus       232 ~l~~  235 (401)
T 4fdw_A          232 EIPE  235 (401)
T ss_dssp             ECCT
T ss_pred             ecCC
Confidence            7755

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.26  E-value=0.031  Score=41.12  Aligned_cols=35  Identities=26%  Similarity=0.210  Sum_probs=22.3

Q ss_pred             ceEEEEeeCCCCccCchh-hccccccceeeeccccc
Q 048591          213 FLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSL  247 (286)
Q Consensus       213 ~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i  247 (286)
                      +|+.|+|++|.|+.+|.. +..+.+|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            466677777777766643 45566677777776643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.82  E-value=0.027  Score=44.63  Aligned_cols=108  Identities=12%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             CEEEEEEecC-CCc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchh
Q 048591          163 NVKRINVFYK-QSD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSG  230 (286)
Q Consensus       163 ~~r~l~l~~~-~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~  230 (286)
                      .++.+.+..+ ...      +.+.+..-..|+.|.+.++.+....-..+...+..-+.|+.|+|++|.|.     .+-..
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4556666553 321      22334356788888888887753111144566667778888888888876     22233


Q ss_pred             hccccccceeeecccc---cc-----ccchhHhhCCCCccEEecCCCCc
Q 048591          231 IENLFLLRYLKLNIPS---LK-----ILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       231 i~~L~~L~~L~L~~~~---i~-----~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      +..=+.|+.|+|+++.   +.     .+-..+ ..=+.|+.|+++.|.+
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASM  169 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCH
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCc
Confidence            3344568888887653   22     344444 5567888888877754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.05  E-value=0.11  Score=45.44  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      .+.+|+.+.+..+-. .    .....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.++...|.++.+
T Consensus       295 ~~~~L~~i~l~~~i~-~----I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          295 GCSSLTEVKLLDSVK-F----IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TCTTCCEEEECTTCC-E----ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccc-e----echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            455666665543311 1    23355777777888777543 55554 45667788888888665 77777766678888


Q ss_pred             ccEEecCCCCccccchHHhhhhcc
Q 048591          261 LYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       261 L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      |+.+++..+ +..+...+.+.++|
T Consensus       368 L~~i~lp~~-~~~~~~~F~~c~~L  390 (394)
T 4fs7_A          368 LKKVELPKR-LEQYRYDFEDTTKF  390 (394)
T ss_dssp             CCEEEEEGG-GGGGGGGBCTTCEE
T ss_pred             CCEEEECCC-CEEhhheecCCCCC
Confidence            888887653 33333444444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.94  E-value=0.33  Score=42.05  Aligned_cols=59  Identities=15%  Similarity=0.128  Sum_probs=28.7

Q ss_pred             hhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEec
Q 048591          207 ICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDM  266 (286)
Q Consensus       207 ~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l  266 (286)
                      .|..+.+|+.+.+.++.++.++ ..+.++.+|+.+.+..+ ++.++..-|.++.+|+.+.+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            3445555555555555444443 23444555555555432 44454443355555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.06  E-value=0.36  Score=41.78  Aligned_cols=116  Identities=10%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             CCEEEEEEecCCCcccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccce
Q 048591          162 KNVKRINVFYKQSDFVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRY  239 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~  239 (286)
                      ..+..+.+..+...... .+..+.+|+.+.+..+-. .    .-...|..+..|+.+.+..+ +..++ ..+..+.+|+.
T Consensus       217 ~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~-~----I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          217 KNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVT-S----IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             SSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCC-E----ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccceeeeccceeEEccccccCCccceEEEcCCCcc-E----eCccccceeehhcccccccc-ceecccccccccccccc
Confidence            34555555444322221 233678888888765422 1    33456788888998888653 55555 45677889999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhcc
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHARN  284 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~~  284 (286)
                      +.+.++.++.++...|.++.+|+.+.+..+ +..++. .+.++++|
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            999988899998877789999999998643 444443 23344443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.48  E-value=0.49  Score=41.33  Aligned_cols=63  Identities=16%  Similarity=0.124  Sum_probs=43.4

Q ss_pred             hhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCC
Q 048591          205 GIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFS  269 (286)
Q Consensus       205 ~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~  269 (286)
                      ...|.++.+|+.+++..+ ++.+. ..+..+.+|+.+.+..+ ++.++..-|.++.+|+.+++.++
T Consensus       304 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          304 ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            355677777777777643 44444 34666778888888543 77777766678888888888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.33  E-value=0.65  Score=40.50  Aligned_cols=96  Identities=10%  Similarity=0.074  Sum_probs=57.8

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCC
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLN  260 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~  260 (286)
                      .+.+|+++.+......     .-...|.++..|+.+.+. +.++.++ ..+..+.+|+.+.+..+ ++.++..-|..+.+
T Consensus       263 ~c~~L~~i~lp~~~~~-----I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-----IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TCSSCCEEECCTTCCE-----ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ecccccEEecccccce-----ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            5667777766443321     233556677777777775 3355555 34556777887777643 66676665577788


Q ss_pred             ccEEecCCCCccccch-HHhhhhccC
Q 048591          261 LYTLDMPFSYIDHTAD-EFTLHARNT  285 (286)
Q Consensus       261 L~~L~l~~~~l~~lP~-~i~~L~~~~  285 (286)
                      |+.+.+..+ +..++. .+.++++|+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            888877543 555543 244555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.28  E-value=0.25  Score=39.07  Aligned_cols=87  Identities=13%  Similarity=0.003  Sum_probs=62.5

Q ss_pred             CCCCeeEEEEecC-CCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchhhccccccceeeecccccc-----cc
Q 048591          182 DDSHMHSLLYFTS-KSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK-----IL  250 (286)
Q Consensus       182 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----~L  250 (286)
                      .-+.|+.|.+.++ ......-..+...+..-..|+.|+|++|.+.     .+-..+..=+.|+.|+|++|.|.     .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            5678999999875 4432111134567778889999999999986     33334445578999999999885     45


Q ss_pred             chhHhhCCCCccEEecCCC
Q 048591          251 PSSLLSNLLNLYTLDMPFS  269 (286)
Q Consensus       251 P~~i~~~L~~L~~L~l~~~  269 (286)
                      -+.+ ..=+.|+.|+|++|
T Consensus       119 a~aL-~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRST-LVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHT-TTTCCCSEEECCCC
T ss_pred             HHHH-hhCCceeEEECCCC
Confidence            5555 66678999999865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.58  E-value=1.2  Score=38.79  Aligned_cols=76  Identities=12%  Similarity=0.050  Sum_probs=52.0

Q ss_pred             hhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhc
Q 048591          206 IICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHAR  283 (286)
Q Consensus       206 ~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~  283 (286)
                      ..|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+++..+ ++.++...|.++.+|+.+.+..+ +..++. .+.++++
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            45667778888887654 55554 45667889999998644 88887766688999999998765 555543 2334444


Q ss_pred             c
Q 048591          284 N  284 (286)
Q Consensus       284 ~  284 (286)
                      |
T Consensus       368 L  368 (394)
T 4fs7_A          368 L  368 (394)
T ss_dssp             C
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.24
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.22
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.13
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.12
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.05
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.02
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.01
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.94
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.91
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.8
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.5

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=9e-13  Score=96.64  Aligned_cols=114  Identities=15%  Similarity=0.098  Sum_probs=91.1

Q ss_pred             EEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeecc
Q 048591          165 KRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNI  244 (286)
Q Consensus       165 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~  244 (286)
                      |.+.+..+.......++.+++|+.|++.+|....     +|+.+..+++|++|++++|.++.+| .++.+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~-----lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc-----chhhhhhhhcccccccccccccccC-ccccccccCeEECCC
Confidence            4566777765544456688999999999998864     4567899999999999999999987 599999999999999


Q ss_pred             ccccccch--hHhhCCCCccEEecCCCCcccc---chHH-hhhhccC
Q 048591          245 PSLKILPS--SLLSNLLNLYTLDMPFSYIDHT---ADEF-TLHARNT  285 (286)
Q Consensus       245 ~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~l---P~~i-~~L~~~~  285 (286)
                      |+|..+|.  .+ +.+++|++|++++|.+...   +..+ ..+|+++
T Consensus        75 N~i~~~~~~~~l-~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~  120 (124)
T d1dcea3          75 NRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  120 (124)
T ss_dssp             SCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CccCCCCCchhh-cCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcc
Confidence            99998874  56 8999999999999987543   3433 3345543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=1.8e-12  Score=94.95  Aligned_cols=91  Identities=19%  Similarity=0.122  Sum_probs=79.0

Q ss_pred             eEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEec
Q 048591          187 HSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDM  266 (286)
Q Consensus       187 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l  266 (286)
                      |.|++.++....     + +.+..+++|+.|++++|.++.+|+.++.+++|++|++++|.|+.+|. + +++++|++|++
T Consensus         1 R~L~Ls~n~l~~-----l-~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~-~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV-----L-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-V-ANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS-----C-CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC-----C-cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-c-ccccccCeEEC
Confidence            578888888864     2 24789999999999999999999999999999999999999999975 7 99999999999


Q ss_pred             CCCCccccch--HHhhhhccC
Q 048591          267 PFSYIDHTAD--EFTLHARNT  285 (286)
Q Consensus       267 ~~~~l~~lP~--~i~~L~~~~  285 (286)
                      ++|++..+|.  .++.+++++
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCC
T ss_pred             CCCccCCCCCchhhcCCCCCC
Confidence            9999988773  567777664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.4e-12  Score=97.31  Aligned_cols=118  Identities=13%  Similarity=0.029  Sum_probs=97.3

Q ss_pred             CCCEEEEEEecCCCccccc-CCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhh-ccccccc
Q 048591          161 KKNVKRINVFYKQSDFVHF-VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGI-ENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~L~  238 (286)
                      ..++|.+.+.++.....+. ...+++|+.|++.+|....     + +.+..+++|+.|++++|.++.+|..+ ..+++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-----l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-----c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4578999999988654433 3368899999999998863     3 35789999999999999999888654 5799999


Q ss_pred             eeeeccccccccch--hHhhCCCCccEEecCCCCccccch----HHhhhhccC
Q 048591          239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHTAD----EFTLHARNT  285 (286)
Q Consensus       239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~~~  285 (286)
                      .|++++|+|+.++.  .+ ..+++|++|++++|.+..+|.    .+..+++|+
T Consensus        91 ~L~L~~N~i~~~~~l~~l-~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             EEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             cceecccccccccccccc-ccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence            99999999998875  56 899999999999999988874    477777764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1e-11  Score=95.25  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=71.1

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      +..++|.|++.++....     ++..+..+++|++|++++|.+++++ .+..+++|++|++++|+++.+|..++..+++|
T Consensus        16 n~~~lr~L~L~~n~I~~-----i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             CcCcCcEEECCCCCCCc-----cCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            56678888888887764     3345567778888888888887774 47778888888888888888877664668888


Q ss_pred             cEEecCCCCccccch--HHhhhhccC
Q 048591          262 YTLDMPFSYIDHTAD--EFTLHARNT  285 (286)
Q Consensus       262 ~~L~l~~~~l~~lP~--~i~~L~~~~  285 (286)
                      ++|++++|++..+|.  .+..+++|+
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLT  115 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred             ccceeccccccccccccccccccccc
Confidence            888888888776664  455555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.6e-11  Score=99.56  Aligned_cols=119  Identities=19%  Similarity=0.032  Sum_probs=56.0

Q ss_pred             CCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccce
Q 048591          162 KNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRY  239 (286)
Q Consensus       162 ~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~  239 (286)
                      ..++.+.+..+... .+..+..+++|+.|.+.++....    ..+..+..+.+++.|++++|.+..+|.. +..+.+|++
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~  152 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS----LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC----CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccce----eeccccccccccccccccccccceeccccccccccchh
Confidence            34555555554422 22223345555555555554433    2223344444455555555554444422 233455555


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN  284 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~  284 (286)
                      |++++|+++.+|...|+.+++|++|+|++|++..+|.++..+++|
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L  197 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL  197 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred             cccccccccccCccccccccccceeecccCCCcccChhHCCCCCC
Confidence            555555555554433245555555555555555555555444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=2.2e-11  Score=95.90  Aligned_cols=110  Identities=11%  Similarity=0.029  Sum_probs=89.1

Q ss_pred             CCCCEEEEEEecCCCc-cc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccc
Q 048591          160 SKKNVKRINVFYKQSD-FV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~-~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~  235 (286)
                      .+..++++.+..+... ..  ..+..+++|+.|.+.++....    ..+..+..++.|+.|+|++|.++.+|+ .+..++
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~----~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc----ccccccccccccceeeeccccccccCHHHHhCCC
Confidence            4567888999888763 22  233478899999998888865    566788889999999999999988874 578899


Q ss_pred             ccceeeeccccccccchhHhhCCCCccEEecCCCCccc
Q 048591          236 LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       236 ~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~  273 (286)
                      +|++|+|++|+|+.+|...|..+++|++|+|.+|.+..
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            99999999999999988766889999999999987643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=4.2e-11  Score=94.25  Aligned_cols=106  Identities=18%  Similarity=0.129  Sum_probs=86.9

Q ss_pred             cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchh
Q 048591          175 DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSS  253 (286)
Q Consensus       175 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~  253 (286)
                      .+|..+  .++++.|++.++.+...   .....|..+++|+.|++++|.+..+| ..+..+++|++|+|++|+|+.+|..
T Consensus        22 ~iP~~l--p~~l~~L~Ls~N~i~~~---~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~   96 (192)
T d1w8aa_          22 EIPRDI--PLHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             SCCSCC--CTTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             ccCCCC--CCCCCEEEeCCCCCccc---ccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHH
Confidence            344433  36899999999988541   23567889999999999999988655 6788899999999999999999887


Q ss_pred             HhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          254 LLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       254 i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      .|.++++|++|+|++|++..+|++ +..+++++
T Consensus        97 ~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             HHhCCCcccccccCCccccccCHHHhcCCcccc
Confidence            669999999999999999988775 45666553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=1.4e-10  Score=91.69  Aligned_cols=115  Identities=17%  Similarity=0.123  Sum_probs=88.4

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ..+++.+.+..+.......+..+++|+.|.+.++....      ...+..+++|+.|++++|.+..+| .+..+++|++|
T Consensus        83 l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L  155 (199)
T d2omxa2          83 LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD------IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQL  155 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC------CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccc------ccccchhhhhHHhhhhhhhhcccc-ccccccccccc
Confidence            34566666666654443344566777777776665542      235778899999999999988776 58889999999


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ++.+|+++.+|. + +++++|++|++++|++.++| .+++|++|+
T Consensus       156 ~l~~n~l~~l~~-l-~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~  197 (199)
T d2omxa2         156 NFSSNQVTDLKP-L-ANLTTLERLDISSNKVSDIS-VLAKLTNLE  197 (199)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred             ccccccccCCcc-c-cCCCCCCEEECCCCCCCCCc-cccCCCCCC
Confidence            999999998875 7 99999999999999998887 478888775

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.05  E-value=2.5e-12  Score=107.39  Aligned_cols=60  Identities=10%  Similarity=0.021  Sum_probs=50.6

Q ss_pred             CCCccchhHHHHhhhhcCC-CcCCccchhhhhhccccccCccccccchhhHHhhhccCCChhhHHHHhh
Q 048591            2 ENGENVRLDIVPTGGPLRV-TYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFLY   69 (286)
Q Consensus         2 ~kC~GlPLal~~ig~~L~~-~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~k~cFl~   69 (286)
                      ++|+|+||||+++|+.|+. +.++|.+   ..+.+...     ...+|..++++||++||+++|.||-+
T Consensus       216 ~~c~GlPLAl~~ig~~l~~k~~~~~~~---~~~~L~~~-----~~~~v~~il~~sY~~L~~~lk~c~~~  276 (277)
T d2a5yb3         216 ELSSGNPATLMMFFKSCEPKTFEKMAQ---LNNKLESR-----GLVGVECITPYSYKSLAMALQRCVEV  276 (277)
T ss_dssp             HHHTTCHHHHHHHHTTCCSSSHHHHHH---HHHHHHHH-----CSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred             HHhCCCHHHHHHHHHHhccCCHHHHHH---HHHHHhcC-----cHHHHHHHHHHHHhcccHHHHHHHHh
Confidence            4799999999999999998 8888988   55554332     23679999999999999999999975

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.02  E-value=2.1e-10  Score=96.92  Aligned_cols=120  Identities=15%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             CCCCEEEEEEecCCC----cccccCCCCCCeeEEEEec-CCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhcc
Q 048591          160 SKKNVKRINVFYKQS----DFVHFVDDDSHMHSLLYFT-SKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIEN  233 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~----~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~  233 (286)
                      ....++.+.+..+..    .++..++++++|++|++.+ +...+    .+|..+.++++|++|++++|.+.. .|..+..
T Consensus        48 ~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g----~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~  123 (313)
T d1ogqa_          48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             CcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc----ccccccccccccchhhhccccccccccccccc
Confidence            345788999988764    3566777999999999986 55544    467889999999999999999875 4566888


Q ss_pred             ccccceeeeccccc-cccchhHhhCCCCccEEecCCCCc-cccchHHhhhhcc
Q 048591          234 LFLLRYLKLNIPSL-KILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHARN  284 (286)
Q Consensus       234 L~~L~~L~L~~~~i-~~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~~  284 (286)
                      +.+|+++++++|.+ ..+|.++ +++++|+++++++|.+ ..+|..++.+.++
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             hhhhcccccccccccccCchhh-ccCcccceeecccccccccccccccccccc
Confidence            99999999999874 5789999 9999999999999988 5899988887765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=6.1e-10  Score=88.68  Aligned_cols=114  Identities=17%  Similarity=0.057  Sum_probs=78.1

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK  241 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~  241 (286)
                      .+++.+.+..+.......+..+++|+.|.+.++....      ...+..++.++.++++++.++..+ .++.+++|++++
T Consensus        90 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~------~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~  162 (210)
T d1h6ta2          90 KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD------INGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLS  162 (210)
T ss_dssp             TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC------CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccc-cccccccccccc
Confidence            4455555555443322233355555665555554432      134556666667777666666543 567789999999


Q ss_pred             eccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      +++|.+..+|. + +++++|++|++++|++.++| .+.+|++|+
T Consensus       163 l~~n~l~~i~~-l-~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~  203 (210)
T d1h6ta2         163 LEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLR-ALAGLKNLD  203 (210)
T ss_dssp             CCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCG-GGTTCTTCS
T ss_pred             ccccccccccc-c-cCCCCCCEEECCCCCCCCCh-hhcCCCCCC
Confidence            99999998875 7 99999999999999998887 488887775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.00  E-value=4.3e-10  Score=94.96  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccceeeecccccc-ccchh
Q 048591          176 FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-ILPSS  253 (286)
Q Consensus       176 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~LP~~  253 (286)
                      +|..++++++|++|++.++....    ..+..+..+..|+.++++.|.+. .+|..++++++|+++++++|.+. .+|..
T Consensus        93 iP~~i~~L~~L~~L~Ls~N~l~~----~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~  168 (313)
T d1ogqa_          93 IPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             cccccccccccchhhhccccccc----cccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccc
Confidence            33344444555555555444432    22333444444555555544422 44444555555555555554443 44444


Q ss_pred             HhhCCCCc-cEEecCCCCc
Q 048591          254 LLSNLLNL-YTLDMPFSYI  271 (286)
Q Consensus       254 i~~~L~~L-~~L~l~~~~l  271 (286)
                      + +.+.++ +.++++.|++
T Consensus       169 ~-~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         169 Y-GSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             G-GCCCTTCCEEECCSSEE
T ss_pred             c-ccccccccccccccccc
Confidence            4 444443 4444444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.3e-10  Score=92.30  Aligned_cols=119  Identities=18%  Similarity=0.138  Sum_probs=72.7

Q ss_pred             CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhcccccccee
Q 048591          162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYL  240 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L  240 (286)
                      .+++.+.+..+.....+....+++|++|.+.++....     .+..+..++.|+.|+++++.+..++ ..+..+.++++|
T Consensus        55 ~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L  129 (266)
T d1p9ag_          55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (266)
T ss_dssp             TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccceeeccccccccccccc
Confidence            4455555555543322233355566666666555442     2345556666666666666655444 344556667777


Q ss_pred             eeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++++|.+..+|..++..+++|++|++++|++..+|.+ ++.+++|+
T Consensus       130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_         130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             cccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence            7777777777776656788888888888888777654 55666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=9.3e-10  Score=83.45  Aligned_cols=92  Identities=18%  Similarity=0.029  Sum_probs=76.7

Q ss_pred             cccccCCCCCCeeEEEEecCC-CCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccch
Q 048591          175 DFVHFVDDDSHMHSLLYFTSK-SDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPS  252 (286)
Q Consensus       175 ~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~  252 (286)
                      +.+..+..+++|+.|.+.++. ...    ..+..|..+++|+.|++++|.++.++ ..+..+++|++|+|++|+|+.+|.
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~   97 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             cCcccccCccccCeeecCCCccccc----cCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccCh
Confidence            345555578899999997664 543    44567999999999999999999885 568899999999999999999999


Q ss_pred             hHhhCCCCccEEecCCCCc
Q 048591          253 SLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       253 ~i~~~L~~L~~L~l~~~~l  271 (286)
                      ++ ....+|++|+|++|.+
T Consensus        98 ~~-~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          98 KT-VQGLSLQELVLSGNPL  115 (156)
T ss_dssp             TT-TCSCCCCEEECCSSCC
T ss_pred             hh-hccccccccccCCCcc
Confidence            98 5556899999999865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=2.5e-09  Score=84.30  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=92.8

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      ...+++.+.+..+.......+..+++|+.|.+.++....     . +.+..++.|+.|+++++.+...+ .+..+++|++
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~-----~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~  132 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-----I-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNR  132 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             cCCCcCcCccccccccCcccccCCccccccccccccccc-----c-ccccccccccccccccccccccc-ccchhhhhHH
Confidence            356788888888875544446688999999998887753     2 34788999999999988877654 5788999999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      |++++|.+..+| .+ ..+++|+.|++.+|++..+|. ++++++|+
T Consensus       133 L~l~~n~l~~~~-~l-~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~  175 (199)
T d2omxa2         133 LELSSNTISDIS-AL-SGLTSLQQLNFSSNQVTDLKP-LANLTTLE  175 (199)
T ss_dssp             EECCSSCCCCCG-GG-TTCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             hhhhhhhhcccc-cc-cccccccccccccccccCCcc-ccCCCCCC
Confidence            999999998876 47 899999999999999988874 77777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=2.3e-09  Score=86.18  Aligned_cols=76  Identities=18%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             hhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          206 IICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       206 ~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      ..+..+++|+.|++++|.+...+. ++++++|++|++++|+++.+|. + +++++|++|++++|++.++|. +.++++|.
T Consensus       145 ~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l-~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~  220 (227)
T d1h6ua2         145 SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-L-ASLPNLIEVHLKNNQISDVSP-LANTSNLF  220 (227)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-GGCTTCCEEECTTSCCCBCGG-GTTCTTCC
T ss_pred             hhhccccccccccccccccccchh-hcccccceecccCCCccCCChh-h-cCCCCCCEEECcCCcCCCCcc-cccCCCCC
Confidence            346778889999999998876654 8889999999999999998876 6 899999999999999988875 77777664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=1.9e-09  Score=92.91  Aligned_cols=121  Identities=17%  Similarity=0.099  Sum_probs=92.1

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCc----------------hhhhhhcCCCceEEEEeeCCCC
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPI----------------DWGIICLMLEFLRVLDLGSLVL  224 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~----------------~~~~~~~~l~~Lr~L~l~~~~l  224 (286)
                      ...++.+.+..+.......+..+++|++|.+.++........                .....+..++.++.|++++|.+
T Consensus       240 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l  319 (384)
T d2omza2         240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI  319 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC
T ss_pred             ccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCC
Confidence            456777777766644333445777888888776665431100                1123467788999999999999


Q ss_pred             ccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          225 IQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       225 ~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      +.++. +..+++|++|++++|+++.+| .+ +++++|++|++++|++..+|+ +.+|++|+
T Consensus       320 ~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l-~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~  376 (384)
T d2omza2         320 SDISP-VSSLTKLQRLFFANNKVSDVS-SL-ANLTNINWLSAGHNQISDLTP-LANLTRIT  376 (384)
T ss_dssp             SCCGG-GGGCTTCCEEECCSSCCCCCG-GG-GGCTTCCEEECCSSCCCBCGG-GTTCTTCS
T ss_pred             CCCcc-cccCCCCCEEECCCCCCCCCh-hH-cCCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence            98874 889999999999999999987 58 999999999999999988876 88888775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=1.2e-09  Score=91.64  Aligned_cols=114  Identities=9%  Similarity=-0.002  Sum_probs=66.1

Q ss_pred             CCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591          161 KKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR  238 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~  238 (286)
                      ...++.+.+..+...  .+..+..++.++.|.+.++....    ..+..+.++++|++|+|++|.++.+|..+..+++|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~----~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA----VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE----ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccc----cccccccccccceeeecccccccccccccccccCCC
Confidence            344555555544422  12233355666666666665543    334556666677777777777777776677777777


Q ss_pred             eeeeccccccccchhHh------hCCCCccEEecCCCCc--cccchHH
Q 048591          239 YLKLNIPSLKILPSSLL------SNLLNLYTLDMPFSYI--DHTADEF  278 (286)
Q Consensus       239 ~L~L~~~~i~~LP~~i~------~~L~~L~~L~l~~~~l--~~lP~~i  278 (286)
                      +|++++|+|+.++...|      ..+.+|+.|++.+|.+  .++|++.
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~  293 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST  293 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhH
Confidence            77777776666654321      3455667777777654  2444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.90  E-value=1e-11  Score=98.39  Aligned_cols=106  Identities=15%  Similarity=0.073  Sum_probs=81.8

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ...++++.+..+.....+.+..+++|++|.+.+|....     ++.....++.|+.|++++|.++.++ .+..+++|++|
T Consensus        47 L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~-----i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS-----CSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEE
T ss_pred             ccccceeECcccCCCCcccccCCccccChhhccccccc-----ccccccccccccccccccccccccc-ccccccccccc
Confidence            45677888877765443445578899999999887753     3344455567899999999988775 58889999999


Q ss_pred             eeccccccccch--hHhhCCCCccEEecCCCCccc
Q 048591          241 KLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       241 ~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~  273 (286)
                      ++++|+|+.++.  .+ +.+++|++|++++|.+..
T Consensus       121 ~L~~N~i~~~~~~~~l-~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         121 YMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EESEEECCCHHHHHHH-TTTTTCSEEEECSSHHHH
T ss_pred             ccccchhccccccccc-cCCCccceeecCCCcccc
Confidence            999999988874  56 899999999999997643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.86  E-value=2.6e-09  Score=89.57  Aligned_cols=111  Identities=16%  Similarity=0.042  Sum_probs=91.7

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccce
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRY  239 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~  239 (286)
                      ...++.+.+..+........ ..++++.|.+.++....    ..+..+..++.+++|++++|.+..++ ..+..+++|++
T Consensus       149 l~~L~~l~l~~n~l~~l~~~-~~~~L~~L~l~~n~~~~----~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             CTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ccccCccccccCCccccCcc-cCCccCEEECCCCcCCC----CChhHhhcccccccccccccccccccccccccccccee
Confidence            35667777777654322222 47899999999888765    55678899999999999999998764 67888999999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE  277 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~  277 (286)
                      |+|++|+|+.+|.++ .++++|++|++++|+++.+|..
T Consensus       224 L~L~~N~L~~lp~~l-~~l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         224 LHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             EECCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCCTT
T ss_pred             eeccccccccccccc-ccccCCCEEECCCCccCccChh
Confidence            999999999999999 9999999999999999888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2e-09  Score=81.61  Aligned_cols=92  Identities=15%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             eEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCc-hhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591          187 HSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL  264 (286)
Q Consensus       187 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L  264 (286)
                      .++...++...     ..+..+..+++|+.|+++++. ++.++ ..+..+++|+.|++++|+|+.+|...|..+++|++|
T Consensus        11 ~~l~c~~~~~~-----~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3          11 SGLRCTRDGAL-----DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SCEECCSSCCC-----TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CeEEecCCCCc-----cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            34555555443     345678889999999998775 98887 468899999999999999999977655999999999


Q ss_pred             ecCCCCccccchHHhhhhc
Q 048591          265 DMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       265 ~l~~~~l~~lP~~i~~L~~  283 (286)
                      +|++|++..+|.++....+
T Consensus        86 ~Ls~N~l~~l~~~~~~~~~  104 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGLS  104 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSCC
T ss_pred             eccCCCCcccChhhhcccc
Confidence            9999999999987665433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.2e-09  Score=87.47  Aligned_cols=118  Identities=13%  Similarity=0.001  Sum_probs=66.4

Q ss_pred             CCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc
Q 048591          162 KNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR  238 (286)
Q Consensus       162 ~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~  238 (286)
                      ..++.+.+..+....  ........+|+++.+.++....    ..+..|..+++|+.|++++|.++.+| ..+..+++|+
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~----i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccc----cChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            455666665554321  1223345666666666666543    33445566666666666666666554 3455566666


Q ss_pred             eeeecccccccc-chhHhhCCCCccEEecCCCCccccch-HHhhhhcc
Q 048591          239 YLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHARN  284 (286)
Q Consensus       239 ~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~~  284 (286)
                      ++++++|++..+ |..+ +.+++|++|++++|++..+|. .++.+++|
T Consensus       181 ~l~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             EEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             hhhhhhccccccChhHh-hhhhhccccccccccccccccccccccccc
Confidence            666666666555 3444 666666666666666655443 34455444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=1.3e-08  Score=80.81  Aligned_cols=116  Identities=17%  Similarity=0.086  Sum_probs=90.6

Q ss_pred             CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY  239 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~  239 (286)
                      ...+++.+.+..+...-...+..+++|+.|.+.++....     ++ .+..++.|+.|+++++.+..++ .+..+++|++
T Consensus        66 ~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~  138 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-----LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES  138 (210)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCE
T ss_pred             hCCCCCEEeCCCccccCccccccCccccccccccccccc-----cc-cccccccccccccccccccccc-cccccccccc
Confidence            356788888888875544445578899999998887753     32 5788889999999998887765 5778888999


Q ss_pred             eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591          240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT  285 (286)
Q Consensus       240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~  285 (286)
                      +++++|.+...+ .+ +++++|+++++++|++..+|. +.++++|+
T Consensus       139 l~~~~n~l~~~~-~~-~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~  181 (210)
T d1h6ta2         139 LYLGNNKITDIT-VL-SRLTKLDTLSLEDNQISDIVP-LAGLTKLQ  181 (210)
T ss_dssp             EECCSSCCCCCG-GG-GGCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             cccccccccccc-cc-ccccccccccccccccccccc-ccCCCCCC
Confidence            999998888765 46 789999999999999988874 77777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.77  E-value=1.2e-10  Score=92.16  Aligned_cols=99  Identities=17%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCC
Q 048591          179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNL  258 (286)
Q Consensus       179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L  258 (286)
                      .+..+++|+.|.+.++....     + +.+..+++|+.|++++|.++.+|.....+.+|++|++++|.++.++. + ..+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-----i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~-~~l  114 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-----I-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-I-EKL  114 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-----C-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH-H-HHH
T ss_pred             HHhcccccceeECcccCCCC-----c-ccccCCccccChhhccccccccccccccccccccccccccccccccc-c-ccc
Confidence            44478999999999988764     2 24788999999999999999999777777899999999999998864 7 899


Q ss_pred             CCccEEecCCCCccccch--HHhhhhccC
Q 048591          259 LNLYTLDMPFSYIDHTAD--EFTLHARNT  285 (286)
Q Consensus       259 ~~L~~L~l~~~~l~~lP~--~i~~L~~~~  285 (286)
                      ++|++|++++|++..+|.  .+..+++|+
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~  143 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             ccccccccccchhccccccccccCCCccc
Confidence            999999999999988874  577777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=9.1e-09  Score=82.55  Aligned_cols=99  Identities=13%  Similarity=0.066  Sum_probs=78.7

Q ss_pred             CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591          161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL  240 (286)
Q Consensus       161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L  240 (286)
                      ....+.+.+..+.......+..+++|+.|.+.++....      ...+.++++|+.|++++|.++.+|. ++.+++|++|
T Consensus       128 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L  200 (227)
T d1h6ua2         128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD------LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEV  200 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred             ccchhhhhchhhhhchhhhhcccccccccccccccccc------chhhcccccceecccCCCccCCChh-hcCCCCCCEE
Confidence            34555566655554333334478899999998887753      1347899999999999999998874 8899999999


Q ss_pred             eeccccccccchhHhhCCCCccEEecCC
Q 048591          241 KLNIPSLKILPSSLLSNLLNLYTLDMPF  268 (286)
Q Consensus       241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~  268 (286)
                      ++++|+++.+|. + +++++|++|++++
T Consensus       201 ~Ls~N~lt~i~~-l-~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQISDVSP-L-ANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCCBCGG-G-TTCTTCCEEEEEE
T ss_pred             ECcCCcCCCCcc-c-ccCCCCCEEEeeC
Confidence            999999999985 7 9999999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=1.6e-08  Score=86.89  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL  261 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L  261 (286)
                      .+++++.|.+.++....     . ..+..+++|+.|++++|.++.+| .++.+++|++|++++|+++.+|+ + ++|++|
T Consensus       305 ~~~~l~~L~ls~n~l~~-----l-~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l-~~l~~L  375 (384)
T d2omza2         305 NLKNLTYLTLYFNNISD-----I-SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-L-ANLTRI  375 (384)
T ss_dssp             GCTTCSEEECCSSCCSC-----C-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-G-TTCTTC
T ss_pred             hhcccCeEECCCCCCCC-----C-cccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-h-ccCCCC
Confidence            66778888888777654     2 23788999999999999999887 69999999999999999999986 7 999999


Q ss_pred             cEEecCCC
Q 048591          262 YTLDMPFS  269 (286)
Q Consensus       262 ~~L~l~~~  269 (286)
                      ++|+|++|
T Consensus       376 ~~L~L~~N  383 (384)
T d2omza2         376 TQLGLNDQ  383 (384)
T ss_dssp             SEEECCCE
T ss_pred             CEeeCCCC
Confidence            99999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.5e-08  Score=84.13  Aligned_cols=103  Identities=18%  Similarity=0.090  Sum_probs=86.8

Q ss_pred             cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhC
Q 048591          179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSN  257 (286)
Q Consensus       179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~  257 (286)
                      .+..+++|++|.+.++....    ..+..+.....|+.+++++|.++.+| ..+..+.+|+.|++++|+++.+|...|..
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQE----LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             hhcccccCCEEecCCccccc----ccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence            45578999999999988754    44567888999999999999999887 45778899999999999999998776689


Q ss_pred             CCCccEEecCCCCcccc-chHHhhhhccC
Q 048591          258 LLNLYTLDMPFSYIDHT-ADEFTLHARNT  285 (286)
Q Consensus       258 L~~L~~L~l~~~~l~~l-P~~i~~L~~~~  285 (286)
                      +++|+++++.+|++..+ |..+.++++++
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcc
Confidence            99999999999998655 67788777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.1e-07  Score=73.82  Aligned_cols=122  Identities=11%  Similarity=-0.068  Sum_probs=78.5

Q ss_pred             CCCCEEEEEEecCCCcccccCCCC---CCeeEEEEecCCCCCCCCchhhhhhcCCC-ceEEEEeeCCCCccCchhhcccc
Q 048591          160 SKKNVKRINVFYKQSDFVHFVDDD---SHMHSLLYFTSKSDHLDPIDWGIICLMLE-FLRVLDLGSLVLIQYPSGIENLF  235 (286)
Q Consensus       160 ~~~~~r~l~l~~~~~~~~~~~~~~---~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~L~  235 (286)
                      ...+++++.+..+..........+   ..+..+...++....    ..+..+..++ .+..|+++++.++.++.......
T Consensus       101 ~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~----i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~  176 (242)
T d1xwdc1         101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT----IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT  176 (242)
T ss_dssp             CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE----ECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC
T ss_pred             ccccccccccchhhhccccccccccccccccccccccccccc----ccccccccccccceeeecccccccccccccccch
Confidence            345677777777654322222223   333333333333322    2233444443 68889999998888887776767


Q ss_pred             cccee-eeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591          236 LLRYL-KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT  285 (286)
Q Consensus       236 ~L~~L-~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~  285 (286)
                      ++..+ .+.+|.++++|...|..+++|++|++++|++..+|.. +.++++|+
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccc
Confidence            66555 4677789999887658899999999999999888764 56665553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.23  E-value=8.7e-07  Score=74.57  Aligned_cols=101  Identities=18%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             EEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeec
Q 048591          165 KRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLN  243 (286)
Q Consensus       165 r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~  243 (286)
                      +++.+..+.. .+|+   ..++|++|.+.++....     +|.   .+.+|+.|++++|.++.++.-   ...|++|+++
T Consensus        41 ~~LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~~-----lp~---~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          41 HELELNNLGLSSLPE---LPPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             SEEECTTSCCSCCCS---CCTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             CEEEeCCCCCCCCCC---CCCCCCEEECCCCCCcc-----ccc---chhhhhhhhhhhcccchhhhh---cccccccccc
Confidence            4555555542 2332   35678888888777653     232   245677888888887766531   1358888888


Q ss_pred             cccccccchhHhhCCCCccEEecCCCCccccchHHhhh
Q 048591          244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLH  281 (286)
Q Consensus       244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L  281 (286)
                      +|.+..+|. + +++++|++|++++|.+...|..+..+
T Consensus       107 ~n~l~~lp~-~-~~l~~L~~L~l~~~~~~~~~~~~~~l  142 (353)
T d1jl5a_         107 NNQLEKLPE-L-QNSSFLKIIDVDNNSLKKLPDLPPSL  142 (353)
T ss_dssp             SSCCSSCCC-C-TTCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             ccccccccc-h-hhhccceeeccccccccccccccccc
Confidence            888888885 5 78888888888888776666544433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.18  E-value=3.7e-07  Score=76.96  Aligned_cols=68  Identities=19%  Similarity=0.117  Sum_probs=56.1

Q ss_pred             cCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591          209 LMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR  283 (286)
Q Consensus       209 ~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~  283 (286)
                      ..+++|+.|++++|.++.+|..   +.+|++|++++|+|+.+|...    .+|++|++++|+++++|.....|..
T Consensus       281 ~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~~----~~L~~L~L~~N~L~~lp~~~~~L~~  348 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELP----QNLKQLHVEYNPLREFPDIPESVED  348 (353)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             ccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCcccccc----CCCCEEECcCCcCCCCCccccccCe
Confidence            4467899999999999999964   568999999999999998754    5789999999999888765444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.3e-06  Score=68.49  Aligned_cols=85  Identities=16%  Similarity=0.097  Sum_probs=39.8

Q ss_pred             CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cc-hhhccccccceeeecc-ccccccchhHhhCCCCc
Q 048591          185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YP-SGIENLFLLRYLKLNI-PSLKILPSSLLSNLLNL  261 (286)
Q Consensus       185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp-~~i~~L~~L~~L~L~~-~~i~~LP~~i~~~L~~L  261 (286)
                      ++++|++.++....    ..+..|.++++|++|++++|.+.. +| ..+..+.+++++.+.. +++..++...|.++++|
T Consensus        30 ~l~~L~Ls~n~i~~----l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          30 NAIELRFVLTKLRV----IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             CCSEEEEESCCCCE----ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCEEECcCCcCCc----cChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            45555555555432    222345555555555555555432 22 2344455555555433 23444433322555555


Q ss_pred             cEEecCCCCccc
Q 048591          262 YTLDMPFSYIDH  273 (286)
Q Consensus       262 ~~L~l~~~~l~~  273 (286)
                      ++|++++|.+..
T Consensus       106 ~~l~l~~~~l~~  117 (242)
T d1xwdc1         106 QYLLISNTGIKH  117 (242)
T ss_dssp             CEEEEESCCCCS
T ss_pred             cccccchhhhcc
Confidence            555555555433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.6e-07  Score=66.97  Aligned_cols=69  Identities=22%  Similarity=0.038  Sum_probs=50.8

Q ss_pred             hhhhcCCCceEEEEeeCCCCccCc---hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccc
Q 048591          205 GIICLMLEFLRVLDLGSLVLIQYP---SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       205 ~~~~~~l~~Lr~L~l~~~~l~~lp---~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~  273 (286)
                      +..+..++.|++|+|++|.++.++   ..+..+++|++|++++|.|+.++.--+....+|+.|++.+|.+..
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            344567888889999998887653   456678889999999988888876221344578888888887743

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.9e-06  Score=64.95  Aligned_cols=82  Identities=22%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccceeeeccccccccch-------h
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKILPS-------S  253 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~LP~-------~  253 (286)
                      .+++|++|.+.+|.....+  .++..+..+++|+.|++++|.++.++. ......+|+.|++++|.+.....       .
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCc--hhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            5789999999999987644  455667889999999999999998875 22344579999999999865432       2


Q ss_pred             HhhCCCCccEEe
Q 048591          254 LLSNLLNLYTLD  265 (286)
Q Consensus       254 i~~~L~~L~~L~  265 (286)
                      ++..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            337789999987

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.5e-06  Score=68.79  Aligned_cols=101  Identities=17%  Similarity=-0.008  Sum_probs=59.9

Q ss_pred             CCCCeeEEEEecCCCCCCCCchhhhhh-cCCCceEEEEeeCCC--Cc--cCchhhccccccceeeecccc-cc-ccchhH
Q 048591          182 DDSHMHSLLYFTSKSDHLDPIDWGIIC-LMLEFLRVLDLGSLV--LI--QYPSGIENLFLLRYLKLNIPS-LK-ILPSSL  254 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~--l~--~lp~~i~~L~~L~~L~L~~~~-i~-~LP~~i  254 (286)
                      .+++|+.|.+.++......  .....+ ...+.|+.|+++++.  +.  .+..-...+++|++|++++|. ++ ..+..+
T Consensus       119 ~~~~L~~L~ls~c~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEK--HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHH--HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             HHHhccccccccccccccc--cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            4566666666654332100  111222 223567777777653  32  233334567889999998864 55 456677


Q ss_pred             hhCCCCccEEecCCC-Cc-cccchHHhhhhccC
Q 048591          255 LSNLLNLYTLDMPFS-YI-DHTADEFTLHARNT  285 (286)
Q Consensus       255 ~~~L~~L~~L~l~~~-~l-~~lP~~i~~L~~~~  285 (286)
                       +++++|++|++++| .+ ..-+..++++++|+
T Consensus       197 -~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         197 -FQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             -GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             -cccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence             88999999999998 45 33344566666553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.6e-05  Score=65.26  Aligned_cols=121  Identities=16%  Similarity=0.001  Sum_probs=77.8

Q ss_pred             CCEEEEEEecCCC-c---ccccC-CCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-Cc-cCchhhccc
Q 048591          162 KNVKRINVFYKQS-D---FVHFV-DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LI-QYPSGIENL  234 (286)
Q Consensus       162 ~~~r~l~l~~~~~-~---~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~~L  234 (286)
                      ..++.+.+..+.. .   ..... ...++|+.|.+.++... .....+.....++++|+.|++++|. ++ ..+..++++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             Hhccccccccccccccccchhhhcccccccchhhhcccccc-cccccccccccccccccccccccccCCCchhhhhhccc
Confidence            4567777765432 1   11111 13578999998765321 0001344556778999999999876 65 556778889


Q ss_pred             cccceeeecccc-cc-ccchhHhhCCCCccEEecCCCC-ccccchHHhhhhcc
Q 048591          235 FLLRYLKLNIPS-LK-ILPSSLLSNLLNLYTLDMPFSY-IDHTADEFTLHARN  284 (286)
Q Consensus       235 ~~L~~L~L~~~~-i~-~LP~~i~~~L~~L~~L~l~~~~-l~~lP~~i~~L~~~  284 (286)
                      ++|++|++++|. +. .-+..+ +++++|++|++++|- -..++.-...+|++
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L  251 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGIVPDGTLQLLKEALPHL  251 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCCCCHHHHHHHHHhCccc
Confidence            999999999964 54 344567 889999999999982 13344333344443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=4.2e-06  Score=72.63  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=78.7

Q ss_pred             CEEEEEEecCCCcc---cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cchhhc-c
Q 048591          163 NVKRINVFYKQSDF---VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPSGIE-N  233 (286)
Q Consensus       163 ~~r~l~l~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~-~  233 (286)
                      +++.+.+.++....   .+.++.++++++|.+.++......-..+...+..+++|+.|||++|.+..     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46778888777542   22333678999999999976521111345567899999999999998852     222222 1


Q ss_pred             ccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCccc
Q 048591          234 LFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYIDH  273 (286)
Q Consensus       234 L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~~  273 (286)
                      ..+|++|++++|.+.     .++..+ ..+++|++|++++|.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l-~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchh-hccccccccccccccchh
Confidence            247999999999875     356677 889999999999998743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=7.3e-06  Score=71.05  Aligned_cols=97  Identities=14%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchhhccccccceeeeccccccc-----cchh
Q 048591          184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKI-----LPSS  253 (286)
Q Consensus       184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~~-----LP~~  253 (286)
                      .+|++|++..+.....   .+...+..++++++|+|++|.++     .++..+...++|++|+|++|+|..     +...
T Consensus         2 ~~l~~ld~~~~~i~~~---~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCCHH---HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCChH---HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            4689999998888632   34566788899999999999976     445567788999999999998852     3333


Q ss_pred             HhhC-CCCccEEecCCCCccc-----cchHHhhhhcc
Q 048591          254 LLSN-LLNLYTLDMPFSYIDH-----TADEFTLHARN  284 (286)
Q Consensus       254 i~~~-L~~L~~L~l~~~~l~~-----lP~~i~~L~~~  284 (286)
                      + .. ..+|++|++++|.+..     ++..+..++.|
T Consensus        79 l-~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L  114 (460)
T d1z7xw1          79 L-QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL  114 (460)
T ss_dssp             T-CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTC
T ss_pred             H-hcCCCCCCEEECCCCCccccccccccchhhccccc
Confidence            3 22 3579999999998843     34444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.49  E-value=1.9e-05  Score=66.51  Aligned_cols=120  Identities=13%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             CCEEEEEEecCCCc-------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cch
Q 048591          162 KNVKRINVFYKQSD-------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPS  229 (286)
Q Consensus       162 ~~~r~l~l~~~~~~-------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~  229 (286)
                      ..++.+.+..+...       ....+...++|+.|.+.++.........+...+...++|+.|++++|.+..     +-.
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            45666777666532       112233678889998888765321101244567788889999999988762     222


Q ss_pred             hhcc--ccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCccccchHHhhh
Q 048591          230 GIEN--LFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLH  281 (286)
Q Consensus       230 ~i~~--L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L  281 (286)
                      .+..  ...|+.|++++|.|.     .+...+-.++++|++|++++|.+.+-...+..+
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~~l  324 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI  324 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHH
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHHHH
Confidence            2322  356889999998875     466666226788999999998886555544443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.99  E-value=0.00019  Score=60.11  Aligned_cols=110  Identities=17%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             CCEEEEEEecCCCc------ccccCCCCCCeeEEEEecCCCCCCCC-chhhhhhcCCCceEEEEeeCCCCc-----cCch
Q 048591          162 KNVKRINVFYKQSD------FVHFVDDDSHMHSLLYFTSKSDHLDP-IDWGIICLMLEFLRVLDLGSLVLI-----QYPS  229 (286)
Q Consensus       162 ~~~r~l~l~~~~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~  229 (286)
                      ..++.+.+..+...      +...+...+++++|.+..+....... ..+...+..+++|+.|++++|.+.     .+..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            34555666554422      11122256789999998877642100 023445778899999999999875     3455


Q ss_pred             hhccccccceeeeccccccc-----cchhHhhCC--CCccEEecCCCCcc
Q 048591          230 GIENLFLLRYLKLNIPSLKI-----LPSSLLSNL--LNLYTLDMPFSYID  272 (286)
Q Consensus       230 ~i~~L~~L~~L~L~~~~i~~-----LP~~i~~~L--~~L~~L~l~~~~l~  272 (286)
                      .+...++|++|++++|.|..     +-..+ ...  ..|++|++++|++.
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l-~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHH-HTCSSCCCCEEECCSSCCB
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHh-hhccCCCCCEEECCCCcCC
Confidence            67788899999999998753     33334 443  56999999999873

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.88  E-value=0.00032  Score=52.50  Aligned_cols=108  Identities=11%  Similarity=0.099  Sum_probs=60.4

Q ss_pred             CCEEEEEEecCC-Cc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cch
Q 048591          162 KNVKRINVFYKQ-SD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPS  229 (286)
Q Consensus       162 ~~~r~l~l~~~~-~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~  229 (286)
                      ..++.+.+.... ..      +...+...++|++|.+.++.........+...+...+.|+.|++++|.+..     +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            345666665422 21      122333566777777777665421111344555666777777777777652     223


Q ss_pred             hhccccccceeeeccccccc--------cchhHhhCCCCccEEecCCCC
Q 048591          230 GIENLFLLRYLKLNIPSLKI--------LPSSLLSNLLNLYTLDMPFSY  270 (286)
Q Consensus       230 ~i~~L~~L~~L~L~~~~i~~--------LP~~i~~~L~~L~~L~l~~~~  270 (286)
                      .+..-+.|++|+++++++..        +...+ ..-++|+.|+++.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L-~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHH-HhCCCccEeeCcCCC
Confidence            34445667777777665432        33444 556777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.92  E-value=0.0014  Score=48.79  Aligned_cols=92  Identities=13%  Similarity=-0.012  Sum_probs=65.3

Q ss_pred             CCCCeeEEEEecCCCCCCCC-chhhhhhcCCCceEEEEeeCCCCc-----cCchhhccccccceeeecccccc-----cc
Q 048591          182 DDSHMHSLLYFTSKSDHLDP-IDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK-----IL  250 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----~L  250 (286)
                      +.++|+.|.+.++....... ..+...+...+.|+.|++++|.+.     .+...+...+.|+.|++++|.|.     .+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            56889999998644222110 123456778889999999999876     23344556678999999999875     34


Q ss_pred             chhHhhCCCCccEEecCCCCcccc
Q 048591          251 PSSLLSNLLNLYTLDMPFSYIDHT  274 (286)
Q Consensus       251 P~~i~~~L~~L~~L~l~~~~l~~l  274 (286)
                      -..+ ..-++|++|++.+|.+..+
T Consensus        93 ~~aL-~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          93 LRST-LVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHHT-TTTCCCSEEECCCCSSCCC
T ss_pred             HHHH-HhCCcCCEEECCCCcCCCc
Confidence            4456 7778899999998865443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.03  E-value=0.0071  Score=44.59  Aligned_cols=109  Identities=10%  Similarity=0.108  Sum_probs=68.3

Q ss_pred             CCEEEEEEecCC-Cc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCch
Q 048591          162 KNVKRINVFYKQ-SD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPS  229 (286)
Q Consensus       162 ~~~r~l~l~~~~-~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~  229 (286)
                      +.++++.+.... ..      +...+...++|+.|.+.++.........+...+...+.++.++++++.+.     .+-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            456667776422 21      22333367888888888886643211134456677788888888888764     2334


Q ss_pred             hhccccccceeee--cccccc-----ccchhHhhCCCCccEEecCCCCc
Q 048591          230 GIENLFLLRYLKL--NIPSLK-----ILPSSLLSNLLNLYTLDMPFSYI  271 (286)
Q Consensus       230 ~i~~L~~L~~L~L--~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l  271 (286)
                      .+...+.|+.++|  +++.+.     .+...+ .+.++|++|++..+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L-~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHH-HhCCCcCEEeCcCCCC
Confidence            5566677775444  455553     466666 7888888888877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.50  E-value=0.0071  Score=44.57  Aligned_cols=89  Identities=8%  Similarity=-0.019  Sum_probs=61.6

Q ss_pred             CCCCeeEEEEecCC-CCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchhhccccccceeeecccccc-----cc
Q 048591          182 DDSHMHSLLYFTSK-SDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK-----IL  250 (286)
Q Consensus       182 ~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----~L  250 (286)
                      +.++|+.|.+.+.. .....-..+...+...++|+.|++++|.+.     .+-..+...++|++++++++.+.     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            66899999987643 321110124456678899999999999876     23334556788999999998763     55


Q ss_pred             chhHhhCCCCccEEecCC--CCc
Q 048591          251 PSSLLSNLLNLYTLDMPF--SYI  271 (286)
Q Consensus       251 P~~i~~~L~~L~~L~l~~--~~l  271 (286)
                      -..+ ...++|+.++|..  |.+
T Consensus        95 ~~~l-~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          95 VEAL-QSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHGG-GGCSSCCEEECCCCSSCC
T ss_pred             HHHH-HhCccccEEeeccCCCcC
Confidence            5666 7888998876654  444