Citrus Sinensis ID: 048601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC
Secondary Structure (PSIPRED)
ccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHcccccccccccccccEEEEEcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MERLLAVSEQEVLINFTLNSKCRANVRLIslcatspvafkvqtssphkflvnppsglvqplAQTTLQIIlkpqsqipptfprspsdrflikatvfgsadsvnslcvtlpdgstqdvKFKIAFVGPFLLRhavsngdfNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLsieidervktkdgwSELHVAAAFGRTEEISSLVrmkeyesldcrdkegrtplhlaVNKTSIGCAKVLLesgadkeakgkdgktslhnaaANGDRRMVEMLIEmgadptikddrgrscfdvardKGHIEVLEVLQRGEAVLTAARRGELEGLESLLdkgastnycdqygltplHIAAIKGHKHVVLLLIEFGadvecqdneghaplhlaveggrvEPLLFIWLKQWgtmvshsc
Flexible Loop (DISEMBL)
merllavsEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEidervktkdgwSELHVAaafgrteeisslvrMKEYESldcrdkegrtplhlavnktsIGCAKVLLESGadkeakgkdgktslhnaaangdrRMVEMLIEMgadptikddrgrSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC
Low Complexity Region (SEG)
MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESgadkeakgkdgkTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRgeleglesllDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC
Disordered region (IsUnstruct)
******VSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILK***************RFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL*******************************LI************GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV****
Disordered Region (DISOPRED)
**RLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGT*VS***
Disordered Region (DISEMBL)
MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGAD*********TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC
Disordered Region (DISPRO)
MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	418	2.2.26 [Sep-21-2011]
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.555	0.118	0.310	3e-24
Q502K3	1071	Serine/threonine-protein	yes	no	0.545	0.212	0.336	4e-24
Q8NFD2	765	Ankyrin repeat and protei	yes	no	0.617	0.337	0.313	6e-24
Q9ULJ7	1429	Ankyrin repeat domain-con	no	no	0.748	0.219	0.298	7e-24
Q8BZ25	745	Ankyrin repeat and protei	no	no	0.617	0.346	0.306	2e-23
Q5F478	990	Serine/threonine-protein	no	no	0.607	0.256	0.314	2e-23
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.555	0.053	0.302	3e-23
Q505D1	1053	Serine/threonine-protein	no	no	0.607	0.241	0.307	5e-23
O15084	1053	Serine/threonine-protein	no	no	0.607	0.241	0.307	8e-23
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.533	0.118	0.323	3e-22

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 29/261 (11%)

Query: 147 QKMILAGLSSAEAESLYRVATELAANS--EDMVSLLLRAGLSIEIDERVKTKDGWSELHV 204
           Q+++  G S   A +       LAA    ED+ + LL  G S+ I     TK G++ LHV
Sbjct: 499 QQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSI----TTKKGFTPLHV 554

Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK 264
           AA +G+ E ++SL+ +++  S D   K G TPLH+A +  +   A +LL+ GA   A  K
Sbjct: 555 AAKYGKLE-VASLL-LQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAK 612

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
           +G T LH AA      +   L+E GAD      +G +   +A  +GH++++ +       
Sbjct: 613 NGYTPLHIAAKKNQMDIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSL------- 665

Query: 325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
                         LL + A+ N  ++ GLTPLH+AA +   +V  +L+  GA V+ Q  
Sbjct: 666 --------------LLSRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTK 711

Query: 385 EGHAPLHLAVEGGRVEPLLFI 405
            G+ PLH+    G ++ + F+
Sbjct: 712 MGYTPLHVGCHYGNIKIVNFL 732

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.
Mus musculus (taxid: 10090)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 124/250 (49%), Gaps = 22/250 (8%)

Query: 162 LYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK 221
           L+R A   A+ +E  V LLLR G     D   + K   + LH+AAA   T  + +L  + 
Sbjct: 78  LHRAA---ASRNERAVGLLLRKG----ADVTARDKYWQTPLHIAAANRATRCVETL--LP 128

Query: 222 EYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM 281
              SL+  D+ GR PLH A         K+LL  GA+  A  K  +  +H AA  G   +
Sbjct: 129 HVSSLNMADRTGRAPLHHAAQSGYQEMVKLLLNKGANLSASDKKDRQPIHWAAYLGHLEV 188

Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR------------GEAVLTAAR 329
           V++L+  G+D + KD RG +    A   GH++V++ L R              A+  A  
Sbjct: 189 VKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFGNTALHVACY 248

Query: 330 RGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVL-LLIEFGADVECQDNEGHA 388
            G+      L+++GA+ N  +  G TPLH+AA+  +  + L LL+  GADV  Q  EG +
Sbjct: 249 TGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADVNMQSKEGKS 308

Query: 389 PLHLAVEGGR 398
           PLH+A   GR
Sbjct: 309 PLHMAAIHGR 318

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 134/284 (47%), Gaps = 26/284 (9%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  A  NGD    + +L       A + + E E    +      N E++  LL+    S 
Sbjct: 432 LHFAAQNGDDGTARLLLDHG----ACVDAQEREGWTPLHLAAQNNFENVARLLV----SR 483

Query: 188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRM--KEYESLDCRDKEGRTPLHLAVNKTS 245
           + D  +   +G + LHVAA FG      SLV++   +   LD + +  RTPLHLAV +  
Sbjct: 484 QADPNLHEAEGKTPLHVAAYFGHV----SLVKLLTSQGAELDAQQRNLRTPLHLAVERGK 539

Query: 246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305
           +   + LL+SGA  +A  + G   LH AAA G   + +ML+  GA   +   +G +   +
Sbjct: 540 VRAIQHLLKSGAVPDALDQSGYGPLHTAAARGKYLICKMLLRYGASLELPTHQGWTPLHL 599

Query: 306 ARDKGHIEVLEVLQRGEAVL------------TAARRGELEGLESLLDKGASTNYCDQYG 353
           A  KGH+E++ +L    A +             AAR GE   + +LL  GA  N  +Q G
Sbjct: 600 AAYKGHLEIIHLLAESHANMGALGAVNWTPLHLAARHGEEAVVSALLQCGADPNAAEQSG 659

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
            TPLH+A  +     V+ L+E  A+V  ++  G  P HLA   G
Sbjct: 660 WTPLHLAVQRSTFLSVINLLEHHANVHARNKVGWTPAHLAALKG 703

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score =  112 bits (279), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 162/359 (45%), Gaps = 46/359 (12%)

Query: 60  PLAQTTLQIILKPQSQIPPTFPRSPSDRF-LIKATVFGSADSVNSLCVTLPDGSTQDVKF 118
           P  Q  LQ+++K  + +      S  DR   I        DS+ +L   L +G++ +   
Sbjct: 491 PKEQEVLQLLVKAGAHV-----NSEDDRTSCIVRQALEREDSIRTL---LDNGASVN--- 539

Query: 119 KIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVS 178
           +    G  LL +A  +G  + V  ++ R     A L   +A     +          +V+
Sbjct: 540 QCDSNGRTLLANAAYSGSLDVVNLLVSRG----ADLEIEDAHGHTPLTLAARQGHTKVVN 595

Query: 179 LLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLH 238
            L+  G +I   +    +DGW+ L  AA  G TE +S+L+       +DC D + RT L 
Sbjct: 596 CLIGCGANINHTD----QDGWTALRSAAWGGHTEVVSALLYAGV--KVDCADADSRTALR 649

Query: 239 LAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR 298
            A           LL+ GA+      +G+T+L  AA  G R +VE L++ GA+   +D  
Sbjct: 650 AAAWGGHEDIVLNLLQHGAEVNKADNEGRTALIAAAYMGHREIVEHLLDHGAEVNHEDVD 709

Query: 299 GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH 358
           GR+   VA                A+   A +G    +  L+D+GA  ++CD+ G+TPL 
Sbjct: 710 GRTALSVA----------------ALCVPASKGHASVVSLLIDRGAEVDHCDKDGMTPLL 753

Query: 359 IAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR---VEPLLFIWLKQWGTMV 414
           +AA +GH  VV LL+E GADV+  DN G  PL  A   G    V  LLF     WG  V
Sbjct: 754 VAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLAAASMGHASVVNTLLF-----WGAAV 807

Homo sapiens (taxid: 9606)

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 135/284 (47%), Gaps = 26/284 (9%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  A  NGD +  + +L    ++    ++ E E    +      N E++  LL+    S 
Sbjct: 440 LHFAAQNGDDHTARLLLDHGALV----NAREHEGWTPLHLAAQNNFENVARLLV----SR 491

Query: 188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRM--KEYESLDCRDKEGRTPLHLAVNKTS 245
           + D      +G + LHVAA FG       LV++   +   LD + +  RTPLHLAV +  
Sbjct: 492 QADLSPHEAEGKTPLHVAAYFGHI----GLVKLLSGQGAELDAQQRNLRTPLHLAVERGK 547

Query: 246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305
           +   + LL+ GA  +A    G + LH AAA G   + +ML+  GA   ++  +G +   +
Sbjct: 548 VRAIQHLLKCGALPDALDHSGYSPLHIAAARGKDLIFKMLLRYGASLELRTQQGWTPLHL 607

Query: 306 ARDKGHIEVLEVLQRGEAVLT------------AARRGELEGLESLLDKGASTNYCDQYG 353
           A  KGH+E++  L +    L             AA +GE   + +LL  GA+ N  +Q G
Sbjct: 608 ATYKGHLEIIHQLAKSHVDLDALGSMQWTPLHLAAFQGEEGVMLALLQCGANPNAAEQSG 667

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
            TPLH+A  KG    +  L+E+GAD+   +  G  P HLA   G
Sbjct: 668 WTPLHLAVHKGTFLGITHLLEYGADIHACNKVGWTPAHLAALKG 711

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 141/280 (50%), Gaps = 26/280 (9%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  A+ +GD   ++ ++ + + + A    AE  +   VA+ L     D++ LL+ +G   
Sbjct: 12  LVQAIFSGDPEEIRMLIYKTEDVNA--LDAEKRTPLHVASFLG--DADIIELLILSG--- 64

Query: 188 EIDERVKTKDG-W-SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS 245
               RV  KD  W + LH A A  R+EE +  V +K    ++ RDK  +TPLH+A    +
Sbjct: 65  ---ARVNAKDNMWLTPLHRAVA-SRSEE-AVQVLIKHSADVNARDKNWQTPLHVAAANKA 119

Query: 246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305
           + CA++++   +      + G+T+LH+AA NG   MV +L+  GA+    D + R     
Sbjct: 120 LKCAEIIIPMLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHW 179

Query: 306 ARDKGHIEVLEVLQRGEAVLT------------AARRGELEGLESLLDKGASTNYCDQYG 353
           A   GH+EV+ +L    A +T            AA  G++  ++ LL+ G   +  + YG
Sbjct: 180 AAYMGHLEVVALLINHGAEVTCKDKKGYTPLHAAASNGQINIVKHLLNLGVEIDEMNIYG 239

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
            T LHIA   G   VV  LI++GA+V   +N G  PLH A
Sbjct: 240 NTALHIACYNGQDSVVNELIDYGANVNQPNNNGFTPLHFA 279

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 29/261 (11%)

Query: 147 QKMILAGLSSAEAESLYRVATELAANS--EDMVSLLLRAGLSIEIDERVKTKDGWSELHV 204
           Q+++  G S   A +       L+A    ED+ + LL  G S+ I     TK G++ LHV
Sbjct: 516 QQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSI----TTKKGFTPLHV 571

Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK 264
           AA +G+ E +++L+ +++  S D   K G TPLH+A +  +   A +LL+ GA   A  K
Sbjct: 572 AAKYGKLE-VANLL-LQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAK 629

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
           +G T LH AA      +   L+E GAD      +G +   +A  +GH++++ +       
Sbjct: 630 NGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSL------- 682

Query: 325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
                         LL + A+ N  ++ GLTPLH+AA +   +V  +L+  GA V+ Q  
Sbjct: 683 --------------LLGRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTK 728

Query: 385 EGHAPLHLAVEGGRVEPLLFI 405
            G+ PLH+    G ++ + F+
Sbjct: 729 MGYTPLHVGCHYGNIKIVNFL 749

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 26/280 (9%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  A+ NGD + V++++ +++ +       E  +    A  L     +++ LL+ +G   
Sbjct: 12  LVQAIFNGDPDEVRALIFKKEDV--NFQDNEKRTPLHAAAYLG--DAEIIELLILSG--- 64

Query: 188 EIDERVKTKDG-W-SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS 245
               RV  KD  W + LH A A    E +  L  +K    ++ RDK  +TPLH+A    +
Sbjct: 65  ---ARVNAKDSKWLTPLHRAVASCSEEAVQIL--LKHSADVNARDKNWQTPLHIAAANKA 119

Query: 246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305
           + CA+ L+   ++     + G+T+LH+AA +G   MV++L+  GA+    D + R     
Sbjct: 120 VKCAESLVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHW 179

Query: 306 ARDKGHIEVLEVLQRGEAVLT------------AARRGELEGLESLLDKGASTNYCDQYG 353
           A   GHIEV+++L    A +T            AA  G +  ++ LLD G   N  + YG
Sbjct: 180 AAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYG 239

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
            TPLH+A   G   VV  LI+ GA+V  ++ +G  PLH A
Sbjct: 240 NTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFA 279

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score =  108 bits (270), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 26/280 (9%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  A+ NGD + V++++ +++ +       E  +    A  L     +++ LL+ +G   
Sbjct: 12  LVQAIFNGDPDEVRALIFKKEDV--NFQDNEKRTPLHAAAYLG--DAEIIELLILSG--- 64

Query: 188 EIDERVKTKDG-W-SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS 245
               RV  KD  W + LH A A    E +   V +K    ++ RDK  +TPLH+A    +
Sbjct: 65  ---ARVNAKDSKWLTPLHRAVASCSEEAVQ--VLLKHSADVNARDKNWQTPLHIAAANKA 119

Query: 246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305
           + CA+ L+   ++     + G+T+LH+AA +G   MV++L+  GA+    D + R     
Sbjct: 120 VKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHW 179

Query: 306 ARDKGHIEVLEVLQRGEAVLT------------AARRGELEGLESLLDKGASTNYCDQYG 353
           A   GHIEV+++L    A +T            AA  G +  ++ LLD G   N  + YG
Sbjct: 180 AAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYG 239

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
            TPLH+A   G   VV  LI+ GA V  ++ +G  PLH A
Sbjct: 240 NTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFA 279

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 18/241 (7%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
           N   ++ LLL+ G SI+      T+ G + LHVA+  G    + +L  ++   S +  + 
Sbjct: 382 NHVRVMELLLKTGASID----AVTESGLTPLHVASFMGHLPIVKNL--LQRGASPNVSNV 435

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           +  TPLH+A        AK LL++ A   AK KD +T LH AA  G   MV++L+E  A+
Sbjct: 436 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 495

Query: 292 PTIKDDRGRSCFDVARDKGHIE-VLEVLQR--GEAVLT---------AARRGELEGLESL 339
           P +    G +   +A  +GH+E VL +L++   +A +T         AA+ G++   E L
Sbjct: 496 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 555

Query: 340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
           L++ A  N   + GLTPLH+A    +  +V LL+  G         G+ PLH+A +  +V
Sbjct: 556 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 615

Query: 400 E 400
           E
Sbjct: 616 E 616

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
255559505	469	ankyrin repeat-containing protein, putat	0.940	0.837	0.627	1e-137
225448530	470	PREDICTED: ankyrin-3-like [Vitis vinifer	0.933	0.829	0.582	1e-125
147804657	989	hypothetical protein VITISV_042402 [Viti	0.933	0.394	0.582	1e-125
224112449	328	predicted protein [Populus trichocarpa]	0.736	0.939	0.616	1e-105
297736566	399	unnamed protein product [Vitis vinifera]	0.789	0.827	0.509	2e-98
242059119	406	hypothetical protein SORBIDRAFT_03g03869	0.777	0.800	0.421	2e-63
125531293	450	hypothetical protein OsI_32899 [Oryza sa	0.782	0.726	0.413	1e-62
115440815	426	Os01g0829100 [Oryza sativa Japonica Grou	0.782	0.767	0.408	1e-62
326533474	418	predicted protein [Hordeum vulgare subsp	0.765	0.765	0.410	2e-62
357516167	361	Ankyrin repeat domain-containing protein	0.772	0.894	0.429	7e-62

>gi|255559505|ref|XP_002520772.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223539903|gb|EEF41481.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/413 (62%), Positives = 317/413 (76%), Gaps = 20/413 (4%)

Query: 4   LLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQ 63
           L+ VS++EV +NF LN+KCRAN+ L SL +T+ VAFKVQTSSP KFLVNPP+G V P + 
Sbjct: 7   LVQVSDKEVRLNFALNTKCRANITLSSLSSTTLVAFKVQTSSPRKFLVNPPTGFVSPSSS 66

Query: 64  TTLQIILKPQSQIPPTFPRSPSDRFLIKATVF-------GSADSVNSLCVTLPDG-STQD 115
           TT+QIILKPQ+ +PPTFPRSP+D FLIK   F          DS+N    +LP G  TQ 
Sbjct: 67  TTVQIILKPQTHLPPTFPRSPADSFLIKTAPFTHNHRPDDDDDSLNCWFSSLPHGLVTQS 126

Query: 116 VKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSED 175
            K K+AFVGPFLLRHAV+ GD N+ K+I+K+Q+ +LA L   EAESL RVATELA + E+
Sbjct: 127 FKLKVAFVGPFLLRHAVTCGDVNSAKNIIKKQRSVLAELPPVEAESLLRVATELA-HPEN 185

Query: 176 MVSLLLRAGLSI--------EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLD 227
           MV+LLL AGL I        E+D + ++K GWSELHVA AF R EE+ +LV+   +  LD
Sbjct: 186 MVNLLLEAGLKIDARVKVDNEVDNKWESK-GWSELHVAVAFNRMEEVLNLVQT--FVPLD 242

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
            RD+EGRTPLHLA ++ +I CAKVL+ESGADK+A+ KDG+T L+ AAANGDRRMVEMLIE
Sbjct: 243 LRDREGRTPLHLAASRGNIRCAKVLVESGADKDARSKDGRTVLYRAAANGDRRMVEMLIE 302

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347
           MGADPTI DDRGRS FDVARDKGH E++ +L++GE VL AAR G+L+ LESLL KGA+  
Sbjct: 303 MGADPTIADDRGRSAFDVARDKGHEEIVGILEQGEDVLRAARGGDLKLLESLLRKGANAK 362

Query: 348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           Y DQYGLT LH AAIKGHK +V +L+E G DVECQDNEGH+P+HLAVEGG +E
Sbjct: 363 YHDQYGLTSLHAAAIKGHKKIVAMLVEIGVDVECQDNEGHSPIHLAVEGGSLE 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448530|ref|XP_002273407.1| PREDICTED: ankyrin-3-like [Vitis vinifera]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/417 (58%), Positives = 306/417 (73%), Gaps = 27/417 (6%)

Query: 3   RLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLA 62
           RL+ VS+ EV I+F L  KCRANVRL SL A +P+AFKVQTSSP KFLV+PP+GL+ PL+
Sbjct: 5   RLVEVSDHEVRIDFALGCKCRANVRLTSLSANTPIAFKVQTSSPQKFLVSPPTGLIPPLS 64

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIK-------ATVFGSADSVNSLCVTLPDGSTQD 115
               Q+ILKPQSQ P  FPRSP+DRFLIK       +T     DS+NS   + P   TQD
Sbjct: 65  SAAFQVILKPQSQPPAMFPRSPTDRFLIKTALAAEFSTQSTQPDSINSWFASRP---TQD 121

Query: 116 VKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSED 175
           +K K+ FVGPFLLRHAV+ GD +A ++++KRQK ++A +   EAESL  VA++    S +
Sbjct: 122 LKLKVVFVGPFLLRHAVAAGDVDAARNLIKRQKSVVAEMLPREAESLLGVASK----SNE 177

Query: 176 MVSLLLRAGL-----------SIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE 224
           MV LL+ AGL           S+E + R  +K GW+ +HVAAAF RTEE++ LV++    
Sbjct: 178 MVELLVEAGLKSEARAKIDKMSLEEETRWASK-GWTGIHVAAAFDRTEELARLVKLLGSG 236

Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEM 284
            LD RD EGRT LHLAV+K +I CA+ L+E+GADK+AK KDG+T+L+ AA+NGDR M EM
Sbjct: 237 PLDFRDNEGRTALHLAVSKGNIQCARTLVEAGADKDAKSKDGRTALYRAASNGDRPMAEM 296

Query: 285 LIEMGADPTIK-DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           LI++GADPTI    RGRS  D+ARDKGH E++E+L++GE VLT ARRGEL+ LE LL +G
Sbjct: 297 LIQIGADPTITAGHRGRSPLDIARDKGHKEIVEILEQGETVLTTARRGELKPLELLLQRG 356

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           AS N+ DQYGLT LH+AAIKGHK V LLLI FG  +ECQD+EGHAPLHLAVEGG +E
Sbjct: 357 ASINHRDQYGLTALHVAAIKGHKDVALLLIRFGLGLECQDSEGHAPLHLAVEGGSME 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804657|emb|CAN73340.1| hypothetical protein VITISV_042402 [Vitis vinifera]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/417 (58%), Positives = 306/417 (73%), Gaps = 27/417 (6%)

Query: 3   RLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLA 62
           RL+ VS+ EV I+F L  KCRANVRL SL A +P+AFKVQTSSP KFLV+PP+GL+ PL+
Sbjct: 5   RLVEVSDHEVRIDFALGCKCRANVRLTSLSANTPIAFKVQTSSPQKFLVSPPTGLIPPLS 64

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIK-------ATVFGSADSVNSLCVTLPDGSTQD 115
               Q+ILKPQSQ P  FPRSP+DRFLIK       +T     DS+NS   + P   TQD
Sbjct: 65  SAAFQVILKPQSQPPAMFPRSPTDRFLIKTALAXEFSTXSTQPDSINSWFASRP---TQD 121

Query: 116 VKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSED 175
           +K K+ FVGPFLLRHAV+ GD +A ++++KRQK ++A +   EAESL  VA++    S +
Sbjct: 122 LKLKVVFVGPFLLRHAVAAGDVDAARNLIKRQKSVVAEMLPREAESLLGVASK----SNE 177

Query: 176 MVSLLLRAGL-----------SIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE 224
           MV LL+ AGL           S+E + R  +K GW+ +HVAAAF RTEE++ LV++    
Sbjct: 178 MVELLVEAGLKSEARAKIDKMSLEEETRWASK-GWTGIHVAAAFDRTEELARLVKLLGSG 236

Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEM 284
            LD RD EGRT LHLAV+K +I CA+ L+E+GADK+AK KDG+T+L+ AA+NGDR M EM
Sbjct: 237 PLDFRDNEGRTALHLAVSKGNIQCARTLVEAGADKDAKSKDGRTALYRAASNGDRPMAEM 296

Query: 285 LIEMGADPTIK-DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           LI++GADPTI    RGRS  D+ARDKGH E++E+L++GE VLT ARRGEL+ LE LL +G
Sbjct: 297 LIQIGADPTITAGHRGRSPLDIARDKGHKEIVEILEQGETVLTTARRGELKPLELLLQRG 356

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           AS N+ DQYGLT LH+AAIKGHK V LLLI FG  +ECQD+EGHAPLHLAVEGG +E
Sbjct: 357 ASINHRDQYGLTALHVAAIKGHKDVALLLIRFGLGLECQDSEGHAPLHLAVEGGSME 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112449|ref|XP_002316195.1| predicted protein [Populus trichocarpa] gi|222865235|gb|EEF02366.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/331 (61%), Positives = 249/331 (75%), Gaps = 23/331 (6%)

Query: 1   MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQP 60
           MERL+ +S+ EV I+F L SKCRA VRL SLCAT+PVAFK+QTSSPHKFLVNPP+GL+ P
Sbjct: 1   MERLVELSDTEVRIDFLLYSKCRATVRLRSLCATAPVAFKIQTSSPHKFLVNPPTGLISP 60

Query: 61  LAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGS-------ADSVNSLCVTLPDGST 113
           L+  T QI+L+PQ+Q+PPTFPRSPSDRFLIK   F S        DS+ S   +LP  ST
Sbjct: 61  LSFATFQIVLRPQNQLPPTFPRSPSDRFLIKTAPFASNSPCSTHPDSLASWFSSLPLDST 120

Query: 114 QDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANS 173
           QD K K+AFVGPFLLRHAVS GD ++VK+ILKRQK IL+ L+  +AESL RVAT L  NS
Sbjct: 121 QDFKLKVAFVGPFLLRHAVSCGDADSVKNILKRQKTILSELTQRDAESLLRVATAL-DNS 179

Query: 174 EDMVSLLLRAGLSI------------EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK 221
           E +V+LLL  GL I            ++D R ++K GWS+LHVAAA  R +++  L  +K
Sbjct: 180 EVVVNLLLEGGLKIDACVTAGGVGSYQVDPRWESK-GWSDLHVAAALDRADDVLDL--LK 236

Query: 222 EYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM 281
               LD RDKEGRTPLHLA ++ +I CAK+L+ES ADK+AK KDG+T+L+ AAANGDRRM
Sbjct: 237 GSGPLDLRDKEGRTPLHLASSRGNIKCAKLLVESDADKDAKSKDGRTALYRAAANGDRRM 296

Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
           VEMLI++GADPTI DDRGRS  D ARDKGH+
Sbjct: 297 VEMLIDVGADPTIPDDRGRSAMDAARDKGHV 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736566|emb|CBI25437.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/406 (50%), Positives = 254/406 (62%), Gaps = 76/406 (18%)

Query: 3   RLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLA 62
           RL+ VS+ EV I+F L  KCRANVRL SL A +P+AFKVQTSSP KFLV+PP+GL+ PL+
Sbjct: 5   RLVEVSDHEVRIDFALGCKCRANVRLTSLSANTPIAFKVQTSSPQKFLVSPPTGLIPPLS 64

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIK-------ATVFGSADSVNSLCVTLPDGSTQD 115
               Q+ILKPQSQ P  FPRSP+DRFLIK       +T     DS+NS   + P   TQD
Sbjct: 65  SAAFQVILKPQSQPPAMFPRSPTDRFLIKTALAAEFSTQSTQPDSINSWFASRP---TQD 121

Query: 116 VKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSED 175
           +K K+ FVGPFLLRHAV+ GD            ++ AGL S           E  A  + 
Sbjct: 122 LKLKVVFVGPFLLRHAVAAGDL-----------LVEAGLKS-----------EARAKIDK 159

Query: 176 MVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRT 235
           M         S+E + R  +K GW+ +HVAAAF RTEE++ LV++     LD RD EGRT
Sbjct: 160 M---------SLEEETRWASK-GWTGIHVAAAFDRTEELARLVKLLGSGPLDFRDNEGRT 209

Query: 236 PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIK 295
            LHLAV+K +I CA+ L+E+GAD                                 PTI 
Sbjct: 210 ALHLAVSKGNIQCARTLVEAGAD---------------------------------PTIT 236

Query: 296 -DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGL 354
              RGRS  D+ARDKGH E++E+L++GE VLT ARRGEL+ LE LL +GAS N+ DQYGL
Sbjct: 237 AGHRGRSPLDIARDKGHKEIVEILEQGETVLTTARRGELKPLELLLQRGASINHRDQYGL 296

Query: 355 TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           T LH+AAIKGHK V LLLI FG  +ECQD+EGHAPLHLAVEGG +E
Sbjct: 297 TALHVAAIKGHKDVALLLIRFGLGLECQDSEGHAPLHLAVEGGSME 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059119|ref|XP_002458705.1| hypothetical protein SORBIDRAFT_03g038690 [Sorghum bicolor] gi|241930680|gb|EES03825.1| hypothetical protein SORBIDRAFT_03g038690 [Sorghum bicolor]

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 168/399 (42%), Positives = 217/399 (54%), Gaps = 74/399 (18%)

Query: 3   RLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLA 62
           RLL V E EV+I+F  N+KCRA++RL SL  + PVAFKVQTSSP KFLV+PP G V PL+
Sbjct: 17  RLLEVEEDEVVIDFKPNAKCRADLRLRSLHPSLPVAFKVQTSSPLKFLVSPPRGAVPPLS 76

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAF 122
             +L+++L+PQ+  PP+FPRS +DRFL+ +++  SA  ++S  V   D     V+ ++ F
Sbjct: 77  TASLRVVLRPQAHPPPSFPRSRADRFLVLSSL--SAARLDS-AVGSDDDDVSAVRLRVFF 133

Query: 123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLR 182
            GP+LLR A   GD  AV+ IL+RQ  +L  L   +A                       
Sbjct: 134 GGPYLLRLAADAGDAAAVRLILRRQPHLLPFLDHLQA----------------------- 170

Query: 183 AGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN 242
                         + W+ LH AAA G   E    VR    ++L  RD+EGRT LH A  
Sbjct: 171 ----------ADAAEQWAPLHAAAARGDCGE----VRRLGPDALAARDREGRTVLHAAAA 216

Query: 243 KTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSC 302
                   VL++ GAD  A    G+T L                                
Sbjct: 217 AGEAEAVAVLVDMGADTSAVDARGRTPL-------------------------------- 244

Query: 303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAI 362
            DVAR+KG+ EV++VL+R E V+TAARRG+L  LESLL K A+    DQYGLT LH+AAI
Sbjct: 245 -DVAREKGYQEVVDVLERWELVMTAARRGDLGSLESLLSKRAAVCGRDQYGLTALHLAAI 303

Query: 363 KGHKHVVLLLIEFGA-DVECQDNEGHAPLHLAVEGGRVE 400
           KGH   + LL   G  DVEC+D EGH PLHLAVEGG  E
Sbjct: 304 KGHCDAIALLAGSGCMDVECEDVEGHRPLHLAVEGGHAE 342

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125531293|gb|EAY77858.1| hypothetical protein OsI_32899 [Oryza sativa Indica Group]

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 167/404 (41%), Positives = 219/404 (54%), Gaps = 77/404 (19%)

Query: 1   MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQP 60
           +E+LL V+E EV+I+F  N+KCRA++RL SL  + PVAFKVQTSSP KFLV+PP G VQP
Sbjct: 32  VEQLLEVAEDEVVIDFKPNAKCRADLRLRSLHPSLPVAFKVQTSSPLKFLVSPPRGAVQP 91

Query: 61  LAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKI 120
           L+  +L+++L+PQ   P +FPRS  DRFL+ +++  +    ++       G T  ++ ++
Sbjct: 92  LSSASLRVVLRPQQHAPASFPRSRGDRFLVLSSLSAAHLDSSASSSAA-TGGTTAIRLRV 150

Query: 121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLL 180
            F GP+LLR A   GD  AV+ IL+RQ  +L  L    A                     
Sbjct: 151 FFGGPYLLRLAAEAGDAAAVRLILRRQPHLLPLLEPEAA--------------------- 189

Query: 181 LRAGLSIEIDERVKTKDG---WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPL 237
                           DG   W+ LH AAA G T E    VR    +S+  RD+EGRT L
Sbjct: 190 --------------VPDGAEQWAPLHAAAARGDTGE----VRRLGPDSMGARDREGRTAL 231

Query: 238 HLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD 297
           H+A        A  L++ GAD  A    G+T L                           
Sbjct: 232 HVAAAAGEAEAAAALVDMGADAAATDARGRTPL--------------------------- 264

Query: 298 RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL 357
                 DVAR+KG+ EV++VL+R E V+TAARRG+L+ LESLL K A     DQYGLT L
Sbjct: 265 ------DVAREKGYQEVVDVLERWELVMTAARRGDLQSLESLLSKRAGVRGRDQYGLTAL 318

Query: 358 HIAAIKGHKHVVLLLIEFGA-DVECQDNEGHAPLHLAVEGGRVE 400
           H+AAIKGH  V+ LL   G  D+EC+D EGH PLHLAVEGG  E
Sbjct: 319 HLAAIKGHCDVIALLAGSGCMDIECEDVEGHRPLHLAVEGGSAE 362

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440815|ref|NP_001044687.1| Os01g0829100 [Oryza sativa Japonica Group] gi|15624058|dbj|BAB68111.1| protein kinase-like [Oryza sativa Japonica Group] gi|20160634|dbj|BAB89579.1| protein kinase-like [Oryza sativa Japonica Group] gi|113534218|dbj|BAF06601.1| Os01g0829100 [Oryza sativa Japonica Group] gi|125572504|gb|EAZ14019.1| hypothetical protein OsJ_03944 [Oryza sativa Japonica Group] gi|215765824|dbj|BAG87521.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/404 (40%), Positives = 218/404 (53%), Gaps = 77/404 (19%)

Query: 1   MERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQP 60
           +E+LL V+E EV+I+F  N+KCRA++RL SL  + PVAFKVQTSSP KFLV+PP G VQP
Sbjct: 32  VEQLLEVAEDEVVIDFKPNAKCRADLRLRSLHPSLPVAFKVQTSSPLKFLVSPPRGAVQP 91

Query: 61  LAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKI 120
           L+  +L+++L+PQ   P +FPRS  DRFL+ +++  +    ++       G T  ++ ++
Sbjct: 92  LSSASLRVVLRPQQHAPASFPRSRGDRFLVLSSLSAAHLDSSASSSAA-TGGTTAIRLRV 150

Query: 121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLL 180
            F GP+LLR A   GD  AV+ IL+RQ  +L  L    A                     
Sbjct: 151 FFGGPYLLRLAAEAGDAAAVRLILRRQPHLLPLLEPEAA--------------------- 189

Query: 181 LRAGLSIEIDERVKTKDG---WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPL 237
                           DG   W+ LH  AA G T E+  L      +S+  RD+EGRT L
Sbjct: 190 --------------VPDGAEQWAPLHAVAARGDTGEVRRL----GPDSMGARDREGRTAL 231

Query: 238 HLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD 297
           H+A        A  L++ GAD  A    G+T L                           
Sbjct: 232 HVAAAAGEAEAAAALVDMGADAAATDARGRTPL--------------------------- 264

Query: 298 RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL 357
                 DVAR+KG+ EV++VL+R E V+TAARRG+L+ LESLL K A     DQYGLT L
Sbjct: 265 ------DVAREKGYQEVVDVLERWELVMTAARRGDLQSLESLLSKRAGVRGRDQYGLTAL 318

Query: 358 HIAAIKGHKHVVLLLIEFGA-DVECQDNEGHAPLHLAVEGGRVE 400
           H+AAIKGH  V+ LL   G  D+EC+D EGH PLHLAVEGG  E
Sbjct: 319 HLAAIKGHCDVIALLAGSGCMDIECEDVEGHRPLHLAVEGGSAE 362

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326533474|dbj|BAK05268.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/397 (41%), Positives = 219/397 (55%), Gaps = 77/397 (19%)

Query: 2   ERLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPL 61
           ++LL V+E+EV+++F  +SKCR ++RL SL  T PVAFKVQTSSP KFLV+PP G +QPL
Sbjct: 28  QQLLEVAEEEVVVDFKPSSKCRVDLRLRSLHPTLPVAFKVQTSSPLKFLVSPPRGALQPL 87

Query: 62  AQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIA 121
           +  T++++L+PQ   PP+FPRS +DRFL+ +++  SA  ++S   ++P G+   ++ ++ 
Sbjct: 88  SSATIRVVLRPQPHAPPSFPRSRADRFLVLSSL--SAAHLDS-AASVPGGA---IRLRVF 141

Query: 122 FVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLL 181
           F GP+LLR A   GD  AV+ IL+RQ  +L  L    A                      
Sbjct: 142 FGGPYLLRLAADAGDSAAVRLILRRQPHLLPVLDPEAA---------------------- 179

Query: 182 RAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV 241
                      V   + W+ LH AAA G   E+  L +    E+L  RDK+GRT LH+A 
Sbjct: 180 -----------VPEAEQWAPLHAAAARGDYGEVRRLGQ----EALAVRDKDGRTALHVAA 224

Query: 242 NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS 301
                     L++ GAD  A    G+T L                               
Sbjct: 225 AAGEAEAVAELVDMGADSAAADARGRTPL------------------------------- 253

Query: 302 CFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAA 361
             DVAR+KG+ EV++VLQR E V+TAARRG+L  LE LL K       DQYGLT LH+AA
Sbjct: 254 --DVAREKGYKEVVDVLQRWELVMTAARRGDLRSLELLLAKRTGLRGRDQYGLTALHVAA 311

Query: 362 IKGHKHVVLLLIEFGA-DVECQDNEGHAPLHLAVEGG 397
           IKGH   + LL   G  DVEC+D EGH PLHLAVEGG
Sbjct: 312 IKGHCDAIALLAGSGCMDVECEDVEGHRPLHLAVEGG 348

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516167|ref|XP_003628372.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355522394|gb|AET02848.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  244 bits (622), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 153/356 (42%), Positives = 206/356 (57%), Gaps = 33/356 (9%)

Query: 1   MERLLAVSE-QEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQ 59
           ME+L+ V E  EV I FTLNSKCR  ++L SL  T+P+AFK+QTSSPHKFLVNPP+GL+ 
Sbjct: 3   MEKLVEVCEPAEVRIEFTLNSKCRTTIQLKSLNPTNPIAFKIQTSSPHKFLVNPPTGLIP 62

Query: 60  PLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGS----ADSVNSLCVTLPDG-STQ 114
           PL+ +T Q+ILKPQS +PP++PRSP DRFLIK   F +     DS+N+   +   G ST 
Sbjct: 63  PLSMSTFQVILKPQSHLPPSYPRSPKDRFLIKTAEFTANSSDNDSINAWFASCSYGLSTY 122

Query: 115 DVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSE 174
           D+K K+AFVG FLL  AVS GD   V+S++KRQ+ ++  LS  E+ESL RVATEL A+ +
Sbjct: 123 DIKLKVAFVGSFLLCDAVSRGDLECVRSLIKRQRSVVLDLSLKESESLLRVATEL-AHPD 181

Query: 175 DMVSLLLRAGLSIEID---ERVKTKDGW----------SELHV-----------AAAFGR 210
           DMV LLL AGL +      ++ K  D             E HV           A+  G 
Sbjct: 182 DMVHLLLEAGLRVHEAVGFDKFKGSDDVPVVGGNVARDEEQHVEDVEHGELMLEASRHGN 241

Query: 211 TEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSL 270
             E+  L+R     +L+ RD  G T LH A  K     A +L E G D E +  +G   L
Sbjct: 242 VREVELLLRRG--VNLNYRDHYGLTALHAAAFKGHTNVALMLSEVGLDLECEDDEGNVPL 299

Query: 271 HNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLT 326
           H A  +GD   V + +E G +    + RG +   +AR  G+ +V ++L    A+ T
Sbjct: 300 HMAVESGDVETVRVFVEKGVNLNAMNKRGVTPLYMARVWGYEDVCQLLMSKGALST 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
UNIPROTKB|F1NXP5	745	F1NXP5 "Uncharacterized protei	0.626	0.351	0.292	5.2e-19
UNIPROTKB|F1NNF9	765	F1NNF9 "Uncharacterized protei	0.626	0.342	0.292	5.7e-19
MGI|MGI:3045243	993	Ankrd44 "ankyrin repeat domain	0.607	0.255	0.296	8.9e-19
ZFIN|ZDB-GENE-060621-1	3980	ank3a "ankyrin 3a" [Danio reri	0.684	0.071	0.289	1.3e-18
MGI|MGI:2145661	1053	Ankrd28 "ankyrin repeat domain	0.612	0.243	0.293	1.3e-18
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.543	0.211	0.310	1.3e-18
UNIPROTKB|O15084	1053	ANKRD28 "Serine/threonine-prot	0.612	0.243	0.293	2.2e-18
UNIPROTKB|E2RTI6	765	ANKK1 "Uncharacterized protein	0.633	0.346	0.292	5.1e-18
UNIPROTKB|Q8N8A2	993	ANKRD44 "Serine/threonine-prot	0.607	0.255	0.292	5.9e-18
ZFIN|ZDB-GENE-071015-4	733	ankk1 "ankyrin repeat and kina	0.791	0.451	0.263	1e-17

UNIPROTKB|F1NXP5 F1NXP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
 Identities = 83/284 (29%), Positives = 125/284 (44%)

Query:   128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
             L  A  NGD   V+ +L  Q    A +++ E +      T L   S++    + R  LS 
Sbjct:   440 LHFAAQNGDDRIVRLLLDHQ----ARVNAQEHDGW----TPLHLASQNNFENVARVLLSR 491

Query:   188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG 247
             + D   +  DG + LHVAA FG    +  L    +   L+ + K  RTPLH+AV +    
Sbjct:   492 QADSNTQEVDGKTALHVAACFGHVGLVKLLA--SQGADLEKKQKNHRTPLHVAVERGKFR 549

Query:   248 CAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
                 LL++            ++LH A   G   + E LI+ GA+  ++ D+G +   +A 
Sbjct:   550 VVHYLLKNGASVNSLDQNHYSALHLAVVRGKYLICEKLIKYGANVELRTDKGWTPLHLAS 609

Query:   308 DKGHIEVLEVLQ--------RGEAVLT----AARRXXXXXXXXXXDKGASTNYCDQYGLT 355
              KGHIE++ +L+        RG    T    A R             GA  N  ++    
Sbjct:   610 FKGHIEIIHLLKDSCAKLNARGSMGWTPLHLATRYSEEPVVCELLRCGADPNITEKSEWA 669

Query:   356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
             PLH A  +G    V+ L+E  ADV  ++  G  PLHLAV  G +
Sbjct:   670 PLHFAVQRGSFLTVINLLECRADVNVKNKVGWTPLHLAVLKGNM 713

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NNF9 F1NNF9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
 Identities = 83/284 (29%), Positives = 125/284 (44%)

Query:   128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
             L  A  NGD   V+ +L  Q    A +++ E +      T L   S++    + R  LS 
Sbjct:   432 LHFAAQNGDDRIVRLLLDHQ----ARVNAQEHDGW----TPLHLASQNNFENVARVLLSR 483

Query:   188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG 247
             + D   +  DG + LHVAA FG    +  L    +   L+ + K  RTPLH+AV +    
Sbjct:   484 QADSNTQEVDGKTALHVAACFGHVGLVKLLA--SQGADLEKKQKNHRTPLHVAVERGKFR 541

Query:   248 CAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
                 LL++            ++LH A   G   + E LI+ GA+  ++ D+G +   +A 
Sbjct:   542 VVHYLLKNGASVNSLDQNHYSALHLAVVRGKYLICEKLIKYGANVELRTDKGWTPLHLAS 601

Query:   308 DKGHIEVLEVLQ--------RGEAVLT----AARRXXXXXXXXXXDKGASTNYCDQYGLT 355
              KGHIE++ +L+        RG    T    A R             GA  N  ++    
Sbjct:   602 FKGHIEIIHLLKDSCAKLNARGSMGWTPLHLATRYSEEPVVCELLRCGADPNITEKSEWA 661

Query:   356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
             PLH A  +G    V+ L+E  ADV  ++  G  PLHLAV  G +
Sbjct:   662 PLHFAVQRGSFLTVINLLECRADVNVKNKVGWTPLHLAVLKGNM 705

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

MGI|MGI:3045243 Ankrd44 "ankyrin repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 8.9e-19, P = 8.9e-19
 Identities = 83/280 (29%), Positives = 132/280 (47%)

Query:   128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
             L  A+ +GD   ++ ++ + + + A L S +   L+ VA  L     +++ LL+ +G   
Sbjct:    12 LVQAIFSGDPEEIRMLIHKTEDVNA-LDSEKRTPLH-VAAFLG--DAEIIELLILSGA-- 65

Query:   188 EIDERVKTKDG-W-SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS 245
                 RV  KD  W + LH A A  R+EE   ++ +K    ++ RDK  +TPLH+A    +
Sbjct:    66 ----RVNAKDNMWLTPLHRAVA-SRSEEAVQVL-IKHSADVNARDKNWQTPLHVAAANKA 119

Query:   246 IGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305
             + CA+V++              T+LH+AA NG   MV +L+  GA+    D + R     
Sbjct:   120 VKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKKDRRALHW 179

Query:   306 ARDKGHIEVLEVL-----------QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYG 353
             A   GH++V+ +L           ++G   L  AA            + G   +  + YG
Sbjct:   180 AAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQISVVKHLLNLGVEIDEINVYG 239

Query:   354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
              T LHIA   G   VV  LI++GA+V   +N G  PLH A
Sbjct:   240 NTALHIACYNGQDAVVNELIDYGANVNQPNNSGFTPLHFA 279

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060621-1 ank3a "ankyrin 3a" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 87/301 (28%), Positives = 137/301 (45%)

Query:   102 NSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAES 161
             N + + L  GS  + K K     P  L     +G    V+ +L R   IL+   +    S
Sbjct:   245 NMVKLLLDRGSKIEAKTKDGLT-P--LHCGARSGHEQVVEMLLDRGAPILS--KTKNGLS 299

Query:   162 LYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK 221
                +AT+   +  + V LLL+   +  +D+   T D  + LHVAA  G  +    +V  K
Sbjct:   300 PLHMATQ--GDHLNCVQLLLQH--NAPVDD--VTNDYLTALHVAAHCGHYKVAKVIVDKK 353

Query:   222 EYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRM 281
                + + +   G TPLH+A  K  +   ++LL+             T +H AA  G   +
Sbjct:   354 A--NPNAKALNGFTPLHIACKKNRVKVMELLLKHGASLQAVTESGLTPIHVAAFMGHENI 411

Query:   282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE-VLQRGEAVL-TAARRXXXXXXXXX 339
             V+ L   GA P   + RG +   +A   G I+V+  +LQ G  VL  A+R          
Sbjct:   412 VKQLTHHGASPNTTNVRGETALHMAARAGQIDVVRYLLQNGAKVLHIASRLGKLEIVQQL 471

Query:   340 XDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
               KGA  N     G TPLH++A +GH+ +  LL+E G+ +     +G  PLH+A + G++
Sbjct:   472 LQKGALPNAATTSGYTPLHLSAREGHQEIAALLLEQGSSLSAATKKGFTPLHVAAKYGQL 531

Query:   400 E 400
             E
Sbjct:   532 E 532

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:2145661 Ankrd28 "ankyrin repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 83/283 (29%), Positives = 131/283 (46%)

Query:   125 PFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAG 184
             P L++ A+ NGD + V++++ +++ +       E  +    A  L     +++ LL+ +G
Sbjct:    10 PSLVQ-AIFNGDPDEVRALIFKKEDV--NFQDNEKRTPLHAAAYLG--DAEIIELLILSG 64

Query:   185 LSIEIDERVKTKDG-W-SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN 242
                    RV  KD  W + LH A A    E +  L  +K    ++ RDK  +TPLH+A  
Sbjct:    65 A------RVNAKDSKWLTPLHRAVASCSEEAVQIL--LKHSADVNARDKNWQTPLHIAAA 116

Query:   243 KTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSC 302
               ++ CA+ L+              T+LH+AA +G   MV++L+  GA+    D + R  
Sbjct:   117 NKAVKCAESLVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRA 176

Query:   303 FDVARDKGHIEVLEVLQRGEAVLT------------AARRXXXXXXXXXXDKGASTNYCD 350
                A   GHIEV+++L    A +T            AA            D G   N  +
Sbjct:   177 IHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPN 236

Query:   351 QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
              YG TPLH+A   G   VV  LI+ GA+V  ++ +G  PLH A
Sbjct:   237 AYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFA 279

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 78/251 (31%), Positives = 115/251 (45%)

Query:   162 LYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW-SELHVAAAFGRTEEISSLVRM 220
             L+R A   A+ +E  V LLLR G  +   ++      W + LH+AAA   T  + +L  +
Sbjct:    78 LHRAA---ASRNERAVGLLLRKGADVTARDKY-----WQTPLHIAAANRATRCVETL--L 127

Query:   221 KEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRR 280
                 SL+  D+ GR PLH A         K+LL                +H AA  G   
Sbjct:   128 PHVSSLNMADRTGRAPLHHAAQSGYQEMVKLLLNKGANLSASDKKDRQPIHWAAYLGHLE 187

Query:   281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR-----------GEAVL-TAA 328
             +V++L+  G+D + KD RG +    A   GH++V++ L R           G   L  A 
Sbjct:   188 VVKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFGNTALHVAC 247

Query:   329 RRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVL-LLIEFGADVECQDNEGH 387
                         ++GA+ N  +  G TPLH+AA+  +  + L LL+  GADV  Q  EG 
Sbjct:   248 YTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADVNMQSKEGK 307

Query:   388 APLHLAVEGGR 398
             +PLH+A   GR
Sbjct:   308 SPLHMAAIHGR 318

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O15084 ANKRD28 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 83/283 (29%), Positives = 130/283 (45%)

Query:   125 PFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAG 184
             P L++ A+ NGD + V++++ +++ +       E  +    A  L     +++ LL+ +G
Sbjct:    10 PSLVQ-AIFNGDPDEVRALIFKKEDV--NFQDNEKRTPLHAAAYLG--DAEIIELLILSG 64

Query:   185 LSIEIDERVKTKDG-W-SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN 242
                    RV  KD  W + LH A A    E +  L  +K    ++ RDK  +TPLH+A  
Sbjct:    65 A------RVNAKDSKWLTPLHRAVASCSEEAVQVL--LKHSADVNARDKNWQTPLHIAAA 116

Query:   243 KTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSC 302
               ++ CA+ L+              T+LH+AA +G   MV++L+  GA+    D + R  
Sbjct:   117 NKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRA 176

Query:   303 FDVARDKGHIEVLEVLQRGEAVLT------------AARRXXXXXXXXXXDKGASTNYCD 350
                A   GHIEV+++L    A +T            AA            D G   N  +
Sbjct:   177 IHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPN 236

Query:   351 QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
              YG TPLH+A   G   VV  LI+ GA V  ++ +G  PLH A
Sbjct:   237 AYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFA 279

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2RTI6 ANKK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 84/287 (29%), Positives = 124/287 (43%)

Query:   128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
             L  A  NGD    + +L       A + + E E    +      N E++  LL+    S 
Sbjct:   432 LHFAAQNGDDRTARLLLDHG----AHVDAQEHEGWTPLHLAAQNNFENVARLLV----SR 483

Query:   188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG 247
             + D  V+  +G + LHVAA FG    +  L    +   LD + +  RTPLHLAV +  + 
Sbjct:   484 QADPNVREAEGKTPLHVAAYFGHISLVKLLTG--QGAELDAQQRNLRTPLHLAVERGKVR 541

Query:   248 CAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
               + LL+S            + LH AAA G   + +ML+  GA   +   +G +   +A 
Sbjct:   542 AIQHLLKSGAAPDVLDQSGYSPLHLAAARGKYLICKMLLRYGASLELPTQQGWTPLHLAA 601

Query:   308 DKGHIEVLEVLQRGEAVL------------TAARRXXXXXXXXXXDKGASTNYCDQYGLT 355
              KGH+E++ +L    A L             AAR             GA  +  +Q G T
Sbjct:   602 YKGHLEIIHLLAESHADLGAPGGMKWTPLHLAARHGEEVVVLALLQCGADPSAAEQSGWT 661

Query:   356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPL 402
             PLH+A  +G    V+ L+E  ADV  ++  G  P HLA   G V  L
Sbjct:   662 PLHLAVQRGAFLSVINLLEHRADVHARNKVGWTPAHLAALKGDVSIL 708

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|Q8N8A2 ANKRD44 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 5.9e-18, P = 5.9e-18
 Identities = 82/280 (29%), Positives = 131/280 (46%)

Query:   128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
             L  A+ +GD   ++ ++ + + +   L S +   L+ VA  L     +++ LL+ +G   
Sbjct:    12 LVQAIFSGDPEEIRMLIHKTEDVNT-LDSEKRTPLH-VAAFLG--DAEIIELLILSGA-- 65

Query:   188 EIDERVKTKDG-W-SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS 245
                 RV  KD  W + LH A A  R+EE   ++ +K    ++ RDK  +TPLH+A    +
Sbjct:    66 ----RVNAKDNMWLTPLHRAVA-SRSEEAVQVL-IKHSADVNARDKNWQTPLHVAAANKA 119

Query:   246 IGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305
             + CA+V++              T+LH+AA NG   MV +L+  GA+    D + R     
Sbjct:   120 VKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHW 179

Query:   306 ARDKGHIEVLEVL-----------QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYG 353
             A   GH++V+ +L           ++G   L  AA            + G   +  + YG
Sbjct:   180 AAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQINVVKHLLNLGVEIDEINVYG 239

Query:   354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
              T LHIA   G   VV  LI++GA+V   +N G  PLH A
Sbjct:   240 NTALHIACYNGQDAVVNELIDYGANVNQPNNNGFTPLHFA 279

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-071015-4 ankk1 "ankyrin repeat and kinase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 96/364 (26%), Positives = 149/364 (40%)

Query:    60 PLAQTT-LQIILKPQSQIPPTFPRSPSDRFLI---KATVFGSADS-VNSLCVTLPDGSTQ 114
             P ++T  L  +L    +IP TF R    + L    K T   S DS + SL V     S +
Sbjct:   274 PFSKTVRLTEVLSEVLKIPDTFSRREIRKRLPEQPKKTADSSDDSSIQSLLVRKDFNSFK 333

Query:   115 DV--KFKIAFV---GPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATEL 169
              V  K  ++ +      LL HAV+ GD  +V+ +L     + A ++    +    +   +
Sbjct:   334 KVVRKEHVSMLFQDNNSLLHHAVAGGDRESVQMVLN----LGASVNCQSVKGYTPLIVAV 389

Query:   170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
                  ++ SLL   G  + + +     D W+ LH A   G       L+  K     D +
Sbjct:   390 LHKFYEICSLLTDCGADVNLSDG----DQWTALHFAVQAGDDRATRFLLDNKA--RADAK 443

Query:   230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXX-XTSLHNAAANGDRRMVEMLIEM 288
             +K+G TPLHLA         ++LL               T+LH A+  G   +V++L+  
Sbjct:   444 EKDGWTPLHLAAQNGHENIVRILLRRLDSVDVQEHQSCRTALHVASIYGHINIVKLLLNK 503

Query:   289 GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLT------------AARRXXXXXX 336
             GAD   +D+   +   +A ++GH  V+ +L    A +             AA        
Sbjct:   504 GADIDKQDNNQSTALHLAAEEGHFRVVRLLVNSGADVNKVDEQSYSSLHFAALNGYTGIC 563

Query:   337 XXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
                  KG   N       T +H+AA+KGH  ++L L E    V  Q   G  PLHLA   
Sbjct:   564 RLLLSKGIDPNSRTNKNWTAMHLAALKGHPEIILTLEEHQGSVNIQGKNGWTPLHLACHH 623

Query:   397 GRVE 400
             G+ E
Sbjct:   624 GQEE 627

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0022009901	hypothetical protein (328 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0014034801	hypothetical protein (432 aa)			•						0.503
	fgenesh4_pg.C_LG_V000091	hypothetical protein (541 aa)			•						0.501
	gw1.III.470.1	hypothetical protein (174 aa)			•						0.499
	eugene3.00181080	hypothetical protein (150 aa)			•						0.445
	eugene3.00150907	hypothetical protein (218 aa)			•						0.425
	eugene3.01200029	hypothetical protein (394 aa)			•						0.413
	eugene3.01200012	annotation not avaliable (394 aa)			•						0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	418
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-23
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-18
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-15
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-15
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	9e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-14
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-14
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-14
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-13
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-12
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-12
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	4e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-09
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-07
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	9e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	4e-06
smart00248	30	smart00248, ANK, ankyrin repeats	5e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	6e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	7e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.002
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.002
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.003
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (313), Expect = 1e-34
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 21/147 (14%)

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           + RD++GRTPLHLA +   +   K+LLE+GAD  AK  DG+T LH AA NG   +V++L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           E GAD   +D  G +   +A   G+++V+++                     LL  GA  
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKL---------------------LLKHGADV 99

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLI 373
           N  D+ G TPLH+AA  GH  VV LL+
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  120 bits (303), Expect = 3e-33
 Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 21/137 (15%)

Query: 264 KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA 323
           +DG+T LH AA+NG   +V++L+E GAD   KD+ GR+   +A   GH+E++++L     
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL----- 59

Query: 324 VLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
                           L+KGA  N  D+ G TPLH+AA  G+  VV LL++ GADV  +D
Sbjct: 60  ----------------LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 384 NEGHAPLHLAVEGGRVE 400
            +G  PLHLA + G +E
Sbjct: 104 KDGRTPLHLAAKNGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  114 bits (286), Expect = 1e-30
 Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 2/126 (1%)

Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
            + +DG + LH+AA+ G  E +  L+       ++ +D +GRTPLHLA     +   K+L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
           LE GAD  A+ KDG T LH AA NG+  +V++L++ GAD   +D  GR+   +A   GH+
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 313 EVLEVL 318
           EV+++L
Sbjct: 120 EVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 93.6 bits (233), Expect = 4e-23
 Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 8/120 (6%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           LAA     ++V LLL  G  +      K  DG + LH+AA  G  E +  L+  ++   +
Sbjct: 13  LAASNGHLEVVKLLLENGADVNA----KDNDGRTPLHLAAKNGHLEIVKLLL--EKGADV 66

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           + RDK+G TPLHLA    ++   K+LL+ GAD  A+ KDG+T LH AA NG   +V++L+
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 90.9 bits (226), Expect = 7e-20
 Identities = 73/253 (28%), Positives = 108/253 (42%), Gaps = 45/253 (17%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEE-ISSLVRMKEYESLDCRD 230
             +D+V LLL AG     D     + G++ LH+      T + I  L++      ++ +D
Sbjct: 61  KVKDIVRLLLEAG----ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA--DVNAKD 114

Query: 231 KEGRTPLH--LAVNKTSIGCAKVLLESGADKEAKGKDGKTSLH----NAAANGDRRMVEM 284
           K GRTPLH  L+    +    ++LL  GAD  A    G T L     +  AN +  ++ +
Sbjct: 115 KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVE--LLRL 172

Query: 285 LIEMGADPTIKDDRGRS-----------------------CFDVARDKGHIEVLEVLQRG 321
           LI+ GAD    DDR RS                       C   A D      L  +   
Sbjct: 173 LIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM--- 229

Query: 322 EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
            A  ++ +R  +     LL  G S N  ++YG TPLH AA+  +      LI  GAD+  
Sbjct: 230 -ATGSSCKRSLVL---PLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINA 285

Query: 382 QDNEGHAPLHLAV 394
             ++G+ PL L V
Sbjct: 286 VSSDGNTPLSLMV 298

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 80.8 bits (200), Expect = 7e-19
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 23/114 (20%)

Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           LH AA NG+  +V++L+E GAD  + D                          A+  AAR
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD-----------------------TDTALHLAAR 37

Query: 330 RGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
            G LE ++ LL+ GA  N  D+ G T LH+AA  G+  +V LL+E GAD+  +D
Sbjct: 38  NGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 5e-18
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEA 261
           LH+AA  G  E +  L+        D    +  T LHLA    ++   K+LLE GAD  A
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA----DVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 262 KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD 296
           K KDG T+LH AA NG+  +V++L+E GAD  +KD
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 7e-18
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 327 AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386
           AA+ G LE ++ LL+KGA  N  D    T LH+AA  G+  +V LL+E GADV  +D +G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 387 HAPLHLAVEGGRVE 400
           +  LHLA   G +E
Sbjct: 62  NTALHLAARNGNLE 75

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 234 RTPLHLAVN-KTSIGC----AKVLLESGADKEAKGKDGKTSLHNAAAN--GDRRMVEMLI 286
            TPLH   N K ++       K+LLE GA+  A   +G T L  A +       +VE L+
Sbjct: 69  STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL 128

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHI--EVLEVL-QRGEAVLTAARRGELEGLESLLDKG 343
           + GA+  IK+  G +   +  +   I  ++L++L  +G  +    R      +  LL  G
Sbjct: 129 DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR------VNYLLSYG 182

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
              N  D YG TPLH A    +   V  L++ GA+    +  G  PLH+A+
Sbjct: 183 VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI 233

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 21/230 (9%)

Query: 141 KSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS 200
             +L    ++L+   S  ++    +  ELA      +S LL   L ++     +  DG  
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLK-LIVDRHLAARDLDGRL 75

Query: 201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNK-----TSIGCAKVLLES 255
            LH AA+ G  + +  L+       ++ +D +G TPLHLA         +I  AK+LLE+
Sbjct: 76  PLHSAASKGDDKIVKLLLA--SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 256 GADKE---AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
           GAD +    + +DG T LH AA NGD  +VE+L+E GADP  ++  G +  D A   G I
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRI 193

Query: 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY--GLTPLHIA 360
           E++++L      L+  +          L+  A+ N   +    LT L IA
Sbjct: 194 ELVKLLLDKGLHLSLLK--------FNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 52/155 (33%), Positives = 71/155 (45%), Gaps = 22/155 (14%)

Query: 250 KVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
           K +L+ G D   K  + KT LH A   GD   ++ML E GAD  I+DD G  C+ +    
Sbjct: 108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG--CYPI---- 161

Query: 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
            HI              A +    + ++ LL+KGA  N  D  G +PLH AA  G    +
Sbjct: 162 -HI--------------AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACI 206

Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGR-VEPLL 403
            LLI+ G  +  +   G  PLH A+   R    LL
Sbjct: 207 KLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELL 241

Length = 434

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 30/54 (55%), Positives = 37/54 (68%)

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           N  D+ G TPLH+AA  GH  VV LL+E GADV  +DN+G  PLHLA + G +E
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLE 54

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 74.5 bits (182), Expect = 3e-15
 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 32/217 (14%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
             + ++  LL        +   K  + + EL +  A   +E +     +     L  RD 
Sbjct: 15  FLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLK---LIVDRHLAARDL 71

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG-----DRRMVEMLI 286
           +GR PLH A +K      K+LL SGAD  AK  DG T LH AA NG     +  + ++L+
Sbjct: 72  DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131

Query: 287 EMGA---DPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           E GA      ++D+ G +                      +  AA  G+ + +E LL+ G
Sbjct: 132 EAGADLDVNNLRDEDGNT---------------------PLHWAALNGDADIVELLLEAG 170

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           A  N  + YG+T L  AA  G   +V LL++ G  + 
Sbjct: 171 ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 67/259 (25%), Positives = 103/259 (39%), Gaps = 40/259 (15%)

Query: 159 AESLYRVATELAANSEDMVSLLLRAGLSIEI-DERVKTKDGWSELHVAAAFG---RTEEI 214
             +LY      +  + + V  LL AG  +    E  KT      LH+   +      + +
Sbjct: 12  EAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTP-----LHLYLHYSSEKVKDIV 66

Query: 215 SSLVRMKEYESLDCRDKEGRTPLHLAV-NKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273
             L+       ++  ++ G TPLHL + N T++   K+L+++GAD  AK K G+T LH  
Sbjct: 67  RLLLEAGAD--VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY 124

Query: 274 AANG--DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRG 331
            +    + +++ +L+  GAD    D  G +   V                   L  +R  
Sbjct: 125 LSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV-------------------LLKSRNA 165

Query: 332 ELEGLESLLDKGASTNYCDQYGLTPLHIAA--IKGHKHVVLLLIEFGADVECQDNEGHAP 389
            +E L  L+D GA     D    + LH      K    +V  LI  G D    D  G+ P
Sbjct: 166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Query: 390 LHLAVEGGR-----VEPLL 403
           LH    G       V PLL
Sbjct: 226 LHSMATGSSCKRSLVLPLL 244

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 75.9 bits (186), Expect = 9e-15
 Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 249 AKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARD 308
           A++LLE GAD  AK     T +H AA  G+ +MV +L+  GAD  I      S  + A D
Sbjct: 161 AEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVD 220

Query: 309 KGHIEVLEVL--------QRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA 360
             +I+ ++ +        +   ++L A R  +LE    L D G S N  D    TPLH A
Sbjct: 221 SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHA 280

Query: 361 A-IKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
           +       +V  L+E GADV  ++ +G  PL+L  + G
Sbjct: 281 SQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNG 318

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 237 LHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD 296
           LHLA    ++   K+LLE GAD      D  T+LH AA NG+  +V++L+E GAD   KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 297 DRGRSCFDVARDKGHIEVLEVL 318
             G +   +A   G++E++++L
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 22/220 (10%)

Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAA----FGRTEEISSLVRMKEYESL 226
           A + D+V +LL  G     D    TK+  + LH  +         +EI  L+ ++   ++
Sbjct: 45  ARNIDVVKILLDNG----ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL-LEYGANV 99

Query: 227 DCRDKEGRTPLHLAVNKT--SIGCAKVLLESGADKEAKGKDGKTSLHNAAANG--DRRMV 282
           +  D  G TPL  A++K   S    + LL++GA+   K  DG+  LH    +   D +++
Sbjct: 100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL 159

Query: 283 EMLIEMGADPTIKDDRGRSCFDVARDKG-HIEVLEVLQRGE-AVLTAARRGELEGLESLL 340
           ++LI+ G D   K+       +     G  I + +V   G   +  A      E ++ LL
Sbjct: 160 KLLIDKGVDINAKNR-----VNYLLSYGVPINIKDV--YGFTPLHYAVYNNNPEFVKYLL 212

Query: 341 DKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           D GA+ N  ++YG TPLHIA +  +K +  LL+  G  ++
Sbjct: 213 DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 23/187 (12%)

Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
           VK  D  SELH A   G  + +  L+ + ++   D   K+G TPLHLA     +   K+L
Sbjct: 63  VKYPDIESELHDAVEEGDVKAVEELLDLGKFAD-DVFYKDGMTPLHLATILKKLDIMKLL 121

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
           +  GAD +    D  + LH A   GD + +E+LI+  A   I+D  G +   +A  KG I
Sbjct: 122 IARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI 181

Query: 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHK-HVVLL 371
            + ++                     LLD GA+ +Y  + G       AI+ +K  +V L
Sbjct: 182 AICKM---------------------LLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220

Query: 372 LIEFGAD 378
            I+ GAD
Sbjct: 221 FIKRGAD 227

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 29/184 (15%)

Query: 200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADK 259
           S L   A+ G    +  L++ K     D  D +GRTPLH+A +K    C  VLL+   + 
Sbjct: 527 SNLLTVASTGNAALLEELLKAKL--DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV 584

Query: 260 EAKGKDGKTSLHNAAANGDRRMVEMLIEMGA--DPTIKDDRGRSCFDVARDKGHIEVLEV 317
             +  +G T+L NA +    ++  +L    +  DP                         
Sbjct: 585 HIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAA---------------------- 622

Query: 318 LQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
              G+ + TAA+R +L  ++ LL +G + +  D  G T L +A  + H  +V LLI  GA
Sbjct: 623 ---GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679

Query: 378 DVEC 381
           DV+ 
Sbjct: 680 DVDK 683

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 73.8 bits (181), Expect = 3e-14
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 32/224 (14%)

Query: 174 EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES-LDCRDKE 232
           +DM+  +L  G+ + I +  + K   + LH A   G  E I  L    EY + ++  D  
Sbjct: 104 KDMIKTILDCGIDVNIKDA-ELK---TFLHYAIKKGDLESIKMLF---EYGADVNIEDDN 156

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
           G  P+H+A+        K+LLE GA    K  +G++ LHNAA  GD   +++LI+ G   
Sbjct: 157 GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352
             K   G +    A          ++    A+              LL   AS N  D  
Sbjct: 217 MNKCKNGFTPLHNA----------IIHNRSAI-------------ELLINNASINDQDID 253

Query: 353 GLTPLHIA-AIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
           G TPLH A        ++ +L+   AD+  +DN+G  P+  A +
Sbjct: 254 GSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 34/288 (11%)

Query: 125 PFL-LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRA 183
           PF+ L  AV   + + VKS+L R      G +  + +        +     + +      
Sbjct: 37  PFIPLHQAVEARNLDVVKSLLTR------GHNVNQPDHRDLTPLHIICKEPNKL------ 84

Query: 184 GLSIEIDERVKTKDGWSELHVAAAF-GRTEEISSLVRMKEYESL-DCRDKEGRTPLHLAV 241
           G+   I    K    ++ + +  AF  R  EI  ++    Y+++               +
Sbjct: 85  GMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDI 144

Query: 242 NKTSIGCAKVLLESGADKEAKGKD-GKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGR 300
            +  I   K+LL  GAD   K +  G T+LH A  N D+R+ E+L+  GA+  I D    
Sbjct: 145 IEAEI--TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN 202

Query: 301 SCFDVARDKGHIEVLEVLQRGEAVLTA-------------ARRGELEGLESLLDKGASTN 347
           S    A    +  ++ +L    A   A                 + + L+ LL+ G   N
Sbjct: 203 SPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN 262

Query: 348 YCDQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
                 GLT LH + IK  +  + LL+E+GAD+   ++    PL  AV
Sbjct: 263 AKSYILGLTALHSS-IKSER-KLKLLLEYGADINSLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 35/73 (47%), Positives = 39/73 (53%)

Query: 328 ARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
           A  G+  G   LL  GA  N  D  G TPLHIA   GH  VV +L+EFGAD    D +G 
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 388 APLHLAVEGGRVE 400
            PL LA E G  E
Sbjct: 150 TPLELAEENGFRE 162

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 238 HLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD 297
            LA +  ++G A++LL  GAD   +  DG+T LH A ANG  ++V +L+E GADPT+ D 
Sbjct: 88  QLAASGDAVG-ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Query: 298 RGRSCFDVARDKGHIEVLEVLQR 320
            G++  ++A + G  EV+++L R
Sbjct: 147 DGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 4   LLAVSEQEVLI-NFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLA 62
           LL +   ++L      + +  + + L +      VAFKV+T++P ++ V P  G+++P  
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPS-DKRVAFKVKTTNPKRYRVRPNYGILKPGE 59

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADS 100
             T+ I  +P  + P        D+F+I+ T       
Sbjct: 60  SVTITITRQPFDKEP---GDPKKDKFVIQYTEAPDDAK 94

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 23/211 (10%)

Query: 99  DSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAE 158
           D + ++     D + +D + K        L +A+  GD  ++K + +      A ++  +
Sbjct: 105 DMIKTILDCGIDVNIKDAELKT------FLHYAIKKGDLESIKMLFEYG----ADVNIED 154

Query: 159 AESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLV 218
               Y +   +  N  D++ LLL  G        VK  +G S LH AA +G    I  L+
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYAN----VKDNNGESPLHNAAEYGDYACIKLLI 210

Query: 219 RMKEYESLDCRDKEGRTPLHLAV--NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN 276
               +    C  K G TPLH A+  N+++I     LL + A    +  DG T LH+A   
Sbjct: 211 DHGNHIMNKC--KNGFTPLHNAIIHNRSAIE----LLINNASINDQDIDGSTPLHHAINP 264

Query: 277 G-DRRMVEMLIEMGADPTIKDDRGRSCFDVA 306
             D  ++++L+   AD +IKD++G +  D A
Sbjct: 265 PCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 65.5 bits (159), Expect = 2e-11
 Identities = 83/330 (25%), Positives = 131/330 (39%), Gaps = 75/330 (22%)

Query: 117 KFKIAFVGPFLLRHAVSNGDFNA---------VKSILKR--------QKMILAGLSSAEA 159
           K K+      +L+ A+S  D +          +K I +R         +M+L G +   A
Sbjct: 114 KHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNA 173

Query: 160 ESLY-RVATELAAN--SEDMVSLLLRAGLSIEI-------------------------DE 191
           + +Y       AA   +  MV+LLL  G  + I                         D 
Sbjct: 174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN 233

Query: 192 RVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG-CAK 250
           R       ++L +  A    +  +SL+      S++  D    TPLH A    S+     
Sbjct: 234 RSNINK--NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVP 291

Query: 251 VLLESGADKEAKGKDGKTSLHNAAANG-DRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
            LLE GAD  AK   G+T L+  A NG D   +  LI +GAD              A D+
Sbjct: 292 KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN------------AADR 339

Query: 310 GHIEVLE---VLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHK 366
            +I  L     L R + ++            +LL+ GA+ N  D    TP+H AA++ + 
Sbjct: 340 LYITPLHQASTLDRNKDIVI-----------TLLELGANVNARDYCDKTPIHYAAVRNNV 388

Query: 367 HVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
            ++  L+++GAD+E    +    LH A+ G
Sbjct: 389 VIINTLLDYGADIEALSQKIGTALHFALCG 418

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 25/223 (11%)

Query: 180 LLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL 239
           + R  L I I+   +  DG S + +A  F  +E I  L++      +   D    + LH 
Sbjct: 17  IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI--ESELHD 74

Query: 240 AVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR 298
           AV +  +   + LL+ G    +   KDG T LH A       ++++LI  GADP I +  
Sbjct: 75  AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD 134

Query: 299 GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH 358
             S         H+ V+               G+++G+E L+D  A  +  D  G TPL 
Sbjct: 135 KFSPL-------HLAVMM--------------GDIKGIELLIDHKACLDIEDCCGCTPLI 173

Query: 359 IAAIKGHKHVVLLLIEFGADVECQDNEGH-APLHLAVEGGRVE 400
           IA  KG   +  +L++ GA+++     G  A L  A+E  +++
Sbjct: 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID 216

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  AV  GD  AV+ +L   K             L+ +AT L     D++ LL+  G   
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH-LATIL--KKLDIMKLLIARG--- 125

Query: 188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG 247
             D  +   D +S LH+A   G  + I  L+  K    LD  D  G TPL +A+ K  I 
Sbjct: 126 -ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA--CLDIEDCCGCTPLIIAMAKGDIA 182

Query: 248 CAKVLLESGADKEAKGKDGK-TSLHNAAANGDRRMVEMLIEMGADPTI 294
             K+LL+SGA+ +  GK+G   +L  A  N    +V + I+ GAD  I
Sbjct: 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 60.5 bits (146), Expect = 7e-10
 Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 41/323 (12%)

Query: 92  ATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSIL-KRQKMI 150
           A   G+A  VN L   L  G+  ++   IA     +L  AV + + + +K+I+  R  + 
Sbjct: 185 AAERGNAKMVNLL---LSYGADVNI---IALDDLSVLECAVDSKNIDTIKAIIDNRSNIN 238

Query: 151 LAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGR 210
              LS  +A     + T L         LL  AG S+   +  K     + LH A+   +
Sbjct: 239 KNDLSLLKAIRNEDLETSL---------LLYDAGFSVNSIDDCKN----TPLHHAS---Q 282

Query: 211 TEEISSLVR--MKEYESLDCRDKEGRTPLHL-AVNKTSIGCAKVLLESGADKEAKGKDGK 267
              +S LV   ++    ++ ++ +G TPL+L A N       + L+  GAD  A  +   
Sbjct: 283 APSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYI 342

Query: 268 TSLHNAAA-NGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL-------- 318
           T LH A+  + ++ +V  L+E+GA+   +D   ++    A  + ++ ++  L        
Sbjct: 343 TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE 402

Query: 319 ---QRGEAVLTAARRGE--LEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHK-HVVLLL 372
              Q+    L  A  G      +++L+D+GA+ N  ++   TPLH A  K  K  V+ +L
Sbjct: 403 ALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEML 462

Query: 373 IEFGADVECQDNEGHAPLHLAVE 395
           ++ GADV   + +   PL +A+E
Sbjct: 463 LDNGADVNAINIQNQYPLLIALE 485

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 18/176 (10%)

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           E  TPL  A+        ++ ++ GAD           L  A   G   ++++LI+ G D
Sbjct: 34  ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD 93

Query: 292 ------PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLT----AARRGELEGLESLLD 341
                 P I+ D  ++  D          ++V  +   + T    A ++G+LE ++ L +
Sbjct: 94  TSILPIPCIEKDMIKTILDCG--------IDVNIKDAELKTFLHYAIKKGDLESIKMLFE 145

Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
            GA  N  D  G  P+HIA       ++ LL+E GA    +DN G +PLH A E G
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 29/59 (49%), Positives = 37/59 (62%)

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           +CRD +GRTPLH+A     +   +VLLE GAD     KDGKT L  A  NG R +V++L
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLF 404
           G T LH AAI G   +V  L+E G D+   D +G+  LH+A E G +E L  
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 339 LLDKG-ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
           LL+ G    N  D  G TPLH+AA  G   +V  L++ G D+  +D++G   L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 18/122 (14%)

Query: 281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLL 340
           +V++L++ GAD         S         H             LT  +    E ++ LL
Sbjct: 50  VVKILLDNGADINSSTK-NNSTP------LHYLSNIK-----YNLTDVK----EIVKLLL 93

Query: 341 DKGASTNYCDQYGLTPLHIAAIK--GHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
           + GA+ N  D  G+TPL  A  K      +V  L++ GA+V  ++++G   LHL +E  +
Sbjct: 94  EYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNK 153

Query: 399 VE 400
           ++
Sbjct: 154 ID 155

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 22/141 (15%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTE-EISSLV-----------R 219
           NS  +V  LL  G     +  +K  DG + LH+     + + +I  L+           R
Sbjct: 119 NSYSIVEYLLDNG----ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Query: 220 MK---EYES-LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA 275
           +     Y   ++ +D  G TPLH AV   +    K LL+ GA+     K G T LH A  
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL 234

Query: 276 NGDRRMVEMLIEMGADPTIKD 296
           N ++ + ++L+  G  P+IK 
Sbjct: 235 NNNKEIFKLLLNNG--PSIKT 253

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 50.6 bits (122), Expect = 7e-09
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
            G TPLH+AA  GH  VV LL+E GADV  +D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 327 AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI 373
           AA  G LE ++ LL+KG   N  D+ G T LHIAA  G+  V+ LL+
Sbjct: 8   AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           GRT LH A     +   K LLE G D     +DG T+LH AA NG+  ++++L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           T+LH AA +G   +V+ L+E G D    D+ G +   +A + G++EVL++L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 28/74 (37%), Positives = 32/74 (43%)

Query: 325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
           L       L  L   L         D  G  PLH AA KG   +V LL+  GADV  +D 
Sbjct: 45  LALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA 104

Query: 385 EGHAPLHLAVEGGR 398
           +G  PLHLA   G 
Sbjct: 105 DGDTPLHLAALNGN 118

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query: 324 VLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
           +LT A  G    LE LL      +  D  G TPLHIAA KG++  VL+L++   +V  +D
Sbjct: 529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD 588

Query: 384 NEGHAPLHLAVEGG 397
             G+  L  A+   
Sbjct: 589 ANGNTALWNAISAK 602

Length = 823

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 29/191 (15%)

Query: 222 EYESL--DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR 279
           E + L  +C D+ GR+ L +A  +        LL +      +G  G T LH A +    
Sbjct: 39  EPKKLNINCPDRLGRSALFVAAIENENLELTELLLN---LSCRGAVGDTLLH-AISLEYV 94

Query: 280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE-AVLTAARRGELEGLES 338
             VE ++       +   R     ++A D    +       G  A+  AA R   E ++ 
Sbjct: 95  DAVEAILL----HLLAAFRKSGPLELAND----QYTSEFTPGITALHLAAHRQNYEIVKL 146

Query: 339 LLDKGASTNY---CDQ-----------YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
           LL++GAS       D            +G +PL+ AA  G   +V LL E  AD+   D+
Sbjct: 147 LLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADS 206

Query: 385 EGHAPLHLAVE 395
            G+  LHL V 
Sbjct: 207 LGNTLLHLLVM 217

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 252 LLESG-ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA 306
           LLE G  D  A   +G T LH AA  G   +V+ L++ G D  ++D  G +  D+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 357 LHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           LH+AA  G+  +V LL+E GADV   D      LHLA   G +E
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLE 42

Length = 91

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 16  FTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQ 75
            T  SK   +V+  S     PV FKV+T++P  + V P  GL++P++   +++IL+  ++
Sbjct: 15  LTNKSKEMFSVQNNSP---EPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTE 71

Query: 76  IP-PTFPRSPSDRFLIKATVFGSADS 100
            P P F     D+FLI++  F    S
Sbjct: 72  EPAPDF--KCRDKFLIQSYRFDWRLS 95

Length = 242

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 26/164 (15%)

Query: 240 AVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRG 299
           A+    +  A+ LL+ G +   +  DG + +  A    D   +++L++ GA P +K    
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 300 RSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN---YCDQYGLTP 356
            S                      +  A   G+++ +E LLD G   +   Y D  G+TP
Sbjct: 69  ES---------------------ELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTP 105

Query: 357 LHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           LH+A I     ++ LLI  GAD +  + +  +PLHLAV  G ++
Sbjct: 106 LHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 28/190 (14%)

Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
           ++  LLL  G  I + +R K     + LH A    + + ++ L+       ++  DK   
Sbjct: 148 EITKLLLSYGADINMKDRHKGN---TALHYATE-NKDQRLTELLLSYGAN-VNIPDKTNN 202

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN-GDRRMVEMLIEMGADPT 293
           +PLH AV   +     +LLE+GA  +A+ K G T LH +     D  ++++L+E G D  
Sbjct: 203 SPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN 262

Query: 294 IKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353
            K               +I        G   L ++ + E   L+ LL+ GA  N  + Y 
Sbjct: 263 AKS--------------YI-------LGLTALHSSIKSE-RKLKLLLEYGADINSLNSYK 300

Query: 354 LTPLHIAAIK 363
           LTPL  A  +
Sbjct: 301 LTPLSSAVKQ 310

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD 297
           DG T LH AA NG   +V++L+E GAD   +D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
           G + LH AA  GR E +  L+       ++  D++G T LH+A    ++   K+LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGV--DINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 29/143 (20%)

Query: 226 LDCRDKEGRTPL-HLAVN----KTSIGCAKVLLESGADKEAKGKDGKTS----LHNAAAN 276
           ++  D E  TPL  +  N    K  +   K+L+E+GAD   K  DG+T     L N   N
Sbjct: 64  VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYIN 123

Query: 277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGL 336
            +  ++  +IE GAD T+ D  G +   V            LQ    +       ++E +
Sbjct: 124 -NLEILLFMIENGADTTLLDKDGFTMLQV-----------YLQSNHHI-------DIEII 164

Query: 337 ESLLDKGASTN-YCDQYGLTPLH 358
           + LL+KG   N + ++     LH
Sbjct: 165 KLLLEKGVDINTHNNKEKYDTLH 187

Length = 489

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
            G TPLH+AA  G+  VV LL++ GAD+  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 26/74 (35%), Positives = 42/74 (56%)

Query: 329 RRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA 388
           ++ EL   E LL+ GA  N  D Y +TP+H AA +G+  +V LL+ +GADV     +  +
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS 213

Query: 389 PLHLAVEGGRVEPL 402
            L  AV+   ++ +
Sbjct: 214 VLECAVDSKNIDTI 227

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 45/174 (25%)

Query: 180 LLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPL-- 237
           LL+A L  +I +      G + LH+AA+ G  + +  LV +K   ++  RD  G T L  
Sbjct: 544 LLKAKLDPDIGD----SKGRTPLHIAASKGYEDCV--LVLLKHACNVHIRDANGNTALWN 597

Query: 238 -----H------------------------LAVNKTSIGCAKVLLESGADKEAKGKDGKT 268
                H                         A  +  +   K LL+ G + +++   G T
Sbjct: 598 AISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGAT 657

Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
           +L  A A     MV +LI  GAD            +   D    E+ E+LQ+ E
Sbjct: 658 ALQVAMAEDHVDMVRLLIMNGADVD--------KANTDDDFSPTELRELLQKRE 703

Length = 823

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
            G TPLH+AA  G+  +V LL+E GAD+  
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 149 MILAGLSSAEAESLYRVATELAANS----EDMVSLLLRAGLSIEIDERVKTKDGWSELHV 204
           +I AG      +  +R        S      +V  L+RAG     D       G + LH 
Sbjct: 173 LIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAG----CDPAATDMLGNTPLHS 228

Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLA-VNKTSIGCAKVLLESGADKEAKG 263
            A     +    L  +    S++ R++ G+TPLH A V      C + L+  GAD  A  
Sbjct: 229 MATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRR-LIALGADINAVS 287

Query: 264 KDGKTSLHNAAANGDRRMVEMLIE 287
            DG T L     N + R V   + 
Sbjct: 288 SDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 224 ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273
             L+  D  G TPLHLA    ++   + LL+ G D   +  DG T+L  A
Sbjct: 7   IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK 264
           +G TPLHLA     +   K+LLE+GAD  A+ K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  A  NG+   VK +L++   +  G       +L+  A      + ++V LLL  G   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG---DTDTALHLAA---RNGNLEIVKLLLEHG--- 51

Query: 188 EIDERVKTKDGWSELHVAAAFGRTE 212
             D   K KDG + LH+AA  G  E
Sbjct: 52  -ADVNAKDKDGNTALHLAARNGNLE 75

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 51/226 (22%), Positives = 84/226 (37%), Gaps = 42/226 (18%)

Query: 220 MKEYESLDCRDKEGRT---------PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSL 270
           +K  E +D    E  +         PLH AV   ++   K LL  G +         T L
Sbjct: 17  LKYIEYID--HTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPL 74

Query: 271 HNAAANGDRR-MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           H      ++  M EM+  +      K     +     +D  +   +E+ +    +LT   
Sbjct: 75  HIICKEPNKLGMKEMIRSI-----NKCSVFYT-LVAIKDAFNNRNVEIFK---IILTNRY 125

Query: 330 RG------------------ELEGLESLLDKGASTNYCDQYGL-TPLHIAAIKGHKHVVL 370
           +                   E E  + LL  GA  N  D++   T LH A     + +  
Sbjct: 126 KNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTE 185

Query: 371 LLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSH 416
           LL+ +GA+V   D   ++PLH AV+    +P++ I L + G     
Sbjct: 186 LLLSYGANVNIPDKTNNSPLHHAVKHYN-KPIVHILL-ENGASTDA 229

Length = 477

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 31/144 (21%), Positives = 67/144 (46%), Gaps = 11/144 (7%)

Query: 173 SEDMVSLLLRAGLSIEIDERVKTKD-GWSELHVAAAFGR--TEEISSLVRMKEYESLDCR 229
           + +++  L+  G  +      KT+D   S LH   +F +    EI  ++ +    S+   
Sbjct: 65  NVEILKFLIENGADVNF----KTRDNNLSALHHYLSFNKNVEPEILKIL-IDSGSSITEE 119

Query: 230 DKEGRTPLHLAVNKTS--IGCAKVLLESGADKEAKGKDGKTSLHNAAA-NGDRRMVEMLI 286
           D++G+  LH+ +   +  I   K+L++SG     K  D    L++    + D+++ + L 
Sbjct: 120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLT 179

Query: 287 EMGADPTIKDDRGRSCFDVARDKG 310
            +G D    +  G +C+D+ + + 
Sbjct: 180 SLGIDINETNKSGYNCYDLIKFRN 203

Length = 209

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTI 294
           DG+T LH AA NG+  +V++L++ GAD   
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 232 EGRTPLH--LAVNKT-SIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM--VEMLI 286
              + LH  L+ NK       K+L++SG+    + +DGK  LH    N + R+  +++LI
Sbjct: 86  NNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI 145

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           + G     KD    +         +  +L                + +  + L   G   
Sbjct: 146 DSGVSFLNKDFDNNNIL-------YSYIL-------------FHSDKKIFDFLTSLGIDI 185

Query: 347 NYCDQYGLTPLHI 359
           N  ++ G     +
Sbjct: 186 NETNKSGYNCYDL 198

Length = 209

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 308 DKGHIEVLEVLQRGEAVL-TAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA 360
           + G I++      G   L  AA+ G LE ++ LL  G   N  D  GLT L +A
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 17/183 (9%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM--VEMLIE 287
           D +G  PLH+A    +     +LL  GAD  A  K  KT L+  +   D  +  + +L++
Sbjct: 69  DDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ 128

Query: 288 MGADPTIK-DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRG-------------EL 333
            GA      D+ G        D       +++  G       + G             + 
Sbjct: 129 YGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKA 188

Query: 334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHV-VLLLIEFGADVECQDNEGHAPLHL 392
             +  ++  G S +  D  G TPLHI   K  K+V ++ L+    DV  Q+  G +PL L
Sbjct: 189 STISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTL 248

Query: 393 AVE 395
            ++
Sbjct: 249 LIK 251

Length = 446

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTI 294
           DG T LH AA NG+  +V++L+E GAD   
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 336 LESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH 391
           +E LL +G S N  D  G  PLHIA+   +  +V +L+  GAD    D +   PL+
Sbjct: 55  VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLY 110

Length = 446

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEA 261
           +GRTPLHLA    ++   K+LL+ GAD  A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 23/162 (14%)

Query: 235 TPLHLAVNKTSIGCAKVL---LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           TPLH  +   ++ CA V+   +E G D + K  +G + +          M  ++     +
Sbjct: 214 TPLHTYLITGNV-CASVIKKIIELGGDMDMKCVNGMSPI----------MTYIINIDNIN 262

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
           P I +    S  D  + K    +L       + +T AR  ++  + S L  G   +Y D 
Sbjct: 263 PEITNIYIES-LDGNKVKNIPMILH------SYITLARNIDISVVYSFLQPGVKLHYKDS 315

Query: 352 YGLTPLHIAAIKGH--KHVVLLLIEFGADVECQDNEGHAPLH 391
            G T LH   ++ +    ++ LL E+G D+   DN G+  LH
Sbjct: 316 AGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH 357

Length = 764

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 17/187 (9%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
           D  G + L+ A+   ++     LL +GA K     + +  LH AA   D ++V++L+  G
Sbjct: 27  DVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSG 84

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLT-------------AARRGELEGL 336
            D +  DD+G +    A D G+++ +++  +    L              A    ++  +
Sbjct: 85  MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV 144

Query: 337 ESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP-LHLAVE 395
              L +  ST +     L+ +HI    GH  +++LL+++       ++    P + LA++
Sbjct: 145 SYFLSEIPST-FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 203

Query: 396 GGRVEPL 402
              +E L
Sbjct: 204 NKDLEML 210

Length = 284

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 264 KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKG-HIEVLEVLQRGE 322
           K G+T LH A     + +V +L+E G+D  I+ + G +C  +A ++  +IE+L++L   +
Sbjct: 450 KRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHK 509

Query: 323 AVLTAARRGELEGLESLLDKGASTNYCDQYGL 354
             L       L  + +++D   +   C +Y +
Sbjct: 510 PTLDCV-IDSLREISNIVDNAYAIKQCIKYAM 540

Length = 661

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 180 LLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL 239
           LL  G    ID      +G + LH+AA +G  E +  L+  K    L+ RD +G T L L
Sbjct: 1   LLEHGP---IDLNATDGNGNTPLHLAAKYGALELVQWLL--KPGVDLNLRDSDGLTALDL 55

Query: 240 A 240
           A
Sbjct: 56  A 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	418
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02795	437	ankyrin-like protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.61
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.58
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
PF13606	30	Ank_3: Ankyrin repeat	99.0
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.97
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.96
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.93
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.9
COG5066	242	SCS2 VAMP-associated protein involved in inositol	98.87
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.84
KOG0439	218	consensus VAMP-associated protein involved in inos	98.84
PF13606	30	Ank_3: Ankyrin repeat	98.83
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.73
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.54
KOG2384	223	consensus Major histocompatibility complex protein	98.54
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.48
KOG0511	516	consensus Ankyrin repeat protein [General function	98.47
KOG0522	560	consensus Ankyrin repeat protein [General function	98.43
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.35
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.2
KOG2384	223	consensus Major histocompatibility complex protein	98.2
KOG0511	516	consensus Ankyrin repeat protein [General function	98.18
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.17
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.89
KOG2505	591	consensus Ankyrin repeat protein [General function	97.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.21
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.15
KOG2505	591	consensus Ankyrin repeat protein [General function	97.06
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.88
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.87
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.82
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.71
PF14874	102	PapD-like: Flagellar-associated PapD-like	95.38
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.14
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.22
PLN03218	1060	maturation of RBCL 1; Provisional	85.25
PLN03218	1060	maturation of RBCL 1; Provisional	81.96

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.2e-44  Score=340.10  Aligned_cols=293  Identities=15%  Similarity=0.126  Sum_probs=250.5

Q ss_pred             CccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHH
Q 048601           97 SADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDM  176 (418)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  176 (418)
                      +.+.++.++..-.+     ++ ..+..|.||||+|+..|+.++|++|+++|++++  ..+..+.||||+|+....+..++
T Consensus        51 ~~~iv~~Ll~~Gad-----vn-~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin--~~d~~g~TpLh~A~~~~~~~~e~  122 (446)
T PHA02946         51 DERFVEELLHRGYS-----PN-ETDDDGNYPLHIASKINNNRIVAMLLTHGADPN--ACDKQHKTPLYYLSGTDDEVIER  122 (446)
T ss_pred             CHHHHHHHHHCcCC-----CC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC--CCCCCCCCHHHHHHHcCCchHHH
Confidence            44556666644321     22 234579999999999999999999999998874  35678899999998733335899


Q ss_pred             HHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCC--HHHHHHHHH
Q 048601          177 VSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS--IGCAKVLLE  254 (418)
Q Consensus       177 v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~--~~~v~~Ll~  254 (418)
                      +++|+++|++++.   ..+..|.|||| |+..|+.+++++|++.+.  +++.+|..|.||||+|+..++  .+++++|++
T Consensus       123 v~lLl~~Gadin~---~~d~~g~tpL~-aa~~~~~~vv~~Ll~~ga--d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~  196 (446)
T PHA02946        123 INLLVQYGAKINN---SVDEEGCGPLL-ACTDPSERVFKKIMSIGF--EARIVDKFGKNHIHRHLMSDNPKASTISWMMK  196 (446)
T ss_pred             HHHHHHcCCCccc---ccCCCCCcHHH-HHHCCChHHHHHHHhccc--cccccCCCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence            9999999999874   15788999997 677799999999998765  778899999999999987554  799999999


Q ss_pred             cCCCCCCCCCCCccHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHhc-----------
Q 048601          255 SGADKEAKGKDGKTSLHNAAANG--DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI-EVLEVLQR-----------  320 (418)
Q Consensus       255 ~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~~~~l~~-----------  320 (418)
                      +|++++.+|.+|.||||+|+..|  +.+++++|++ |++++.+|..|.||||+|+..++. ++++.|+.           
T Consensus       197 ~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~  275 (446)
T PHA02946        197 LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVN  275 (446)
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHH
Confidence            99999999999999999999986  8899999995 899999999999999999999874 66655532           


Q ss_pred             ----------------------CchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          321 ----------------------GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       321 ----------------------~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                                            .++++.|+..|+.+++++|+++|+       .|.||||+|+.+|+.++|++|+++|++
T Consensus       276 ~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~  348 (446)
T PHA02946        276 ICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFS  348 (446)
T ss_pred             HHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCC
Confidence                                  167999999999999999999874       378999999999999999999999999


Q ss_pred             CCcCCCCCCcHhHHHHhcCCcceeehhhhccCCc
Q 048601          379 VECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGT  412 (418)
Q Consensus       379 ~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~  412 (418)
                      ++.. ..|.|||++|+.+++.++++.|+.++++.
T Consensus       349 ~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~~  381 (446)
T PHA02946        349 VDSV-VNGHTCMSECVRLNNPVILSKLMLHNPTS  381 (446)
T ss_pred             CCCc-cccccHHHHHHHcCCHHHHHHHHhcCccH
Confidence            9985 68999999999999999999999877653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-44  Score=346.50  Aligned_cols=270  Identities=24%  Similarity=0.327  Sum_probs=242.6

Q ss_pred             eecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH-----HHHHhhCCHHHHHHHHHcCCCCcccccc
Q 048601          119 KIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV-----ATELAANSEDMVSLLLRAGLSIEIDERV  193 (418)
Q Consensus       119 ~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~-----a~~~~~~~~~~v~~Ll~~g~~~~~~~~~  193 (418)
                      .....+.||||.|+..|+.++|++|+++|+++..  ....+.+++++     |+.  .|+.+++++|+++|++++.    
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~--~~~~~~t~L~~~~~~~a~~--~~~~~iv~~Ll~~ga~i~~----  101 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILLDNGADINS--STKNNSTPLHYLSNIKYNL--TDVKEIVKLLLEYGANVNA----  101 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHHHcCCCCCC--ccccCcCHHHHHHHHHHHh--hchHHHHHHHHHCCCCCCC----
Confidence            3456789999999999999999999999987643  34567899999     888  8999999999999999987    


Q ss_pred             cCCCCchHHHHHH--HcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCccH
Q 048601          194 KTKDGWSELHVAA--AFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT--SIGCAKVLLESGADKEAKGKDGKTS  269 (418)
Q Consensus       194 ~~~~~~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~g~t~  269 (418)
                      .+..|.||||+|+  ..|+.+++++|++.+.  +++..+..|.||||+|+..|  +.+++++|+++|++++.++..|.||
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tp  179 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGA--NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTP  179 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHHcCC--CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCH
Confidence            8999999999999  9999999999998765  77889999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCC--HHHHHHHHhCCCCCC
Q 048601          270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGE--LEGLESLLDKGASTN  347 (418)
Q Consensus       270 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~Ll~~g~~~~  347 (418)
                      ||+|+..|+.+++++|+++|++++..+..|.++++.               ..+++.|+..|+  .+++++|+++|+++|
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~---------------~t~l~~a~~~~~~~~~iv~~Ll~~g~din  244 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF---------------ETPLHIAACYNEITLEVVNYLLSYGVPIN  244 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH---------------HhHHHHHHHhCcCcHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999989544444               234445555555  666777999999999


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       348 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      .+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+.+++.+++++|+  +.|++++
T Consensus       245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll--~~g~~i~  310 (480)
T PHA03100        245 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLL--NNGPSIK  310 (480)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHH--hcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999  5566654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.1e-44  Score=345.80  Aligned_cols=304  Identities=17%  Similarity=0.204  Sum_probs=247.5

Q ss_pred             CCccccccccccCCCCCccceeeeecccchHHHHHHHH--CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhC-
Q 048601           96 GSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVS--NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAAN-  172 (418)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~--~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~-  172 (418)
                      ++.+.++.+++...    .+++.+.+..|.||||.|+.  .++.+++++|+++|++++.  .+..+.||||+|+.  .| 
T Consensus       153 v~leiVk~LLe~G~----ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~--kD~~G~TPLH~Aa~--~g~  224 (764)
T PHA02716        153 IDLDLIKYMVDVGI----VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNL--QNNHLITPLHTYLI--TGN  224 (764)
T ss_pred             CCHHHHHHHHHCCC----CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHH--cCC
Confidence            56666666665431    12333335679999999875  4689999999999988744  46689999999999  66 


Q ss_pred             -CHHHHHHHHHcCCCCcccccccCCCCchHHHHH-------------------------------------HHcCCHHHH
Q 048601          173 -SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVA-------------------------------------AAFGRTEEI  214 (418)
Q Consensus       173 -~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A-------------------------------------~~~g~~~~v  214 (418)
                       +.+++++|+++|++++.    ++..|.||||+|                                     +..|+.+++
T Consensus       225 ~~~eIVklLLe~GADVN~----kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiV  300 (764)
T PHA02716        225 VCASVIKKIIELGGDMDM----KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV  300 (764)
T ss_pred             CCHHHHHHHHHcCCCCCC----CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHH
Confidence             46999999999999998    899999999975                                     445788899


Q ss_pred             HHHHhcccCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH--------------cCC
Q 048601          215 SSLVRMKEYESLDCRDKEGRTPLHLAVN--KTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA--------------NGD  278 (418)
Q Consensus       215 ~~Ll~~~~~~~~~~~~~~~~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--------------~g~  278 (418)
                      ++|++.+.  +++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+.              .++
T Consensus       301 klLLe~GA--dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~  378 (764)
T PHA02716        301 YSFLQPGV--KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIR  378 (764)
T ss_pred             HHHHhCCC--ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccCh
Confidence            99997665  788899999999999864  468999999999999999999999999999875              378


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHH----HHHcCCHHHHHHHhcCch----------------------HHHHHHcCC
Q 048601          279 RRMVEMLIEMGADPTIKDDRGRSCFDV----ARDKGHIEVLEVLQRGEA----------------------VLTAARRGE  332 (418)
Q Consensus       279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~----A~~~~~~~~~~~l~~~~~----------------------~~~a~~~g~  332 (418)
                      .+++++|+++|++++.++..|+||||.    |...++.+++++|.+.+.                      ++.++..+.
T Consensus       379 ~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~  458 (764)
T PHA02716        379 LDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYN  458 (764)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcC
Confidence            999999999999999999999999994    334578999999876432                      233443333


Q ss_pred             H------------------HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCH-----HHHHHHHHcCCCCCcCCCCCCcH
Q 048601          333 L------------------EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHK-----HVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       333 ~------------------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~-----~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      .                  +++..++..+.++|..|..|+||||+|+..|+.     +++++|++.|+|++.+|+.|+||
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TP  538 (764)
T PHA02716        459 IPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTP  538 (764)
T ss_pred             cchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCH
Confidence            2                  233444556778899999999999999999986     45699999999999999999999


Q ss_pred             hHHHHhcCCc-----ceeehhhhccCCcc
Q 048601          390 LHLAVEGGRV-----EPLLFIWLKQWGTM  413 (418)
Q Consensus       390 l~~A~~~g~~-----~~v~~Ll~~~~g~~  413 (418)
                      |++|+++|+.     ++|+.|+.++++.+
T Consensus       539 Lh~A~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        539 LMLTMRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             HHHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence            9999999987     99999996555443

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-43  Score=355.75  Aligned_cols=316  Identities=24%  Similarity=0.260  Sum_probs=255.5

Q ss_pred             chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHH----------------------------------
Q 048601           85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRH----------------------------------  130 (418)
Q Consensus        85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~----------------------------------  130 (418)
                      ....|+.|+.+|+.+.|+.++...|.-     ....+..|.||||+                                  
T Consensus        41 ~~t~LH~A~~~g~~e~V~~ll~~~~~~-----~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  115 (682)
T PHA02876         41 PFTAIHQALQLRQIDIVEEIIQQNPEL-----IYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKH  115 (682)
T ss_pred             cchHHHHHHHHHhhhHHHHHHHhCccc-----chhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHH
Confidence            367799999999999999999877641     12223445555553                                  


Q ss_pred             ------------------------------------HHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCH
Q 048601          131 ------------------------------------AVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSE  174 (418)
Q Consensus       131 ------------------------------------A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  174 (418)
                                                          |+..|+.+++++|+++|++++.  .+..+.||||+|+.  .|+.
T Consensus       116 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~--~d~~G~TpLh~Aa~--~G~~  191 (682)
T PHA02876        116 KLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNA--KDIYCITPIHYAAE--RGNA  191 (682)
T ss_pred             HHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCC--CCCCCCCHHHHHHH--CCCH
Confidence                                                4467889999999999988743  45678899999999  8999


Q ss_pred             HHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccC---------------------------CCCc
Q 048601          175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEY---------------------------ESLD  227 (418)
Q Consensus       175 ~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~---------------------------~~~~  227 (418)
                      ++|++|+++|++++.    .+..|.||||.|+..|+.+++++|++.+..                           .+++
T Consensus       192 ~iv~~LL~~Gad~n~----~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn  267 (682)
T PHA02876        192 KMVNLLLSYGADVNI----IALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVN  267 (682)
T ss_pred             HHHHHHHHCCCCcCc----cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            999999999999887    788888999999999998888887754321                           2456


Q ss_pred             cCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCccHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCCCHHHH
Q 048601          228 CRDKEGRTPLHLAVNKTSI-GCAKVLLESGADKEAKGKDGKTSLHNAAANG-DRRMVEMLIEMGADPTIKDDRGRSCFDV  305 (418)
Q Consensus       228 ~~~~~~~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  305 (418)
                      ..+..|.||||+|+..++. +++++|++.|++++..+..|.||||+|+..| +.+++++|+..|++++..+..|.||||+
T Consensus       268 ~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~  347 (682)
T PHA02876        268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQ  347 (682)
T ss_pred             CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHH
Confidence            6677889999999988886 5888999999999988889999999999888 5888899998888888888888899988


Q ss_pred             HHHc-CCHHHHHHHhc------------CchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC-HHHHHH
Q 048601          306 ARDK-GHIEVLEVLQR------------GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGH-KHVVLL  371 (418)
Q Consensus       306 A~~~-~~~~~~~~l~~------------~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~  371 (418)
                      |+.. ++.++++.|.+            .++++.|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++
T Consensus       348 A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~  427 (682)
T PHA02876        348 ASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKT  427 (682)
T ss_pred             HHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHH
Confidence            8875 46777777753            356888888888888888888888888888888888888887665 567888


Q ss_pred             HHHcCCCCCcCCCCCCcHhHHHHhcC-CcceeehhhhccCCcccc
Q 048601          372 LIEFGADVECQDNEGHAPLHLAVEGG-RVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       372 Ll~~ga~~~~~d~~g~t~l~~A~~~g-~~~~v~~Ll~~~~g~~~~  415 (418)
                      |+++|++++.+|..|+||||+|++.| +.+++++|+  +.|++++
T Consensus       428 Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl--~~Gad~n  470 (682)
T PHA02876        428 LIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLL--DNGADVN  470 (682)
T ss_pred             HHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHH--HCCCCCC
Confidence            88888888888888888888888765 678888888  4566654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-43  Score=335.10  Aligned_cols=287  Identities=25%  Similarity=0.299  Sum_probs=220.7

Q ss_pred             HHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHH
Q 048601           88 FLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVAT  167 (418)
Q Consensus        88 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~  167 (418)
                      .+..|+..|+.+.++.++...+..    +. .....|.||||.|+..|+.++|++|+++|++++.  ....+.+|++.|+
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~----~n-~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~--~~~~~~t~L~~A~   76 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNC----IN-ISVDETTTPLIDAIRSGDAKIVELFIKHGADINH--INTKIPHPLLTAI   76 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCC----CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHH
Confidence            467889999999999988665432    11 1234688999999999999999999999987643  3456788999999


Q ss_pred             HHhhCCHHHHHHHHHcCCCCcc-------------------cccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCcc
Q 048601          168 ELAANSEDMVSLLLRAGLSIEI-------------------DERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC  228 (418)
Q Consensus       168 ~~~~~~~~~v~~Ll~~g~~~~~-------------------~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  228 (418)
                      .  .|+.+++++|+++|+++..                   +.+..+..|.||||+|+..|+.+++++|++.+.  +++.
T Consensus        77 ~--~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga--d~n~  152 (434)
T PHA02874         77 K--IGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA--DVNI  152 (434)
T ss_pred             H--cCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCC--CCCC
Confidence            9  8999999999998876532                   112255667777777777777777777776544  5566


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q 048601          229 RDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARD  308 (418)
Q Consensus       229 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  308 (418)
                      ++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+.
T Consensus       153 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        153 EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH
Confidence            67777777777777777777777777777777777777777777777777777777777777777777777777777766


Q ss_pred             cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCcCCCCCC
Q 048601          309 KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKG-HKHVVLLLIEFGADVECQDNEGH  387 (418)
Q Consensus       309 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~d~~g~  387 (418)
                      .+.                      +.+++|+ .|++++.++..|+||||+|+..+ +.+++++|+++|++++.+|..|.
T Consensus       233 ~~~----------------------~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~  289 (434)
T PHA02874        233 HNR----------------------SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGE  289 (434)
T ss_pred             CCh----------------------HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCC
Confidence            543                      2334455 68899999999999999999876 89999999999999999999999


Q ss_pred             cHhHHHHhcC-Ccceeehhhhc
Q 048601          388 APLHLAVEGG-RVEPLLFIWLK  408 (418)
Q Consensus       388 t~l~~A~~~g-~~~~v~~Ll~~  408 (418)
                      |||++|++.+ ..++++.|+..
T Consensus       290 TpL~~A~~~~~~~~~ik~ll~~  311 (434)
T PHA02874        290 NPIDTAFKYINKDPVIKDIIAN  311 (434)
T ss_pred             CHHHHHHHhCCccHHHHHHHHh
Confidence            9999999987 67788888743

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-42  Score=333.02  Aligned_cols=287  Identities=24%  Similarity=0.282  Sum_probs=242.1

Q ss_pred             HHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCC---CHHHHHHHHhcchhhhhcCChhhhhhhHHHHH
Q 048601           91 KATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNG---DFNAVKSILKRQKMILAGLSSAEAESLYRVAT  167 (418)
Q Consensus        91 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g---~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~  167 (418)
                      .+...++.+.++.++..-.+     ++. .+..|.||||+|+..|   +.+++++|++.|++++.  ....|.||+|+|+
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~-----vn~-~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~--~~~~g~TpLh~A~   91 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGAD-----VNF-RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA--PERCGFTPLHLYL   91 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCC-----ccc-CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCC--CCCCCCCHHHHHH
Confidence            44555677777777755321     222 2345889999999988   99999999999988744  3457889999998


Q ss_pred             HHhhC-CHHHHHHHHHcCCCCcccccccCCCCchHHHHHH--HcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC
Q 048601          168 ELAAN-SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAA--AFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT  244 (418)
Q Consensus       168 ~~~~~-~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~  244 (418)
                      .  .| ..+++++|+++|++++.    .+..|.||||+|+  ..++.+++++|++.+.  +++..+..|.||||+|+..+
T Consensus        92 ~--~~~~~~iv~lLl~~ga~in~----~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~ga--d~~~~d~~g~tpL~~a~~~~  163 (471)
T PHA03095         92 Y--NATTLDVIKLLIKAGADVNA----KDKVGRTPLHVYLSGFNINPKVIRLLLRKGA--DVNALDLYGMTPLAVLLKSR  163 (471)
T ss_pred             H--cCCcHHHHHHHHHcCCCCCC----CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCC--CCCccCCCCCCHHHHHHHcC
Confidence            8  77 59999999999998887    8888999999999  5567889999998765  67888899999999888765


Q ss_pred             --CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhc
Q 048601          245 --SIGCAKVLLESGADKEAKGKDGKTSLHNAAAN--GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR  320 (418)
Q Consensus       245 --~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  320 (418)
                        +.+++++|+++|++++..+..|.||||+|+..  ++.+++++|++.|++++.+|..|.||||+|+..|+..       
T Consensus       164 ~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~-------  236 (471)
T PHA03095        164 NANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCK-------  236 (471)
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCch-------
Confidence              58899999999999988888999999988864  7788999999999999999999999999998877642       


Q ss_pred             CchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcc
Q 048601          321 GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE  400 (418)
Q Consensus       321 ~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~  400 (418)
                                  ..+++.|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+|||++|+.+|+.+
T Consensus       237 ------------~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        237 ------------RSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGR  304 (471)
T ss_pred             ------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHH
Confidence                        23456689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeehhhhccCCc
Q 048601          401 PLLFIWLKQWGT  412 (418)
Q Consensus       401 ~v~~Ll~~~~g~  412 (418)
                      ++++|+..++..
T Consensus       305 ~v~~LL~~~~~~  316 (471)
T PHA03095        305 AVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHHhCCCH
Confidence            999999666554

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=341.16  Aligned_cols=308  Identities=20%  Similarity=0.242  Sum_probs=260.0

Q ss_pred             HHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHH
Q 048601           87 RFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVA  166 (418)
Q Consensus        87 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a  166 (418)
                      ..+..+...++.+.++.++..-.+     ++. .+..|.||||+|+..|+.++|++|+++|++++.  ....+.++++.|
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gad-----vn~-~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~--~~~~g~t~L~~A  218 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGAD-----VNA-KDIYCITPIHYAAERGNAKMVNLLLSYGADVNI--IALDDLSVLECA  218 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCC-----CCC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCc--cCCCCCCHHHHH
Confidence            446667777888777766654332     222 244699999999999999999999999987633  345677888888


Q ss_pred             HHHhhCCHHHHHHHHHc-----------------------------CCCCcccccccCCCCchHHHHHHHcCCH-HHHHH
Q 048601          167 TELAANSEDMVSLLLRA-----------------------------GLSIEIDERVKTKDGWSELHVAAAFGRT-EEISS  216 (418)
Q Consensus       167 ~~~~~~~~~~v~~Ll~~-----------------------------g~~~~~~~~~~~~~~~t~L~~A~~~g~~-~~v~~  216 (418)
                      +.  .|+.+++++|++.                             |++++.    .+..|.||||+|+..|+. +++++
T Consensus       219 ~~--~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~----~d~~g~TpLh~Aa~~~~~~~iv~l  292 (682)
T PHA02876        219 VD--SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNS----IDDCKNTPLHHASQAPSLSRLVPK  292 (682)
T ss_pred             HH--cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhCCCHHHHHHH
Confidence            77  6777666665554                             444544    778899999999999997 58888


Q ss_pred             HHhcccCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCCCc
Q 048601          217 LVRMKEYESLDCRDKEGRTPLHLAVNKT-SIGCAKVLLESGADKEAKGKDGKTSLHNAAAN-GDRRMVEMLIEMGADPTI  294 (418)
Q Consensus       217 Ll~~~~~~~~~~~~~~~~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~  294 (418)
                      |++.+.  +++.+|..|.||||+|+..| ..+++++|+..|++++..+..|.||||+|+.. ++.+++++|++.|++++.
T Consensus       293 Ll~~ga--din~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~  370 (682)
T PHA02876        293 LLERGA--DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA  370 (682)
T ss_pred             HHHCCC--CCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc
Confidence            887665  78889999999999999999 59999999999999999999999999999985 579999999999999999


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHhcC------------chHHHHHHcCC-HHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q 048601          295 KDDRGRSCFDVARDKGHIEVLEVLQRG------------EAVLTAARRGE-LEGLESLLDKGASTNYCDQYGLTPLHIAA  361 (418)
Q Consensus       295 ~~~~g~t~l~~A~~~~~~~~~~~l~~~------------~~~~~a~~~g~-~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  361 (418)
                      +|..|.||||+|+..|+.+++++|.+.            ++++.|+..++ ..++++|+++|+++|.+|..|+||||+|+
T Consensus       371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa  450 (682)
T PHA02876        371 RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYAC  450 (682)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHH
Confidence            999999999999999999999999753            46888877655 67899999999999999999999999999


Q ss_pred             HcC-CHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccc
Q 048601          362 IKG-HKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV  414 (418)
Q Consensus       362 ~~g-~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~  414 (418)
                      ..| +.+++++|+++|++++.+|..|.||+++|+..+  ++++.|+.  +|+++
T Consensus       451 ~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~--~~a~~  500 (682)
T PHA02876        451 KKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLH--YGAEL  500 (682)
T ss_pred             HhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHH--CCCCC
Confidence            977 789999999999999999999999999999866  57888884  45443

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.7e-41  Score=320.53  Aligned_cols=295  Identities=17%  Similarity=0.183  Sum_probs=248.1

Q ss_pred             HHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHH--CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHH
Q 048601           91 KATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVS--NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATE  168 (418)
Q Consensus        91 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~--~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~  168 (418)
                      .+...++.+.++.++....+           ..+.++||.++.  .++.++|++|+++|++++.  .+..+.||||+|+.
T Consensus        15 ~~~~~~n~~~~~~~l~~~~~-----------~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~--~d~~G~TpLh~Aa~   81 (446)
T PHA02946         15 AKYNSKNLDVFRNMLQAIEP-----------SGNYHILHAYCGIKGLDERFVEELLHRGYSPNE--TDDDGNYPLHIASK   81 (446)
T ss_pred             HHHccCcHHHHHHHHhccCC-----------CCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCc--cCCCCCCHHHHHHH
Confidence            44444566666666654332           124688998764  4578999999999988743  46789999999999


Q ss_pred             HhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcC--CHHHHHHHHhcccCCCCc-cCCCCCCcHHHHHHHcCC
Q 048601          169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFG--RTEEISSLVRMKEYESLD-CRDKEGRTPLHLAVNKTS  245 (418)
Q Consensus       169 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~-~~~~~~~t~L~~A~~~~~  245 (418)
                        .|+.+++++|+++|++++.    +|..|.||||+|+..+  ..+++++|++.+.  +++ ..+..|.|||+ |+..|+
T Consensus        82 --~g~~eiv~lLL~~GAdin~----~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Ga--din~~~d~~g~tpL~-aa~~~~  152 (446)
T PHA02946         82 --INNNRIVAMLLTHGADPNA----CDKQHKTPLYYLSGTDDEVIERINLLVQYGA--KINNSVDEEGCGPLL-ACTDPS  152 (446)
T ss_pred             --cCCHHHHHHHHHCcCCCCC----CCCCCCCHHHHHHHcCCchHHHHHHHHHcCC--CcccccCCCCCcHHH-HHHCCC
Confidence              8999999999999999988    9999999999999876  4899999998775  556 46889999997 677799


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHhc-
Q 048601          246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANG--DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKG--HIEVLEVLQR-  320 (418)
Q Consensus       246 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--~~~~~~~l~~-  320 (418)
                      .+++++|++.|++++.+|..|.||||+|+..+  +.+++++|++.|++++.+|..|.||||+|+..+  +.+++++|.. 
T Consensus       153 ~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~g  232 (446)
T PHA02946        153 ERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPS  232 (446)
T ss_pred             hHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcC
Confidence            99999999999999999999999999988755  579999999999999999999999999999986  8899999864 


Q ss_pred             ----------CchHHHHHHcCC-HHHHHHHHhCCCCCCc--------------------C-CCCCCcHHHHHHHcCCHHH
Q 048601          321 ----------GEAVLTAARRGE-LEGLESLLDKGASTNY--------------------C-DQYGLTPLHIAAIKGHKHV  368 (418)
Q Consensus       321 ----------~~~~~~a~~~g~-~~~~~~Ll~~g~~~~~--------------------~-~~~g~t~L~~A~~~g~~~~  368 (418)
                                .++++.|+..++ .++++.|+++|++++.                    . ...|.||||+|+.+|+.++
T Consensus       233 adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~ei  312 (446)
T PHA02946        233 TDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRC  312 (446)
T ss_pred             CCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHH
Confidence                      357899999988 5899999999875421                    1 1357899999999999999


Q ss_pred             HHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccccc
Q 048601          369 VLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       369 v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~~  416 (418)
                      |++|+++|+       .|+|||++|+.+|+.++|++|+  ..|++++.
T Consensus       313 vk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll--~~ga~~n~  351 (446)
T PHA02946        313 VKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLL--FNHFSVDS  351 (446)
T ss_pred             HHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHH--HCCCCCCC
Confidence            999999975       4689999999999999999999  66666653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.6e-41  Score=318.04  Aligned_cols=257  Identities=26%  Similarity=0.357  Sum_probs=201.2

Q ss_pred             HHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHH
Q 048601          127 LLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAA  206 (418)
Q Consensus       127 ~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~  206 (418)
                      .|+.|+..|+++.|+.|++.++... ......+.+|++.|+.  .|+.+++++|++.|++++.    .+..|.||||.|+
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~-n~~~~~~~tpL~~A~~--~g~~~iv~~Ll~~Ga~~n~----~~~~~~t~L~~A~   76 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCI-NISVDETTTPLIDAIR--SGDAKIVELFIKHGADINH----INTKIPHPLLTAI   76 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCC-CCcCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHH
Confidence            6889999999999999998665432 2344578899999999  8999999999999999987    8889999999999


Q ss_pred             HcCCHHHHHHHHhcccC---------------------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 048601          207 AFGRTEEISSLVRMKEY---------------------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKD  265 (418)
Q Consensus       207 ~~g~~~~v~~Ll~~~~~---------------------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  265 (418)
                      ..|+.+++++|++.+..                     .+++.++..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus        77 ~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~  156 (434)
T PHA02874         77 KIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN  156 (434)
T ss_pred             HcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCC
Confidence            99999999999986542                     234445556666666666666666666666666666666666


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601          266 GKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS  345 (418)
Q Consensus       266 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~  345 (418)
                      |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+                     .+++++|+++|++
T Consensus       157 g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~---------------------~~iv~~Ll~~g~~  215 (434)
T PHA02874        157 GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGD---------------------YACIKLLIDHGNH  215 (434)
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC---------------------HHHHHHHHhCCCC
Confidence            6666666666666666666666666666666666666666655555                     4555569999999


Q ss_pred             CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcC-CcceeehhhhccCCcccc
Q 048601          346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG-RVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g-~~~~v~~Ll~~~~g~~~~  415 (418)
                      ++..+..|.||||.|+..++ +++++|+ .|++++.+|..|+||||+|+..+ +.+++++|+  +.|++++
T Consensus       216 i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll--~~gad~n  282 (434)
T PHA02874        216 IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILL--YHKADIS  282 (434)
T ss_pred             CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHH--HCcCCCC
Confidence            99999999999999999765 5667776 68999999999999999999875 789999999  5566665

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=293.47  Aligned_cols=232  Identities=21%  Similarity=0.205  Sum_probs=171.2

Q ss_pred             CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHH
Q 048601          134 NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEE  213 (418)
Q Consensus       134 ~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~  213 (418)
                      .++.+++++|+++++..    .+..+.|+||+|+.  .|+.+++++|+++|++++.    .  ++.||||+|+..|+.++
T Consensus         9 ~~~~~~~~~Lis~~a~~----~D~~G~TpLh~Aa~--~g~~eiv~~Ll~~ga~~n~----~--d~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK----ADVHGHSALYYAIA--DNNVRLVCTLLNAGALKNL----L--ENEFPLHQAATLEDTKI   76 (284)
T ss_pred             cCHHHHHHHHHhCCCCC----CCCCCCcHHHHHHH--cCCHHHHHHHHHCcCCCcC----C--CCCCHHHHHHHCCCHHH
Confidence            45677777777776532    44567777777777  7777888888877776654    3  35678888888888888


Q ss_pred             HHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc-cHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601          214 ISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGK-TSLHNAAANGDRRMVEMLIEMGADP  292 (418)
Q Consensus       214 v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~  292 (418)
                      +++|++.+.  +++.+|..|.||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++.+.
T Consensus        77 V~lLL~~Ga--dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~  154 (284)
T PHA02791         77 VKILLFSGM--DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  154 (284)
T ss_pred             HHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            888776544  5667777778888888888888888888888877777777664 7788888888888888887776432


Q ss_pred             CccC-CCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH-HHHHHHcCCHHHHH
Q 048601          293 TIKD-DRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP-LHIAAIKGHKHVVL  370 (418)
Q Consensus       293 ~~~~-~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~  370 (418)
                        .+ ..|.||||+|+..|+.++++.                     |+++|+++|.++..|.|| ||+|+.+|+.++|+
T Consensus       155 --~d~~~g~TpLh~Aa~~g~~eiv~l---------------------LL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~  211 (284)
T PHA02791        155 --FDLAILLSCIHITIKNGHVDMMIL---------------------LLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQ  211 (284)
T ss_pred             --cccccCccHHHHHHHcCCHHHHHH---------------------HHHCCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence              12 246777777777766665554                     788888888888888876 88888888888888


Q ss_pred             HHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601          371 LLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       371 ~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~  409 (418)
                      +|+++|++++.+|..| ++|      |+.|++++||++-
T Consensus       212 lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~  243 (284)
T PHA02791        212 ALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKH  243 (284)
T ss_pred             HHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhh
Confidence            8888888888888754 444      7888888888654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-40  Score=320.44  Aligned_cols=289  Identities=20%  Similarity=0.226  Sum_probs=231.1

Q ss_pred             hccCCccccccccccCCCCCccceeeeecccchHHHHHHHHC--CCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHh
Q 048601           93 TVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSN--GDFNAVKSILKRQKMILAGLSSAEAESLYRVATELA  170 (418)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~--g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~  170 (418)
                      ....+.+.++.++..-.     +++..  ..|.|+|+.++..  ++.++|+.|+++|++++..   ..+.||++.|+...
T Consensus        11 ~~~~~~~~v~~LL~~Ga-----dvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~---~~~~tpL~~a~~~~   80 (494)
T PHA02989         11 SDTVDKNALEFLLRTGF-----DVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK---GYIETPLCAVLRNR   80 (494)
T ss_pred             CCcCcHHHHHHHHHcCC-----Ccccc--cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC---CCCCCcHHHHHhcc
Confidence            33457777777775432     23333  3577887765544  3689999999999887542   24578888776511


Q ss_pred             ----hCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHc---CCHHHHHHHHhcccCCCC-ccCCCCCCcHHHHHHH
Q 048601          171 ----ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAF---GRTEEISSLVRMKEYESL-DCRDKEGRTPLHLAVN  242 (418)
Q Consensus       171 ----~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~-~~~~~~~~t~L~~A~~  242 (418)
                          .+..+++++|+++|++++.    ++..|.||||.|+..   |+.+++++|++.+.  ++ +.++..|.||||+|+.
T Consensus        81 ~~~~~~~~~iv~~Ll~~Gadin~----~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Ga--din~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         81 EITSNKIKKIVKLLLKFGADINL----KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGI--NVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             CcchhhHHHHHHHHHHCCCCCCC----CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCC--CcccccCCCCCCHHHHHHH
Confidence                2457899999999998887    888899999987765   67899999998765  66 6788889999998875


Q ss_pred             c--CCHHHHHHHHHcCCCCCC-CCCCCccHHHHHHHcC----CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 048601          243 K--TSIGCAKVLLESGADKEA-KGKDGKTSLHNAAANG----DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL  315 (418)
Q Consensus       243 ~--~~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  315 (418)
                      .  ++.+++++|+++|++++. .+..|.||||.|+..+    +.+++++|+++|++++..+..+.|++|.++..+.    
T Consensus       155 ~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~----  230 (494)
T PHA02989        155 SFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK----  230 (494)
T ss_pred             hccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch----
Confidence            4  578999999999999887 5778999999887654    8899999999999999888888899888765432    


Q ss_pred             HHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHh
Q 048601          316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE  395 (418)
Q Consensus       316 ~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  395 (418)
                                 +...+..+++++|+ +|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+|||++|++
T Consensus       231 -----------~~~~~~~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~  298 (494)
T PHA02989        231 -----------ILSKKEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIK  298 (494)
T ss_pred             -----------hhcccchHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence                       22344567777665 479999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeehhhhccCCcc
Q 048601          396 GGRVEPLLFIWLKQWGTM  413 (418)
Q Consensus       396 ~g~~~~v~~Ll~~~~g~~  413 (418)
                      +|+.++|++|++.++|..
T Consensus       299 ~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        299 HGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             cCCHHHHHHHHhcCCChH
Confidence            999999999998887765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-40  Score=316.60  Aligned_cols=301  Identities=19%  Similarity=0.214  Sum_probs=211.5

Q ss_pred             HHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHH
Q 048601           90 IKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATEL  169 (418)
Q Consensus        90 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~  169 (418)
                      ..+.+..+.+.+.+.+..+.....  ........+.||||+|+..|+.++|++|+++|++++.  .+..+.||||+|+. 
T Consensus         5 ~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~--~d~~g~TpLh~A~~-   79 (477)
T PHA02878          5 YKSMYTDNYETILKYIEYIDHTEN--YSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQ--PDHRDLTPLHIICK-   79 (477)
T ss_pred             HHHHHhccHHHHHHHHHHHhhhhh--hcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHH-
Confidence            344455555555555555322111  1112345688999999999999999999999987743  46688999999999 


Q ss_pred             hhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC--CHH
Q 048601          170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT--SIG  247 (418)
Q Consensus       170 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~  247 (418)
                       .|+.+++++|++.+.+...      ..+.+|++.|+..|+.+++++|+..+....   .+. ....+..+...+  ..+
T Consensus        80 -~g~~~~v~~Ll~~~~~~~~------~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~---~~~-~~~~~~~~~~~~~~~~~  148 (477)
T PHA02878         80 -EPNKLGMKEMIRSINKCSV------FYTLVAIKDAFNNRNVEIFKIILTNRYKNI---QTI-DLVYIDKKSKDDIIEAE  148 (477)
T ss_pred             -CccHhHHHHHHHHHhcccc------ccchhhHHHHHHcCCHHHHHHHHhCcccCc---ccC-cHHHHhhccchhhHHHH
Confidence             8999999999998765432      456789999999999999988886532100   000 000111111111  234


Q ss_pred             HHHHHHHcCCCCCCCCCC-CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC-----
Q 048601          248 CAKVLLESGADKEAKGKD-GKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG-----  321 (418)
Q Consensus       248 ~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~-----  321 (418)
                      ++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|.+.     
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            666666666666666666 66666666666666666666666666666666666666666666666666666432     


Q ss_pred             -------chHHHHHHc-CCHHHHHHHHhCCCCCCcCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHH
Q 048601          322 -------EAVLTAARR-GELEGLESLLDKGASTNYCDQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL  392 (418)
Q Consensus       322 -------~~~~~a~~~-g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~  392 (418)
                             ++++.|+.. ++.+++++|+++|+++|.++. .|.||||+|  .++.+++++|+++|+|++..|..|.|||++
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~  306 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS  306 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence                   345566654 577888889999999999886 799999999  578999999999999999999999999999


Q ss_pred             HHhcC-Ccceeehhhhc
Q 048601          393 AVEGG-RVEPLLFIWLK  408 (418)
Q Consensus       393 A~~~g-~~~~v~~Ll~~  408 (418)
                      |+..+ ..+++++|+.+
T Consensus       307 A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        307 AVKQYLCINIGRILISN  323 (477)
T ss_pred             HHHHcCccchHHHHHHH
Confidence            99754 56777777643

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=306.84  Aligned_cols=253  Identities=26%  Similarity=0.322  Sum_probs=223.3

Q ss_pred             chHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHH
Q 048601          124 GPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELH  203 (418)
Q Consensus       124 g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~  203 (418)
                      .+++|+.|+..|+.+++++|+++|++++.  ....+.+|||+|+.  .|+.+++++|+++|++++.    .+..+.||||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~--~~~~g~tpL~~A~~--~~~~~~v~~Ll~~ga~~~~----~~~~~~t~L~   73 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNF--EIYDGISPIKLAMK--FRDSEAIKLLMKHGAIPDV----KYPDIESELH   73 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCc--cCCCCCCHHHHHHH--cCCHHHHHHHHhCCCCccc----cCCCcccHHH
Confidence            46799999999999999999999987643  34578999999999  8999999999999998876    7788899999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHH
Q 048601          204 VAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVE  283 (418)
Q Consensus       204 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  283 (418)
                      .|+..|+.+++++|++.+. ...+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGK-FADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCC-cccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999998765 233455678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC-CcHHHHHHH
Q 048601          284 MLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG-LTPLHIAAI  362 (418)
Q Consensus       284 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~  362 (418)
                      +|+++|++++.+|..|.||||+|+..|+.+++++                     |+++|++++..+..| .||+|+|+.
T Consensus       153 ~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~---------------------Ll~~ga~~n~~~~~~~~t~l~~A~~  211 (413)
T PHA02875        153 LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM---------------------LLDSGANIDYFGKNGCVAALCYAIE  211 (413)
T ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHhCCCCCCcCCCCCCchHHHHHHH
Confidence            9999999999999999999999988887776655                     899999999988877 588999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcC---CCCCCcHhHHHHhc---CCcceeehhh
Q 048601          363 KGHKHVVLLLIEFGADVECQ---DNEGHAPLHLAVEG---GRVEPLLFIW  406 (418)
Q Consensus       363 ~g~~~~v~~Ll~~ga~~~~~---d~~g~t~l~~A~~~---g~~~~v~~Ll  406 (418)
                      .|+.+++++|+++|+|++..   +..+.||++.+...   ...+.++.++
T Consensus       212 ~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        212 NNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             cCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            99999999999999999865   67789999987643   3334444333

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=9.6e-39  Score=310.51  Aligned_cols=268  Identities=16%  Similarity=0.228  Sum_probs=212.3

Q ss_pred             HCCCHHHHHHHHhcc-hhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCC-
Q 048601          133 SNGDFNAVKSILKRQ-KMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGR-  210 (418)
Q Consensus       133 ~~g~~~~vk~Ll~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~-  210 (418)
                      ..++.++|++|+++| ++++.. .+..+.+|||.|+....++.+++++|+++|++++.    ++..|.||||+|+..|+ 
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~-~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~----kD~~G~TPLH~Aa~~g~~  225 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYV-CKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNL----QNNHLITPLHTYLITGNV  225 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccc-cCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC----CCCCCCCHHHHHHHcCCC
Confidence            468999999999999 776432 25678999998876445789999999999999998    89999999999999996 


Q ss_pred             -HHHHHHHHhcccCCCCccCCCCCCcHHHHH-------------------------------------HHcCCHHHHHHH
Q 048601          211 -TEEISSLVRMKEYESLDCRDKEGRTPLHLA-------------------------------------VNKTSIGCAKVL  252 (418)
Q Consensus       211 -~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A-------------------------------------~~~~~~~~v~~L  252 (418)
                       .+++++|++.+.  +++.++..|.||||+|                                     ++.|+.+++++|
T Consensus       226 ~~eIVklLLe~GA--DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklL  303 (764)
T PHA02716        226 CASVIKKIIELGG--DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSF  303 (764)
T ss_pred             CHHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHH
Confidence             489999998765  7899999999999975                                     345677888888


Q ss_pred             HHcCCCCCCCCCCCccHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHc
Q 048601          253 LESGADKEAKGKDGKTSLHNAAA--NGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR  330 (418)
Q Consensus       253 l~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~  330 (418)
                      +++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+....  ++..+.     ..+...
T Consensus       304 Le~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~la--v~~~ld-----~~~~~~  376 (764)
T PHA02716        304 LQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLS--VVNILD-----PETDND  376 (764)
T ss_pred             HhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhh--hhcccc-----cccccc
Confidence            88888888888888888888754  457888888888888888888888888888765211  111000     001224


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHH----HHHcCCHHHHHHHHHcCC-----------------------------
Q 048601          331 GELEGLESLLDKGASTNYCDQYGLTPLHI----AAIKGHKHVVLLLIEFGA-----------------------------  377 (418)
Q Consensus       331 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~----A~~~g~~~~v~~Ll~~ga-----------------------------  377 (418)
                      ++.+++++|+++|++++.++..|.||||.    |...++.+++++|++.|+                             
T Consensus       377 ~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~  456 (764)
T PHA02716        377 IRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAK  456 (764)
T ss_pred             ChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHh
Confidence            68899999999999999999999999983    233567889888887643                             


Q ss_pred             --------------------------------CCCcCCCCCCcHhHHHHhcCCccee-----ehhhhccCCccccc
Q 048601          378 --------------------------------DVECQDNEGHAPLHLAVEGGRVEPL-----LFIWLKQWGTMVSH  416 (418)
Q Consensus       378 --------------------------------~~~~~d~~g~t~l~~A~~~g~~~~v-----~~Ll~~~~g~~~~~  416 (418)
                                                      +++..|..|+||||+|+.+|+.+++     ++|+  +.|++++.
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL--~~GADIN~  530 (764)
T PHA02716        457 YNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL--SIQYNINI  530 (764)
T ss_pred             cCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH--hCCCCCcc
Confidence                                            2345578899999999999988666     9999  66777764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-39  Score=311.39  Aligned_cols=256  Identities=24%  Similarity=0.307  Sum_probs=231.1

Q ss_pred             HHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhC---CHHHHHHHHHcCCCCcccccccCCCCchHHHHH
Q 048601          129 RHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAAN---SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVA  205 (418)
Q Consensus       129 ~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A  205 (418)
                      ..|+..+++++|++|+++|++++.  ....+.|+||+|+.  .+   +.+++++|++.|++++.    .+..|.||||+|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~--~~~~g~t~Lh~a~~--~~~~~~~~iv~~Ll~~Gadin~----~~~~g~TpLh~A   90 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNF--RGEYGKTPLHLYLH--YSSEKVKDIVRLLLEAGADVNA----PERCGFTPLHLY   90 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCccc--CCCCCCCHHHHHHH--hcCCChHHHHHHHHHCCCCCCC----CCCCCCCHHHHH
Confidence            557888999999999999988743  45678999999999  56   99999999999999998    888999999999


Q ss_pred             HHcC-CHHHHHHHHhcccCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC--CHH
Q 048601          206 AAFG-RTEEISSLVRMKEYESLDCRDKEGRTPLHLAV--NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG--DRR  280 (418)
Q Consensus       206 ~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~  280 (418)
                      +..| +.+++++|++.+.  +++.++..|.||||+|+  ..++.+++++|+++|++++..+..|.||||+|+..+  +.+
T Consensus        91 ~~~~~~~~iv~lLl~~ga--~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~  168 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGA--DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVE  168 (471)
T ss_pred             HHcCCcHHHHHHHHHcCC--CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHH
Confidence            9999 5999999998765  78899999999999999  566899999999999999999999999999998876  689


Q ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 048601          281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA  360 (418)
Q Consensus       281 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  360 (418)
                      ++++|+++|++++..+..|.||||.|+...                   .++.++++.|+++|++++.+|..|+||||+|
T Consensus       169 iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~-------------------~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~A  229 (471)
T PHA03095        169 LLRLLIDAGADVYAVDDRFRSLLHHHLQSF-------------------KPRARIVRELIRAGCDPAATDMLGNTPLHSM  229 (471)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHHC-------------------CCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            999999999999999999999999987642                   2345566779999999999999999999999


Q ss_pred             HHcCCH--HHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          361 AIKGHK--HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       361 ~~~g~~--~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      +..|+.  .+++.|++.|++++.+|..|+||||+|+..|+.+++++|+  +.|++++
T Consensus       230 a~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL--~~gad~n  284 (471)
T PHA03095        230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI--ALGADIN  284 (471)
T ss_pred             HhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH--HcCCCCc
Confidence            999974  6889999999999999999999999999999999999999  5677765

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.4e-39  Score=283.41  Aligned_cols=210  Identities=21%  Similarity=0.278  Sum_probs=188.1

Q ss_pred             hCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 048601          171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAK  250 (418)
Q Consensus       171 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~  250 (418)
                      .++.+++++|+++|++  .    .|.+|.||||+|+..|+.+++++|++.+.  +++..  ++.||||+|+..|+.++++
T Consensus         9 ~~~~~~~~~Lis~~a~--~----~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga--~~n~~--d~~TpLh~Aa~~g~~eiV~   78 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--K----ADVHGHSALYYAIADNNVRLVCTLLNAGA--LKNLL--ENEFPLHQAATLEDTKIVK   78 (284)
T ss_pred             cCHHHHHHHHHhCCCC--C----CCCCCCcHHHHHHHcCCHHHHHHHHHCcC--CCcCC--CCCCHHHHHHHCCCHHHHH
Confidence            5789999999999874  2    78899999999999999999999998765  44444  4789999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC-CHHHHHHHcCCHHHHHHHhcCchHHHHHH
Q 048601          251 VLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGR-SCFDVARDKGHIEVLEVLQRGEAVLTAAR  329 (418)
Q Consensus       251 ~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~l~~~~~~~~a~~  329 (418)
                      +|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|. ||||+|+..|+.+++++            
T Consensus        79 lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~------------  146 (284)
T PHA02791         79 ILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY------------  146 (284)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHH------------
Confidence            99999999999999999999999999999999999999999999888884 89999999888887777            


Q ss_pred             cCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH-hHHHHhcCCcceeehhhh
Q 048601          330 RGELEGLESLLDKGASTNYCD-QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP-LHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       330 ~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~-l~~A~~~g~~~~v~~Ll~  407 (418)
                               |++++.+.  .+ ..|.||||+|+.+|+.++|++|+++|++++.+|..|.|| ||+|+.+|+.++|++|+ 
T Consensus       147 ---------LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl-  214 (284)
T PHA02791        147 ---------FLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALF-  214 (284)
T ss_pred             ---------HHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH-
Confidence                     66665432  22 248999999999999999999999999999999999987 99999999999999999 


Q ss_pred             ccCCcccc
Q 048601          408 KQWGTMVS  415 (418)
Q Consensus       408 ~~~g~~~~  415 (418)
                       .+|++++
T Consensus       215 -~~Ga~in  221 (284)
T PHA02791        215 -KYDINIY  221 (284)
T ss_pred             -HCCCCCc
Confidence             6677775

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=302.96  Aligned_cols=274  Identities=26%  Similarity=0.355  Sum_probs=146.1

Q ss_pred             cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601          123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL  202 (418)
Q Consensus       123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L  202 (418)
                      .|+++||+|+.....+.|++|++.|++.  ...+..+.+++|+|+.  .|+.++++.|+++|++++.    .|+.|.|||
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~gad~--~~~n~~~~aplh~A~~--~~~~s~L~~Ll~~~~dvnl----~de~~~TpL  158 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSYGADT--PLRNLNKNAPLHLAAD--SGNYSCLKLLLDYGADVNL----EDENGFTPL  158 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhcCCCC--ChhhhhccCchhhccc--cchHHHHHHHHHhcCCccc----cccCCCchh
Confidence            3455555555555555555555555543  2234445555555555  4555555555555555555    555555555


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCCCCccHHHHHHHcC
Q 048601          203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLE-----SGADKEAKGKDGKTSLHNAAANG  277 (418)
Q Consensus       203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~g  277 (418)
                      |.|+..++.|..+.|++.+.  ++...|.+|++|+|.|+++|..++.+.++.     .+..+|..+..+.||||.|+..|
T Consensus       159 h~A~~~~~~E~~k~Li~~~a--~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g  236 (929)
T KOG0510|consen  159 HLAARKNKVEAKKELINKGA--DPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGG  236 (929)
T ss_pred             hHHHhcChHHHHHHHHhcCC--CCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcC
Confidence            55555555554455554333  444455555555555555555555555554     34445555555555555555555


Q ss_pred             CHHHHHHHHHcCCC---------------CCccCCCCCCHHHHHHHcCCHHHHHHHhc------------CchHHHHHHc
Q 048601          278 DRRMVEMLIEMGAD---------------PTIKDDRGRSCFDVARDKGHIEVLEVLQR------------GEAVLTAARR  330 (418)
Q Consensus       278 ~~~~v~~Ll~~g~~---------------~~~~~~~g~t~l~~A~~~~~~~~~~~l~~------------~~~~~~a~~~  330 (418)
                      ++++++.+|+.|+.               ++..|.+|.||||+|+..|+.+.++.|+.            ..+++.|+..
T Consensus       237 ~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~y  316 (929)
T KOG0510|consen  237 DIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIY  316 (929)
T ss_pred             CHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHc
Confidence            55555555555432               12234555555555555555555555532            2245555555


Q ss_pred             CCHHHHHHHHh-CC-CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCcHhHHHHhcCCcceeehh
Q 048601          331 GELEGLESLLD-KG-ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE---CQDNEGHAPLHLAVEGGRVEPLLFI  405 (418)
Q Consensus       331 g~~~~~~~Ll~-~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---~~d~~g~t~l~~A~~~g~~~~v~~L  405 (418)
                      |++++++.|++ .| ...|..|..|.||||.|+..||..++++|+.+||+..   ..|+.|.||||+|+..|+..+|+.|
T Consensus       317 g~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~L  396 (929)
T KOG0510|consen  317 GRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKL  396 (929)
T ss_pred             ccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHH
Confidence            55555555555 22 2244455555555555555555555555555555544   3355555555555555555555555


Q ss_pred             h
Q 048601          406 W  406 (418)
Q Consensus       406 l  406 (418)
                      +
T Consensus       397 i  397 (929)
T KOG0510|consen  397 I  397 (929)
T ss_pred             H
Confidence            5

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=307.79  Aligned_cols=266  Identities=18%  Similarity=0.204  Sum_probs=182.3

Q ss_pred             chHHHHHHHH--CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHH---hhCCHHHHHHHHHcCCCCcccccccCCCC
Q 048601          124 GPFLLRHAVS--NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATEL---AANSEDMVSLLLRAGLSIEIDERVKTKDG  198 (418)
Q Consensus       124 g~~~L~~A~~--~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  198 (418)
                      |.|+++.+..  .++.++|++|+++|++++.  .+..+.|||+.++..   ..+..+++++|+++|++++.    ++..|
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~--~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~----~d~~G  109 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNG--LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK----KNSDG  109 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCC--CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC----CCCCc
Confidence            4455443333  3356667777766666532  335566666665541   12446667777777766666    66666


Q ss_pred             chHHHHHHHcC---CHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCCC-CCCccHHH
Q 048601          199 WSELHVAAAFG---RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS---IGCAKVLLESGADKEAKG-KDGKTSLH  271 (418)
Q Consensus       199 ~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~-~~g~t~L~  271 (418)
                      .||||+|+.++   +.+++++|++.+.  +++..|..|.||||+|++.++   .+++++|+++|++++..+ ..|.||||
T Consensus       110 ~TpLh~a~~~~~~~~~~iv~~Ll~~Ga--dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh  187 (489)
T PHA02798        110 ETPLYCLLSNGYINNLEILLFMIENGA--DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH  187 (489)
T ss_pred             CcHHHHHHHcCCcChHHHHHHHHHcCC--CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHH
Confidence            67777666654   5666666666544  556666666777776666665   666777776666666653 35666666


Q ss_pred             HHHHc----CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCC
Q 048601          272 NAAAN----GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN  347 (418)
Q Consensus       272 ~A~~~----g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~  347 (418)
                      .++..    ++.+++++|+++|++++..+..|.++++....              .+..+...++.+++++|+. ++++|
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~--------------~l~~~~~~~~~~i~~~l~~-~~dvN  252 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN--------------SLLYDNKRFKKNILDFIFS-YIDIN  252 (489)
T ss_pred             HHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH--------------HHHhhcccchHHHHHHHHh-cCCCC
Confidence            66543    35666777777776666666666665541100              0112344566777777665 69999


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCc
Q 048601          348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGT  412 (418)
Q Consensus       348 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~  412 (418)
                      .+|..|+||||+|+.+|+.+++++|+++|||++.+|..|+|||++|+++|+.++++.|++.++..
T Consensus       253 ~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        253 QVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             CcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999655443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.4e-39  Score=301.07  Aligned_cols=295  Identities=26%  Similarity=0.307  Sum_probs=260.3

Q ss_pred             CchHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhH
Q 048601           84 PSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLY  163 (418)
Q Consensus        84 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l  163 (418)
                      ..+.-+..++.+...+.|+.+++.-.+      ..-.+..+.+|+|+|+..|+.++++.|++++.++  +..+..+.||+
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~gad------~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv--nl~de~~~TpL  158 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSYGAD------TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADV--NLEDENGFTPL  158 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhcCCC------CChhhhhccCchhhccccchHHHHHHHHHhcCCc--cccccCCCchh
Confidence            344556666666777777777655332      2224556889999999999999999999999776  44678899999


Q ss_pred             HHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcc---cCCCCccCCCCCCcHHHHH
Q 048601          164 RVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK---EYESLDCRDKEGRTPLHLA  240 (418)
Q Consensus       164 ~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~~~~t~L~~A  240 (418)
                      |.|+.  .++.|..+.|++.|+++..    .+.+|.+|+|.|++.|..+..+.++.+.   ....++..+..+.||||.|
T Consensus       159 h~A~~--~~~~E~~k~Li~~~a~~~K----~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlA  232 (929)
T KOG0510|consen  159 HLAAR--KNKVEAKKELINKGADPCK----SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLA  232 (929)
T ss_pred             hHHHh--cChHHHHHHHHhcCCCCCc----ccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhh
Confidence            99999  8999999999999999887    8899999999999999999999999833   3346788899999999999


Q ss_pred             HHcCCHHHHHHHHHcCCC---------------CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Q 048601          241 VNKTSIGCAKVLLESGAD---------------KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV  305 (418)
Q Consensus       241 ~~~~~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  305 (418)
                      +..|+.++++.++++|..               ++..|.+|.||||+|++.|+.++++.|+..|++++.++.++.||||.
T Consensus       233 ve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~  312 (929)
T KOG0510|consen  233 VEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHF  312 (929)
T ss_pred             hhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHH
Confidence            999999999999998764               34578899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHhc--------------CchHHHHHHcCCHHHHHHHHhCCCCCC---cCCCCCCcHHHHHHHcCCHHH
Q 048601          306 ARDKGHIEVLEVLQR--------------GEAVLTAARRGELEGLESLLDKGASTN---YCDQYGLTPLHIAAIKGHKHV  368 (418)
Q Consensus       306 A~~~~~~~~~~~l~~--------------~~~~~~a~~~g~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~  368 (418)
                      |+..|+.+.++.|++              ..+++.|++.||..+++.|+.+|+..+   ..|.+|.||||.|+.+|+..+
T Consensus       313 AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~a  392 (929)
T KOG0510|consen  313 AAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSA  392 (929)
T ss_pred             HHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHH
Confidence            999999999999976              346889999999999999999999987   458999999999999999999


Q ss_pred             HHHHHHcCCCCCcCCCCCCcHhHH
Q 048601          369 VLLLIEFGADVECQDNEGHAPLHL  392 (418)
Q Consensus       369 v~~Ll~~ga~~~~~d~~g~t~l~~  392 (418)
                      |++|+.+|+++..+|+.|.+++++
T Consensus       393 v~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  393 VQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHcCCceeeccccccccccc
Confidence            999999999999999999999997

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-38  Score=299.82  Aligned_cols=225  Identities=27%  Similarity=0.353  Sum_probs=205.9

Q ss_pred             hhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHH
Q 048601          160 ESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL  239 (418)
Q Consensus       160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~  239 (418)
                      ++.|+.|+.  .|+.+++++|++.|++++.    .+..|.||||+|+..|+.+++++|++.+.  .++..+..+.||||+
T Consensus         3 ~~~L~~A~~--~g~~~iv~~Ll~~g~~~n~----~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~~~t~L~~   74 (413)
T PHA02875          3 QVALCDAIL--FGELDIARRLLDIGINPNF----EIYDGISPIKLAMKFRDSEAIKLLMKHGA--IPDVKYPDIESELHD   74 (413)
T ss_pred             chHHHHHHH--hCCHHHHHHHHHCCCCCCc----cCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CccccCCCcccHHHH
Confidence            467888988  8999999999999999987    88899999999999999999999998776  566777889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC-CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Q 048601          240 AVNKTSIGCAKVLLESGADKE-AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL  318 (418)
Q Consensus       240 A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  318 (418)
                      |+..|+.+++++|++.|+..+ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++ 
T Consensus        75 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~-  153 (413)
T PHA02875         75 AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL-  153 (413)
T ss_pred             HHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH-
Confidence            999999999999999998764 456789999999999999999999999999999999999999999998887776665 


Q ss_pred             hcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC-cHhHHHHhcC
Q 048601          319 QRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH-APLHLAVEGG  397 (418)
Q Consensus       319 ~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-t~l~~A~~~g  397 (418)
                                          |+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+++|+..|
T Consensus       154 --------------------Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        154 --------------------LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENN  213 (413)
T ss_pred             --------------------HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcC
Confidence                                8899999999999999999999999999999999999999999998874 8899999999


Q ss_pred             CcceeehhhhccCCcccc
Q 048601          398 RVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       398 ~~~~v~~Ll~~~~g~~~~  415 (418)
                      +.+++++|+  +.|++++
T Consensus       214 ~~~iv~~Ll--~~gad~n  229 (413)
T PHA02875        214 KIDIVRLFI--KRGADCN  229 (413)
T ss_pred             CHHHHHHHH--HCCcCcc
Confidence            999999999  5566654

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-38  Score=308.13  Aligned_cols=311  Identities=16%  Similarity=0.167  Sum_probs=232.6

Q ss_pred             CchHHHHHH---hccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHH----HHHHHhcchhhhhcCCh
Q 048601           84 PSDRFLIKA---TVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNA----VKSILKRQKMILAGLSS  156 (418)
Q Consensus        84 ~~~~~l~~a---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~----vk~Ll~~~~~~~~~~~~  156 (418)
                      .....|..|   +.+|+.+.++.++..-.+     .. ..+..|.||||+|+..|+.++    ++.|++.+...  +.  
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-----v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~--n~--  100 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTN-----PL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS--NI--  100 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-----cc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC--CC--
Confidence            345667775   445788888888754331     22 235679999999999998654    56677654322  11  


Q ss_pred             hhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHH--HcCCHHHHHHHHhcccCCCCccCC---C
Q 048601          157 AEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAA--AFGRTEEISSLVRMKEYESLDCRD---K  231 (418)
Q Consensus       157 ~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~---~  231 (418)
                      .+..++++.|+.  +|+.|++++|+++|++++.    ++..|.||||.|+  ..|+.+++++|++++.  +++..|   .
T Consensus       101 ~~~~~~~~~a~~--~~~~e~vk~Ll~~Gadin~----~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga--~vn~~d~~~~  172 (661)
T PHA02917        101 NDFNIFSYMKSK--NVDVDLIKVLVEHGFDLSV----KCENHRSVIENYVMTDDPVPEIIDLFIENGC--SVLYEDEDDE  172 (661)
T ss_pred             CCcchHHHHHhh--cCCHHHHHHHHHcCCCCCc----cCCCCccHHHHHHHccCCCHHHHHHHHHcCC--Cccccccccc
Confidence            223456677777  7899999999999999998    9999999999654  5789999999998876  454433   2


Q ss_pred             CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH--HHHHHHHH
Q 048601          232 EG-----------RTPLHLAVN-----------KTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR--RMVEMLIE  287 (418)
Q Consensus       232 ~~-----------~t~L~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~  287 (418)
                      .|           .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+.+|+.  ++|++|++
T Consensus       173 ~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        173 YGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence            23           599999986           4689999999999999999999999999999999985  79999975


Q ss_pred             cCCCCC----ccCCCCCCHHHHHHH-------c--CCHHHHHHHhcCch--------------------H----------
Q 048601          288 MGADPT----IKDDRGRSCFDVARD-------K--GHIEVLEVLQRGEA--------------------V----------  324 (418)
Q Consensus       288 ~g~~~~----~~~~~g~t~l~~A~~-------~--~~~~~~~~l~~~~~--------------------~----------  324 (418)
                       |++.+    ..+..|.+|++.|+.       +  .+.++++.|++.++                    +          
T Consensus       253 -g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (661)
T PHA02917        253 -GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVL  331 (661)
T ss_pred             -CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHH
Confidence             88765    355677788888883       1  16788888865442                    0          


Q ss_pred             ----HHHHHcCC--HHHHHHHHhCCCCCCcC------------------------------CCCCCcHHHHHHHcC----
Q 048601          325 ----LTAARRGE--LEGLESLLDKGASTNYC------------------------------DQYGLTPLHIAAIKG----  364 (418)
Q Consensus       325 ----~~a~~~g~--~~~~~~Ll~~g~~~~~~------------------------------~~~g~t~L~~A~~~g----  364 (418)
                          ..++..|.  .++++.|+++|+++|.+                              +..|.||||.|++.+    
T Consensus       332 ~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~  411 (661)
T PHA02917        332 QHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCY  411 (661)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccch
Confidence                11334555  45888888887776543                              223788888886432    


Q ss_pred             -------------------CHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          365 -------------------HKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       365 -------------------~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                                         ..+++++|+++|+|++.+|..|+||||+|+..++.+++++|+  ..|++++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll--~~GAdin  479 (661)
T PHA02917        412 NFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLL--ESGSDVN  479 (661)
T ss_pred             hhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH--HCcCCCC
Confidence                               356778888999999888888999999998888888888888  5666665

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-38  Score=306.91  Aligned_cols=248  Identities=29%  Similarity=0.416  Sum_probs=225.5

Q ss_pred             CCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHH-----HHHcC
Q 048601          135 GDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHV-----AAAFG  209 (418)
Q Consensus       135 g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~-----A~~~g  209 (418)
                      ...++++++++.+...  ......+.+|+|.|+.  .|+.+++++|++.|++++.    .+..+.||||+     |+..|
T Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~~t~L~~A~~--~~~~~ivk~Ll~~g~~~~~----~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         13 IKVKNIKYIIMEDDLN--DYSYKKPVLPLYLAKE--ARNIDVVKILLDNGADINS----STKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             HHHHHHHHHHhcCccc--hhhhcccchhhhhhhc--cCCHHHHHHHHHcCCCCCC----ccccCcCHHHHHHHHHHHhhc
Confidence            3456778888654222  2345678899999999  8999999999999999987    88889999999     99999


Q ss_pred             CHHHHHHHHhcccCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC--CHHHHHHH
Q 048601          210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAV--NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG--DRRMVEML  285 (418)
Q Consensus       210 ~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~L  285 (418)
                      +.+++++|++.+.  +++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|
T Consensus        85 ~~~iv~~Ll~~ga--~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~L  162 (480)
T PHA03100         85 VKEIVKLLLEYGA--NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLL  162 (480)
T ss_pred             hHHHHHHHHHCCC--CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHH
Confidence            9999999998766  66889999999999999  999999999999999999999999999999999999  99999999


Q ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC------CcHHHH
Q 048601          286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG------LTPLHI  359 (418)
Q Consensus       286 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g------~t~L~~  359 (418)
                      +++|++++.++..|.||||+|+..|+.+++++                     |+++|++++..+..|      .||||+
T Consensus       163 l~~g~din~~d~~g~tpL~~A~~~~~~~iv~~---------------------Ll~~ga~~~~~~~~~~~~~~~~t~l~~  221 (480)
T PHA03100        163 IDKGVDINAKNRYGYTPLHIAVEKGNIDVIKF---------------------LLDNGADINAGDIETLLFTIFETPLHI  221 (480)
T ss_pred             HHCCCCcccccCCCCCHHHHHHHhCCHHHHHH---------------------HHHcCCCccCCCCCCCcHHHHHhHHHH
Confidence            99999999999999999999998887776665                     899999999999888      899999


Q ss_pred             HHHcCC--HHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          360 AAIKGH--KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       360 A~~~g~--~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      |+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+  +.|++++
T Consensus       222 a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll--~~gad~n  277 (480)
T PHA03100        222 AACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL--DLGANPN  277 (480)
T ss_pred             HHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH--HcCCCCC
Confidence            999999  99999999999999999999999999999999999999999  5666665

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-39  Score=247.99  Aligned_cols=179  Identities=38%  Similarity=0.593  Sum_probs=165.4

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHN  272 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~  272 (418)
                      .|.+|+||||+|+..|+.+++.+|+. ..+..+|..|..|+||||+||..|+.++|+-|+.+ |+++|..+..|.|+|||
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHy  112 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHY  112 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehh
Confidence            44489999999999999999999997 44567888899999999999999999999999998 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601          273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY  352 (418)
Q Consensus       273 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~  352 (418)
                      |+..|..+|+++|+++|+.++.+|..|.||||-|+..|..+++++                     |+..|+.+|.+|..
T Consensus       113 AagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~---------------------Li~~~a~~n~qDk~  171 (226)
T KOG4412|consen  113 AAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEY---------------------LISQGAPLNTQDKY  171 (226)
T ss_pred             hhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHH---------------------HHhcCCCCCccccc
Confidence            999999999999999999999999999999998888777665555                     89999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHh
Q 048601          353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE  395 (418)
Q Consensus       353 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  395 (418)
                      |+||||.|...||.++..+|+++||+++..|++| ||+..|.-
T Consensus       172 G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  172 GFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             CccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            9999999999999999999999999999999999 99877653

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=295.49  Aligned_cols=289  Identities=17%  Similarity=0.118  Sum_probs=228.0

Q ss_pred             ecccchHHHHHHHHCC---CHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCC
Q 048601          120 IAFVGPFLLRHAVSNG---DFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTK  196 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g---~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  196 (418)
                      .+..|.||||+|+..|   +.++|++|+++|+++..  .+..|.||||+|+...+++.|++++|++.|++.+.+.  .+.
T Consensus        37 kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~--kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~--~~~  112 (672)
T PHA02730         37 IDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC--RNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL--TSN  112 (672)
T ss_pred             cCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc--cCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc--ccc
Confidence            3456999999999997   59999999999999854  5678999999998833348999999999977653311  666


Q ss_pred             CCchHHHHHHH--cCCHHHHHHHHhcccCCCCccC----C-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-------C
Q 048601          197 DGWSELHVAAA--FGRTEEISSLVRMKEYESLDCR----D-KEGRTPLHLAVNKTSIGCAKVLLESGADKEA-------K  262 (418)
Q Consensus       197 ~~~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~----~-~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-------~  262 (418)
                      .+.+||+.++.  +++.+++++|+..++ .+++..    + ..|.+|+++|...+++++|++|+++|++++.       .
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~-~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~  191 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKR-IRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMY  191 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcC-CChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccc
Confidence            68899999988  999999999996333 233332    1 2789999999999999999999999999851       2


Q ss_pred             CCCC-ccHHHHHH------HcCCHHHHHHHHHcCCCCCccCCCCCCHHHH--HHHcCCHHHHHHHhc-------------
Q 048601          263 GKDG-KTSLHNAA------ANGDRRMVEMLIEMGADPTIKDDRGRSCFDV--ARDKGHIEVLEVLQR-------------  320 (418)
Q Consensus       263 ~~~g-~t~L~~A~------~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~--A~~~~~~~~~~~l~~-------------  320 (418)
                      +..+ .|.||+++      .+++.|++++|+++|+++|.+|..|+||||+  |...|+.|++++|++             
T Consensus       192 ~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~  271 (672)
T PHA02730        192 DSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQ  271 (672)
T ss_pred             cCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccc
Confidence            3333 35555443      5578999999999999999999999999995  555677999999976             


Q ss_pred             -------------------Cch-----------------------------------------------------HHHHH
Q 048601          321 -------------------GEA-----------------------------------------------------VLTAA  328 (418)
Q Consensus       321 -------------------~~~-----------------------------------------------------~~~a~  328 (418)
                                         ++.                                                     ++...
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~  351 (672)
T PHA02730        272 PYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYL  351 (672)
T ss_pred             hhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHH
Confidence                               111                                                     11112


Q ss_pred             Hc---CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC----HHHHHHHHHcCC--CCCcCCCCCCcHhHH---HHhc
Q 048601          329 RR---GELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGH----KHVVLLLIEFGA--DVECQDNEGHAPLHL---AVEG  396 (418)
Q Consensus       329 ~~---g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga--~~~~~d~~g~t~l~~---A~~~  396 (418)
                      ..   .+.+++++|+++|+++|.. ..|.||||+|+..++    .+++++|+++|+  +++.+|..|+|||+.   |..+
T Consensus       352 ~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~  430 (672)
T PHA02730        352 HYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFN  430 (672)
T ss_pred             hcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhc
Confidence            22   4689999999999999985 789999999998875    899999999998  699999999999984   4333


Q ss_pred             C---------CcceeehhhhccCCccccc
Q 048601          397 G---------RVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       397 g---------~~~~v~~Ll~~~~g~~~~~  416 (418)
                      +         .++++++|+  ..|+++|.
T Consensus       431 n~~~~~~e~~~~~ivk~LI--s~GADINa  457 (672)
T PHA02730        431 NCGYHCYETILIDVFDILS--KYMDDIDM  457 (672)
T ss_pred             cccccccchhHHHHHHHHH--hcccchhc
Confidence            2         224589999  67777663

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-37  Score=293.66  Aligned_cols=320  Identities=12%  Similarity=0.048  Sum_probs=199.7

Q ss_pred             chHHHHHHhccC---CccccccccccCCCCCccceeeeecccchHHHHHHHHCC--CHHHHHHHHhcchhhhhcCChhhh
Q 048601           85 SDRFLIKATVFG---SADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNG--DFNAVKSILKRQKMILAGLSSAEA  159 (418)
Q Consensus        85 ~~~~l~~a~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g--~~~~vk~Ll~~~~~~~~~~~~~~~  159 (418)
                      ..+.|..|+..+   +.+.++.|++.-.+     ++. .+..|.||||+|+..|  +.|+|++|++.|+.......+..+
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~GAd-----in~-kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSRGVE-----RLC-RNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhCCCC-----Ccc-cCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            356788888886   46777777744221     222 3567999999999966  799999999986543222122234


Q ss_pred             hhhHHHHHHHhhCCHHHHHHHHH-cCCCCcccccccC-CCCchHHHHHHHcCCHHHHHHHHhcccCCC-----CccCCCC
Q 048601          160 ESLYRVATELAANSEDMVSLLLR-AGLSIEIDERVKT-KDGWSELHVAAAFGRTEEISSLVRMKEYES-----LDCRDKE  232 (418)
Q Consensus       160 ~~~l~~a~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~~  232 (418)
                      .++++.+++..+++.|++++|++ .+++++...+..+ ..|.+|+++|...++.|+|++|++.++...     .+..+..
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            45555555544556666666664 4455544211111 145556666666666666666665544221     0111222


Q ss_pred             CC-cHHHHH------HHcCCHHHHHHHHHcCCCCCCCCCCCccHHH----------------------------------
Q 048601          233 GR-TPLHLA------VNKTSIGCAKVLLESGADKEAKGKDGKTSLH----------------------------------  271 (418)
Q Consensus       233 ~~-t~L~~A------~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~----------------------------------  271 (418)
                      .+ |.||++      ..+++.|++++|+++|++++.+|..|.||||                                  
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~  274 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYI  274 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhh
Confidence            22 222211      2233445555555555555555555555554                                  


Q ss_pred             --------------------------------------------------------------------------HHHHcC
Q 048601          272 --------------------------------------------------------------------------NAAANG  277 (418)
Q Consensus       272 --------------------------------------------------------------------------~A~~~g  277 (418)
                                                                                                .-...+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~  354 (672)
T PHA02730        275 RGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYG  354 (672)
T ss_pred             hhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcC
Confidence                                                                                      333322


Q ss_pred             ---CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHhcCc--------------hHH---HHHHcC--
Q 048601          278 ---DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH----IEVLEVLQRGE--------------AVL---TAARRG--  331 (418)
Q Consensus       278 ---~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~l~~~~--------------~~~---~a~~~g--  331 (418)
                         +.+++++|+++||+++.. ..|.||||+|+..++    .+++++|++++              +++   .|...+  
T Consensus       355 ~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~  433 (672)
T PHA02730        355 DMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCG  433 (672)
T ss_pred             CcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccc
Confidence               355566666666666654 678899998887774    79999997543              233   222222  


Q ss_pred             -------CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCcHhHHHHh--cCCcce
Q 048601          332 -------ELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN-EGHAPLHLAVE--GGRVEP  401 (418)
Q Consensus       332 -------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~--~g~~~~  401 (418)
                             ..+++++|+++|+++|.+|..|+||||+|+..++.+++++|+++||+++.+|. .|.|||++|+.  +|+.++
T Consensus       434 ~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eI  513 (672)
T PHA02730        434 YHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKL  513 (672)
T ss_pred             ccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHH
Confidence                   23568999999999999999999999999999999999999999999999886 58999999987  478899


Q ss_pred             eehhhhccCC
Q 048601          402 LLFIWLKQWG  411 (418)
Q Consensus       402 v~~Ll~~~~g  411 (418)
                      +++|+++++.
T Consensus       514 v~~LLs~ga~  523 (672)
T PHA02730        514 VDLLLSYHPT  523 (672)
T ss_pred             HHHHHHcCCC
Confidence            9999855544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.5e-38  Score=276.01  Aligned_cols=220  Identities=27%  Similarity=0.337  Sum_probs=181.8

Q ss_pred             HHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcc-hh------hhhcCChhhhhh
Q 048601           89 LIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQ-KM------ILAGLSSAEAES  161 (418)
Q Consensus        89 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~-~~------~~~~~~~~~~~~  161 (418)
                      ...|+..|....+..++.+.+.....+. ......|.|||..|+++|+.++|++|+++. ++      +..+-...++.+
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l-~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegap   86 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISL-IGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAP   86 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHH-hccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCc
Confidence            3366666666666666555443111111 122345889999999999999999999842 22      111222345678


Q ss_pred             hHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHH
Q 048601          162 LYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV  241 (418)
Q Consensus       162 ~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~  241 (418)
                      |+-.|++  .|+.|+|+.|+++|+++|.    ....+.|||-.||.-|++|+|+||++++.  +++..|+.|.|.||+||
T Consensus        87 pLWaAsa--AGHl~vVk~L~~~ga~VN~----tT~TNStPLraACfDG~leivKyLvE~ga--d~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   87 PLWAASA--AGHLEVVKLLLRRGASVND----TTRTNSTPLRAACFDGHLEIVKYLVEHGA--DPEIANRHGHTCLMIAC  158 (615)
T ss_pred             hhhHHhc--cCcHHHHHHHHHhcCcccc----ccccCCccHHHHHhcchhHHHHHHHHcCC--CCcccccCCCeeEEeee
Confidence            8877777  8999999999999999987    77778899999999999999999998776  88899999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Q 048601          242 NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL  318 (418)
Q Consensus       242 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  318 (418)
                      ..|+.+|+++|++.|+|+|.++..|.|+||.|+..|+.+++++|+.+|+.+.. |..|.|||..|+..|+.++|++|
T Consensus       159 ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             ccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999988764 56699999999999999999999

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=293.06  Aligned_cols=272  Identities=19%  Similarity=0.244  Sum_probs=218.4

Q ss_pred             HHHHHHCCCHHHHHHHHhcchh-hh-hcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHH
Q 048601          128 LRHAVSNGDFNAVKSILKRQKM-IL-AGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVA  205 (418)
Q Consensus       128 L~~A~~~g~~~~vk~Ll~~~~~-~~-~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A  205 (418)
                      |..++...+.+-+...++.-.. .. .......+.+|||.|+.  .|+.++|++|++.|++++.    .+..|.||||+|
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~--~g~~e~vk~Ll~~gadvn~----~d~~g~TpLh~A   77 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVE--ARNLDVVKSLLTRGHNVNQ----PDHRDLTPLHII   77 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHH--cCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHH
Confidence            4456666665444444433111 00 01122356789999999  8999999999999999988    899999999999


Q ss_pred             HHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc--CCHHHHH
Q 048601          206 AAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN--GDRRMVE  283 (418)
Q Consensus       206 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~  283 (418)
                      +..|+.+++++|++.......    ..+.+|++.|+..++.+++++|+..+.+......  ...+..+...  .+.++++
T Consensus        78 ~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~  151 (477)
T PHA02878         78 CKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITK  151 (477)
T ss_pred             HHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHH
Confidence            999999999999986552222    5678999999999999999999988654322111  1111111112  2356999


Q ss_pred             HHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHhcC------------chHHHHHHcCCHHHHHHHHhCCCCCCcCC
Q 048601          284 MLIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRG------------EAVLTAARRGELEGLESLLDKGASTNYCD  350 (418)
Q Consensus       284 ~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~l~~~------------~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~  350 (418)
                      +|+++|++++..+.. |.||||+|+..|+.+++++|.+.            ++++.|+..|+.+++++|+++|++++.+|
T Consensus       152 ~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d  231 (477)
T PHA02878        152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD  231 (477)
T ss_pred             HHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Confidence            999999999999998 99999999999999999999753            46999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcCCC-CCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          351 QYGLTPLHIAAIK-GHKHVVLLLIEFGADVECQDN-EGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       351 ~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      ..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+  +.|++++
T Consensus       232 ~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll--~~gadin  294 (477)
T PHA02878        232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLL--EYGADIN  294 (477)
T ss_pred             CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHH--HCCCCCC
Confidence            9999999999976 799999999999999999886 799999999  56789999999  6677765

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=295.86  Aligned_cols=277  Identities=19%  Similarity=0.191  Sum_probs=176.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCC-------
Q 048601          126 FLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDG-------  198 (418)
Q Consensus       126 ~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~-------  198 (418)
                      ++++.|+..|+.++|++|+++|++++.  .+..+.|+++.+++...|+.|++++|+++|++++... ..+..|       
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~--~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d-~~~~~g~~~~~~~  181 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSV--KCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED-EDDEYGYAYDDYQ  181 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCc--cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc-ccccccccccccc
Confidence            455666666666666666666666532  3445666666554433566666666666666665311 011122       


Q ss_pred             ----chHHHHHHH-----------cCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCC-
Q 048601          199 ----WSELHVAAA-----------FGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSI--GCAKVLLESGADKE-  260 (418)
Q Consensus       199 ----~t~L~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~--~~v~~Ll~~~~~~~-  260 (418)
                          .||||+|+.           .++.+++++|++.+.  +++.+|..|.||||+|+.+|+.  ++|++|++ |++.+ 
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga--dvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI--KPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC--CcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence                366666654           346666666665554  5666666666666666666663  56666653 55443 


Q ss_pred             ---CCCCCCccHHHHHHH--------------------------------------------------------------
Q 048601          261 ---AKGKDGKTSLHNAAA--------------------------------------------------------------  275 (418)
Q Consensus       261 ---~~~~~g~t~L~~A~~--------------------------------------------------------------  275 (418)
                         ..+..|.+|+++|+.                                                              
T Consensus       259 ~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  338 (661)
T PHA02917        259 YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEY  338 (661)
T ss_pred             cccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHH
Confidence               233344455555542                                                              


Q ss_pred             --cCC--HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhc-------------CchHHHHHHc--------
Q 048601          276 --NGD--RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR-------------GEAVLTAARR--------  330 (418)
Q Consensus       276 --~g~--~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~-------------~~~~~~a~~~--------  330 (418)
                        .|.  .+++++|+++|++++.++..|.++.    ...+.++++.|+.             .+|++.|++.        
T Consensus       339 ~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~  414 (661)
T PHA02917        339 MTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFY  414 (661)
T ss_pred             HHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhh
Confidence              222  2344555555554444444443321    1223333333331             1245555432        


Q ss_pred             ---------------CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHh
Q 048601          331 ---------------GELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE  395 (418)
Q Consensus       331 ---------------g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  395 (418)
                                     +..++++.|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        415 TYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             hhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence                           24678899999999999999999999999999999999999999999999999999999999995


Q ss_pred             -cCCcceeehhhhccCCc
Q 048601          396 -GGRVEPLLFIWLKQWGT  412 (418)
Q Consensus       396 -~g~~~~v~~Ll~~~~g~  412 (418)
                       +++.+++++|+.+...+
T Consensus       495 ~~~~~~iv~~LL~~ga~i  512 (661)
T PHA02917        495 ESRNIELLKMLLCHKPTL  512 (661)
T ss_pred             hCCCHHHHHHHHHcCCCh
Confidence             78999999999555443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-37  Score=236.48  Aligned_cols=210  Identities=29%  Similarity=0.383  Sum_probs=187.5

Q ss_pred             chHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHH-cCCCCcccccccCCCCchHH
Q 048601          124 GPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLR-AGLSIEIDERVKTKDGWSEL  202 (418)
Q Consensus       124 g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~t~L  202 (418)
                      +.++.+.+|......-|+.+++..+..+...++.++++|||+|+.  -|+.+++.+|++ .+..++.    +|..|+|||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S--~g~~eiv~fLlsq~nv~~dd----kDdaGWtPl   76 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACS--FGHVEIVYFLLSQPNVKPDD----KDDAGWTPL   76 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeee--cCchhHHHHHHhcCCCCCCC----ccccCCchh
Confidence            345677788888888889999887766666677799999999999  799999999995 4455555    899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHH
Q 048601          203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV  282 (418)
Q Consensus       203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  282 (418)
                      |.|+..|+.++|+.|+... +.+++..+..|+|+||||+..|+++|+++|+++|+.++.+|..|.||||.|+..|+++++
T Consensus        77 hia~s~g~~evVk~Ll~r~-~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvi  155 (226)
T KOG4412|consen   77 HIAASNGNDEVVKELLNRS-GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVI  155 (226)
T ss_pred             hhhhhcCcHHHHHHHhcCC-CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhH
Confidence            9999999999999999864 468999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q 048601          283 EMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAI  362 (418)
Q Consensus       283 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  362 (418)
                      ++|+..|+.+|.+|.+|+||||.|...|+.++...                     |+++|++++..|+.| ||+..|+-
T Consensus       156 e~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~l---------------------LV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  156 EYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVL---------------------LVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHHhcCCCCCcccccCccHHHHHHhccCchHHHH---------------------HHHhccceeeccccC-chHHHHHH
Confidence            99999999999999999999999988777776655                     899999999999988 99887764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.2e-37  Score=305.19  Aligned_cols=327  Identities=30%  Similarity=0.435  Sum_probs=222.0

Q ss_pred             eeEEEEecCCCCCCCCCCCCCchHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHH
Q 048601           64 TTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSI  143 (418)
Q Consensus        64 ~~i~~~l~~~~~~p~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~L  143 (418)
                      ......++++.++..-  ....-.-+..++..|+.+.+..++.....-      .-.+..|.||+|.|+..+..+.+++|
T Consensus       223 ~~~eLll~~gadv~a~--d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~------~~~~vr~~tplh~AA~~~~~e~~~~l  294 (1143)
T KOG4177|consen  223 KVVELLLKHGADVSAK--DESGLTPLHVAAFMGHLDIVKLLLQHGASV------NVSTVRGETPLHMAARAGQVEVCKLL  294 (1143)
T ss_pred             ceeeeeeeccCcCCcc--cccCccHHHHHHhccchhHHHHHHhccccc------CcccccccCcchhhhccchhhhHhhh
Confidence            4455666666554221  223344577888888988888887665431      12344588899999999999999999


Q ss_pred             HhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhccc-
Q 048601          144 LKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKE-  222 (418)
Q Consensus       144 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-  222 (418)
                      +++|+++..  ......+++++|..  .|..++++++++.++.++.    .+..|.+|+|+++..++.++..++.+... 
T Consensus       295 l~~ga~~~~--~~~~~kt~l~~a~~--~g~~~i~~~~l~~~~~~~a----ar~~g~t~lHlaa~~~~~~~~~~l~~~~~~  366 (1143)
T KOG4177|consen  295 LQNGADVLA--KARDDQTPLHIASR--LGHEEIVHLLLQAGATPNA----ARTAGYTPLHLAAKEGQVEVAGALLEHGAQ  366 (1143)
T ss_pred             hccCccccc--ccccccChhhhhcc--cchHHHHHHHhhccCCccc----cCcCCcccccHhhhhhhHHHHHHhhccccc
Confidence            988887633  34566777777777  6677778888777777666    55555555555555555554444443221 


Q ss_pred             ------------------------------CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHH
Q 048601          223 ------------------------------YESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHN  272 (418)
Q Consensus       223 ------------------------------~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  272 (418)
                                                    +.+.+.++..|.||||.|+..++..+++.++++|++++..+..|.||+|+
T Consensus       367 ~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhv  446 (1143)
T KOG4177|consen  367 RRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHV  446 (1143)
T ss_pred             cCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhh
Confidence                                          11355556666666666666666666666666666666677777788888


Q ss_pred             HHHcC-CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC------------------------------
Q 048601          273 AAANG-DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------------------------------  321 (418)
Q Consensus       273 A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~------------------------------  321 (418)
                      |+..| ..+++..+++.|++++.....|.||||+|+..|+.+++..+.+.                              
T Consensus       447 aa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  447 AAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             hhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHH
Confidence            88777 77777788888888888888888888888888888888887432                              


Q ss_pred             ---------------chHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Q 048601          322 ---------------EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG  386 (418)
Q Consensus       322 ---------------~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  386 (418)
                                     .+++.|+.+|++++|++|+++|++++.++..|+||||.||..|+.+|+.+|+++||++|..|.+|
T Consensus       527 ~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  527 LEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDG  606 (1143)
T ss_pred             hhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccC
Confidence                           23566666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcHhHHHHhcCCcceeehhh
Q 048601          387 HAPLHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       387 ~t~l~~A~~~g~~~~v~~Ll  406 (418)
                      .|||++|++.|+.+++++|+
T Consensus       607 ~TpL~iA~~lg~~~~~k~l~  626 (1143)
T KOG4177|consen  607 FTPLHIAVRLGYLSVVKLLK  626 (1143)
T ss_pred             cchhHHHHHhcccchhhHHH
Confidence            66666666666666666665

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-35  Score=284.68  Aligned_cols=278  Identities=18%  Similarity=0.203  Sum_probs=222.9

Q ss_pred             CceeEEEEecCCCCCCCCCCCCCchHHHHH-HhccC-CccccccccccCCCCCccceeeeecccchHHHHHHHHCC----
Q 048601           62 AQTTLQIILKPQSQIPPTFPRSPSDRFLIK-ATVFG-SADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNG----  135 (418)
Q Consensus        62 ~~~~i~~~l~~~~~~p~~~~~~~~~~~l~~-a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g----  135 (418)
                      ....++.+++.+.++..  . ......+.. ++..+ +.+.++.|++.-. .    ++.+  ..+.||||.|+.++    
T Consensus        15 ~~~~v~~LL~~GadvN~--~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GA-d----vn~~--~~~~tpL~~a~~~~~~~~   84 (494)
T PHA02989         15 DKNALEFLLRTGFDVNE--E-YRGNSILLLYLKRKDVKIKIVKLLIDNGA-D----VNYK--GYIETPLCAVLRNREITS   84 (494)
T ss_pred             cHHHHHHHHHcCCCccc--c-cCCCCHHHHHHhcCCCChHHHHHHHHcCC-C----ccCC--CCCCCcHHHHHhccCcch
Confidence            34556677777776433  2 334455544 44443 5666766665432 2    2222  24689999998765    


Q ss_pred             --CHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHh-hCCHHHHHHHHHcCCCC-cccccccCCCCchHHHHHHHc--C
Q 048601          136 --DFNAVKSILKRQKMILAGLSSAEAESLYRVATELA-ANSEDMVSLLLRAGLSI-EIDERVKTKDGWSELHVAAAF--G  209 (418)
Q Consensus       136 --~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~t~L~~A~~~--g  209 (418)
                        +.++|++|+++|++++.  .+..|.||++.|+... .|+.|++++|+++|+++ +.    .+..|.||||+|+..  +
T Consensus        85 ~~~~~iv~~Ll~~Gadin~--~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~----~d~~g~tpLh~a~~~~~~  158 (494)
T PHA02989         85 NKIKKIVKLLLKFGADINL--KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV----KNSRGYNLLHMYLESFSV  158 (494)
T ss_pred             hhHHHHHHHHHHCCCCCCC--CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccc----cCCCCCCHHHHHHHhccC
Confidence              47899999999998743  5678999999988732 26899999999999999 66    889999999998865  6


Q ss_pred             CHHHHHHHHhcccCCCCcc-CCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc------CC
Q 048601          210 RTEEISSLVRMKEYESLDC-RDKEGRTPLHLAVNKT----SIGCAKVLLESGADKEAKGKDGKTSLHNAAAN------GD  278 (418)
Q Consensus       210 ~~~~v~~Ll~~~~~~~~~~-~~~~~~t~L~~A~~~~----~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~------g~  278 (418)
                      +.+++++|++.+.  +++. .+..|.||||+|++.+    +.+++++|+++|++++..+..+.|+||.++..      +.
T Consensus       159 ~~~iv~~Ll~~Ga--di~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~  236 (494)
T PHA02989        159 KKDVIKILLSFGV--NLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKE  236 (494)
T ss_pred             CHHHHHHHHHcCC--CccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccc
Confidence            8999999998776  5555 6788999999998764    89999999999999999999999999987654      35


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601          279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH  358 (418)
Q Consensus       279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~  358 (418)
                      .+++++|++ |++++.+|..|+||||+|+..|+.+++++                     |+++|++++.++..|.||||
T Consensus       237 ~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~---------------------LL~~Gadin~~d~~G~TpL~  294 (494)
T PHA02989        237 FKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNY---------------------LLKLGDDIYNVSKDGDTVLT  294 (494)
T ss_pred             hHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHH---------------------HHHcCCCccccCCCCCCHHH
Confidence            788887765 69999999999999999998887776665                     89999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC
Q 048601          359 IAAIKGHKHVVLLLIEFGADV  379 (418)
Q Consensus       359 ~A~~~g~~~~v~~Ll~~ga~~  379 (418)
                      +|+..|+.++|++|++.++..
T Consensus       295 ~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        295 YAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             HHHHcCCHHHHHHHHhcCCCh
Confidence            999999999999999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-34  Score=276.77  Aligned_cols=258  Identities=16%  Similarity=0.159  Sum_probs=213.8

Q ss_pred             HHHHHHhccC--CccccccccccCCCCCccceeeeecccchHHHHHHHHC-----CCHHHHHHHHhcchhhhhcCChhhh
Q 048601           87 RFLIKATVFG--SADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSN-----GDFNAVKSILKRQKMILAGLSSAEA  159 (418)
Q Consensus        87 ~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~-----g~~~~vk~Ll~~~~~~~~~~~~~~~  159 (418)
                      ..+.......  +.+.++.++..-.     +++. .+..|.||||.|+.+     +..+++++|+++|++++.  .+..|
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Ga-----dvn~-~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~--~d~~G  109 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGA-----NVNG-LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK--KNSDG  109 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCC-----CCCC-CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC--CCCCc
Confidence            3344333333  4455565654422     2222 235799999999875     779999999999998744  56689


Q ss_pred             hhhHHHHHHHhhC---CHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCC---HHHHHHHHhcccCCCCccC-CCC
Q 048601          160 ESLYRVATELAAN---SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGR---TEEISSLVRMKEYESLDCR-DKE  232 (418)
Q Consensus       160 ~~~l~~a~~~~~~---~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~-~~~  232 (418)
                      .||+|+|+.  ++   +.+++++|+++|++++.    .+..|.||||+|+..|+   .+++++|++.+.  +++.. +..
T Consensus       110 ~TpLh~a~~--~~~~~~~~iv~~Ll~~Gadvn~----~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga--din~~~~~~  181 (489)
T PHA02798        110 ETPLYCLLS--NGYINNLEILLFMIENGADTTL----LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV--DINTHNNKE  181 (489)
T ss_pred             CcHHHHHHH--cCCcChHHHHHHHHHcCCCccc----cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC--CcccccCcC
Confidence            999999998  54   78999999999999998    99999999999999998   999999998765  66666 457


Q ss_pred             CCcHHHHHHHc----CCHHHHHHHHHcCCCCCCCCCCCccHHH-------HHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Q 048601          233 GRTPLHLAVNK----TSIGCAKVLLESGADKEAKGKDGKTSLH-------NAAANGDRRMVEMLIEMGADPTIKDDRGRS  301 (418)
Q Consensus       233 ~~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~g~t~L~-------~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  301 (418)
                      |.||||.++..    ++.+++++|+++|++++..+..|.++++       ++...++.+++++|+. ++++|.+|..|+|
T Consensus       182 ~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~T  260 (489)
T PHA02798        182 KYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFN  260 (489)
T ss_pred             CCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCcc
Confidence            89999998764    4799999999999999999988888876       2445678899998876 6999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 048601          302 CFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC  381 (418)
Q Consensus       302 ~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  381 (418)
                      |||+|+..|+.+++++                     |+++|+++|.++..|.|||++|+.+|+.++++.|+++|++++.
T Consensus       261 PL~~A~~~~~~~~v~~---------------------LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        261 PLYYSVSHNNRKIFEY---------------------LLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             HHHHHHHcCcHHHHHH---------------------HHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHH
Confidence            9999998887776665                     8999999999999999999999999999999999999999874


Q ss_pred             C
Q 048601          382 Q  382 (418)
Q Consensus       382 ~  382 (418)
                      .
T Consensus       320 i  320 (489)
T PHA02798        320 I  320 (489)
T ss_pred             H
Confidence            4

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.9e-35  Score=292.64  Aligned_cols=267  Identities=31%  Similarity=0.388  Sum_probs=204.9

Q ss_pred             ccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchH
Q 048601          122 FVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSE  201 (418)
Q Consensus       122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~  201 (418)
                      ..|.||+|.|+..|..+.++.++.+|...  +.....+-|++|.|+.  .++..+++.+++.|++.+.    .+..|.||
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~ga~~--~~~gk~gvTplh~aa~--~~~~~~v~l~l~~gA~~~~----~~~lG~T~  443 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEAGADP--NSAGKNGVTPLHVAAH--YGNPRVVKLLLKRGASPNA----KAKLGYTP  443 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhccCCc--ccCCCCCcceeeehhh--ccCcceEEEEeccCCChhh----HhhcCCCh
Confidence            34566666666666666666666666553  2234455666666666  5666666666666666665    66666777


Q ss_pred             HHHHHHcC-CHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601          202 LHVAAAFG-RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR  280 (418)
Q Consensus       202 L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  280 (418)
                      +|.|+..| ..++...++..+.  +++..-..|.||||.|+..|+.++++.|++.++..+.....+.++||.|...+...
T Consensus       444 lhvaa~~g~~~~~~~~l~~~g~--~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~  521 (1143)
T KOG4177|consen  444 LHVAAKKGRYLQIARLLLQYGA--DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVK  521 (1143)
T ss_pred             hhhhhhcccHhhhhhhHhhcCC--CcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHH
Confidence            77777776 5555555554443  55666667777777777777777777777777666666667777777777777777


Q ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC------------chHHHHHHcCCHHHHHHHHhCCCCCCc
Q 048601          281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------------EAVLTAARRGELEGLESLLDKGASTNY  348 (418)
Q Consensus       281 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~------------~~~~~a~~~g~~~~~~~Ll~~g~~~~~  348 (418)
                      +++.++++|++++.++.+|+||||.|+..|+.++|++|+++            +|++.|+..|+.++++.|+++|+++|.
T Consensus       522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            77788888888899999999999999999999999999874            469999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCcHhHHHHhcCC
Q 048601          349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGAD-----VECQDNEGHAPLHLAVEGGR  398 (418)
Q Consensus       349 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t~l~~A~~~g~  398 (418)
                      .+.+|.|||++|+..|+.+++++|+..+++     ....+..|.+|...+-..-.
T Consensus       602 ~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~~  656 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELDT  656 (1143)
T ss_pred             ccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHhhh
Confidence            999999999999999999999999999998     66677889999998876544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.6e-34  Score=263.46  Aligned_cols=199  Identities=34%  Similarity=0.449  Sum_probs=175.9

Q ss_pred             hCCHHHHHHHHHc-CCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCC-CCCCcHHHHHHHcCCHHH
Q 048601          171 ANSEDMVSLLLRA-GLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD-KEGRTPLHLAVNKTSIGC  248 (418)
Q Consensus       171 ~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~  248 (418)
                      .|.++-|+.|++. |.+++.    .|.+|.|+||+|+.+++++++++|+++++  ++|..+ .-+.||||+|+++|+..+
T Consensus        54 ~G~l~~v~~lve~~g~~v~~----~D~~g~tlLHWAAiNNrl~v~r~li~~ga--dvn~~gG~l~stPLHWAar~G~~~v  127 (600)
T KOG0509|consen   54 YGELETVKELVESEGESVNN----PDREGVTLLHWAAINNRLDVARYLISHGA--DVNAIGGVLGSTPLHWAARNGHISV  127 (600)
T ss_pred             cchHHHHHHHHhhcCcCCCC----CCcCCccceeHHHHcCcHHHHHHHHHcCC--CccccCCCCCCCcchHHHHcCcHHH
Confidence            4566666666665 666665    78899999999999999999999998887  677776 678999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHH
Q 048601          249 AKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAA  328 (418)
Q Consensus       249 v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~  328 (418)
                      |++|+++|++++.+|.+|.+|||.|++.|+.-+|-+|+.+|++++.+|.+|+||||+|+.+|+...+..           
T Consensus       128 v~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~-----------  196 (600)
T KOG0509|consen  128 VDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRR-----------  196 (600)
T ss_pred             HHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHH-----------
Confidence            999999999999999999999999999999999999999999999999999999999999887665444           


Q ss_pred             HcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhc
Q 048601          329 RRGELEGLESLLDKGASTNYCD-QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG  396 (418)
Q Consensus       329 ~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~  396 (418)
                                |++-|+.++..| ..|.||||+|+..|+..++++|++-|++.+..|.+|.||+++|.+.
T Consensus       197 ----------LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  197 ----------LLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ----------HHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence                      788888998877 8899999999999999999977888899999999999999999876

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=264.98  Aligned_cols=285  Identities=16%  Similarity=0.098  Sum_probs=203.3

Q ss_pred             cccchHHHHH-HHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCccc---------
Q 048601          121 AFVGPFLLRH-AVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEID---------  190 (418)
Q Consensus       121 ~~~g~~~L~~-A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~---------  190 (418)
                      +.+|..++|+ |..+|++|+|++|+++|++++..  ...+.+++++|+.. .++.|++++|+++|+++...         
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~--~n~~~~~l~ya~~~-~~~~eivk~Ll~~Gad~~~~~~~g~~~~~  144 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLKLLISKGLEINSI--KNGINIVEKYATTS-NPNVDVFKLLLDKGIPTCSNIQYGYKIII  144 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHHHHHHcCCCcccc--cCCCCcceeEeecC-CCChHHHHHHHHCCCCcccccccCcchhh
Confidence            3446667764 55578888888888888887543  34567777877541 48888888888888874321         


Q ss_pred             -----------------------ccccCCCCchHHHHHHHcC-------CHHHHHHHHhcccCCCCccCCCCCCcHHHHH
Q 048601          191 -----------------------ERVKTKDGWSELHVAAAFG-------RTEEISSLVRMKEYESLDCRDKEGRTPLHLA  240 (418)
Q Consensus       191 -----------------------~~~~~~~~~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A  240 (418)
                                             .+..+..|.||||+|+.++       +.|+++.|++++.  .++..|..|.||||+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~--~~~~~d~~g~t~l~~~  222 (631)
T PHA02792        145 EQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK--EMRYYTYREHTTLYYY  222 (631)
T ss_pred             hhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC--CcCccCCCCChHHHHH
Confidence                                   1235566888888888888       7888888887765  6677788888888888


Q ss_pred             HHcC--CHHHHHHHHHcCCCCCC-------------------CCC-------CCc-------------------------
Q 048601          241 VNKT--SIGCAKVLLESGADKEA-------------------KGK-------DGK-------------------------  267 (418)
Q Consensus       241 ~~~~--~~~~v~~Ll~~~~~~~~-------------------~~~-------~g~-------------------------  267 (418)
                      +.+.  ..|++++|++.......                   .|.       .|.                         
T Consensus       223 ~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~  302 (631)
T PHA02792        223 VDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRY  302 (631)
T ss_pred             HHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence            8888  67788887764210000                   000       000                         


Q ss_pred             -----cHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCc--------------hHHH
Q 048601          268 -----TSLHNAAANG--DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE--------------AVLT  326 (418)
Q Consensus       268 -----t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~--------------~~~~  326 (418)
                           -.||.-..++  +.+++++|+++|++...  ..+..+++.|+..|+.+++++|++++              +++.
T Consensus       303 ~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~  380 (631)
T PHA02792        303 TDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFP  380 (631)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHH
Confidence                 1233333344  57788888888887642  12445677788888888888886432              2444


Q ss_pred             HHHcCCH---HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHh---cC---
Q 048601          327 AARRGEL---EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE---GG---  397 (418)
Q Consensus       327 a~~~g~~---~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~---~g---  397 (418)
                      |+.....   +++++|+++|+++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+.   ++   
T Consensus       381 A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~  460 (631)
T PHA02792        381 TLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPE  460 (631)
T ss_pred             HHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHH
Confidence            4444333   46888999999999999999999999999999999999999999999999999999999976   22   


Q ss_pred             ----CcceeehhhhccCCc
Q 048601          398 ----RVEPLLFIWLKQWGT  412 (418)
Q Consensus       398 ----~~~~v~~Ll~~~~g~  412 (418)
                          ..++++.|+.+.+..
T Consensus       461 i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        461 IAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHHHHHHHHhcCCCh
Confidence                245688888555443

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=258.82  Aligned_cols=286  Identities=14%  Similarity=0.129  Sum_probs=214.9

Q ss_pred             cccchHHHHHHHHCCCHH-HHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601          121 AFVGPFLLRHAVSNGDFN-AVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW  199 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~-~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  199 (418)
                      .+.|.|||+.-..+.+.- -++.++.-+....  ...-++..++++-+.. +|+.|+|++|+++|++++.    ++..+.
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~~~~~~s~-n~~lElvk~LI~~GAdvN~----~~n~~~  106 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLLSSVD--YKNINDFDIFEYLCSD-NIDIELLKLLISKGLEINS----IKNGIN  106 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCC--cCccCCccHHHHHHHh-cccHHHHHHHHHcCCCccc----ccCCCC
Confidence            466889999887766532 2334443333321  1233445577665553 7999999999999999998    777888


Q ss_pred             hHHHHHHH-cCCHHHHHHHHhcccCC----------------------------------CCccCCCCCCcHHHHHHHcC
Q 048601          200 SELHVAAA-FGRTEEISSLVRMKEYE----------------------------------SLDCRDKEGRTPLHLAVNKT  244 (418)
Q Consensus       200 t~L~~A~~-~g~~~~v~~Ll~~~~~~----------------------------------~~~~~~~~~~t~L~~A~~~~  244 (418)
                      +|+++|+. .++.|++++|++.+...                                  .++..+..|.||||+|+.++
T Consensus       107 ~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~  186 (631)
T PHA02792        107 IVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITR  186 (631)
T ss_pred             cceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhC
Confidence            99999966 69999999999887531                                  13456677999999999998


Q ss_pred             -------CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC--CHHHHHHHHHcCCCCC-------------c------cC
Q 048601          245 -------SIGCAKVLLESGADKEAKGKDGKTSLHNAAANG--DRRMVEMLIEMGADPT-------------I------KD  296 (418)
Q Consensus       245 -------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~-------------~------~~  296 (418)
                             +.++++.|+++|++++..|..|.||||+|+.+.  ..|++++|++..-+..             .      .|
T Consensus       187 s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id  266 (631)
T PHA02792        187 SQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKID  266 (631)
T ss_pred             CcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCcc
Confidence                   899999999999999999999999999999998  8889998887421000             0      00


Q ss_pred             -------CCCCCH------------------------------HHHHHHcC--CHHHHHHHhcCch----------HHHH
Q 048601          297 -------DRGRSC------------------------------FDVARDKG--HIEVLEVLQRGEA----------VLTA  327 (418)
Q Consensus       297 -------~~g~t~------------------------------l~~A~~~~--~~~~~~~l~~~~~----------~~~a  327 (418)
                             -.|.+|                              ||.=..++  +.+++++|.+.++          ++.|
T Consensus       267 ~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~A  346 (631)
T PHA02792        267 NYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQK  346 (631)
T ss_pred             HHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHH
Confidence                   001110                              11111122  4566666654332          5678


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcCCCCC--CcHHHHHHHcCCH---HHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCccee
Q 048601          328 ARRGELEGLESLLDKGASTNYCDQYG--LTPLHIAAIKGHK---HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPL  402 (418)
Q Consensus       328 ~~~g~~~~~~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~---~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v  402 (418)
                      +..|+.+++++|+++|++++.+|..|  .||||+|+..+..   +++++|+++|+|++.+|..|+||||+|+..++.+++
T Consensus       347 a~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eiv  426 (631)
T PHA02792        347 FDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLV  426 (631)
T ss_pred             HHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHH
Confidence            99999999999999999999988775  6999998876654   468999999999999999999999999999999999


Q ss_pred             ehhhhccCCcccc
Q 048601          403 LFIWLKQWGTMVS  415 (418)
Q Consensus       403 ~~Ll~~~~g~~~~  415 (418)
                      ++|+  +.|++++
T Consensus       427 elLL--s~GADIN  437 (631)
T PHA02792        427 EWLI--DNGADIN  437 (631)
T ss_pred             HHHH--HCCCCCC
Confidence            9999  5577766

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.9e-32  Score=229.79  Aligned_cols=178  Identities=18%  Similarity=0.213  Sum_probs=157.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCC-CCCccHHHH
Q 048601          196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT--SIGCAKVLLESGADKEAKG-KDGKTSLHN  272 (418)
Q Consensus       196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~  272 (418)
                      ..+.|||+.|+..|+.++|+.|++.     .+..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            3457999999999999999999863     3567889999999999854  8999999999999999997 589999999


Q ss_pred             HHHc---CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcC
Q 048601          273 AAAN---GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC  349 (418)
Q Consensus       273 A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~  349 (418)
                      |+..   ++.+++++|+++|++++.+|..|.||||.|+...                   .++.+++++|+++|++++.+
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~-------------------~~~~~iv~~Li~~gadin~~  154 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNF-------------------NVRINVIKLLIDSGVSFLNK  154 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhc-------------------cCCHHHHHHHHHcCCCcccc
Confidence            8753   5799999999999999999999999999986531                   23456666699999999999


Q ss_pred             CCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcC
Q 048601          350 DQYGLTPLHI-AAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG  397 (418)
Q Consensus       350 ~~~g~t~L~~-A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g  397 (418)
                      |..|.||||. |+..++.+++++|+++|++++.+|..|+|||++|+.++
T Consensus       155 d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        155 DFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999995 56788999999999999999999999999999999765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.9e-33  Score=245.54  Aligned_cols=192  Identities=30%  Similarity=0.465  Sum_probs=161.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccC-------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEY-------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDG  266 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~-------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g  266 (418)
                      ...+|.|||-.|+++||.++|++|+++...       ..+|-....|.+||-.|+..||+++||.|+++|+++|......
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN  117 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN  117 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccC
Confidence            345567888888999999999998874431       1233345568888888888999999999999999998888888


Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC
Q 048601          267 KTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST  346 (418)
Q Consensus       267 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~  346 (418)
                      .|||-.||.-|+.++||+|+++|+|++..+..|.|+||+|+.+||.+++++                     |++.|+|+
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qy---------------------Lle~gADv  176 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQY---------------------LLEQGADV  176 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHH---------------------HHHhCCCc
Confidence            899999999999999999999999999999999999888888777776665                     88899999


Q ss_pred             CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       347 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                      |.++..|+|+||.|++.|+++++++|+.+|+-++ +|..|.|||..|+..|+.++|++|+.
T Consensus       177 n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  177 NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             chhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999998776 46679999999999999999998883

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.4e-32  Score=250.61  Aligned_cols=192  Identities=38%  Similarity=0.563  Sum_probs=177.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHHHcC
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNAAANG  277 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g  277 (418)
                      ..-+..|+..|.++.++.|++.. ...++..|.+|.|+||+||.+++++++++|+++|+++|..+ .-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            45688999999999999999875 46788899999999999999999999999999999999988 66899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q 048601          278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL  357 (418)
Q Consensus       278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L  357 (418)
                      +..+|++|+++|||++.+|.+|.+|+|.|+..|+.-++-+                     |+.+|+++|.+|.+|+|||
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vay---------------------ll~~~~d~d~~D~~grTpL  182 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAY---------------------LLSKGADIDLRDNNGRTPL  182 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHH---------------------HHHhcccCCCcCCCCCCHH
Confidence            9999999999999999999999999999999888877766                     8889999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCcHhHHHHhcCCcceeehhhhccCCccc
Q 048601          358 HIAAIKGHKHVVLLLIEFGADVECQD-NEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV  414 (418)
Q Consensus       358 ~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~  414 (418)
                      |+|+.+|+...++.|+..|+.+..+| +.|.||||.|+..|+..++.+|+  +.|++.
T Consensus       183 mwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~--~g~~~~  238 (600)
T KOG0509|consen  183 MWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLL--EGGADL  238 (600)
T ss_pred             HHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhh--hcCCcc
Confidence            99999999888999999999999888 99999999999999999999444  555544

>PHA02795 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=244.71  Aligned_cols=189  Identities=17%  Similarity=0.133  Sum_probs=108.6

Q ss_pred             HHHHHhhCCHHHHHHHHHcCCCCcccc--cccCCCCchHHHHHHH--cCCHHHHHHHHhcccCCCCccCCCCCCcHHHHH
Q 048601          165 VATELAANSEDMVSLLLRAGLSIEIDE--RVKTKDGWSELHVAAA--FGRTEEISSLVRMKEYESLDCRDKEGRTPLHLA  240 (418)
Q Consensus       165 ~a~~~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A  240 (418)
                      +|+.  .+..|++++|+++|++++...  ..++..++|+||.|+.  .|+.+++++|+++++  +++.  ..+.||+|.|
T Consensus        83 ~~~~--~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GA--DIn~--~~~~t~lh~A  156 (437)
T PHA02795         83 LFAY--ITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGA--VIYK--IECLNAYFRG  156 (437)
T ss_pred             HHhh--cchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCC--CCCC--CCCCCHHHHH
Confidence            4444  456666666666666655100  0044556666666666  566666666665554  3333  2335666666


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCC------CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 048601          241 VNKTSIGCAKVLLESGADKEAKG------KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV  314 (418)
Q Consensus       241 ~~~~~~~~v~~Ll~~~~~~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  314 (418)
                      +..++.+++++|+++|++.....      ..+.+++|.|+..++.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus       157 ~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~ei  236 (437)
T PHA02795        157 ICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDL  236 (437)
T ss_pred             HHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHH
Confidence            66666666666666665322111      224556666666666666666666666666666666666666655555554


Q ss_pred             HHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC--------CHHHHHHHHHcCCCCC
Q 048601          315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKG--------HKHVVLLLIEFGADVE  380 (418)
Q Consensus       315 ~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--------~~~~v~~Ll~~ga~~~  380 (418)
                      +++                     |+++|+++|.++..|.||||+|+.+|        |.+++++|+++|++++
T Consensus       237 Vel---------------------LL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        237 VSW---------------------LLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHH---------------------HHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            443                     56666666666666666666666665        3466666666666553

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=237.32  Aligned_cols=259  Identities=19%  Similarity=0.161  Sum_probs=204.0

Q ss_pred             hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhh----cCChhhhhh
Q 048601           86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILA----GLSSAEAES  161 (418)
Q Consensus        86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~----~~~~~~~~~  161 (418)
                      ++|+... .....+.+..+|......    ++      .+..-.+|+..+..|+++.|+.+|++++-    -......++
T Consensus        50 ~~~~~~~-~~~~~~~~~~~~~~~~~~----i~------~~~~~~~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~  118 (437)
T PHA02795         50 DRFLLEP-ICDPVDVLYDYFRIHRDN----ID------QYIVDRLFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQD  118 (437)
T ss_pred             HHHhhhc-cCCHHHHHHHHHHHcCcc----hh------hhhhhhHHhhcchHHHHHHHHhcccccchhhhhhhccccccH
Confidence            4555432 234455566666555532    22      22223389999999999999999988640    013456899


Q ss_pred             hHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccC-----CCCCCcH
Q 048601          162 LYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR-----DKEGRTP  236 (418)
Q Consensus       162 ~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~~~~~t~  236 (418)
                      +||.++....|+.|+|++|+++|++++.    .  ++.||+|.|+..|+.+++++|++++.. +.+..     +..+.++
T Consensus       119 ~L~~~~~n~~n~~eiV~~LI~~GADIn~----~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~-~~n~~~~~l~~~~~~t~  191 (437)
T PHA02795        119 LLLYYLSNAYVEIDIVDFMVDHGAVIYK----I--ECLNAYFRGICKKESSVVEFILNCGIP-DENDVKLDLYKIIQYTR  191 (437)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHCCCCCCC----C--CCCCHHHHHHHcCcHHHHHHHHhcCCc-ccccccchhhhhhccch
Confidence            9999999888999999999999999986    2  447999999999999999999998752 22222     2457899


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHH
Q 048601          237 LHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE  316 (418)
Q Consensus       237 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  316 (418)
                      +|.|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.-   
T Consensus       192 l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~---  268 (437)
T PHA02795        192 GFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVI---  268 (437)
T ss_pred             hHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988641   


Q ss_pred             HHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 048601          317 VLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE  380 (418)
Q Consensus       317 ~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  380 (418)
                                +...++.++++.|+++|++++...   .|.+...  ..+.++++.++++...++
T Consensus       269 ----------~~~~~~~eIvelLL~~gadI~~~~---~~~~~~~--~~n~~~ik~lI~y~~~ld  317 (437)
T PHA02795        269 ----------ARRETHLKILEILLREPLSIDCIK---LAILNNT--IENHDVIKLCIKYFMMVD  317 (437)
T ss_pred             ----------cccccHHHHHHHHHhCCCCCCchh---HHhhhcc--cchHHHHHHHHHHHHhcc
Confidence                      123457899999999999988642   2333321  237899999999987654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.2e-29  Score=211.67  Aligned_cols=177  Identities=21%  Similarity=0.297  Sum_probs=155.9

Q ss_pred             cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccC-CCCchH
Q 048601          123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKT-KDGWSE  201 (418)
Q Consensus       123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~-~~~~t~  201 (418)
                      .+.+||++|+..|+++.|+.|++...     ..+..+.||+|+|+....++.+++++|+++|++++.    .+ ..|.||
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~n-----~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~----~~~~~g~Tp   90 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFVN-----DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF----KTRDNNLSA   90 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhhh-----ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc----cCCCCCCCH
Confidence            36789999999999999999997532     235678999999988434589999999999999987    65 479999


Q ss_pred             HHHHHHc---CCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCccHHHH-HHH
Q 048601          202 LHVAAAF---GRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN--KTSIGCAKVLLESGADKEAKGKDGKTSLHN-AAA  275 (418)
Q Consensus       202 L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~-A~~  275 (418)
                      ||+|+..   ++.+++++|++.+.  +++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+.
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~ga--din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~  168 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGS--SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILF  168 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHh
Confidence            9998764   47999999998665  889999999999999986  468999999999999999999999999995 567


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 048601          276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKG  310 (418)
Q Consensus       276 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  310 (418)
                      .++.+++++|+++|++++.+|..|+|||++|+..+
T Consensus       169 ~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        169 HSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            88999999999999999999999999999998764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.96  E-value=2.2e-29  Score=200.61  Aligned_cols=214  Identities=28%  Similarity=0.332  Sum_probs=126.4

Q ss_pred             hhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHH
Q 048601          159 AESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLH  238 (418)
Q Consensus       159 ~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~  238 (418)
                      ++..+..+.+  .++.+++..+.....+...   ..+.+|..+++.|+-+|+.+.+..++..+.  ..|..+..+.+|+.
T Consensus        62 ge~~~~~~~~--s~nsd~~v~s~~~~~~~~~---~t~p~g~~~~~v~ap~~s~~k~sttltN~~--rgnevs~~p~s~~s  134 (296)
T KOG0502|consen   62 GESLLTVAVR--SGNSDVAVQSAQLDPDAID---ETDPEGWSALLVAAPCGSVDKVSTTLTNGA--RGNEVSLMPWSPLS  134 (296)
T ss_pred             CCcccchhhh--cCCcHHHHHhhccCCCCCC---CCCchhhhhhhhcCCCCCcceeeeeecccc--cCCccccccCChhh
Confidence            3444444444  4555555554444333221   034446666666666666666666654443  33455555666666


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Q 048601          239 LAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL  318 (418)
Q Consensus       239 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  318 (418)
                      +++...+++.+..+.++  .+|..|+.|.|||++|+..|++++|++|++.|+|++....+..++|..|+..|..++|+. 
T Consensus       135 lsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~l-  211 (296)
T KOG0502|consen  135 LSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVEL-  211 (296)
T ss_pred             HHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHH-
Confidence            66666666555555443  235566666666666666666666666666666666666666666666666666665554 


Q ss_pred             hcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCC
Q 048601          319 QRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR  398 (418)
Q Consensus       319 ~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~  398 (418)
                                          |++++.|+|..|.+|-|||-||++-||.+||+.|++.|||++..+..|++++++|+..|+
T Consensus       212 --------------------LL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  212 --------------------LLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             --------------------HHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhh
Confidence                                566666666666666666666666666666666666666666666666666666666665


Q ss_pred             cceee
Q 048601          399 VEPLL  403 (418)
Q Consensus       399 ~~~v~  403 (418)
                      - +|+
T Consensus       272 r-~Vq  275 (296)
T KOG0502|consen  272 R-IVQ  275 (296)
T ss_pred             H-HHH
Confidence            5 443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=1.8e-28  Score=195.45  Aligned_cols=239  Identities=29%  Similarity=0.316  Sum_probs=214.0

Q ss_pred             ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601          120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW  199 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  199 (418)
                      .+..|...+-.|...|+.++++.++...++.....++ +|...++.++-  .++.+.+..++.+|...|.    .+--+.
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p-~g~~~~~v~ap--~~s~~k~sttltN~~rgne----vs~~p~  130 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDP-EGWSALLVAAP--CGSVDKVSTTLTNGARGNE----VSLMPW  130 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCc-hhhhhhhhcCC--CCCcceeeeeecccccCCc----cccccC
Confidence            4456777888999999999999988777666555444 47788888887  7899999999999998887    777899


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      +|+.+++...+++++..+.+.    .+|..|+.|.|||.+|+..|++++|++|++.|++++....+..++|.+|++.|-.
T Consensus       131 s~~slsVhql~L~~~~~~~~n----~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggyt  206 (296)
T KOG0502|consen  131 SPLSLSVHQLHLDVVDLLVNN----KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYT  206 (296)
T ss_pred             ChhhHHHHHHHHHHHHHHhhc----cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChH
Confidence            999999999999988887653    4688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601          280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI  359 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  359 (418)
                      ++|++|++.+.|+|.-|-+|-|||-+|+..||.+|++.                     |++.|++++..+..|.+++..
T Consensus       207 diV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~---------------------Ll~sGAd~t~e~dsGy~~mdl  265 (296)
T KOG0502|consen  207 DIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVES---------------------LLNSGADVTQEDDSGYWIMDL  265 (296)
T ss_pred             HHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHH---------------------HHhcCCCcccccccCCcHHHH
Confidence            99999999999999999999999999888877776665                     999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhH
Q 048601          360 AAIKGHKHVVLLLIEFGADVECQDNEGHAPLH  391 (418)
Q Consensus       360 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  391 (418)
                      |+..|+. +|+..+++-++..++|+..++|+|
T Consensus       266 AValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  266 AVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            9999998 999999999999999988888874

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=2.1e-26  Score=234.58  Aligned_cols=194  Identities=25%  Similarity=0.350  Sum_probs=166.2

Q ss_pred             CCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 048601          172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKV  251 (418)
Q Consensus       172 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~  251 (418)
                      ...++-.++.+.+...      .+..+.++|+.|+..|+.++++.|++.+.  +++..|..|.||||+|+..|+.+++++
T Consensus       505 ~~l~v~~ll~~~~~~~------~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~--d~n~~d~~G~TpLh~Aa~~g~~~~v~~  576 (823)
T PLN03192        505 HDLNVGDLLGDNGGEH------DDPNMASNLLTVASTGNAALLEELLKAKL--DPDIGDSKGRTPLHIAASKGYEDCVLV  576 (823)
T ss_pred             ccccHHHHHhhccccc------CCccchhHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcChHHHHHH
Confidence            4556667777766532      34456789999999999999999997654  788999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcC
Q 048601          252 LLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRG  331 (418)
Q Consensus       252 Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g  331 (418)
                      |+++|++++.+|.+|.||||+|+..|+.+++++|++.++..+.  ..+.++||.|+..|+.++++.              
T Consensus       577 Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~--------------  640 (823)
T PLN03192        577 LLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKE--------------  640 (823)
T ss_pred             HHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHH--------------
Confidence            9999999999999999999999999999999999988766543  345678887777666665554              


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC-CcHhHHHHhc
Q 048601          332 ELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG-HAPLHLAVEG  396 (418)
Q Consensus       332 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~t~l~~A~~~  396 (418)
                             |+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|..| .+|++++...
T Consensus       641 -------Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        641 -------LLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             -------HHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence                   899999999999999999999999999999999999999999999988 8999887543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.95  E-value=8.1e-28  Score=223.67  Aligned_cols=239  Identities=29%  Similarity=0.423  Sum_probs=193.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHH
Q 048601          126 FLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVA  205 (418)
Q Consensus       126 ~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A  205 (418)
                      +-|..|++.|+++.+..||++...         +..++..-.               ...+.+.    .|.+|.|.||.|
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~---------r~~~l~~~t---------------rsds~n~----qd~~gfTalhha   56 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKG---------RSGLLFFTT---------------RSDSHNL----QDYSGFTLLHHA   56 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCC---------CCCCCCCCC---------------CCccccc----cCccchhHHHHH
Confidence            346789999999999999975321         111110000               0111222    677888889999


Q ss_pred             HHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHH
Q 048601          206 AAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML  285 (418)
Q Consensus       206 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  285 (418)
                      +.+|+.++++.|++...  .++..+..|.+|||+|+..|+.+++++|+.++..+|.....|.||||.|++.|+.+++.+|
T Consensus        57 ~Lng~~~is~llle~ea--~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~L  134 (854)
T KOG0507|consen   57 VLNGQNQISKLLLDYEA--LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYL  134 (854)
T ss_pred             HhcCchHHHHHHhcchh--hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHH
Confidence            99999888888887665  5667778888899999999999999988888888888888888999999989999999999


Q ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC--------------------chHHHHHHcCCHHHHHHHHhCCCC
Q 048601          286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG--------------------EAVLTAARRGELEGLESLLDKGAS  345 (418)
Q Consensus       286 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~--------------------~~~~~a~~~g~~~~~~~Ll~~g~~  345 (418)
                      +.+|+|+-.++..+.|++..|++.|..++++.|++.                    .+++.|+++|+.++++.|++.|.+
T Consensus       135 l~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d  214 (854)
T KOG0507|consen  135 LKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD  214 (854)
T ss_pred             HhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC
Confidence            988888888888888999999988888888888542                    247788999999999999999999


Q ss_pred             CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHh
Q 048601          346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE  395 (418)
Q Consensus       346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  395 (418)
                      +|.....| |+||.|+..|..++|++|++.|.+...++..|.|+|++-..
T Consensus       215 in~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  215 INYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             cccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence            99887766 89999999999999999999999999999999999987654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=8.6e-27  Score=236.23  Aligned_cols=248  Identities=21%  Similarity=0.187  Sum_probs=183.5

Q ss_pred             cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHH-HHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchH
Q 048601          123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYR-VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSE  201 (418)
Q Consensus       123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~-~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~  201 (418)
                      .+...++.|++.|+.+.|+.+++++...+.+..+..+.++|| .|+.  +++.+++++|+++|+        .+..|.||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~--~~~~eiv~lLl~~g~--------~~~~G~T~   85 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIE--NENLELTELLLNLSC--------RGAVGDTL   85 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHh--cChHHHHHHHHhCCC--------CCCcChHH
Confidence            357799999999999999999988433333445667899999 7777  789999999999986        46679999


Q ss_pred             HHHHHHcCCHHHH----HHHHhcccC--------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC------
Q 048601          202 LHVAAAFGRTEEI----SSLVRMKEY--------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG------  263 (418)
Q Consensus       202 L~~A~~~g~~~~v----~~Ll~~~~~--------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------  263 (418)
                      ||.|+.. ..+.+    ..+......        .........|.||||+|+..|+.+++++|+++|++++.++      
T Consensus        86 Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~  164 (743)
T TIGR00870        86 LHAISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV  164 (743)
T ss_pred             HHHHHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh
Confidence            9999873 23333    333322211        0011223569999999999999999999999999998653      


Q ss_pred             --------CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHH
Q 048601          264 --------KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG  335 (418)
Q Consensus       264 --------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~  335 (418)
                              ..|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+.......         ..   ...+
T Consensus       165 ~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~---------~l---~~~~  232 (743)
T TIGR00870       165 KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYE---------EL---SCQM  232 (743)
T ss_pred             cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHH---------HH---HHHH
Confidence                    258999999999999999999999999999999999999999998873211000         00   1122


Q ss_pred             HHHHHhCCC---CC----CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601          336 LESLLDKGA---ST----NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA  393 (418)
Q Consensus       336 ~~~Ll~~g~---~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  393 (418)
                      .+++++.++   +.    +..|..|.||||+|+..|+.+++++|++.+++..........|.+.+
T Consensus       233 ~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       233 YNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             HHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHh
Confidence            333444433   33    56788999999999999999999999997655443334444454444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=5.5e-27  Score=237.64  Aligned_cols=219  Identities=22%  Similarity=0.221  Sum_probs=176.6

Q ss_pred             hhhhhhHHHHHHHhhCCHHHHHHHHHc--CCCCcccccccCCCCchHHH-HHHHcCCHHHHHHHHhcccCCCCccCCCCC
Q 048601          157 AEAESLYRVATELAANSEDMVSLLLRA--GLSIEIDERVKTKDGWSELH-VAAAFGRTEEISSLVRMKEYESLDCRDKEG  233 (418)
Q Consensus       157 ~~~~~~l~~a~~~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  233 (418)
                      ...+..+..|++  .|+.+.++.+++.  +.+++.    .|..|.|||| .|+.+++.++++.|++.+.      .+..|
T Consensus        15 ~~~~~~~l~A~~--~g~~~~v~~lL~~~~~~~in~----~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G   82 (743)
T TIGR00870        15 SDEEKAFLPAAE--RGDLASVYRDLEEPKKLNINC----PDRLGRSALFVAAIENENLELTELLLNLSC------RGAVG   82 (743)
T ss_pred             CHHHHHHHHHHH--cCCHHHHHHHhccccccCCCC----cCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcC
Confidence            456778888888  8999999999999  777776    8899999999 8999999999999997553      57789


Q ss_pred             CcHHHHHHHcC---CHHHHHHHHHcCCC------C----CCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCC---
Q 048601          234 RTPLHLAVNKT---SIGCAKVLLESGAD------K----EAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD---  297 (418)
Q Consensus       234 ~t~L~~A~~~~---~~~~v~~Ll~~~~~------~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---  297 (418)
                      .||||.|+..+   ...+++.+.+.+.+      .    ......|.||||+|+.+|+.++|++|+++|++++.++.   
T Consensus        83 ~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~  162 (743)
T TIGR00870        83 DTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF  162 (743)
T ss_pred             hHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch
Confidence            99999998732   23344555544422      1    11234699999999999999999999999999986532   


Q ss_pred             -----------CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC--
Q 048601          298 -----------RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKG--  364 (418)
Q Consensus       298 -----------~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--  364 (418)
                                 .|+||||.|+..|+.++++                     +|+++|+|++.+|..|+||||+|+..+  
T Consensus       163 ~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~---------------------lLl~~gadin~~d~~g~T~Lh~A~~~~~~  221 (743)
T TIGR00870       163 FVKSQGVDSFYHGESPLNAAACLGSPSIVA---------------------LLSEDPADILTADSLGNTLLHLLVMENEF  221 (743)
T ss_pred             hhcCCCCCcccccccHHHHHHHhCCHHHHH---------------------HHhcCCcchhhHhhhhhHHHHHHHhhhhh
Confidence                       4677777777666666555                     489999999999999999999999987  


Q ss_pred             -------CHHHHHHHHHcCCCC-------CcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          365 -------HKHVVLLLIEFGADV-------ECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       365 -------~~~~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                             ...+.+++++.++..       +..|..|.|||++|++.|+.+++++|++.
T Consensus       222 ~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       222 KAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence                   344667777776654       56799999999999999999999999974

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.94  E-value=6.3e-28  Score=231.30  Aligned_cols=310  Identities=23%  Similarity=0.231  Sum_probs=262.6

Q ss_pred             hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601           86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV  165 (418)
Q Consensus        86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~  165 (418)
                      +.-|..++..|+.|.+..++.+-.   +++.   .+..|.+||..|+-.||..+|+.|+.+.+++... .+..++++|.+
T Consensus       758 ~t~LT~acaggh~e~vellv~rga---nieh---rdkkgf~plImaatagh~tvV~~llk~ha~veaQ-sdrtkdt~lSl  830 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGA---NIEH---RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQ-SDRTKDTMLSL  830 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcc---cccc---cccccchhhhhhcccCchHHHHHHHhhhhhhhhh-cccccCceEEE
Confidence            445667777788877777765422   1211   2335888999999999999999999888877544 45677889999


Q ss_pred             HHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCC
Q 048601          166 ATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS  245 (418)
Q Consensus       166 a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~  245 (418)
                      |+.  .|+.++|++|+..|++-..    ++...+|||.+|...|..+++..|+..+...+...-.+.|-.||++|..+||
T Consensus       831 acs--ggr~~vvelLl~~gankeh----rnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh  904 (2131)
T KOG4369|consen  831 ACS--GGRTRVVELLLNAGANKEH----RNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH  904 (2131)
T ss_pred             ecC--CCcchHHHHHHHhhccccc----cchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc
Confidence            988  8899999999999987666    7888889999999999999999999877644444455778899999999999


Q ss_pred             HHHHHHHHHcCCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCc--
Q 048601          246 IGCAKVLLESGADKEAKG-KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE--  322 (418)
Q Consensus       246 ~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~--  322 (418)
                      .+.++.|++.|.++|..- .+..|+|-+|+..|..++|.+||...+++..+...|.|||+-++..|..|+-..|+..+  
T Consensus       905 ~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  905 QAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             cHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            999999999999888754 45678999999999999999999999999889999999999999999999999987533  


Q ss_pred             ------------hHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHh
Q 048601          323 ------------AVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPL  390 (418)
Q Consensus       323 ------------~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l  390 (418)
                                  ++-.++..||...++.|+...+-+..++..|.|+|..|+.-|++..+.+|+++++|++..|+...+++
T Consensus       985 ~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~ 1064 (2131)
T KOG4369|consen  985 TNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRT 1064 (2131)
T ss_pred             cccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhccccccc
Confidence                        36678899999999999999899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcceeehhhhc
Q 048601          391 HLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       391 ~~A~~~g~~~~v~~Ll~~  408 (418)
                      +-|.+.||++||+|....
T Consensus      1065 maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1065 MAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             HHHHHhchhheeccccCc
Confidence            999999999999998743

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=9.8e-25  Score=222.36  Aligned_cols=195  Identities=19%  Similarity=0.282  Sum_probs=158.2

Q ss_pred             CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHH
Q 048601          134 NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEE  213 (418)
Q Consensus       134 ~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~  213 (418)
                      ..+.++-..+.+.+...    ......++++.|+.  .|+.++++.|++.|++++.    .|..|.||||+|+..|+.++
T Consensus       504 l~~l~v~~ll~~~~~~~----~~~~~~~~L~~Aa~--~g~~~~l~~Ll~~G~d~n~----~d~~G~TpLh~Aa~~g~~~~  573 (823)
T PLN03192        504 LHDLNVGDLLGDNGGEH----DDPNMASNLLTVAS--TGNAALLEELLKAKLDPDI----GDSKGRTPLHIAASKGYEDC  573 (823)
T ss_pred             hccccHHHHHhhccccc----CCccchhHHHHHHH--cCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcChHHH
Confidence            34444444454443321    22345567777877  7999999999999999887    88999999999999999999


Q ss_pred             HHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 048601          214 ISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPT  293 (418)
Q Consensus       214 v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  293 (418)
                      +++|++++.  +++.+|..|.||||+|+..|+.+++++|++.++..+.  ..+.++||.|+..|+.+++++|+++|++++
T Consensus       574 v~~Ll~~ga--din~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin  649 (823)
T PLN03192        574 VLVLLKHAC--NVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVD  649 (823)
T ss_pred             HHHHHhcCC--CCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence            999998654  7788899999999999999999999999988775543  456789999999999999999999999999


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC-CcHHHHHHHc
Q 048601          294 IKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG-LTPLHIAAIK  363 (418)
Q Consensus       294 ~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~  363 (418)
                      .+|..|.||||.|+..|+.+++++                     |+++|++++..+..| .||+..+...
T Consensus       650 ~~d~~G~TpLh~A~~~g~~~iv~~---------------------Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        650 SEDHQGATALQVAMAEDHVDMVRL---------------------LIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCCCCCCCHHHHHHHCCcHHHHHH---------------------HHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999888877776665                     889999999988887 8888877543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=8.4e-27  Score=223.66  Aligned_cols=281  Identities=24%  Similarity=0.232  Sum_probs=249.2

Q ss_pred             cccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601          121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS  200 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t  200 (418)
                      ...-.|+|-.||..|+-|+|+.|+.+|+++  ...+..+-+++.+|+.  .|+..+|+.|+.+-++++..   .|+.+.|
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgani--ehrdkkgf~plImaat--agh~tvV~~llk~ha~veaQ---sdrtkdt  826 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANI--EHRDKKGFVPLIMAAT--AGHITVVQDLLKAHADVEAQ---SDRTKDT  826 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccc--cccccccchhhhhhcc--cCchHHHHHHHhhhhhhhhh---cccccCc
Confidence            344678999999999999999999999887  3356678888999888  89999999999999988763   6777889


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCccHHHHHHHcCC
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG--KDGKTSLHNAAANGD  278 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~g~  278 (418)
                      +|.+|+..|..++|+.||..+.  +-..++....|||.+|...|..++++.|+.+|++++.+.  ..|-+||+.|..+||
T Consensus       827 ~lSlacsggr~~vvelLl~~ga--nkehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh  904 (2131)
T KOG4369|consen  827 MLSLACSGGRTRVVELLLNAGA--NKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH  904 (2131)
T ss_pred             eEEEecCCCcchHHHHHHHhhc--cccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc
Confidence            9999999999999999998766  445677888999999999999999999999999998875  568999999999999


Q ss_pred             HHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHhcC------------chHHHHHHcCCHHHHHHHHhCCCC
Q 048601          279 RRMVEMLIEMGADPTI-KDDRGRSCFDVARDKGHIEVLEVLQRG------------EAVLTAARRGELEGLESLLDKGAS  345 (418)
Q Consensus       279 ~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~l~~~------------~~~~~a~~~g~~~~~~~Ll~~g~~  345 (418)
                      .+.++.|++.|.|+|. ...+.+|+|.+|+..|..+++..|+..            ++++.++.-|.+|+=+.|+..|+|
T Consensus       905 ~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  905 QAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             cHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            9999999999999996 445678999999999999999999642            358899999999999999999999


Q ss_pred             CCcCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          346 TNYCD--QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       346 ~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                      +|..-  ..-.|+|-+++..||.+.|..|+...+-+..++++|.|+|.+|+-.|++..+.+|+.+..
T Consensus       985 ~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a 1051 (2131)
T KOG4369|consen  985 TNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVA 1051 (2131)
T ss_pred             cccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhccc
Confidence            98632  334589999999999999999999999999999999999999999999999999994433

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=3.7e-25  Score=189.44  Aligned_cols=159  Identities=33%  Similarity=0.547  Sum_probs=129.6

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCccHHHHHHHc-----CCHHHHHHHHHcCCCCCccC-CC
Q 048601          226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESG-ADKEAKGKDGKTSLHNAAAN-----GDRRMVEMLIEMGADPTIKD-DR  298 (418)
Q Consensus       226 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~-~~  298 (418)
                      +|..|.+|+|+||||+..+++++|+.|++.| ++++..+.-|+||+++|+..     .+.++|.-|...| |+|.+. ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            4677888888888888888888888888886 68888888888888887743     4677888888776 566543 45


Q ss_pred             CCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Q 048601          299 GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF-GA  377 (418)
Q Consensus       299 g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga  377 (418)
                      |+|+|++|+.+|..++|+.                     |+..|+|+|.+|.+|.|+||+|++.||.++|++|+.. ++
T Consensus       340 gQTALMLAVSHGr~d~vk~---------------------LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~c  398 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKA---------------------LLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC  398 (452)
T ss_pred             cchhhhhhhhcCcHHHHHH---------------------HHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcc
Confidence            7888888887777766665                     7888889999999999999999999999999888876 67


Q ss_pred             CCCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601          378 DVECQDNEGHAPLHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       378 ~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  406 (418)
                      |+...|..|-|+|.+|.+.||-||.-+|+
T Consensus       399 d~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  399 DISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             cceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            88888888999999999999988877665

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=2.2e-24  Score=184.72  Aligned_cols=160  Identities=29%  Similarity=0.440  Sum_probs=144.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHH-----cCCHHHHHHHHHcCCCCCCCC-CCCc
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN-----KTSIGCAKVLLESGADKEAKG-KDGK  267 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~-----~~~~~~v~~Ll~~~~~~~~~~-~~g~  267 (418)
                      .|.+|+|+||||+..+++++|+.||+.+. +++|.++.-|.||+++|+-     ..+.++|..|...| ++|.+- ..|.
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgv-C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQ  341 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGV-CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQ  341 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCc-ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcc
Confidence            88999999999999999999999999766 7899999999999999984     34578888888775 566654 4699


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCC
Q 048601          268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN  347 (418)
Q Consensus       268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~  347 (418)
                      |+|++|+.+|+.++|+.||..|+|+|.+|.+|.|+|+.|+++||.|+++.|                    |-.-+.|+.
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklL--------------------LA~p~cd~s  401 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLL--------------------LAVPSCDIS  401 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHH--------------------hccCcccce
Confidence            999999999999999999999999999999999999999999999999885                    445578889


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 048601          348 YCDQYGLTPLHIAAIKGHKHVVLLLIEF  375 (418)
Q Consensus       348 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  375 (418)
                      ..|.+|.|+|.+|...||.+|.-+|..+
T Consensus       402 LtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  402 LTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             eecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999999999999999875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3.4e-24  Score=199.76  Aligned_cols=257  Identities=24%  Similarity=0.240  Sum_probs=206.2

Q ss_pred             hHHHHHHhccCCccccccccccCCCCC-------ccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhh
Q 048601           86 DRFLIKATVFGSADSVNSLCVTLPDGS-------TQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAE  158 (418)
Q Consensus        86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~  158 (418)
                      ..-++.|...++.+.+..++.......       ..+...-++..|.|+||.|+.+|+.++++.|++..+.+  .+.+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l--dl~d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL--DLCDTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh--hhhhcc
Confidence            345777888888888888776543221       11222224458999999999999999999999988765  334578


Q ss_pred             hhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHH
Q 048601          159 AESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLH  238 (418)
Q Consensus       159 ~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~  238 (418)
                      +..++|+|+.  +|+.|++++|+.++...+.    .+..|.||||.|+..||.+++.+|+.++.  +.-.++..+.|+|.
T Consensus        82 g~~plhlaaw--~g~~e~vkmll~q~d~~na----~~~e~~tplhlaaqhgh~dvv~~Ll~~~a--dp~i~nns~~t~ld  153 (854)
T KOG0507|consen   82 GILPLHLAAW--NGNLEIVKMLLLQTDILNA----VNIENETPLHLAAQHGHLEVVFYLLKKNA--DPFIRNNSKETVLD  153 (854)
T ss_pred             CcceEEehhh--cCcchHHHHHHhcccCCCc----ccccCcCccchhhhhcchHHHHHHHhcCC--CccccCcccccHHH
Confidence            8999999999  8999999999999976776    88899999999999999999999998776  56678899999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC--------CCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 048601          239 LAVNKTSIGCAKVLLESGADK--------EAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKG  310 (418)
Q Consensus       239 ~A~~~~~~~~v~~Ll~~~~~~--------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  310 (418)
                      .|++.|..++++.|+......        ..++-.+.+|||.|+++|+.++++.|++.|.++|.....| |+||.|+..|
T Consensus       154 lA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcg  232 (854)
T KOG0507|consen  154 LASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCG  232 (854)
T ss_pred             HHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcC
Confidence            999999999999999763221        2344567899999999999999999999999999887666 7777777766


Q ss_pred             CHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc---CCHHHHHHHHH
Q 048601          311 HIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIK---GHKHVVLLLIE  374 (418)
Q Consensus       311 ~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~  374 (418)
                      ..++|.+                     |++.|.+...++.+|+|+|.+-...   ...+++-++..
T Consensus       233 k~evvr~---------------------ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  233 KAEVVRF---------------------LLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             cchhhhH---------------------HHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            6665554                     8999999999999999999876543   34555555544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=172.75  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=114.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHH---HHHHHHcCCCCCccC-CC
Q 048601          227 DCRDKEGRTPLHLAVNKTSI----GCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM---VEMLIEMGADPTIKD-DR  298 (418)
Q Consensus       227 ~~~~~~~~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~-~~  298 (418)
                      +..+..+.+++|.||+.|+.    +++++|++.|+.++.+|..|+||||+|+..|+.+.   +++|+++|++++.++ ..
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~   93 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT   93 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34566677788888888886    56667778888888888888888888888877554   788888898888887 47


Q ss_pred             CCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHH-hCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 048601          299 GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLL-DKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA  377 (418)
Q Consensus       299 g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  377 (418)
                      |+||||+|+..++.+++++                     |+ +.|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        94 g~TpLh~A~~~g~~~iv~~---------------------Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEW---------------------LCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHH---------------------HHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8899888888777776665                     66 4788999889899999999999999999999999999


Q ss_pred             CCCcCCCCCC
Q 048601          378 DVECQDNEGH  387 (418)
Q Consensus       378 ~~~~~d~~g~  387 (418)
                      +++.++..|.
T Consensus       153 ~~~~~~~~~~  162 (166)
T PHA02743        153 VCDDPLSIGL  162 (166)
T ss_pred             CCCCcccCCc
Confidence            9988887765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=6.5e-24  Score=174.04  Aligned_cols=141  Identities=17%  Similarity=0.213  Sum_probs=126.6

Q ss_pred             cCCCCCCCCCCCccHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHc
Q 048601          255 SGADKEAKGKDGKTSLHNAAANGDR----RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR  330 (418)
Q Consensus       255 ~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~  330 (418)
                      +|++++..+.++.++||.|++.|+.    +++++|.+.|++++.+|..|+||||+|+..|+.+.++              
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~--------------   74 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVM--------------   74 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHH--------------
Confidence            5677777888899999999999998    6777888999999999999999999999998876543              


Q ss_pred             CCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          331 GELEGLESLLDKGASTNYCD-QYGLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       331 g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                          ++++|+++|+++|.++ ..|.||||+|+.+|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+  
T Consensus        75 ----~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll--  148 (166)
T PHA02743         75 ----KIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILR--  148 (166)
T ss_pred             ----HHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHH--
Confidence                3577999999999998 589999999999999999999995 89999999999999999999999999999999  


Q ss_pred             cCCcccc
Q 048601          409 QWGTMVS  415 (418)
Q Consensus       409 ~~g~~~~  415 (418)
                      ++|++++
T Consensus       149 ~~ga~~~  155 (166)
T PHA02743        149 ANGAVCD  155 (166)
T ss_pred             HcCCCCC
Confidence            6677765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=5.5e-24  Score=191.69  Aligned_cols=179  Identities=32%  Similarity=0.429  Sum_probs=120.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      .+.+|.|+||-++.-.+.+||++|++++.  +++..|..|+||||.|+..|+..++++|+.+|+++...+..|..|+..+
T Consensus        69 ~n~DglTalhq~~id~~~e~v~~l~e~ga--~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   69 CNVDGLTALHQACIDDNLEMVKFLVENGA--NVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             cCCccchhHHHHHhcccHHHHHHHHHhcC--CccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            44445555555555555555555554443  4444555555555555555555555555555554444444433332222


Q ss_pred             HHcC--------------------------CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHH
Q 048601          274 AANG--------------------------DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA  327 (418)
Q Consensus       274 ~~~g--------------------------~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a  327 (418)
                      ...-                          .+.=++..+..|...+..+..|-|+||+|+.+|..++.+.          
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~l----------  216 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAAL----------  216 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHH----------
Confidence            1110                          0111233344788888877778899998888777776655          


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHh
Q 048601          328 ARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE  395 (418)
Q Consensus       328 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  395 (418)
                                 |+.+|.+++.+|..|+||||.|+..|+.+++++|+++|++.+.....|.+|+++|..
T Consensus       217 -----------Ll~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  217 -----------LLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             -----------HHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence                       899999999999999999999999999999999999999999999999999999875

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=6.7e-23  Score=168.94  Aligned_cols=132  Identities=23%  Similarity=0.354  Sum_probs=116.0

Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCH
Q 048601          260 EAKGKDGKTSLHNAAANGDRRMVEMLIE------MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGEL  333 (418)
Q Consensus       260 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~  333 (418)
                      +.++..|.||||+|+..|+.+++++|+.      .|++++.+|..|+||||+|+..|+.+++                 .
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~-----------------~   77 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA-----------------A   77 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-----------------H
Confidence            3466788899999999999999988754      3678889999999999999998886543                 2


Q ss_pred             HHHHHHHhCCCCCCcCCC-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          334 EGLESLLDKGASTNYCDQ-YGLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       334 ~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      +++++|+++|+++|.++. .|+||||+|+..++.+++++|++ .|++++.+|..|+|||++|+..|+.+++++|+..
T Consensus        78 ~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         78 EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             HHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            456779999999999985 89999999999999999999998 5999999999999999999999999999999855

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=2.8e-22  Score=165.20  Aligned_cols=132  Identities=20%  Similarity=0.317  Sum_probs=109.4

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCccHHHHHHHcCC----HHHHHHHHHcCCCCCccC
Q 048601          227 DCRDKEGRTPLHLAVNKTSIGCAKVLLE------SGADKEAKGKDGKTSLHNAAANGD----RRMVEMLIEMGADPTIKD  296 (418)
Q Consensus       227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~------~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~  296 (418)
                      +.++..|.||||+|++.|+.+++++|+.      .|++++.+|..|.||||+|+..|+    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            3456778888888888888888888753      357788888889999999998888    588889999999998887


Q ss_pred             C-CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 048601          297 D-RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE  374 (418)
Q Consensus       297 ~-~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  374 (418)
                      . .|+||||+|+..++.+++++                     |++ .|++++..+..|+||||+|+..|+.+++++|++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~---------------------Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEW---------------------LCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHH---------------------HHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            5 88999998888887776665                     665 588889889999999999999999999999998


Q ss_pred             cCCCC
Q 048601          375 FGADV  379 (418)
Q Consensus       375 ~ga~~  379 (418)
                      +++..
T Consensus       154 ~~~~~  158 (169)
T PHA02741        154 IVATS  158 (169)
T ss_pred             HHHHh
Confidence            87643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=4.4e-22  Score=175.42  Aligned_cols=153  Identities=18%  Similarity=0.191  Sum_probs=118.5

Q ss_pred             cCCCCch-HHHHHHHcCCHHHHHHHHhcccCCCCccC----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCc
Q 048601          194 KTKDGWS-ELHVAAAFGRTEEISSLVRMKEYESLDCR----DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK-GKDGK  267 (418)
Q Consensus       194 ~~~~~~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~  267 (418)
                      +|..+.| +|+.|+..|+.+++++|++++.  +++.+    +..|.||||+|+..++.+++++|+++|++++.. +..|.
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GA--diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGA--DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCC--CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            6666664 5667777788899999987766  55655    457889999999889999999999999988875 45788


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCC
Q 048601          268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN  347 (418)
Q Consensus       268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~  347 (418)
                      ||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++.+++..                     +  .|..  
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~---------------------~--~~~~--  160 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFM---------------------I--CDNE--  160 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHH---------------------h--cCCc--
Confidence            99999988899999999999999888888888899988888777765433                     2  2222  


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 048601          348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGA  377 (418)
Q Consensus       348 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  377 (418)
                       .+..+.+|++++   ++.+++++|+++++
T Consensus       161 -~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        161 -ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             -ccccccChhhhh---ccHHHHHHHHHHHH
Confidence             344567777765   46888888888876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.5e-22  Score=182.46  Aligned_cols=207  Identities=31%  Similarity=0.407  Sum_probs=175.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR  280 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  280 (418)
                      .+.-|+..|..+-+..|+..+.  ..+..+.+|.|+||-+|...+.+||++|+++|++++..|..|+||||.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga--~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGA--SPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCC--CccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            4667889999999999997654  66889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhc--CchHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCC
Q 048601          281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR--GEAVLTAARRGE-----LEGLESLLDKGASTNYCDQYG  353 (418)
Q Consensus       281 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~--~~~~~~a~~~g~-----~~~~~~Ll~~g~~~~~~~~~g  353 (418)
                      ++++|+.+|+++-..+..|..|...+...-..+++.....  +.. +.+++.-.     -++-+|+. .|.+.+..+..|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~-iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~rG  198 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID-IEAARKAEEQTMLDDARQWLN-AGAELDARHARG  198 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc-HHHHhhhhHHHHHHHHHHHHh-cccccccccccc
Confidence            9999999999999999999999888776655555544321  111 22222221     23344444 888888888889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCC
Q 048601          354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG  411 (418)
Q Consensus       354 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g  411 (418)
                      .|+||.|+.+|+.++.++|++.|.+++.+|..|+||||.|+.=|..++.++|+++..+
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD  256 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999988855444

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=6.3e-22  Score=160.95  Aligned_cols=131  Identities=21%  Similarity=0.251  Sum_probs=84.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--C-----CCCCCCCCccHHHHHHHcCCH---HHHHHHHHcCCCCCccC
Q 048601          227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGA--D-----KEAKGKDGKTSLHNAAANGDR---RMVEMLIEMGADPTIKD  296 (418)
Q Consensus       227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~--~-----~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~  296 (418)
                      +..|..|.||||+|++.|+.  +.++...+.  +     ++.++.+|.||||+|+..|+.   +++++|++.|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            34566677777777777763  222222211  1     223466777777777777765   35667777777777766


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 048601          297 -DRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE  374 (418)
Q Consensus       297 -~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  374 (418)
                       ..|+||||+|+..|+.+++++                     |++ .|++++.++..|+||||+|+..|+.+++++|++
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~---------------------Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATW---------------------LCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHH---------------------HHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence             367777777766666555554                     554 467777777777777777777777777777777


Q ss_pred             cCCCCC
Q 048601          375 FGADVE  380 (418)
Q Consensus       375 ~ga~~~  380 (418)
                      +|++++
T Consensus       148 ~ga~~~  153 (154)
T PHA02736        148 KGAQCK  153 (154)
T ss_pred             cCCCCC
Confidence            777653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=6.3e-21  Score=168.17  Aligned_cols=142  Identities=15%  Similarity=0.186  Sum_probs=99.7

Q ss_pred             ChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccC-CCCC
Q 048601          155 SSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR-DKEG  233 (418)
Q Consensus       155 ~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~  233 (418)
                      +.....++++.|+.  .|+.+++++|+++|++++......+..|.||||+|+..|+.+++++|+++++  +++.+ +..|
T Consensus        29 d~~~~~~lL~~A~~--~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA--DVN~~~~~~g  104 (300)
T PHA02884         29 NKICIANILYSSIK--FHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA--DVNRYAEEAK  104 (300)
T ss_pred             CcCCCCHHHHHHHH--cCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CcCcccCCCC
Confidence            44556666777776  6778888888888887776211114567888888888888888888887654  66664 4567


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Q 048601          234 RTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDV  305 (418)
Q Consensus       234 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  305 (418)
                      .||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++..+..  ..   .+..+.+|.++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~--~~---~~~~~~~~~~~  171 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD--NE---ISNFYKHPKKI  171 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--Cc---ccccccChhhh
Confidence            888888888888888888888888888888888888888887777777655542  22   23445566654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=5.9e-22  Score=161.11  Aligned_cols=133  Identities=23%  Similarity=0.321  Sum_probs=110.7

Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHHcCC--C-----CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCC
Q 048601          260 EAKGKDGKTSLHNAAANGDRRMVEMLIEMGA--D-----PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGE  332 (418)
Q Consensus       260 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~-----~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~  332 (418)
                      +..|..|.||||+|+..|+.  ++++...+.  +     ++.+|..|+||||+|+..|+.+.+                 
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~-----------------   71 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ-----------------   71 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH-----------------
Confidence            45678899999999999983  344433322  2     234688999999999999887643                 


Q ss_pred             HHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          333 LEGLESLLDKGASTNYCD-QYGLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       333 ~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                       +++++|+++|++++.++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+|||++|+..|+.+++++|+  +.
T Consensus        72 -e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll--~~  148 (154)
T PHA02736         72 -EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILR--AK  148 (154)
T ss_pred             -HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH--Hc
Confidence             34677999999999998 489999999999999999999998 49999999999999999999999999999999  45


Q ss_pred             Cccc
Q 048601          411 GTMV  414 (418)
Q Consensus       411 g~~~  414 (418)
                      |+++
T Consensus       149 ga~~  152 (154)
T PHA02736        149 GAQC  152 (154)
T ss_pred             CCCC
Confidence            5443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=5.6e-21  Score=147.09  Aligned_cols=144  Identities=28%  Similarity=0.328  Sum_probs=127.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      -.+.+|+..+.+..|+.||+..+ ..+|.+|.+|.||||.|+.+|+++||+.|+..|++.+.+...|+||||.||..++.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~a-n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKA-NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcc-ccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            35778999999999999998766 57899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601          280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI-EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH  358 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~  358 (418)
                      +++-+||++|+|+|.......||||+|+...+. ..+.+|                    |...++++...+..+.||++
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~L--------------------l~dryi~pg~~nn~eeta~~  203 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELL--------------------LHDRYIHPGLKNNLEETAFD  203 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHH--------------------hhccccChhhhcCccchHHH
Confidence            999999999999999998899999999987653 444443                    55677888888888999999


Q ss_pred             HHHHcC
Q 048601          359 IAAIKG  364 (418)
Q Consensus       359 ~A~~~g  364 (418)
                      +|-+.+
T Consensus       204 iARRT~  209 (228)
T KOG0512|consen  204 IARRTS  209 (228)
T ss_pred             HHHHhh
Confidence            997654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.1e-20  Score=145.48  Aligned_cols=141  Identities=28%  Similarity=0.308  Sum_probs=124.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 048601          236 PLHLAVNKTSIGCAKVLLESGAD-KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV  314 (418)
Q Consensus       236 ~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  314 (418)
                      .+.+|+..+.+..|+.|++..++ +|.+|.+|+||||.|+.+|+.+||+.|+..|++.+.+...|+||||.|+..+++++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            46789999999999999887654 79999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC-HHHHHHHH-HcCCCCCcCCCCCCcHhHH
Q 048601          315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGH-KHVVLLLI-EFGADVECQDNEGHAPLHL  392 (418)
Q Consensus       315 ~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll-~~ga~~~~~d~~g~t~l~~  392 (418)
                      +..                     |+.+|+|+|+......||||.||...+ ...+.+|+ ..+.++..++..+.||+++
T Consensus       146 a~~---------------------LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~i  204 (228)
T KOG0512|consen  146 AGR---------------------LLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDI  204 (228)
T ss_pred             HHH---------------------HHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHH
Confidence            877                     899999999999989999999998776 34455554 5678888899999999999


Q ss_pred             HHhcC
Q 048601          393 AVEGG  397 (418)
Q Consensus       393 A~~~g  397 (418)
                      |-+-+
T Consensus       205 ARRT~  209 (228)
T KOG0512|consen  205 ARRTS  209 (228)
T ss_pred             HHHhh
Confidence            97754

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=8.5e-19  Score=128.41  Aligned_cols=89  Identities=40%  Similarity=0.672  Sum_probs=64.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcC
Q 048601          270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC  349 (418)
Q Consensus       270 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~  349 (418)
                      ||+|++.|+.+++++|++.+.+++.    |+||||+|+..|+.+++++                     |+++|++++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~---------------------Ll~~g~~~~~~   55 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKL---------------------LLENGADINSQ   55 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHH---------------------HHHTTTCTT-B
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHH---------------------HHHhccccccc
Confidence            5777777777777777777766665    6677777666665555444                     67777778877


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC
Q 048601          350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD  383 (418)
Q Consensus       350 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d  383 (418)
                      +..|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus        56 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   56 DKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             STTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            7888888888888888888888888888887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=1.9e-19  Score=150.02  Aligned_cols=116  Identities=32%  Similarity=0.479  Sum_probs=99.7

Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Q 048601          224 ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCF  303 (418)
Q Consensus       224 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  303 (418)
                      .+.|.-|.-|.+|||+||+.|+..+++.|+..|+.+|..+....||||+|+.+||.++|+.|++..+|+|..+..|.|||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl  104 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence            46777888889999999999999999999999999888888888999999999999999999988888888888888888


Q ss_pred             HHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 048601          304 DVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA  360 (418)
Q Consensus       304 ~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  360 (418)
                      |+|+..|.-.+.+-                     |+..|+.++..++.|.|||..|
T Consensus       105 hyacfwgydqiaed---------------------li~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  105 HYACFWGYDQIAED---------------------LISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhhhhcHHHHHHH---------------------HHhccceeeecccCCCCchhhh
Confidence            88888887766655                     7888888888888888888876

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=7.4e-19  Score=166.49  Aligned_cols=189  Identities=29%  Similarity=0.354  Sum_probs=144.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccc-------CCCCccCCCCCCcHHHHHHH---cCCHHHHHHHHHcCCC----CC-CCCC
Q 048601          200 SELHVAAAFGRTEEISSLVRMKE-------YESLDCRDKEGRTPLHLAVN---KTSIGCAKVLLESGAD----KE-AKGK  264 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~-------~~~~~~~~~~~~t~L~~A~~---~~~~~~v~~Ll~~~~~----~~-~~~~  264 (418)
                      .++..|...+..+....++....       ...++.+...|.|.||.|.-   .++-++++.|++.-..    +. ....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            55666666666666665554321       23455666778888888775   3445777777765221    11 1224


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-----------------------CCCCCHHHHHHHcCCHHHHHHHhcC
Q 048601          265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-----------------------DRGRSCFDVARDKGHIEVLEVLQRG  321 (418)
Q Consensus       265 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------------~~g~t~l~~A~~~~~~~~~~~l~~~  321 (418)
                      .|.||||.|+.+.+.++|++|++.|||++.+.                       ..|..||-.||.-++.|++++    
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl----  258 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL----  258 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH----
Confidence            67888888888888888888888888876421                       135667777777776666655    


Q ss_pred             chHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCcHhHHHHhcCCc
Q 048601          322 EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD--VECQDNEGHAPLHLAVEGGRV  399 (418)
Q Consensus       322 ~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~t~l~~A~~~g~~  399 (418)
                                       |+++|+|++.+|..|+|.||..+..-..++..+++++|++  ...+|+.|.|||-+|++-|..
T Consensus       259 -----------------Ll~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  259 -----------------LLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             -----------------HHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH
Confidence                             8999999999999999999999999899999999999999  889999999999999999999


Q ss_pred             ceeehhhhcc
Q 048601          400 EPLLFIWLKQ  409 (418)
Q Consensus       400 ~~v~~Ll~~~  409 (418)
                      ++.+.+++.+
T Consensus       322 emf~~ile~~  331 (782)
T KOG3676|consen  322 EMFQHILERR  331 (782)
T ss_pred             HHHHHHHHhh
Confidence            9999999873

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=3.9e-18  Score=133.69  Aligned_cols=121  Identities=45%  Similarity=0.766  Sum_probs=65.3

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC
Q 048601          264 KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG  343 (418)
Q Consensus       264 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g  343 (418)
                      .+|.||||+|+..|+.+++++|++.|.+.+..+..|.+|++.|+..+..+++++                     |+++|
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~---------------------ll~~~   63 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL---------------------LLEKG   63 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHH---------------------HHHcC
Confidence            344455555555555555555555554444444455555555444444333332                     44444


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehh
Q 048601          344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI  405 (418)
Q Consensus       344 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~L  405 (418)
                      ++++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+++|+..++.+++++|
T Consensus        64 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          64 ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            44455555555666666666666666666666666665666666666666666666665555

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=3.3e-18  Score=125.26  Aligned_cols=89  Identities=39%  Similarity=0.627  Sum_probs=77.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHH
Q 048601          202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM  281 (418)
Q Consensus       202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  281 (418)
                      ||+|+..|+.+++++|++.+.  +++.    |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~--~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA--DINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS--TTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcC--CCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            789999999999999998554  3333    8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCccC
Q 048601          282 VEMLIEMGADPTIKD  296 (418)
Q Consensus       282 v~~Ll~~g~~~~~~~  296 (418)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=1.6e-17  Score=130.11  Aligned_cols=122  Identities=47%  Similarity=0.739  Sum_probs=74.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601          230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK  309 (418)
Q Consensus       230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  309 (418)
                      +..|.||||+|++.++.+++++|++.+.+.+..+..|.||||+|+..++.+++++|++.|++++..+..|.||+|.|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            34566666666666666666666666665555566666666666666666666666666655555555666666666555


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHH
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL  372 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  372 (418)
                      ++.+++++                     |+++|.+++..+..|.||+++|...++.+++++|
T Consensus        84 ~~~~~~~~---------------------L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          84 GNLDVVKL---------------------LLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CcHHHHHH---------------------HHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            55444443                     5555555666666666666666666666666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=4.8e-18  Score=161.06  Aligned_cols=183  Identities=26%  Similarity=0.322  Sum_probs=145.5

Q ss_pred             cCCCCchHHHHHHHc---CCHHHHHHHHhcccCCCC---ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-----
Q 048601          194 KTKDGWSELHVAAAF---GRTEEISSLVRMKEYESL---DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK-----  262 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~---~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-----  262 (418)
                      +..-|+|.||.|..+   ++.++++.|++..+.-..   ......|.||||.|+.+.+.++|++|++.|||++++     
T Consensus       139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F  218 (782)
T KOG3676|consen  139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF  218 (782)
T ss_pred             ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc
Confidence            566788999998863   555888888876652111   123456999999999999999999999999998753     


Q ss_pred             ----C--------------CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchH
Q 048601          263 ----G--------------KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV  324 (418)
Q Consensus       263 ----~--------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  324 (418)
                          |              ..|+.||.+||..++.|++++|+++|+|++.+|..|.|.||..+..-..+           
T Consensus       219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~-----------  287 (782)
T KOG3676|consen  219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTE-----------  287 (782)
T ss_pred             cCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHH-----------
Confidence                1              13778999999999999999999999999999999999999988774444           


Q ss_pred             HHHHHcCCHHHHHHHHhCCCC--CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC--------------CCCCcCCCC--C
Q 048601          325 LTAARRGELEGLESLLDKGAS--TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG--------------ADVECQDNE--G  386 (418)
Q Consensus       325 ~~a~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--------------a~~~~~d~~--g  386 (418)
                                +...++++|++  ...++..|-|||..|+.-|..++.+.+++..              .+.+..|..  -
T Consensus       288 ----------My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~  357 (782)
T KOG3676|consen  288 ----------MYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNE  357 (782)
T ss_pred             ----------HHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccch
Confidence                      44558899998  7788999999999999999999999999971              233444433  3


Q ss_pred             CcHhHHHHhcC
Q 048601          387 HAPLHLAVEGG  397 (418)
Q Consensus       387 ~t~l~~A~~~g  397 (418)
                      .++|.+.+.+.
T Consensus       358 ~SvLeivvyg~  368 (782)
T KOG3676|consen  358 NSVLEIVVYGI  368 (782)
T ss_pred             hhhhhhhhcCC
Confidence            46777777653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=8.3e-19  Score=146.20  Aligned_cols=111  Identities=31%  Similarity=0.381  Sum_probs=97.8

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      -|..|.+|||+|++.|+..+++.|+..+.  .+|..+....||||+|+..||.++|+.|++..+|+|..++.|.||||||
T Consensus        30 gddhgfsplhwaakegh~aivemll~rga--rvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhya  107 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVEMLLSRGA--RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHHHHHhccc--ccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhh
Confidence            67788899999999999999999987665  6677888888999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601          274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA  306 (418)
Q Consensus       274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  306 (418)
                      |..|...+.+-|+..|+-++..+++|.||+..|
T Consensus       108 cfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            999999999999999999998899999998876

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=7.6e-16  Score=105.89  Aligned_cols=103  Identities=28%  Similarity=0.394  Sum_probs=90.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR  280 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  280 (418)
                      -+.+++++|.++-|+..+..+.  +++.. ..|++|||+|+..|++++++||+..|++++.+|.+|-|||..|+..||.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~--nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGL--NVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccc--cHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            4678999999999999886553  45543 37999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601          281 MVEMLIEMGADPTIKDDRGRSCFDVA  306 (418)
Q Consensus       281 ~v~~Ll~~g~~~~~~~~~g~t~l~~A  306 (418)
                      +|++|+++|++-.....+|.+.+..+
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999888888887765543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=9.6e-16  Score=105.41  Aligned_cols=103  Identities=31%  Similarity=0.453  Sum_probs=80.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCc
Q 048601          269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNY  348 (418)
Q Consensus       269 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~  348 (418)
                      -+.+++++|..+-|+-....|-++|..- .|++|||+|+..|..+++++                     |+..|++++.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilef---------------------li~iGA~i~~   62 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEF---------------------LISIGANIQD   62 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHH---------------------HHHhccccCC
Confidence            4567778888888888887777766553 67888888777666555544                     7888888888


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601          349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA  393 (418)
Q Consensus       349 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  393 (418)
                      +|++|-|||--|+..||.++|++|+++|||...+...|.+.++.+
T Consensus        63 kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   63 KDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             ccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            888888888888888999999999999988888888887665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=1.9e-14  Score=125.39  Aligned_cols=133  Identities=37%  Similarity=0.561  Sum_probs=110.0

Q ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHH
Q 048601          261 AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLL  340 (418)
Q Consensus       261 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll  340 (418)
                      ..+..+.++++.++..+..+++++++..|++++.++..|.||+|+|+..++.                ..++.++++.|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~----------------~~~~~~~~~~ll  131 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP----------------PEGNIEVAKLLL  131 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc----------------ccchHHHHHHHH
Confidence            3445567788888888888888888888888877888888888887777763                233455555688


Q ss_pred             hCCC---CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601          341 DKGA---STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       341 ~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~  409 (418)
                      +.|+   ..+.++..|.||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.+++++++...
T Consensus       132 ~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            8888   55666999999999999999999999999999999999999999999999999999999998643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.61  E-value=3.4e-14  Score=123.76  Aligned_cols=130  Identities=41%  Similarity=0.609  Sum_probs=116.8

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC-----HHHHHHHHHcCC---CCCccCC
Q 048601          226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD-----RRMVEMLIEMGA---DPTIKDD  297 (418)
Q Consensus       226 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~  297 (418)
                      ....+..+.++++.++..+..+++++++..|++++.++..|.||||+|+..|+     .+++++|++.|+   ..+.++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            34566778999999999999999999999999999999999999999999999     999999999999   5566799


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601          298 RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       298 ~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                      .|.||||+|+..|+.++++.                     |++.|++++..+..|.|++++|+..++.++++++++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~---------------------ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVEL---------------------LLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHH---------------------HHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999988887776655                     78889999999999999999999999999999999976

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.58  E-value=2.2e-15  Score=98.72  Aligned_cols=55  Identities=53%  Similarity=0.816  Sum_probs=33.6

Q ss_pred             HHhCC-CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601          339 LLDKG-ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA  393 (418)
Q Consensus       339 Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  393 (418)
                      |+++| ++++.+|..|.||||+|+.+|+.++|++|++.|+|++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999999999999999999999999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=5.7e-14  Score=117.45  Aligned_cols=124  Identities=27%  Similarity=0.293  Sum_probs=113.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCccHHHHHHHc
Q 048601          198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK-GKDGKTSLHNAAAN  276 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~  276 (418)
                      ...||..++..|+.+....|+....  .++.+|..|.|+|..|+..|+.+++++|++.|+|+|.. ...++||||+|+.+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr--~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVR--QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhh--hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            4579999999999999999996533  67899999999999999999999999999999999875 45689999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCch
Q 048601          277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA  323 (418)
Q Consensus       277 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  323 (418)
                      |+.++.++|++.|+.....+.-|+|+-.+|+.-|+.++|..+.++-+
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999865443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=6.5e-15  Score=96.06  Aligned_cols=54  Identities=44%  Similarity=0.788  Sum_probs=44.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601          353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       353 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  406 (418)
                      |+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999886

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.50  E-value=1.5e-13  Score=136.74  Aligned_cols=82  Identities=37%  Similarity=0.607  Sum_probs=55.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 048601          236 PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL  315 (418)
Q Consensus       236 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  315 (418)
                      .|+.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            46666666777777777776766666666667777777777777777777666666666666666666666666655555


Q ss_pred             HH
Q 048601          316 EV  317 (418)
Q Consensus       316 ~~  317 (418)
                      ++
T Consensus       165 ~~  166 (664)
T PTZ00322        165 QL  166 (664)
T ss_pred             HH
Confidence            54

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=8.2e-14  Score=90.84  Aligned_cols=54  Identities=48%  Similarity=0.764  Sum_probs=33.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI  286 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  286 (418)
                      |.||||+|++.|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456677777777777777777667666666666777777777777777766664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=4.2e-13  Score=133.45  Aligned_cols=105  Identities=36%  Similarity=0.448  Sum_probs=97.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      ..|+.|+..|+.+.++.|++.+.  +++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Ga--din~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGA--DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            56899999999999999998665  7889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-------CCCCCccCCCCCCHHHHH
Q 048601          280 RMVEMLIEM-------GADPTIKDDRGRSCFDVA  306 (418)
Q Consensus       280 ~~v~~Ll~~-------g~~~~~~~~~g~t~l~~A  306 (418)
                      +++++|+++       |++.+..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            999999999       888888888888876544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=7.8e-14  Score=91.32  Aligned_cols=55  Identities=45%  Similarity=0.662  Sum_probs=22.1

Q ss_pred             HHHcC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601          252 LLESG-ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA  306 (418)
Q Consensus       252 Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  306 (418)
                      |+++| ++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34455 56666666666666666666666666666666666666666666666654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=8.8e-13  Score=110.44  Aligned_cols=121  Identities=28%  Similarity=0.390  Sum_probs=106.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCC
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTI-KDDRGRSCFDVARDKGH  311 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~  311 (418)
                      -..||.-++..|..+....|+..--++|.+|..|.|+|..|+..|+.++|++|++.|+|+|. ++..+.||||.|+.+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            46789999999999999999987667899999999999999999999999999999999985 66778999999888877


Q ss_pred             HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 048601          312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE  374 (418)
Q Consensus       312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  374 (418)
                      .++-+.                     |++.|+.....+.-|+|+-+.|+.-||-++|..+-.
T Consensus        92 ~dvcrl---------------------lldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   92 QDVCRL---------------------LLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             chHHHH---------------------HHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            665544                     899999999999999999999999999999877643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=5.2e-13  Score=120.54  Aligned_cols=115  Identities=26%  Similarity=0.264  Sum_probs=96.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHH
Q 048601          202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM  281 (418)
Q Consensus       202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  281 (418)
                      |.-|+..|-+|+|+.++..-.  +....+..|-|+||-|+..||.+||+||++.|+++|..|.+||||||+|+..++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~--DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVT--DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhc--CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            345888899999999985443  667788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCc-cCCCCCCHHHHHH--HcCCHHHHHHH
Q 048601          282 VEMLIEMGADPTI-KDDRGRSCFDVAR--DKGHIEVLEVL  318 (418)
Q Consensus       282 v~~Ll~~g~~~~~-~~~~g~t~l~~A~--~~~~~~~~~~l  318 (418)
                      ++.|++.|+-+-. +-.++.||..-+-  +.|..+|.+||
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHH
Confidence            9999999987653 3455677776653  35667777776

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=4.3e-13  Score=121.08  Aligned_cols=113  Identities=28%  Similarity=0.360  Sum_probs=90.3

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 048601          272 NAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ  351 (418)
Q Consensus       272 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~  351 (418)
                      -|+..|-+++|+-.+..-.|+...+..|.|+||.|+..||.+||++                     |++.|+++|..|.
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkF---------------------Li~~ganVNa~DS  614 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKF---------------------LIEFGANVNAADS  614 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHH---------------------HHhcCCcccCccC
Confidence            4777889999998888777888888889999999988888777766                     8889999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCcHhHHHH--hcCCcceeehh
Q 048601          352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQ-DNEGHAPLHLAV--EGGRVEPLLFI  405 (418)
Q Consensus       352 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~--~~g~~~~v~~L  405 (418)
                      +||||||+|+.+++..+++.|++.|+-|... -.++.||.+-+-  +.|..++.+||
T Consensus       615 dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  615 DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHH
Confidence            9999999999999999999999998876543 345667766542  45666666666

>PF13606 Ank_3: Ankyrin repeat

Probab=99.00  E-value=6.3e-10  Score=61.87  Aligned_cols=30  Identities=50%  Similarity=0.758  Sum_probs=27.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 048601          352 YGLTPLHIAAIKGHKHVVLLLIEFGADVEC  381 (418)
Q Consensus       352 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  381 (418)
                      +|+||||+|+++|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999873

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.97  E-value=2.9e-10  Score=101.86  Aligned_cols=87  Identities=30%  Similarity=0.351  Sum_probs=82.8

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCcHhHHHHhcCCccee
Q 048601          324 VLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF-GADVECQDNEGHAPLHLAVEGGRVEPL  402 (418)
Q Consensus       324 ~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~g~~~~v  402 (418)
                      +++|++.|++..++-+.-.|.|++..|.+.+|+||.|+..|+.+++++|++. +.+++.+|.+|+|||+-|...+|.+++
T Consensus       510 ~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~  589 (622)
T KOG0506|consen  510 VMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVV  589 (622)
T ss_pred             hhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHH
Confidence            7889999999999999999999999999999999999999999999999986 789999999999999999999999999


Q ss_pred             ehhhhccC
Q 048601          403 LFIWLKQW  410 (418)
Q Consensus       403 ~~Ll~~~~  410 (418)
                      ++|-+.+.
T Consensus       590 k~L~~~~~  597 (622)
T KOG0506|consen  590 KLLEEAQY  597 (622)
T ss_pred             HHHHHHhc
Confidence            99986665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.96  E-value=5.1e-10  Score=106.78  Aligned_cols=95  Identities=26%  Similarity=0.372  Sum_probs=71.8

Q ss_pred             HHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601          214 ISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK-DGKTSLHNAAANGDRRMVEMLIEMGADP  292 (418)
Q Consensus       214 v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  292 (418)
                      ++-+++.......+..|..|+|+||+|+..+..++++||+++|+++..+|. .|+||||.|+..|+.+++-.||.+|+.+
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            444444444445667778888888888888888888888888888877774 5788888888888888888888888888


Q ss_pred             CccCCCCCCHHHHHHH
Q 048601          293 TIKDDRGRSCFDVARD  308 (418)
Q Consensus       293 ~~~~~~g~t~l~~A~~  308 (418)
                      ..+|..|.+||+..++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            8888888888877665

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.94  E-value=1.8e-09  Score=97.34  Aligned_cols=87  Identities=36%  Similarity=0.476  Sum_probs=79.1

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCccee
Q 048601          324 VLTAARRGELEGLESLLDKGASTNYCDQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPL  402 (418)
Q Consensus       324 ~~~a~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v  402 (418)
                      ++..++.|++++.--|+..|+++|..+. .|.||||.|++.|+..-+++|+-+|||++..|..|.||++||-.+||-++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            5667778888888889999999998775 689999999999999999999999999999999999999999999999999


Q ss_pred             ehhhhccC
Q 048601          403 LFIWLKQW  410 (418)
Q Consensus       403 ~~Ll~~~~  410 (418)
                      +-|++-++
T Consensus       217 eRl~e~~y  224 (669)
T KOG0818|consen  217 ERLVEIQY  224 (669)
T ss_pred             HHHHHHHH
Confidence            88876554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.93  E-value=1.6e-09  Score=62.20  Aligned_cols=33  Identities=52%  Similarity=0.835  Sum_probs=30.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Q 048601          352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN  384 (418)
Q Consensus       352 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  384 (418)
                      +|+||||+|+.+|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            489999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.90  E-value=7.4e-10  Score=105.74  Aligned_cols=85  Identities=29%  Similarity=0.403  Sum_probs=76.5

Q ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC-CCCcHHHHHHHcCCHHHHH
Q 048601          292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ-YGLTPLHIAAIKGHKHVVL  370 (418)
Q Consensus       292 ~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~  370 (418)
                      .|.+|..|+++||+|+..+..++++|                     |+.+|++++.+|. .|+||||.|+.+|+++++.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~w---------------------LlqhGidv~vqD~ESG~taLHRaiyyG~idca~  103 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRW---------------------LLQHGIDVFVQDEESGYTALHRAIYYGNIDCAS  103 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHH---------------------HHhcCceeeeccccccchHhhHhhhhchHHHHH
Confidence            57889999999999988777666655                     8999999999886 6999999999999999999


Q ss_pred             HHHHcCCCCCcCCCCCCcHhHHHHhcC
Q 048601          371 LLIEFGADVECQDNEGHAPLHLAVEGG  397 (418)
Q Consensus       371 ~Ll~~ga~~~~~d~~g~t~l~~A~~~g  397 (418)
                      +|+.+|+....+|++|.+||+.-.+-.
T Consensus       104 lLL~~g~SL~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  104 LLLSKGRSLRIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             HHHhcCCceEEecccCCCHHHHHhhcc
Confidence            999999999999999999999988743

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=98.87  E-value=4e-09  Score=84.25  Aligned_cols=89  Identities=27%  Similarity=0.532  Sum_probs=74.3

Q ss_pred             cccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCC-CCCCCC
Q 048601            5 LAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIP-PTFPRS   83 (418)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p-~~~~~~   83 (418)
                      |+++| ++.|..++..++++.++++|. ..-++.||++||.|+.|+|||..|.|.|.+...++++|+...+-| ++  ..
T Consensus         3 veisp-~~~fy~Plt~~ske~~sv~Nn-spepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapd--fK   78 (242)
T COG5066           3 VEISP-QTTFYVPLTNKSKEMFSVQNN-SPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPD--FK   78 (242)
T ss_pred             eEecC-ceEEecccccccceeeEeecC-CCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCC--cc
Confidence            45555 667777899999999999999 666999999999999999999999999999999999999876544 33  34


Q ss_pred             CchHHHHHHhccCC
Q 048601           84 PSDRFLIKATVFGS   97 (418)
Q Consensus        84 ~~~~~l~~a~~~~~   97 (418)
                      +.+.||+.+..++.
T Consensus        79 CrdKFLiqs~~~~~   92 (242)
T COG5066          79 CRDKFLIQSYRFDW   92 (242)
T ss_pred             ccceeEEEEeccCh
Confidence            45888888777763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.84  E-value=4.3e-09  Score=94.50  Aligned_cols=93  Identities=34%  Similarity=0.390  Sum_probs=82.8

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC
Q 048601          264 KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG  343 (418)
Q Consensus       264 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g  343 (418)
                      .++...+++|+..|+...++-+.-.|.|++.+|.+.+|+||+|+..|+.+++++|                    |-.-+
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl--------------------~~~~k  563 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFL--------------------LNACK  563 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHH--------------------HHHHc
Confidence            4456789999999999999999999999999999999999999998888887774                    33347


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601          344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       344 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                      .+++.+|++|+|||.-|...+|.+++++|-+.-
T Consensus       564 v~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  564 VDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             CCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            899999999999999999999999999998864

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=6.5e-09  Score=89.37  Aligned_cols=92  Identities=27%  Similarity=0.537  Sum_probs=78.2

Q ss_pred             cccccccc-ceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCC
Q 048601            2 ERLLAVSE-QEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTF   80 (418)
Q Consensus         2 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~   80 (418)
                      +++|.++| .+|.|.++...+..+.++|+|. ++.+++||++||.|.+|+|||..|+|.|..+..+.+.+++....|+.+
T Consensus         6 ~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~-t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~   84 (218)
T KOG0439|consen    6 ESLLEIEPSDELVFPLPLNEQVKCSLTLKNP-TKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPDF   84 (218)
T ss_pred             cCccccCCCceEEeccCCCceEEEEEEEecC-CCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchhh
Confidence            46889998 7899999999999999999999 889999999999999999999999999999999999888865555553


Q ss_pred             CCCCchHHHHHHhccC
Q 048601           81 PRSPSDRFLIKATVFG   96 (418)
Q Consensus        81 ~~~~~~~~l~~a~~~~   96 (418)
                      .  ..+.|++.....+
T Consensus        85 ~--~r~kF~v~~~~~~   98 (218)
T KOG0439|consen   85 K--SRHKFLIQSLKAP   98 (218)
T ss_pred             c--ccceEEEEEEecC
Confidence            2  3456666555555

>PF13606 Ank_3: Ankyrin repeat

Probab=98.83  E-value=5.3e-09  Score=58.11  Aligned_cols=28  Identities=50%  Similarity=0.740  Sum_probs=16.7

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 048601          266 GKTSLHNAAANGDRRMVEMLIEMGADPT  293 (418)
Q Consensus       266 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  293 (418)
                      |+||||+|+..|+.+++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666665554

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=98.83  E-value=1.7e-08  Score=76.52  Aligned_cols=87  Identities=26%  Similarity=0.544  Sum_probs=67.5

Q ss_pred             cccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCCC
Q 048601            5 LAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRS   83 (418)
Q Consensus         5 ~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~~   83 (418)
                      |.++|+ ++.|..+.++...+.++|+|. +..+++||++||++..|.|+|..|+|.|..+..+.+.+.+....+...   
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~-s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~~---   77 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNP-SDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSNK---   77 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE--SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTST---
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECC-CCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCCC---
Confidence            678997 788999999999999999999 666999999999999999999999999999999999998876543321   


Q ss_pred             CchHHHHHHhcc
Q 048601           84 PSDRFLIKATVF   95 (418)
Q Consensus        84 ~~~~~l~~a~~~   95 (418)
                      ..+.|.+.++..
T Consensus        78 ~~dkf~I~~~~~   89 (109)
T PF00635_consen   78 KKDKFLIQSIVV   89 (109)
T ss_dssp             SSEEEEEEEEEE
T ss_pred             CCCEEEEEEEEc
Confidence            145555555544

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1.2e-08  Score=93.47  Aligned_cols=119  Identities=20%  Similarity=0.284  Sum_probs=85.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCccHHHHHHHcCCH
Q 048601          202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGAD--KEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      +..|+..+++--++..-  ..+..+-.++.+.++.||+|++.|+-++|++++++|..  ++..++.|.|+||.|+..++.
T Consensus       870 il~av~~~D~~klqE~h--~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETH--LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHH--hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            44455555432222222  22335566777888888888888888888888888753  456677888888888888888


Q ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 048601          280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE  322 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  322 (418)
                      .+..+|++.|+.+..+|..|.||-.-|-..|..+++.||....
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            8888888888888888888888888888888888888876543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.81  E-value=1.2e-08  Score=93.56  Aligned_cols=128  Identities=22%  Similarity=0.266  Sum_probs=102.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcC
Q 048601          270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC  349 (418)
Q Consensus       270 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~  349 (418)
                      +..|+..+++--+.-....|.++-.++.+..+.||+|+..|+-++|+|++++.+-.             |      ++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e-------------l------ld~~  930 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE-------------L------LDMA  930 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH-------------H------HHHH
Confidence            44556666555455556678888888888889999999998888888865555431             1      2445


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccccc
Q 048601          350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       350 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~~  416 (418)
                      +..|.|+||.|+..++..+.++|++.|+.....|..|.||-.-|-+.|+.+++-||-..|..-.+.|
T Consensus       931 de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~yk~i~~  997 (1004)
T KOG0782|consen  931 DETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNYKVIGH  997 (1004)
T ss_pred             hhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhchhhccc
Confidence            6779999999999999999999999999999999999999999999999999999987776655543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.78  E-value=3.2e-08  Score=89.41  Aligned_cols=93  Identities=37%  Similarity=0.490  Sum_probs=78.4

Q ss_pred             ccCCCCCCcH------HHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q 048601          227 DCRDKEGRTP------LHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRG  299 (418)
Q Consensus       227 ~~~~~~~~t~------L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  299 (418)
                      ..+|.+|.+.      ||..++.|+.+..-.|+..|+++|... ..|.||||.|++.|+..-+++|+=+|+|++..|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            3456666654      888889999998888888899988765 568899999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHh
Q 048601          300 RSCFDVARDKGHIEVLEVLQ  319 (418)
Q Consensus       300 ~t~l~~A~~~~~~~~~~~l~  319 (418)
                      .||+.+|-..||.++.+.|.
T Consensus       201 mtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHH
Confidence            99999999999988887773

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.73  E-value=2.4e-08  Score=57.28  Aligned_cols=31  Identities=42%  Similarity=0.693  Sum_probs=19.6

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 048601          266 GKTSLHNAAANGDRRMVEMLIEMGADPTIKD  296 (418)
Q Consensus       266 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  296 (418)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5666666666666666666666666666544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.58  E-value=3.2e-07  Score=88.96  Aligned_cols=133  Identities=23%  Similarity=0.330  Sum_probs=98.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcccC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048601          198 GWSELHVAAAFGRTEEISSLVRMKEY--ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA  275 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  275 (418)
                      +.--+-.|+.+|+.-.|+..++....  .++|..|.-|+++|+.|+.+.+.+++++|++.+...       ..+|.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            44567789999999999999987664  567888999999999999999999999999887654       348888999


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Q 048601          276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLT  355 (418)
Q Consensus       276 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t  355 (418)
                      .|..++|+.++.+.........                                            .+..--.....+-|
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~--------------------------------------------~~d~~~~~ft~dit  133 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLER--------------------------------------------SGDANSPHFTPDIT  133 (822)
T ss_pred             HHHHHHHHHHHhcccccchhcc--------------------------------------------ccccCcccCCCCcc
Confidence            9999999999986433221110                                            00011122234678


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCc
Q 048601          356 PLHIAAIKGHKHVVLLLIEFGADVEC  381 (418)
Q Consensus       356 ~L~~A~~~g~~~~v~~Ll~~ga~~~~  381 (418)
                      ||+.||..++.||+++|+.+|+.+..
T Consensus       134 PliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  134 PLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            88888888888888888888877644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.9e-07  Score=85.53  Aligned_cols=89  Identities=31%  Similarity=0.502  Sum_probs=75.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      .|+|+++...+.+-+...+.......++..|..|.||||+|+..|+.+.++.|+.+|+++..++..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            35888888888877776555445567888899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHc
Q 048601          280 RMVEMLIEM  288 (418)
Q Consensus       280 ~~v~~Ll~~  288 (418)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            887777653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.54  E-value=1.2e-07  Score=87.50  Aligned_cols=86  Identities=33%  Similarity=0.447  Sum_probs=76.9

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCC--c--CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCc
Q 048601          324 VLTAARRGELEGLESLLDKGASTN--Y--CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV  399 (418)
Q Consensus       324 ~~~a~~~g~~~~~~~Ll~~g~~~~--~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~  399 (418)
                      ++.|....++..+-.|+.+|....  .  .+..|+|+||+||..|++.+.++|+=+|+|+..+|..|+|||.||-++|.-
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            677888899999999999986543  2  345679999999999999999999999999999999999999999999999


Q ss_pred             ceeehhhhccCC
Q 048601          400 EPLLFIWLKQWG  411 (418)
Q Consensus       400 ~~v~~Ll~~~~g  411 (418)
                      +++..|+  ++|
T Consensus       708 ec~d~ll--q~g  717 (749)
T KOG0705|consen  708 ECIDVLL--QYG  717 (749)
T ss_pred             HHHHHHH--HcC
Confidence            9999999  555

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.54  E-value=8.7e-08  Score=75.96  Aligned_cols=69  Identities=26%  Similarity=0.311  Sum_probs=64.2

Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCC
Q 048601          343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG-ADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG  411 (418)
Q Consensus       343 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g  411 (418)
                      +.++|.+|..|+||++.|+..|.-+.|.||+++| +++...|..|.+++.+|-++|+.++|+.|.++...
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4589999999999999999999999999999999 89999999999999999999999999999876443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.48  E-value=4.5e-07  Score=83.72  Aligned_cols=90  Identities=29%  Similarity=0.443  Sum_probs=65.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCc--cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          202 LHVAAAFGRTEEISSLVRMKEYESLD--CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       202 L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      |..|+...++..+-.||.++....++  ..+.+|+|+||+||+.|++.+.++|+-+|+|+..+|..|.|+|.||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            45566666777777777665533333  3445667888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCC
Q 048601          280 RMVEMLIEMGAD  291 (418)
Q Consensus       280 ~~v~~Ll~~g~~  291 (418)
                      +++..|+.+|..
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            888888887754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.47  E-value=4.4e-07  Score=79.64  Aligned_cols=67  Identities=30%  Similarity=0.507  Sum_probs=58.9

Q ss_pred             hHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601          323 AVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       323 ~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      .+..|++.|+++.+++|++.|.++|.+|+...+||.+|+..||.++|++|+++||-...-.-.|..+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            4668999999999999999999999999999999999999999999999999999655444455544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.43  E-value=1.8e-07  Score=85.67  Aligned_cols=70  Identities=33%  Similarity=0.427  Sum_probs=63.1

Q ss_pred             hCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          341 DKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       341 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                      +.+..++..|..|+||||.|+..||...++.|+..||++..+|+.|++||+.|+..|+.+++..++.+..
T Consensus        43 ~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   43 KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHHhH
Confidence            3456788899999999999999999999999999999999999999999999999999998877765443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.35  E-value=2.5e-06  Score=82.97  Aligned_cols=91  Identities=21%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------CCCC
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADK----------EAKG  263 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~----------~~~~  263 (418)
                      .|.-|+++|+.|+.+.+.|++++|+++..    ..     ..+|.+|+..|..++|+.++.+....          ...-
T Consensus        58 ~d~lGr~al~iai~nenle~~eLLl~~~~----~~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~f  128 (822)
T KOG3609|consen   58 RDPLGRLALHIAIDNENLELQELLLDTSS----EE-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHF  128 (822)
T ss_pred             cChHhhhceecccccccHHHHHHHhcCcc----cc-----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccC
Confidence            55556666666666666666666664322    11     34555666666666666666543221          1112


Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 048601          264 KDGKTSLHNAAANGDRRMVEMLIEMGADPT  293 (418)
Q Consensus       264 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  293 (418)
                      .-+-|||++||..+|.||+++|+.+|+.+.
T Consensus       129 t~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  129 TPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             CCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            235577777777777777777777776653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.22  E-value=1.6e-06  Score=86.60  Aligned_cols=88  Identities=32%  Similarity=0.513  Sum_probs=82.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601          230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK  309 (418)
Q Consensus       230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  309 (418)
                      -..|.|+||.|+..|..-++++|+++|+++|..|..|.+|||.+...|+...+..|+++|++.+..+..|++++++|...
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCHHHHHH
Q 048601          310 GHIEVLEV  317 (418)
Q Consensus       310 ~~~~~~~~  317 (418)
                      .+.+++-.
T Consensus       733 ~~~d~~~l  740 (785)
T KOG0521|consen  733 ANADIVLL  740 (785)
T ss_pred             ccccHHHH
Confidence            77666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.20  E-value=1.6e-06  Score=86.20  Aligned_cols=126  Identities=25%  Similarity=0.253  Sum_probs=93.8

Q ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHH
Q 048601          261 AKGKDGKTSLHNAAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESL  339 (418)
Q Consensus       261 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~L  339 (418)
                      .....|.+.+|+++..+..-+++.+++. |......|..|...+|.++ .++.+++-.+                    .
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll--------------------~  627 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLP--------------------I  627 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEE--------------------E
Confidence            3445678888888888888888888876 5555666666777777733 3344433321                    2


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------cCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE------CQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       340 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                      .-.|..++.+|..|+||||+|+.+|+..++..|++.|++..      ..+..|.|+-++|..+|+..+.-+|-+
T Consensus       628 ~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  628 SADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             eecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            34677889999999999999999999999999998876543      334568899999999999888877754

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.20  E-value=4e-06  Score=66.75  Aligned_cols=67  Identities=24%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG-ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD  291 (418)
Q Consensus       225 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  291 (418)
                      ++|.+|..|+|+++.|+..|..+.+.||+.+| +.+...|..|.+++.+|-+.|..++++.|.+.-.+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            67788888888888888888888888888888 77888888888888888888888888888876433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.18  E-value=5.2e-06  Score=73.07  Aligned_cols=85  Identities=28%  Similarity=0.321  Sum_probs=67.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD  278 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~  278 (418)
                      .--|+.|++.|+.+.|++|++.+  .++|..|....+||.+|+-.||.++|++|+++|+-......+|..++. ++.+  
T Consensus        37 f~elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y-gaLn--  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY-GALN--  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh-hhhh--
Confidence            34589999999999999999854  488999999999999999999999999999999987766667766644 4443  


Q ss_pred             HHHHHHHHHc
Q 048601          279 RRMVEMLIEM  288 (418)
Q Consensus       279 ~~~v~~Ll~~  288 (418)
                      ..|=+.|+++
T Consensus       112 d~IR~mllsy  121 (516)
T KOG0511|consen  112 DRIRRMLLSY  121 (516)
T ss_pred             HHHHHHHHHH
Confidence            3344455554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.17  E-value=9.7e-07  Score=88.09  Aligned_cols=110  Identities=30%  Similarity=0.400  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHH----hcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHH
Q 048601          298 RGRSCFDVARDKGHIEVLEVL----QRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI  373 (418)
Q Consensus       298 ~g~t~l~~A~~~~~~~~~~~l----~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  373 (418)
                      .+.++.-++....+...+.|.    .....++.|+..|..-++++|+++|+++|..|..|+||+|.+...|+...+..|+
T Consensus       630 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll  709 (785)
T KOG0521|consen  630 DGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLL  709 (785)
T ss_pred             CccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhc
Confidence            455666666665555555553    2345677788888888999999999999999999999999999999999999999


Q ss_pred             HcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          374 EFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       374 ~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                      ++|++.+..+..|++|+++|.+..+.+++-++..
T Consensus       710 ~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  710 KRGADPNAFDPDGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             cccccccccCccCcchhhHHhhhccccHHHHHhh
Confidence            9999999999999999999988877777766543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.89  E-value=1.7e-05  Score=79.11  Aligned_cols=126  Identities=25%  Similarity=0.317  Sum_probs=100.1

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCccHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL-ESGADKEAKGKDGKTSLHN  272 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~  272 (418)
                      ....|.+-+|+++..+..-.++.+++.. +......|.+|.-.+|+++ .++.++.-+++ -+|..++.+|..|+||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~-~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWA-GSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhccc-ccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccch
Confidence            4567889999999999999999999751 1234556777888888854 45555554444 5688899999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHhcC
Q 048601          273 AAANGDRRMVEMLIEMGADPT------IKDDRGRSCFDVARDKGHIEVLEVLQRG  321 (418)
Q Consensus       273 A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~~l~~~  321 (418)
                      |+..|+..++..|.+.|++..      .....|.|+-..|..+|+..+.-+|.+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999998887644      3345689999999999999999988554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.61  E-value=7.3e-05  Score=68.45  Aligned_cols=64  Identities=31%  Similarity=0.434  Sum_probs=56.0

Q ss_pred             CCHHHHHHHHhCCCCCCc------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHH
Q 048601          331 GELEGLESLLDKGASTNY------CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV  394 (418)
Q Consensus       331 g~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  394 (418)
                      .....+++|.+++++.|.      .+....|+||+|+..|..++|.+||+.|+|+..+|..|+||++++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            346788999999888764      3445689999999999999999999999999999999999999877

>smart00248 ANK ankyrin repeats

Probab=97.21  E-value=0.00074  Score=36.49  Aligned_cols=28  Identities=54%  Similarity=0.820  Sum_probs=24.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 048601          353 GLTPLHIAAIKGHKHVVLLLIEFGADVE  380 (418)
Q Consensus       353 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  380 (418)
                      |.||+|+|+..++.++++.|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.15  E-value=0.0082  Score=48.25  Aligned_cols=137  Identities=18%  Similarity=0.138  Sum_probs=87.1

Q ss_pred             HHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHH
Q 048601          127 LLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAA  206 (418)
Q Consensus       127 ~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~  206 (418)
                      .|..|++.+-+.++++.-+....     .......++..|++  ..+.|||+|.-++-.         -.+-.+.+..|.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~-----~~~~~q~LFElAC~--~qkydiV~WI~qnL~---------i~~~~~iFdIA~  112 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLEN-----ERYLNQELFELACE--EQKYDIVKWIGQNLH---------IYNPEDIFDIAF  112 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhc-----chhHHHHHHHHHHH--HccccHHHHHhhccC---------CCCchhhhhhhh
Confidence            67889999999999887664322     12356778888988  789999999954321         123346788899


Q ss_pred             HcCCHHHHHH----HHhcccCCCCccCCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601          207 AFGRTEEISS----LVRMKEYESLDCRDKE--GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR  280 (418)
Q Consensus       207 ~~g~~~~v~~----Ll~~~~~~~~~~~~~~--~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  280 (418)
                      ...++++...    +++.....  ...|..  -..-|..|+..|-+..+.-.+++|-+++.      ++|..|+..++..
T Consensus       113 ~~kDlsLyslGY~l~~~~~~~~--~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRk  184 (192)
T PF03158_consen  113 AKKDLSLYSLGYKLLFNRMMSE--HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRK  184 (192)
T ss_pred             hccchhHHHHHHHHHHhhcccc--cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHH
Confidence            8888876331    22211100  000000  01225677777777777777777765542      6777778777777


Q ss_pred             HHHHHHH
Q 048601          281 MVEMLIE  287 (418)
Q Consensus       281 ~v~~Ll~  287 (418)
                      ++.+++.
T Consensus       185 IL~yfi~  191 (192)
T PF03158_consen  185 ILDYFIR  191 (192)
T ss_pred             HHHHhhc
Confidence            7777653

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.06  E-value=0.00074  Score=62.10  Aligned_cols=63  Identities=30%  Similarity=0.402  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHcCCCCCCC------CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601          245 SIGCAKVLLESGADKEAK------GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR  307 (418)
Q Consensus       245 ~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  307 (418)
                      -...+.+|.+++.+.|..      +.--.|+||+|+.+|..++|.+||+.|+|+..+|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            367788999988776542      333569999999999999999999999999999999999999876

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.88  E-value=0.01  Score=49.20  Aligned_cols=119  Identities=20%  Similarity=0.193  Sum_probs=76.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHH
Q 048601          237 LHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE  316 (418)
Q Consensus       237 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  316 (418)
                      |.-|+...+.+-+.-++...       ..-.++|-+|+.++..+++.+|+.+-   +      .|.-..|.......-++
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f---~------ft~~dv~~~~~~~ydie  220 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKF---N------FTKQDVASMEKELYDIE  220 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhc---c------eecchhhhcCcchhhHH
Confidence            55666666666666555432       12246777777778888888887631   1      12223333333344455


Q ss_pred             HHhcCchHHHHHHcCCHHHHHHHHhCC-CCCCcC---CCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          317 VLQRGEAVLTAARRGELEGLESLLDKG-ASTNYC---DQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       317 ~l~~~~~~~~a~~~g~~~~~~~Ll~~g-~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      |++..       ..-+..++++++++| +++|..   -+.|.|-|.-|+++++.+++.+|+++||-
T Consensus       221 Y~LS~-------h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  221 YLLSE-------HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHhh-------cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            54221       123567888899887 567753   35689999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=96.87  E-value=0.0023  Score=34.41  Aligned_cols=26  Identities=50%  Similarity=0.841  Sum_probs=14.5

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          266 GKTSLHNAAANGDRRMVEMLIEMGAD  291 (418)
Q Consensus       266 g~t~L~~A~~~g~~~~v~~Ll~~g~~  291 (418)
                      |.||+|+|+..++.++++.|++.|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.82  E-value=0.017  Score=46.45  Aligned_cols=139  Identities=15%  Similarity=0.084  Sum_probs=81.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      ..+..|+..+-+.++++.-+....     .-...++.+..||+..+.|+|+|+-++=.     -.+-.+....|....+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~-----~~~~~q~LFElAC~~qkydiV~WI~qnL~-----i~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN-----ERYLNQELFELACEEQKYDIVKWIGQNLH-----IYNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc-----chhHHHHHHHHHHHHccccHHHHHhhccC-----CCCchhhhhhhhhccch
Confidence            356778888888888887543321     12345677788888888888888844311     12334556677777777


Q ss_pred             HHHH----HHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Q 048601          280 RMVE----MLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLT  355 (418)
Q Consensus       280 ~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t  355 (418)
                      ++..    ++.++...-     .+..+             ..|.. .-+..|+..|-+..+.-.+++|.+++.      +
T Consensus       118 sLyslGY~l~~~~~~~~-----~~~d~-------------~~ll~-~hl~~a~~kgll~F~letlkygg~~~~------~  172 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSE-----HNEDP-------------TSLLT-QHLEKAAAKGLLPFVLETLKYGGNVDI------I  172 (192)
T ss_pred             hHHHHHHHHHHhhcccc-----cccCH-------------HHHHH-HHHHHHHHCCCHHHHHHHHHcCCcccH------H
Confidence            6521    222221111     01111             00100 223456667777777777777766652      6


Q ss_pred             HHHHHHHcCCHHHHHHHH
Q 048601          356 PLHIAAIKGHKHVVLLLI  373 (418)
Q Consensus       356 ~L~~A~~~g~~~~v~~Ll  373 (418)
                      +|-.|+.++|..++.+++
T Consensus       173 vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  173 VLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHhhHHHHHHHhh
Confidence            777788888877777765

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.71  E-value=0.032  Score=46.39  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=36.6

Q ss_pred             CHHHHHHHHHcCC-CCCC---CCCCCccHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          245 SIGCAKVLLESGA-DKEA---KGKDGKTSLHNAAANGDRRMVEMLIEMGAD  291 (418)
Q Consensus       245 ~~~~v~~Ll~~~~-~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  291 (418)
                      +..++++++++|. ++|.   +-..|.|-|.-|+..++.+++.+|+++|+-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            3567888888873 4443   245788999999999999999999999873

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=95.38  E-value=0.19  Score=37.13  Aligned_cols=68  Identities=26%  Similarity=0.471  Sum_probs=56.1

Q ss_pred             ccccccceEEEe-ecCCCeeEEEEEEecCCCCCceEEEEeecC--CCceeecCCCccccCCCceeEEEEecC
Q 048601            4 LLAVSEQEVLIN-FTLNSKCRANVRLISLCATSPVAFKVQTSS--PHKFLVNPPSGLVQPLAQTTLQIILKP   72 (418)
Q Consensus         4 l~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~af~~~tt~--~~k~~v~~~~gii~p~~~~~i~~~l~~   72 (418)
                      .|+++|.+|.|. +..++.-...++++|. ...+..|++..-.  ...|.+.+..|.+.|..+..+++.+.+
T Consensus         3 ~l~v~P~~ldFG~v~~g~~~~~~v~l~N~-s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~   73 (102)
T PF14874_consen    3 TLEVSPKELDFGNVFVGQTYSRTVTLTNT-SSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSP   73 (102)
T ss_pred             EEEEeCCEEEeeEEccCCEEEEEEEEEEC-CCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEe
Confidence            467889988885 5678888899999999 6779999987653  356779999999999999999998874

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.14  E-value=0.11  Score=35.98  Aligned_cols=48  Identities=19%  Similarity=0.331  Sum_probs=35.0

Q ss_pred             hHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHc
Q 048601          125 PFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRA  183 (418)
Q Consensus       125 ~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~  183 (418)
                      ...+..|+..|+.|+++.+++.+..         ....+..|+.  ..+.|+++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~---------~~~~l~~AI~--~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP---------DNDCLEYAIK--SHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc---------HHHHHHHHHH--HhhHHHHHHHHHh
Confidence            4568888888888888888865421         1345677777  7788888888876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.22  E-value=0.43  Score=33.05  Aligned_cols=48  Identities=13%  Similarity=0.043  Sum_probs=33.1

Q ss_pred             hhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcc
Q 048601          161 SLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK  221 (418)
Q Consensus       161 ~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~  221 (418)
                      ..+..|..  .|+.||++.+++.+. ++          ...+..|+...+.++++||++..
T Consensus         8 ~tl~~Ai~--GGN~eII~~c~~~~~-~~----------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAII--GGNFEIINICLKKNK-PD----------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHh--CCCHHHHHHHHHHhc-cH----------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            34566666  788888888876542 11          35688888888888888887653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03218 maturation of RBCL 1; Provisional

Probab=85.25  E-value=24  Score=38.11  Aligned_cols=56  Identities=7%  Similarity=0.080  Sum_probs=27.5

Q ss_pred             HHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhc
Q 048601           87 RFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKR  146 (418)
Q Consensus        87 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~  146 (418)
                      .++...+..++.+....++.........    .......+.+...++.|+++.+..+++.
T Consensus       442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~----pD~~tynsLI~~y~k~G~vd~A~~vf~e  497 (1060)
T PLN03218        442 MLMSVCASSQDIDGALRVLRLVQEAGLK----ADCKLYTTLISTCAKSGKVDAMFEVFHE  497 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            3444445556666666665444321000    1112234556666667776666555543

>PLN03218 maturation of RBCL 1; Provisional

Probab=81.96  E-value=32  Score=37.19  Aligned_cols=18  Identities=11%  Similarity=0.001  Sum_probs=10.6

Q ss_pred             hccCCccccccccccCCC
Q 048601           93 TVFGSADSVNSLCVTLPD  110 (418)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~  110 (418)
                      ...|+.+....+|...+.
T Consensus       381 ~r~G~l~eAl~Lfd~M~~  398 (1060)
T PLN03218        381 LRDGRIKDCIDLLEDMEK  398 (1060)
T ss_pred             HHCcCHHHHHHHHHHHHh
Confidence            344666666666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	418
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-18
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-18
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-18
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-18
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-11
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-17
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-17
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-16
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-15
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-16
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-14
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-16
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-15
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-15
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-15
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-15
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-14
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-13
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-14
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-13
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-11
1uoh_A	226	Human Gankyrin Length = 226		2e-11
1uoh_A	226	Human Gankyrin Length = 226		3e-11
1uoh_A	226	Human Gankyrin Length = 226		5e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		8e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		8e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-09
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		7e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-07
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		6e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-06
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		3e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		5e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		6e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		7e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		7e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-05
3deo_A	183	Structural Basis For Specific Substrate Recognition		4e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		6e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		6e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		7e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		7e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		6e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		6e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		7e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/133 (40%), Positives = 70/133 (52%), Gaps = 21/133 (15%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA NG   +V++L+E GAD   KD  GR+   +A   GH+EV+++L         
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL--------- 54
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                        + GA  N  D+ G TPLH+AA  GH  VV LL+E GADV  +D  G 
Sbjct: 55  ------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 388 APLHLAVEGGRVE 400
            PLHLA   G +E
Sbjct: 103 TPLHLAARNGHLE 115

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
           K LLE+            T LH AA NG + +V++L+  GADP  KD  GR+    A + 
Sbjct: 21  KDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
           GH E++++L                       KGA  N  D  G TPLH AA  GHK +V
Sbjct: 81  GHKEIVKLL---------------------LSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
            LL+  GAD    D++G  PL LA E G  E ++ +  KQ G
Sbjct: 120 KLLLSKGADPNTSDSDGRTPLDLAREHGNEE-IVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ ++ AA            + GA  N  D  G TPLH AA  GHK +V LL+  GAD  
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
            +D++G  PLH A E G  E
Sbjct: 65  AKDSDGRTPLHYAAENGHKE 84

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 79/162 (48%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
           K L+E+            T LH+AA NG + +V++LI  GAD   KD  GR+    A + 
Sbjct: 21  KDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
           GH EV+++L                       KGA  N  D  G TPLH AA  GHK VV
Sbjct: 81  GHKEVVKLL---------------------ISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
            LLI  GADV   D++G  PL LA E G  E ++ +  KQ G
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGN-EEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 45/88 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ ++ AA            + GA  N  D  G TPLH AA  GHK VV LLI  GADV 
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 381 CQDNEGHAPLHLAVEGGRVEPLLFIWLK 408
            +D++G  PLH A E G  E +  +  K
Sbjct: 65  AKDSDGRTPLHHAAENGHKEVVKLLISK 92

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
           K LLE+            T LH AA NG + +V++L+  GADP  KD  G++   +A + 
Sbjct: 21  KDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
           GH EV+++L                       +GA  N  D  G TPLH+AA  GHK VV
Sbjct: 81  GHKEVVKLL---------------------LSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
            LL+  GAD    D++G  PL LA E G  E ++ +  KQ G
Sbjct: 120 KLLLSQGADPNTSDSDGRTPLDLAREHGN-EEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ ++ AA            + GA  N  D  G TPLH+AA  GHK VV LL+  GAD  
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
            +D++G  PLHLA E G  E
Sbjct: 65  AKDSDGKTPLHLAAENGHKE 84

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
           K L+E+            T LH AA  G + +V++LI  GAD   KD  GR+    A  +
Sbjct: 21  KDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
           GH E++++L                       KGA  N  D  G TPLH AA +GHK +V
Sbjct: 81  GHKEIVKLL---------------------ISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
            LLI  GADV   D++G  PL LA E G  E ++ +  KQ G
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGN-EEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ ++ AA            + GA  N  D  G TPLH AA +GHK +V LLI  GADV 
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
            +D++G  PLH A + G  E
Sbjct: 65  AKDSDGRTPLHYAAKEGHKE 84

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 18/247 (7%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
           +MV LLL        +  + T  G + LH+AA  G  E + +L+  +  ++  C  K+G 
Sbjct: 94  NMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGF 147
Query: 235 TPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTI 294
           TPLH+A     +  A++LLE             T LH A  + +  +V++L+  G  P  
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Query: 295 KDDRGRSCFDVARDKGHIEVL-EVLQRG-----EAVLT------AARRXXXXXXXXXXDK 342
               G +   +A  +  +EV   +LQ G     E+V        AA+            K
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPL 402
            A+ N  ++ GLTPLH+ A +GH  V  +LI+ G  V+     G+ PLH+A   G ++ +
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 403 LFIWLKQ 409
            F+   Q
Sbjct: 328 KFLLQHQ 334

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH A+  G   +V+ L++ GA P + + +  +   +A   GH EV + L + +A + A
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
             +                   DQ   TPLH AA  GH ++V LL+E  A+       GH
Sbjct: 76  KAKD------------------DQ---TPLHCAARIGHTNMVKLLLENNANPNLATTAGH 114
Query: 388 APLHLAVEGGRVEPLLFIWLKQ 409
            PLH+A   G VE +L +  K+
Sbjct: 115 TPLHIAAREGHVETVLALLEKE 136

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A  +D V +L+  G  +      K KDG++ LH+AA  G  E +  L  +K    ++ +D
Sbjct: 12  AGQDDEVRILMANGADV----NAKDKDGYTPLHLAAREGHLEIVEVL--LKAGADVNAKD 65
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
           K+G TPLHLA  +  +   +VLL++            T LH AA  G   +VE+L++ GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
           D   +D  G++ FD+A D G+ ++ EVLQ+
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 56/193 (29%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
           AA  G+ +E+  L  M     ++ +DK+G TPLHLA                        
Sbjct: 9   AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLA------------------------ 42
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
                    A  G   +VE+L++ GAD   KD  G +   +A  +GH+E++EVL +    
Sbjct: 43  ---------AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA--- 90
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
                             GA  N  D+ G TPLH+AA +GH  +V +L++ GADV  QD 
Sbjct: 91  ------------------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 385 EGHAPLHLAVEGG 397
            G  P  LA++ G
Sbjct: 133 FGKTPFDLAIDNG 145

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD   KD  G +   +A  +GH+E++EVL +            
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----------- 57
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D+ G TPLH+AA +GH  +V +L++ GADV  +D +G+ PLHL
Sbjct: 58  ----------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 393 AVEGGRVE 400
           A   G +E
Sbjct: 108 AAREGHLE 115

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A  +D V +L+  G  +      K KDG++ LH+AA  G  E +  L  +K    ++ +D
Sbjct: 12  AGQDDEVRILMANGADV----NAKDKDGYTPLHLAAREGHLEIVEVL--LKAGADVNAKD 65
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
           K+G TPLHLA  +  +   +VLL++            T LH AA  G   +VE+L++ GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
           D   +D  G++ FD+A  +GH ++ EVLQ+
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 85/193 (44%), Gaps = 56/193 (29%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
           AA  G+ +E+  L  M     ++ +DK+G TPLHLA                        
Sbjct: 9   AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLA------------------------ 42
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
                    A  G   +VE+L++ GAD   KD  G +   +A  +GH+E++EVL +    
Sbjct: 43  ---------AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA--- 90
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
                             GA  N  D+ G TPLH+AA +GH  +V +L++ GADV  QD 
Sbjct: 91  ------------------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 385 EGHAPLHLAVEGG 397
            G  P  LA+  G
Sbjct: 133 FGKTPFDLAIREG 145

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD   KD  G +   +A  +GH+E++EVL +            
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----------- 57
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D+ G TPLH+AA +GH  +V +L++ GADV  +D +G+ PLHL
Sbjct: 58  ----------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 393 AVEGGRVE 400
           A   G +E
Sbjct: 108 AAREGHLE 115

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A  +D V +L+  G  +      K KDG++ LH+AA  G  E +  L  +K    ++ +D
Sbjct: 24  AGQDDEVRILMANGADV----NAKDKDGYTPLHLAAREGHLEIVEVL--LKAGADVNAKD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
           K+G TPLHLA  +  +   +VLL++            T LH AA  G   +VE+L++ GA
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
           D   +D  G++ FD++ D G+ ++ E+LQ
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD   KD  G +   +A  +GH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----------- 69
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D+ G TPLH+AA +GH  +V +L++ GADV  +D +G+ PLHL
Sbjct: 70  ----------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 119
Query: 393 AVEGGRVE 400
           A   G +E
Sbjct: 120 AAREGHLE 127

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A  +D V +L+  G  +   + V    GW+ LH+AA FG  E +  L  +K    ++  D
Sbjct: 24  AGQDDEVRILMANGADVNASDHV----GWTPLHLAAYFGHLEIVEVL--LKNGADVNADD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
             G TPLHLA ++  +   +VLL++            T LH AA  G   +VE+L++ GA
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
           D   +D  G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA  G   +VE+L++ GAD    D  G +   +A D+GH+EV+EVL +       
Sbjct: 49  TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                          GA  N  D  G TPLH+AA  GH  +V +L++ GADV  QD  G 
Sbjct: 102 --------------NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
               ++++ G 
Sbjct: 148 TAFDISIDNGN 158

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 22/137 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD    D+ G +   +A   GH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D  G+TPLH+AA  GH  +V +L++ GADV   DN+GH PLHL
Sbjct: 69  ---------NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQ 409
           A + G +E ++ + LK 
Sbjct: 120 AAKYGHLE-IVEVLLKH 135

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A  +D V +L+  G     D   +   GW+ LH+AA FG  E +  L  +K    ++ +D
Sbjct: 24  AGQDDEVRILMANG----ADVNARDFTGWTPLHLAAHFGHLEIVEVL--LKNGADVNAKD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
             G TPLHLA  +  +   +VLL++            T LH AA  G   +VE+L++ GA
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
           D   +D  G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD   +D  G +   +A   GH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D  G+TPLH+AA +GH  +V +L++ GADV   D+ G  PLHL
Sbjct: 69  ---------NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHL 119
Query: 393 AVEGGRVE 400
           A + G +E
Sbjct: 120 AAKRGHLE 127

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 23/143 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD   +DD G++   +A  KGH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D+ G TPLH+AA+ GH  +V +L++ GADV   D  G  PLHL
Sbjct: 69  ---------HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQWGTMVS 415
           A + G +E ++ + LK +G  V+
Sbjct: 120 AADAGHLE-IVEVLLK-YGADVN 140

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA  G   +VE+L++ GAD   +D  G +   +A D GH+E++EVL +       
Sbjct: 49  TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                          GA  N  D YGLTPLH+AA +GH  +V +L++ GADV  QD  G 
Sbjct: 102 --------------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
               ++++ G 
Sbjct: 148 TAFDISIDNGN 158

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA  G   +VE+L++ GAD    D+ G +   +A D GH+E++EVL +       
Sbjct: 49  TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                          GA  N  D  G TPLH+AA  GH  +V +L+++GADV  QD  G 
Sbjct: 102 --------------HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
               ++++ G 
Sbjct: 148 TAFDISIDNGN 158

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A  +D V +L+  G  +   + V    GW+ LH+AA +G  E +  L  +K    ++  D
Sbjct: 24  AGRDDEVRILMANGADVNAADVV----GWTPLHLAAYWGHLEIVEVL--LKNGADVNAYD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
             G TPLHLA +   +   +VLL++            T LH AA  G   +VE+L++ GA
Sbjct: 78  TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
           D   +D  G++ FD++ + G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA  G   +VE+L++ GAD    D  G +   +A   GH+E++EVL +       
Sbjct: 49  TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                          GA  N  D  G+TPLH+AA +GH  +V +L+++GADV  QD  G 
Sbjct: 102 --------------NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
               +++  G 
Sbjct: 148 TAFDISINNGN 158

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 23/143 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +LI  GAD    D+ G +   +A   GH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  +  D YG TPLH+AA+ GH  +V +L+++GADV   D  G  PLHL
Sbjct: 69  ---------HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQWGTMVS 415
           A + G +E ++ + LK +G  V+
Sbjct: 120 AADEGHLE-IVEVLLK-YGADVN 140

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD    D  G +   +  + GH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                      A  N  D+ G TPLH+AA +GH  +V +L+++GADV   D +G+ PLHL
Sbjct: 69  ---------YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHL 119
Query: 393 AVEGGRVE 400
           A E G +E
Sbjct: 120 AAEDGHLE 127

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AAA G    V +L+  GAD    DD G +   +A   G +E++EVL +            
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK------------ 60
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D  G+TPLH+AA  GH  +V +L++ GADV   D  G  PLHL
Sbjct: 61  ---------NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL 111
Query: 393 AVEGGRVE 400
           A   G++E
Sbjct: 112 AALSGQLE 119

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD   +D  G +   +A   GH+E++EVL +            
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D  G+TPL +AA+ GH  +V +L++ GADV   D EGH PLHL
Sbjct: 69  ---------NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119
Query: 393 AVEGGRVE 400
           A   G +E
Sbjct: 120 AAMFGHLE 127

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD    D  GR+   +A   GH+E++EVL R            
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR------------ 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D  G TPLH+AA  GH  +V +L+++GADV  +D  G  PL+L
Sbjct: 57  ---------NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYL 107
Query: 393 AVEGGRVE 400
           A   G +E
Sbjct: 108 AAYWGHLE 115

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD    D+ G +   +A   GH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  +  D +G TPLH+AA  GH  +V +L++ GADV   D++G  PLHL
Sbjct: 69  ---------HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHL 119
Query: 393 AVEGGRVE 400
           A + G +E
Sbjct: 120 AAKWGYLE 127

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA  G   +VE+L++ GAD    D  G +   +A   GH+E++EVL +       
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                          GA  N  D +G TPLH+AAI GH  +V +L++ GADV  QD  G 
Sbjct: 102 --------------HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
               ++++ G 
Sbjct: 148 TAFDISIDNGN 158

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
           AA  G    V +L+  GAD   +D  G +   +A   GH+E++EVL +            
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                     GA  N  D  G TPLH+AA +GH  +V +L+++GADV   D  G  PLHL
Sbjct: 69  ---------NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQWGTMVS 415
           A + G +E ++ + LK +G  V+
Sbjct: 120 AADTGHLE-IVEVLLK-YGADVN 140

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA  G   +VE+L++ GAD    D  G +   +A   GH+E++EVL +       
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                          GA  N  D +G TPLH+AAI GH  +V +L++ GADV  QD  G 
Sbjct: 102 --------------HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
               ++++ G 
Sbjct: 148 TAFDISIDNGN 158

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 21/117 (17%)
Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXD 341
           V +L+  GAD    DD G +   +A  +GH+E++EVL +                     
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--------------------- 68
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
            GA  N  D +G TPLH+AA  GH  +V +L+E+GADV  QD  G     ++++ G 
Sbjct: 69  HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           L  A   G    V +L+  GAD    DD G +   +A  +GH+E++EVL +         
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                        GA  N  D +G TPLH+AA  GH  +V +L+E+GADV  QD  G   
Sbjct: 69  ------------HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
             ++++ G
Sbjct: 117 FDISIDNG 124

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           L  AA  G    V +L+  GAD    D+ G +   +A   GH+E++EVL +         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                        GA  N  D +G+TPLH+AAI+GH  +V +L++ GADV  QD  G   
Sbjct: 69  ------------YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
             ++++ G
Sbjct: 117 FDISIDNG 124

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           L  A   G    V +L+  GAD    DD G +   +A  +GH+E++EVL +         
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                        GA  N  D +G TPLH+AA  GH  +V +L+E+GADV  QD  G   
Sbjct: 69  ------------HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
             ++++ G
Sbjct: 117 FDISIDNG 124

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
           T+LH A + G   +VE L+++G     KDD G S   +A   G  E+++ L         
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
             Q G   L  AA +          + GA+ +  D Y  T +H AA KG+  +V +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 376 GADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
            A    QD EG+ PLHLA +  RVE   F+
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           DQ   T LH A   GH  +V  L++ G  V  +D+ G +PLH+A   GR E
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 87

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
           T+LH A + G   +VE L+++G     KDD G S   +A   G  E+++ L         
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
             Q G   L  AA +          + GA+ +  D Y  T +H AA KG+  +V +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 376 GADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
            A    QD EG+ PLHLA +  RVE   F+
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 21/110 (19%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH AA NG   +V++L+E GAD   KD  GR+   +A   GH+EV+++L         
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL--------- 54
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
                        + GA  N  D+ G TPLH+AA  GH  VV LL+E GA
Sbjct: 55  ------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
           +A   ++V  LL+ G+ +      K   GWS LH+AA+ GR E + +L  + +   ++  
Sbjct: 49  SAGHTEIVEFLLQLGVPV----NDKDDAGWSPLHIAASAGRDEIVKAL--LGKGAQVNAV 102
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
           ++ G TPLH A +K     A +LLE             T++H AAA G+ +M+ +L+   
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 162
Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           A   I+D  G +   +A D+  +E  ++L
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKLL 191

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
           T+LH A + G   +VE L+++G     KDD G S   +A   G  E+++ L         
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
             Q G   L  AA +          + GA+ +  D Y  T +H AA KG+  ++ +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
            A    QD EG+ PLHLA +  RVE
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVE 186

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           DQ   T LH A   GH  +V  L++ G  V  +D+ G +PLH+A   GR E
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 87

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
           +A   ++V  LL+ G+ +      K   GWS LH+AA+ GR E + +L  + +   ++  
Sbjct: 50  SAGHTEIVEFLLQLGVPV----NDKDDAGWSPLHIAASAGRDEIVKAL--LGKGAQVNAV 103
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
           ++ G TPLH A +K     A +LLE             T++H AAA G+ +M+ +L+   
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 163
Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           A   I+D  G +   +A D+  +E  ++L
Sbjct: 164 ASTNIQDTEGNTPLHLACDEERVEEAKLL 192

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
           T+LH A + G   +VE L+++G     KDD G S   +A   G  E+++ L         
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
             Q G   L  AA +          + GA+ +  D Y  T +H AA KG+  ++ +L+ +
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
            A    QD EG+ PLHLA +  RVE
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVE 187

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           DQ   T LH A   GH  +V  L++ G  V  +D+ G +PLH+A   GR E
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 88

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A  +D V +L+  G     D       G S LH+AA +G       L+R     S D R 
Sbjct: 12  AGQDDEVRILMANGAPFTTDWL-----GTSPLHLAAQYGHFSTTEVLLRAGV--SRDART 64
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
           K  RTPLH+A ++      +VLL+             T+LH A  +  + +VE+LI+ GA
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
           D   +    ++ FD++ D G+ ++ E+LQ
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           LH AA  G     E+L+  G     +    R+   +A  +GH  ++EVL +         
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK--------- 88
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                        GA  N  D   +T LH A    H+ VV LLI++GADV  Q       
Sbjct: 89  ------------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136
Query: 390 LHLAVEGG 397
             ++++ G
Sbjct: 137 FDISIDNG 144

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           L  AA  G    V +L+  GAD    D +G +   +A D  H+E++EVL +         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                        GA  N  D  G TPLH+AA+ GH  +V +L++ GADV  QD  G   
Sbjct: 69  ------------HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
             ++++ G
Sbjct: 117 FDISIDNG 124

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 42/267 (15%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
           + N E +++LL    ++    +  K+    + LH+AA + R   +  L  ++    +  +
Sbjct: 34  SGNEEKLMALLTPLNVNCHASDGRKS----TPLHLAAGYNRVRIVQLL--LQHGADVHAK 87
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
           DK G  PLH A +       ++LL+             T LH AA+     +  +L+  G
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXX---------- 339
           ADPT+ +  G+S  D+A      E L    +G ++L AAR                    
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207
Query: 340 --------------------------XDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI 373
                                       KGA+ N  ++  +TPLH+AA + H  V+ +L 
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 374 EFGADVECQDNEGHAPLHLAVEGGRVE 400
           + GA +   D+ G   LH A   G ++
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQ 294

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 24/114 (21%)
Query: 268 TSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
           T+LH A A+     +++ E+L+  GA+   K+    +   VA ++ H +V+EVL +    
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK---- 268
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
                             GA  N  D  G T LH AA+ GH     LL+ +G+D
Sbjct: 269 -----------------HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           L  AA  G    V +L+  GAD   KD+ G +   +A   GH+E++EVL +         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                        GA  N  D  G TPLH+AA  GH  +  +L++ GADV  QD  G   
Sbjct: 69  ------------NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
             +++  G
Sbjct: 117 FDISIGNG 124

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
           D+V  LL  G ++   E    + GW+ LH A    R + +  L+R      L  R K G 
Sbjct: 19  DLVQQLLEGGANVNFQEE---EGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGA 73
Query: 235 TPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTI 294
           TP  LA    S+   K+ L              T+   AA  G  + ++ L + GA+  +
Sbjct: 74  TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Query: 295 ----KDDR------GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
               K+D+      G +    A +KGH+EVL++L                      + GA
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL--------------------LDEMGA 173
Query: 345 STNYCDQYGLTPLHIAAIKGH----KHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
             N CD  G   L  A +       + +  LL++ GADV  +   G  PL LAVE
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LHNA       +VE+L+  GADP ++   G + F +A   G +++L++          
Sbjct: 41  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF--------- 91
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC-----Q 382
                         KGA  N CD YG T    AA+ G    +  L + GA+V       +
Sbjct: 92  ------------LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 383 DNE-----GHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
           D E     G   L  A E G VE +L I L + G  V+
Sbjct: 140 DQERLRKGGATALMDAAEKGHVE-VLKILLDEMGADVN 176

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
           D+V  LL  G ++   E    + GW+ LH A    R + +  L+R      L  R K G 
Sbjct: 39  DLVQQLLEGGANVNFQEE---EGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGA 93
Query: 235 TPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTI 294
           TP  LA    S+   K+ L              T+   AA  G  + ++ L + GA+  +
Sbjct: 94  TPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 153
Query: 295 ----KDDR------GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
               K+D+      G +    A +KGH+EVL++L                      + GA
Sbjct: 154 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL--------------------LDEMGA 193
Query: 345 STNYCDQYGLTPLHIAAIKGH----KHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
             N CD  G   L  A +       + +  LL++ GADV  +   G  PL LAVE
Sbjct: 194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 248

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LHNA       +VE+L+  GADP ++   G + F +A   G +++L++          
Sbjct: 61  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF--------- 111
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC-----Q 382
                         KGA  N CD YG T    AA+ G    +  L + GA+V       +
Sbjct: 112 ------------LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159
Query: 383 DNE-----GHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
           D E     G   L  A E G VE +L I L + G  V+
Sbjct: 160 DQERLRKGGATALMDAAEKGHVE-VLKILLDEMGADVN 196

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
           AA  G+ +E+  L  M     ++  DK G TPLHLA     +   +VLL++         
Sbjct: 21  AARAGQDDEVRIL--MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
              T LH  A  G   +VE+L++ GAD   +D  G++ FD++ D G+ ++ E+LQ+
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           L  AA  G    V +L+  GAD   +D  G +   +A    H+E++EVL +         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                        GA  N  D  G TPLH+ A+ GH  +V +L++ GADV  QD  G   
Sbjct: 69  ------------NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
             ++++ G
Sbjct: 117 FDISIDNG 124

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 83/206 (40%), Gaps = 21/206 (10%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCR--DKEGRTPLHLAVNKTSIGCAKVLL-ESXXXXXX 261
           A  +G  E    LV        D R  DKE  T LH A     I   K  + +       
Sbjct: 16  ATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL-QR 320
                 T LH A   G   MV  L++ GADP++ D  G SC  +A   GH  ++  L  +
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 321 GEAV------------LTAARRXXXXXXXXXXDKGASTNYCDQYGL-TPLHIAAIKGHKH 367
           G+ V              A R               S N  D+Y   T LH A + G+  
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 368 VVLLLIEFGADVECQDNEGHAPLHLA 393
           V+ LL+E GA+V+ Q+ +G + L LA
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLA 217

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 59/194 (30%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGR--TPLHLAVNKTSIGCAKVLLESXXXXXXX 262
           AA  G  E +  L  +   +S++CRD EGR  TPLH A     +                
Sbjct: 19  AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRV---------------- 59
Query: 263 XXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
                             +VE L++ GAD   KD  G      A   GH EV E+L +  
Sbjct: 60  -----------------SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-- 100
Query: 323 AVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
                               GA  N  D +  TPLH AA KG   +  LL++ GAD   +
Sbjct: 101 -------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 141
Query: 383 DNEGHAPLHLAVEG 396
           + +G+ PL L  +G
Sbjct: 142 NRDGNTPLDLVKDG 155

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 59/194 (30%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGR--TPLHLAVNKTSIGCAKVLLESXXXXXXX 262
           AA  G  E +  L  +   +S++CRD EGR  TPLH A     +                
Sbjct: 15  AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRV---------------- 55
Query: 263 XXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
                             +VE L++ GAD   KD  G      A   GH EV E+L +  
Sbjct: 56  -----------------SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-- 96
Query: 323 AVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
                               GA  N  D +  TPLH AA KG   +  LL++ GAD   +
Sbjct: 97  -------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 383 DNEGHAPLHLAVEG 396
           + +G+ PL L  +G
Sbjct: 138 NRDGNTPLDLVKDG 151

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 59/194 (30%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGR--TPLHLAVNKTSIGCAKVLLESXXXXXXX 262
           AA  G  E +  L  +   +S++CRD EGR  TPLH A     +                
Sbjct: 17  AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRV---------------- 57
Query: 263 XXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
                             +VE L++ GAD   KD  G      A   GH EV E+L +  
Sbjct: 58  -----------------SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-- 98
Query: 323 AVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
                               GA  N  D +  TPLH AA KG   +  LL++ GAD   +
Sbjct: 99  -------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 139
Query: 383 DNEGHAPLHLAVEG 396
           + +G+ PL L  +G
Sbjct: 140 NRDGNTPLDLVKDG 153

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 42/80 (52%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ +L AAR             GA  N  D +G TPLH+AA+ GH  +V +L++ GADV 
Sbjct: 15  GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
              N G  PLHLA     +E
Sbjct: 75  ATGNTGRTPLHLAAWADHLE 94

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 16/206 (7%)
Query: 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXX 258
           WS +H AA  G    + +L+      ++   D    +PLH A     + C K+LL+    
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 259 XXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
                    T L NA  +G    V +L++ GA    + D      + AR +GH+E +  L
Sbjct: 62  VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 120
Query: 319 ------------QRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
                         G  +  A             + GA  N       +PLH  A    +
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASE 179
Query: 367 HVVLLLIEFGADVECQDNEGHAPLHL 392
            +  LL++FGAD + ++ EG  P+ L
Sbjct: 180 ELACLLMDFGADTQAKNAEGKRPVEL 205

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 22/168 (13%)
Query: 234 RTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPT 293
           R+PLH A     +    +L+++            T L  AA N     V+ LI+ GA   
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 294 IKDDRGRSCFDVARDKGHIEVLE-VLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
            KD  G +C  +A  KGH EV++ +L  G+                        N  D  
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ---------------------MDVNCQDDG 110
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           G TP+  A    H  +V LL+  G+D+  +DNE +  LH A   G V+
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 16/206 (7%)
Query: 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXX 258
           WS +H AA  G    + +L+      ++   D    +PLH A     + C K+LL+    
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 259 XXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
                    T L NA  +G    V +L++ GA    + D      + AR +GH+E +  L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 176
Query: 319 ------------QRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
                         G  +  A             + GA  N       +PLH       +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASE 235
Query: 367 HVVLLLIEFGADVECQDNEGHAPLHL 392
            +  LL++FGAD + ++ EG  P+ L
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVEL 261

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 127 LLRHAVSNGDFNAVKSILKRQKMILAG----LSSAEAESLYRVA-TELAANSEDMVSLLL 181
           LLR AV++GD   V+ +L+  +  L      +S+A+ E  + +      A ++  ++ + 
Sbjct: 15  LLR-AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP 73
Query: 182 RAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV 241
            +GL +     V ++DG S LHVAA  GR + I  L  +K   +   R+ +   PLHLA 
Sbjct: 74  ASGLGV----NVTSQDGSSPLHVAALHGRADLIPLL--LKHGANAGARNADQAVPLHLAC 127
Query: 242 NKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS 301
            +      K LL+S            T L  A + G   +V +L++ GA     +++G +
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 302 CFDVARDKGHIEVLEVL 318
               A  + H+ V+E+L
Sbjct: 188 ALHEAVIEKHVFVVELL 204

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 25/138 (18%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           + LH AA +G   ++ +L++ GA+   ++        +A  +GH +V++ L         
Sbjct: 88  SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL--------- 138
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                        D  A  N  D  G TPL  A   GH  +V LL++ GA +   +N+G+
Sbjct: 139 ------------LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN 186
Query: 388 APLHLAVEGGRVEPLLFI 405
             LH AV    +E  +F+
Sbjct: 187 TALHEAV----IEKHVFV 200

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           G   N   Q G +PLH+AA+ G   ++ LL++ GA+   ++ +   PLHLA + G  +
Sbjct: 76  GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 173 SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE 232
           + ++ S LL    ++ +D+      GW+  H+A + G  E + SL        L+    +
Sbjct: 48  AHEITSFLLSKMENVNLDD-YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
           G T LHLAV K     ++ L+E+              LH AA+ G  +++E+L  +G   
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
                                                              ++ N+ D+ 
Sbjct: 165 ---------------------------------------------------SAVNWQDKQ 173
Query: 353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEG 386
           G TPL  A  +GH    +LL+E +GA+ +  DN+G
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 173 SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE 232
           + ++ S LL    ++ +D+      GW+  H+A + G  E + SL        L+    +
Sbjct: 48  AHEITSFLLSKMENVNLDD-YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
           G T LHLAV K     ++ L+E+              LH AA+ G  +++E+L  +G   
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
                                                              ++ N+ D+ 
Sbjct: 165 ---------------------------------------------------SAVNWQDKQ 173
Query: 353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEG 386
           G TPL  A  +GH    +LL+E +GA+ +  DN+G
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 173 SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE 232
           + ++ S LL    ++ +D+      GW+  H+A + G  E + SL        L+    +
Sbjct: 48  AHEITSFLLSKMENVNLDD-YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
           G T LHLAV K     ++ L+E+              LH AA+ G  +++E+L  +G   
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
                                                              ++ N+ D+ 
Sbjct: 165 ---------------------------------------------------SAVNWQDKQ 173
Query: 353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEG 386
           G TPL  A  +GH    +LL+E +GA+ +  DN+G
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 21/110 (19%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T LH A+  GD   VE L++ G+DP +KD  G +    A + GH++V+E+L + +A++  
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN- 70
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
                            +T Y +    +PLH AA  GH  +V LL+ +GA
Sbjct: 71  -----------------TTGYQND---SPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 8/202 (3%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
           A + G TEE+  L  ++    ++  + +G T LH A    ++   K L+E+         
Sbjct: 47  ACSSGDTEEVLRL--LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE-VLQRGEA 323
                LH AA+ G   + E LI  GA     +  G +  D+A ++   E+L+  + R   
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164
Query: 324 VLTAARRXXXXXXXXXXDKGASTNYCD-----QYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
            + AAR+           +  ++ + +     + G T LH+AA KG+  V+ LLI+   D
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 379 VECQDNEGHAPLHLAVEGGRVE 400
           V  +D +G  PLH A   G+ E
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEE 246

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           KGA  N   + G TPLH+AA  GH  +V LL+  GADV  +  +G+ P HLA + G  E
Sbjct: 31  KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHE 89

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ +L AAR             GA  N  D+ G TPLH+AA +GH  +V +L++ GADV 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 381 CQDNEGHAPLHLAVEGG 397
            QD  G     ++++ G
Sbjct: 63  AQDKFGKTAFDISIDNG 79

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ +L AAR             GA     D+ G TPLH+AA  GH  VV LL+E GADV 
Sbjct: 7   GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 381 CQDNEGHAPLHLAVEGGR 398
            QD  G     ++++ G 
Sbjct: 67  AQDKFGKTAFDISIDNGN 84

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 47/248 (18%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
           D V  L+  G+S  I  R     G + LH+A  FG  +    L  + E  SL      G+
Sbjct: 34  DEVRRLIETGVSPTIQNRF----GCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQ 85
Query: 235 TPLHLAV--NKTSIGCAKV------------LLE-------SXXXXXXXXXXXXTSLHNA 273
            P+HLAV  NKT +  A V            LL        +            T+LH  
Sbjct: 86  KPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWC 145
Query: 274 AANGDRRM--VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRX 331
              G   +  +++L+++GA PT KD    +    A +  + E L++        ++ R  
Sbjct: 146 VGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLR-- 203
Query: 332 XXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH 391
                          +Y ++ G + LH A +   + V    +E G DV  +DNE   PL+
Sbjct: 204 --------------LDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLY 249
Query: 392 LAVEGGRV 399
           L+V    V
Sbjct: 250 LSVRAAXV 257

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           G+ +L AAR             GA     D+ G TPLH+AA  GH  VV LL+E GADV 
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 381 CQDNEGHAPLHLAVEGG 397
            QD  G     ++++ G
Sbjct: 85  AQDKFGKTAFDISIDNG 101

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 9/183 (4%)
Query: 149 MILAGLSSAEAESLYRVATELAANSEDMVSL--LLRAGLSIEIDERVKTKDGWSELHVAA 206
           ++ AG S    +   + A  LA        L  LL +     +D   +  DG + LHVA 
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 207 AFGRTEEISSLV-RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXX 265
                E +  L+ R  + +++D   K GR+PL  AV   S+   ++LL+           
Sbjct: 125 NTECQETVQLLLERGADIDAVDI--KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Query: 266 XXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL 325
             ++LH+A+  G   +V  L+  GAD ++K+    +   VAR +  I++L    RG+A  
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL----RGKATR 238
Query: 326 TAA 328
            A+
Sbjct: 239 PAS 241

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GA+ +  D+ G   +H AA  G    +  L+EF ADV  +DNEG+ PLHLA + G +  
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
           + F+ +K   + V H
Sbjct: 119 VEFL-VKHTASNVGH 132

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------ 321
           T LH A       + E L+  G DP ++D RG +   +A ++G +  + VL +       
Sbjct: 44  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 322 EAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
            ++L A                  TNY    G T LH+A+I G+  +V LL+  GADV  
Sbjct: 104 HSILKA------------------TNY---NGHTCLHLASIHGYLGIVELLVSLGADVNA 142
Query: 382 QDN-EGHAPLHLAVE 395
           Q+   G   LHLAV+
Sbjct: 143 QEPCNGRTALHLAVD 157

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------ 321
           T LH A       + E L+  G DP ++D RG +   +A ++G +  + VL +       
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 322 EAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
            ++L A                  TNY    G T LH+A+I G+  +V LL+  GADV  
Sbjct: 107 HSILKA------------------TNY---NGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Query: 382 QDN-EGHAPLHLAVE 395
           Q+   G   LHLAV+
Sbjct: 146 QEPCNGRTALHLAVD 160

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GA+ +  D+ G   +H AA  G    +  L+EF ADV  +DNEG+ PLHLA + G +  
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
           + F+ +K   + V H
Sbjct: 119 VEFL-VKHTASNVGH 132

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GA+ +  D+ G   +H AA  G    +  L+EF ADV  +DNEG+ PLHLA + G +  
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
           + F+ +K   + V H
Sbjct: 119 VEFL-VKHTASNVGH 132

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GAS N  D  G +P+H AA  G    + +L+E GADV   D  G  P+HLAV+ G    
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116
Query: 402 LLFI 405
           + F+
Sbjct: 117 VSFL 120

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 279 RRMVEMLIEMGADPTIKDDRGRSCFDVA---RD-------------KGHIEVLEVLQRGE 322
           RR+V  L + GADPTI +   RS    A   RD             KG IE L+  + G 
Sbjct: 179 RRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELD--RNGX 236
Query: 323 AVLTAAR----RXXXXXXXXXXDKGASTNY-------CDQY-GLTPLHIAAIKGHKHVVL 370
             L        R          +KGA  +Y        ++Y G T LH AA   +  +V 
Sbjct: 237 TALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVK 296
Query: 371 LLI-EFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV 414
            L+ E G++ + QD +G  P+ LA + GR+E  +  +L Q G  V
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIE--VVXYLIQQGASV 339

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GAS N  D  G +P+H AA  G    + +L+E GADV   D  G  P+HLAV+ G    
Sbjct: 63  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 122
Query: 402 LLFI 405
           + F+
Sbjct: 123 VSFL 126

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GA+ +  D+ G   +H AA  G    +  L+EF ADV  +DNEG+ PLHLA + G +  
Sbjct: 59  RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
           + F+ +K   + V H
Sbjct: 119 VEFL-VKHTASNVGH 132

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T L  AAA+G   +VE L++ GADP +      S   +A  KG+ +++++L         
Sbjct: 54  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--------- 104
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                        D G   N  D  G TPL  A    H   V +L+E GAD   + + G+
Sbjct: 105 ------------LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 152
Query: 388 APLHLAVEGG 397
             + LAV  G
Sbjct: 153 NSMDLAVALG 162

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T L  AAA+G   +VE L++ GADP +      S   +A  KG+ +++++L         
Sbjct: 36  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--------- 86
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                        D G   N  D  G TPL  A    H   V +L+E GAD   + + G+
Sbjct: 87  ------------LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 134
Query: 388 APLHLAVEGG 397
             + LAV  G
Sbjct: 135 NSMDLAVALG 144

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T L  AAA+G   +VE L++ GADP +      S   +A  KG+ +++++L         
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--------- 88
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                        D G   N  D  G TPL  A    H   V +L+E GAD   + + G+
Sbjct: 89  ------------LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136
Query: 388 APLHLAV 394
             + LAV
Sbjct: 137 NSMDLAV 143

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GAS N  D  G +P+H AA  G    + +L+E GADV   D+ G  P+HLA+  G    
Sbjct: 65  QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 124
Query: 402 LLFI 405
           + F+
Sbjct: 125 VSFL 128

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GAS N  D  G +P+H AA  G    + +L+E GADV   D+ G  P+HLA+  G    
Sbjct: 63  QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 122
Query: 402 LLFI 405
           + F+
Sbjct: 123 VSFL 126

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
            GA+ N  D  G  PLH A I GH  +  L ++ GAD+  +D+EG  PL +A+E
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
            GA+ N  D  G  PLH A I GH  +  L ++ GAD+  +D+EG  PL +A+E
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
            GA+ N  D  G  PLH A I GH  +  L ++ GAD+  +D+EG  PL +A+E
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           +GA+ +  D+ G   +H AA  G    +  L+E  ADV  +DNEG+ PLHLA + G +  
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
           + F+ +K   + V H
Sbjct: 119 VEFL-VKHTASNVGH 132

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
           +GA  N  ++   TPLH+AA  GH+ +V  L+++ AD+   +  G+ PLH A   G+
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXX-XXXXXXXT 268
           R  +  +L ++ E   +D  D+ GRT L       S  C ++L E+             T
Sbjct: 53  RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARD 308
           +LH AA      +VE L+E+GAD  ++D+RG +  ++AR+
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
           +GA  N  ++   TPLH+AA  GH+ +V  L+++ AD+   +  G+ PLH A   G+
Sbjct: 56  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 211 TEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSL 270
           T+++  +++   Y+ +D  D EG TPL++AV+   I  AK L++             +  
Sbjct: 18  TKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 271 HNAAANGDRRMVEMLIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
             A A G   ++  +++       K +R G +    A +KGHI+ +++L           
Sbjct: 77  LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL----------- 125
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAI------KGHKHVVLLLIEFGADVECQD 383
                      D     ++ + +G T L I A+      + ++ +V LL+E GAD   +D
Sbjct: 126 ---------LEDGREDIDFQNDFGYTAL-IEAVGLREGNQLYQDIVKLLMENGADQSIKD 175
Query: 384 NEGHAPLHLAVEGGRVE 400
           N G   +  A + G  E
Sbjct: 176 NSGRTAMDYANQKGYTE 192

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
           G+T LH A   GH  +V  L++FG +V   D++G  PLH A     V+   F+
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXX-XXXXXXXT 268
           R  +  +L ++ E   +D  D+ GRT L       S  C ++L E+             T
Sbjct: 54  RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARD 308
           +LH AA      +VE L+E+GAD  ++D+RG +  ++AR+
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
           G+T LH A   GH  +V  L++FG +V   D++G  PLH A     V+   F+
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T L  A+A G+   V  L+E GADP I      S   +A   G+ +++ +L         
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL--------- 88
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                        ++    N  D  G TPL  A    H   V  L+  GAD+  + + G+
Sbjct: 89  ------------LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY 136
Query: 388 APLHLAVEGG 397
            P+ LAV  G
Sbjct: 137 TPMDLAVALG 146

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           KG++ N  D  G TPL  + I G+  +   L+E GA+V  ++ EG  PL +A + GR E
Sbjct: 90  KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T L  A+A G+   V  L+E GADP I      S   +A   G+ +++ +L         
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL--------- 88
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
                        ++    N  D  G TPL  A    H   V  L+  GAD+  + + G+
Sbjct: 89  ------------LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGY 136
Query: 388 APLHLAVEGG 397
            P+ LAV  G
Sbjct: 137 TPMDLAVALG 146

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
           TSLH AA        + L++ GAD   +D+ GR+    A     + V ++L R  A    
Sbjct: 53  TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 112
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
                    ++ AAR              A  N  D  G T LH AA   +   V +L+ 
Sbjct: 113 ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM 172
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
             A+ + QD++   PL LA   G  E
Sbjct: 173 HHANRDAQDDKDETPLFLAAREGSYE 198

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
           T+LH AAA       + L+E  AD  I+D+ GR+    A       V ++L R  A    
Sbjct: 59  TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
                    ++ AAR           +  A  N  D  G + LH AA   +    ++L++
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
            GA+ + Q+N    PL LA   G  E
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYE 204

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 342 KGAST-NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
           +GAS  N  D+ G T LH+AA          L+E  AD   QDN G  PLH AV
Sbjct: 45  QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	418
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-62
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-45
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-58
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-57
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-55
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-50
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-58
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-44
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-42
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-57
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-53
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-56
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-51
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-55
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-52
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-50
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-49
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-54
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-47
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-54
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-52
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-48
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-46
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-53
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-51
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-51
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-43
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-52
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-50
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-49
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-47
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-25
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-52
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-46
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-50
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-41
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-49
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-47
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-39
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-49
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-49
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-49
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-46
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-49
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-46
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-49
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-43
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-48
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-48
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-46
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-47
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-44
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-43
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-40
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-47
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-47
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-47
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-38
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-46
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-41
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-45
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-40
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-40
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-19
2rfa_A	232	Transient receptor potential cation channel subfa	2e-44
2rfa_A	232	Transient receptor potential cation channel subfa	9e-44
2rfa_A	232	Transient receptor potential cation channel subfa	1e-38
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-44
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-36
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-44
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-43
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-43
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-40
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-43
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-35
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-38
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-42
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-42
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-41
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-41
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-40
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-37
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-40
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-36
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-39
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-37
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-37
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-35
2etb_A	256	Transient receptor potential cation channel subfam	3e-37
2etb_A	256	Transient receptor potential cation channel subfam	8e-37
2etb_A	256	Transient receptor potential cation channel subfam	6e-20
2etb_A	256	Transient receptor potential cation channel subfam	9e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-37
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-17
2pnn_A	273	Transient receptor potential cation channel subfa	1e-36
2pnn_A	273	Transient receptor potential cation channel subfa	1e-34
2pnn_A	273	Transient receptor potential cation channel subfa	5e-29
2pnn_A	273	Transient receptor potential cation channel subfa	2e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-35
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-31
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-34
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-34
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-33
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-33
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-28
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-07
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	2e-13
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	2e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-08
2cri_A	147	Vesicle-associated membrane protein-associated pro	2e-11
1z9l_A	128	Vesicle-associated membrane protein-associated pro	2e-11
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1row_A	109	SSP-19, MSP-domain protein like family member; bet	1e-06

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  205 bits (523), Expect = 1e-62
 Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 17/236 (7%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
           N E +++LL    ++             + LH+AA + R   +  L+           + 
Sbjct: 36  NEEKLMALLTPLNVNCHA----SDGRKSTPLHLAAGYNRVRIVQLLL------QHGADVH 85

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
            +DK G  PLH A +       ++LL+ GA   A      T LH AA+     +  +L+ 
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347
            GADPT+ +  G+S  D+A      E L    +G ++L AAR  +L  ++  L       
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205

Query: 348 YCDQYGLTPLHIAAIKGH---KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
              Q   T LH A    H   K V  LL+  GA+V  ++ +   PLH+A E    +
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  164 bits (419), Expect = 2e-47
 Identities = 54/240 (22%), Positives = 88/240 (36%), Gaps = 46/240 (19%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA  N  ++ SLLL  G    +        G S + +A      E ++           
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTL----VNCHGKSAVDMAPTPELRERLTYEF-------- 177

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR---MVE 283
                +G + L  A     +   K  L        + +  +T+LH A A+   +   + E
Sbjct: 178 -----KGHSLLQAAREA-DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

Query: 284 MLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           +L+  GA+   K+    +   VA ++ H +V+EVL                        G
Sbjct: 232 LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL---------------------HKHG 270

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLL 403
           A  N  D  G T LH AA+ GH     LL+ +G+D      +G     +  E   V+ +L
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE--AVQQIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  159 bits (404), Expect = 2e-45
 Identities = 50/247 (20%), Positives = 75/247 (30%), Gaps = 61/247 (24%)

Query: 179 LLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL-------DCRDK 231
            L        +      +    EL  AA  G  E++ +L        L          D 
Sbjct: 9   DLADPSAKAVL----TGEYKKDELLEAARSGNEEKLMAL--------LTPLNVNCHASDG 56

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
              TPLHLA     +   ++LL+ GAD  AK K G   LHNA + G   + E+L++ GA 
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
               D    +    A  K  +EV  +                     LL  GA     + 
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSL---------------------LLSHGADPTLVNC 155

Query: 352 YGLTPLHIAAIKGHKHVVLLLIE---------------------FGADVECQDNEGHAPL 390
           +G + + +A     +  +    +                            Q       L
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215

Query: 391 HLAVEGG 397
           H AV   
Sbjct: 216 HCAVASL 222

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  153 bits (390), Expect = 3e-43
 Identities = 46/175 (26%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 227 DCRDKEGRTPLH-LAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
               +  +  L   A +        +L     +  A      T LH AA     R+V++L
Sbjct: 18  VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
           ++ GAD   KD  G      A   GH EV E+                     LL  GA 
Sbjct: 78  LQHGADVHAKDKGGLVPLHNACSYGHYEVTEL---------------------LLKHGAC 116

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            N  D +  TPLH AA K    V  LL+  GAD    +  G + + +A      E
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  138 bits (349), Expect = 3e-37
 Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 35/171 (20%)

Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR-RMVEMLIEMG 289
           + G++ L L              +  A     G+  K  L  AA +G+  +++ +L  + 
Sbjct: 2   EFGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC 349
            +    D R  +   +A     + ++++                     LL  GA  +  
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRIVQL---------------------LLQHGADVHAK 87

Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           D+ GL PLH A   GH  V  LL++ GA V   D     PLH A    RVE
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE 138

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (274), Expect = 8e-27
 Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 75/246 (30%)

Query: 159 AESLYRVATELAA----NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFG---RT 211
               ++  + L A    +   +   L             + +   + LH A A     R 
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALEI-----INFKQPQSHETALHCAVASLHPKRK 227

Query: 212 EEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLH 271
           +    L+R     +++ ++K+  TPLH+A  +      +VL + GA   A    G+T+LH
Sbjct: 228 QVAELLLRKGA--NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285

Query: 272 NAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRG 331
            AA  G  +   +L+  G+DP+I   +G                          TA    
Sbjct: 286 RAALAGHLQTCRLLLSYGSDPSIISLQGF-------------------------TA---- 316

Query: 332 ELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH 391
                                      +     ++ V  +L E    +   D +    L 
Sbjct: 317 -------------------------AQMG----NEAVQQILSE-STPMRTSDVDY--RLL 344

Query: 392 LAVEGG 397
            A + G
Sbjct: 345 EASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.6 bits (187), Expect = 3e-15
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 17/113 (15%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
           +AA     D++ +L + G   +++       G + LH AA  G  +    L+    Y S 
Sbjct: 253 VAAERAHNDVMEVLHKHG--AKMNA--LDSLGQTALHRAALAGHLQTCRLLL---SYGSD 305

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD 278
                 +G T   +          + +L           D +  L  A+  GD
Sbjct: 306 PSIISLQGFTAAQMGNE-----AVQQILSESTPMRTSDVDYR--LLEASKAGD 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  196 bits (501), Expect = 2e-58
 Identities = 66/234 (28%), Positives = 104/234 (44%), Gaps = 29/234 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           +AA     + V  LL    S        TK G++ LHVAA +G+      L+        
Sbjct: 119 IAAREGHVETVLALLEKEASQAC----MTKKGFTPLHVAAKYGKVRVAELLLERDA--HP 172

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           +   K G TPLH+AV+  ++   K+LL  G    +   +G T LH AA      +   L+
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           + G     +  +G +   +A  +GH E++ +                     LL K A+ 
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVAL---------------------LLSKQANG 271

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           N  ++ GLTPLH+ A +GH  V  +LI+ G  V+     G+ PLH+A   G ++
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 325

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  193 bits (493), Expect = 2e-57
 Identities = 65/234 (27%), Positives = 98/234 (41%), Gaps = 29/234 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           +A+      +V  LL+ G S  +          + LH+AA  G TE    L++ K    +
Sbjct: 20  VASFMGHLPIVKNLLQRGASPNV----SNVKVETPLHMAARAGHTEVAKYLLQNK--AKV 73

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           + + K+ +TPLH A         K+LLE+ A+       G T LH AA  G    V  L+
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           E  A       +G +   VA   G + V E+                     LL++ A  
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAEL---------------------LLERDAHP 172

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           N   + GLTPLH+A    +  +V LL+  G         G+ PLH+A +  +VE
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  190 bits (484), Expect = 4e-56
 Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 31/235 (13%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE-S 225
           +A   N+ D+V LLL  G S          +G++ LH+AA   + E   SL+   +Y  S
Sbjct: 185 VAVHHNNLDIVKLLLPRGGSPHS----PAWNGYTPLHIAAKQNQVEVARSLL---QYGGS 237

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
            +    +G TPLHLA  +       +LL   A+     K G T LH  A  G   + ++L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
           I+ G         G +   VA   G+I++++                      LL   A 
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKF---------------------LLQHQAD 336

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            N   + G +PLH AA +GH  +V LL++ GA      ++G  PL +A   G + 
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  189 bits (483), Expect = 6e-56
 Identities = 64/234 (27%), Positives = 98/234 (41%), Gaps = 29/234 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           +AA     ++   LL+    +      K KD  + LH AA  G T  +  L+      + 
Sbjct: 53  MAARAGHTEVAKYLLQNKAKVNA----KAKDDQTPLHCAARIGHTNMVKLLLENNA--NP 106

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           +     G TPLH+A  +  +     LLE  A +    K G T LH AA  G  R+ E+L+
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           E  A P      G +   VA    +++++++                     LL +G S 
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL---------------------LLPRGGSP 205

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           +     G TPLHIAA +    V   L+++G     +  +G  PLHLA + G  E
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  188 bits (481), Expect = 1e-55
 Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 23/207 (11%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
             + G + LHVA+  G    + +L++     S +  + +  TPLH+A        AK LL
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 254 ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE 313
           ++ A   AK KD +T LH AA  G   MV++L+E  A+P +    G +   +A  +GH+E
Sbjct: 68  QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127

Query: 314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI 373
            +                       LL+K AS     + G TPLH+AA  G   V  LL+
Sbjct: 128 TVLA---------------------LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 374 EFGADVECQDNEGHAPLHLAVEGGRVE 400
           E  A        G  PLH+AV    ++
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLD 193

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  173 bits (442), Expect = 5e-50
 Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 32/230 (13%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           +AA  N  ++   LL+ G S       ++  G + LH+AA  G  E ++ L+   +  + 
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANA----ESVQGVTPLHLAAQEGHAEMVALLL--SKQANG 271

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           +  +K G TPLHL   +  +  A VL++ G   +A  + G T LH A+  G+ ++V+ L+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           +  AD   K   G S    A  +GH +++ +L                     L  GAS 
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL---------------------LKNGASP 370

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEF---GADVECQDNEGHAPLHLA 393
           N     G TPL IA   G+  V  +L       + V   D    +     
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (422), Expect = 4e-47
 Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 21/174 (12%)

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
               + G TPLH+A     +   K LL+ GA         +T LH AA  G   + + L+
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           +  A    K    ++    A   GH  ++++                     LL+  A+ 
Sbjct: 68  QNKAKVNAKAKDDQTPLHCAARIGHTNMVKL---------------------LLENNANP 106

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           N     G TPLHIAA +GH   VL L+E  A   C   +G  PLH+A + G+V 
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  151 bits (384), Expect = 1e-41
 Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 41/226 (18%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           LAA     +MV+LLL    +  +      K G + LH+ A  G       L++      +
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNL----GNKSGLTPLHLVAQEGHVPVADVLIKHGV--MV 304

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           D   + G TPLH+A +  +I   K LL+  AD  AK K G + LH AA  G   +V +L+
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           + GA P      G +   +A+  G+I V +V                  L+ + D+ +  
Sbjct: 365 KNGASPNEVSSDGTTPLAIAKRLGYISVTDV------------------LKVVTDETSFV 406

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
              D++ ++                +++   D      EG   +  
Sbjct: 407 LVSDKHRMSFPETVD---------EILDVSED------EGEELISF 437

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (359), Expect = 5e-38
 Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 21/145 (14%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
           G      G+ G T LH A+  G   +V+ L++ GA P + + +  +   +A   GH EV 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
           +                      LL   A  N   +   TPLH AA  GH ++V LL+E 
Sbjct: 64  KY---------------------LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
            A+       GH PLH+A   G VE
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVE 127

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            G S     + GLTPLH+A+  GH  +V  L++ GA     + +   PLH+A   G  E
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  192 bits (490), Expect = 2e-58
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 13/235 (5%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
            SE  +   +      +    VK  DG      A + G TEE+  L+  +    ++  + 
Sbjct: 19  GSETDLEPPVVKRKKTK----VKFDDGAV-FLAACSSGDTEEVLRLL--ERGADINYANV 71

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           +G T LH A    ++   K L+E+GA+      +G   LH AA+ G   + E LI  GA 
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVL-----QRGEAVL-TAARRGELEGLESLLDKGAS 345
               +  G +  D+A ++   E+L+          EA      R    +  + L     +
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
                + G T LH+AA KG+  V+ LLI+   DV  +D +G  PLH A   G+ E
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  154 bits (393), Expect = 3e-44
 Identities = 51/231 (22%), Positives = 80/231 (34%), Gaps = 41/231 (17%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
           ++ DMV  L+  G +I         +GW  LH AA+ G  +    L+      S    + 
Sbjct: 84  DNVDMVKFLVENGANINQ----PDNEGWIPLHAAASCGYLDIAEYLI------SQGAHVG 133

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
             + EG TPL +A  +      +  +         G D + +         R   + L  
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKEEERIMLRDARQWLNS 187

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347
              +       G +   VA  KG+ EVL++L                     +      N
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLL---------------------IQARYDVN 226

Query: 348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
             D  G TPLH AA  G +    +L+E   D+E  +  G     +A E   
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  148 bits (376), Expect = 8e-42
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 22/175 (12%)

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           +   D + +    L     S    +  +      + K  DG      A ++GD   V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSSGDTEEVLRL 59

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
           +E GAD    +  G +    A    ++++++                      L++ GA+
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKF---------------------LVENGAN 98

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            N  D  G  PLH AA  G+  +   LI  GA V   ++EG  PL +A E    E
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  140 bits (356), Expect = 6e-39
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 25/204 (12%)

Query: 192 RVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKV 251
           ++          +    G   ++   V  +  +    +  +G      A +         
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKR--KKTKVKFDDG-AVFLAACSSGDTEEVLR 58

Query: 252 LLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311
           LLE GAD      DG T+LH A  + +  MV+ L+E GA+    D+ G      A   G+
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118

Query: 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLL 371
           +++ E                      L+ +GA     +  G TPL IA  +  + ++  
Sbjct: 119 LDIAEY---------------------LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 372 LIEF-GADVECQDNEGHAPLHLAV 394
            +   G D+E    E    +    
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDA 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  138 bits (350), Expect = 5e-38
 Identities = 37/218 (16%), Positives = 70/218 (32%), Gaps = 35/218 (16%)

Query: 170 AA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLD 227
           AA     D+   L+  G  +         +G + L +A      E + + V  +  + ++
Sbjct: 113 AASCGYLDIAEYLISQGAHVGA----VNSEGDTPLDIAEEEAMEELLQNEVNRQGVD-IE 167

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
              KE    +            + L     +     K G T+LH AAA G   ++++LI+
Sbjct: 168 AARKEEERIMLRDA-------RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347
              D  IKD  G +    A   G  E   +L                     ++      
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRIL---------------------VENLCDME 259

Query: 348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNE 385
             ++ G T   +A      ++  L  +       +  +
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  187 bits (478), Expect = 1e-57
 Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 30/235 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA     D+  +L++AG    ID    ++D  + L  AA     E +  L++      +
Sbjct: 17  AAAEAGHVDICHMLVQAG--ANIDT--CSEDQRTPLMEAAENNHLEAVKYLIKAGA--LV 70

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEML 285
           D +D EG T LHLA  K      + LL +G  D   +   G T +  A       +V++L
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
           +  G+D  I+D+    C   A   G +++ E+L                     L     
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEIL---------------------LAAKCD 169

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            +  + +G +PLHIAA +     V+L +   +DV  ++ EG  PL  A    +V 
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  175 bits (447), Expect = 6e-53
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 32/217 (14%)

Query: 189 IDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LDCRDKEGRTPLHLAVNKT 244
           ++ +++ ++  S LH AA  G  +    LV           +D   ++ RTPL  A    
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLV------QAGANIDTCSEDQRTPLMEAAENN 55

Query: 245 SIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGA-DPTIKDDRGRSCF 303
            +   K L+++GA  + K  +G T LH AA  G   +V+ L+  G  D   +DD G +  
Sbjct: 56  HLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

Query: 304 DVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIK 363
             A +  H++++++                     LL KG+  N  D      LH AA  
Sbjct: 116 IWATEYKHVDLVKL---------------------LLSKGSDINIRDNEENICLHWAAFS 154

Query: 364 GHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           G   +  +L+    D+   +  G +PLH+A    R +
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  166 bits (422), Expect = 4e-49
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 28/212 (13%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA  N  + V  L++AG  ++     K  +G + LH+AA  G  E +  L+   + + +
Sbjct: 50  EAAENNHLEAVKYLIKAGALVDP----KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-V 104

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           +C+D  G TP+  A     +   K+LL  G+D   +  +    LH AA +G   + E+L+
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
               D    +  G S   +A  +   + + +                      L + +  
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLF---------------------LSRDSDV 203

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
              ++ G TPL  A++       L + +   D
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  184 bits (469), Expect = 1e-55
 Identities = 53/239 (22%), Positives = 88/239 (36%), Gaps = 31/239 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA    +  +  L+  G ++ I     T D  S LH A   G    +  L++      +
Sbjct: 65  EAAIHGHQLSLRNLISQGWAVNI----ITADHVSPLHEACLGGHLSCVKILLKHGA--QV 118

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           +    +  TPL  A    S  C  +LL+ GA  + +  D  + +H AA  G    V  LI
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLI 177

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
             G +   K     +   +A +      ++ L                     L+ GA  
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKL---------------------LESGADV 216

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
           N   +   +PLH       + +  LL++FGAD + ++ EG  P+ L      +  L   
Sbjct: 217 N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLE 274

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  176 bits (450), Expect = 1e-52
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 34/235 (14%)

Query: 169 LAA--NSEDMVSLLLRAGLSI-EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES 225
           + +  +     S L+  G  +  +D +    DG          G    +S          
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-RLLS--------NP 51

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           L        +P+H A         + L+  G        D  + LH A   G    V++L
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
           ++ GA          +    A   G  + + +                     LL  GAS
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNL---------------------LLQHGAS 150

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
               +    +P+H AA +GH   V  LI +G +++ + +    PL+LA E  +  
Sbjct: 151 VQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  146 bits (372), Expect = 2e-41
 Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 30/209 (14%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
                V +LL+ G  +       T D  + L  A   G  + ++ L++     S+   + 
Sbjct: 103 GHLSCVKILLKHGAQVNG----VTADWHTPLFNACVSGSWDCVNLLLQHGA--SVQ-PES 155

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           +  +P+H A  +  + C   L+  G + + K     T L+ A  N  R  V+ L+E GAD
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
              +     S           E+  +                     L+D GA T   + 
Sbjct: 216 VN-QGKGQDSPLHAVVRTASEELACL---------------------LMDFGADTQAKNA 253

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
            G  P+ +   +      L L   GA + 
Sbjct: 254 EGKRPVELVPPESPL-AQLFLEREGASLP 281

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  180 bits (459), Expect = 2e-54
 Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 35/234 (14%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
           ++  ++S  +  G S+        + G + LH+AA + R++    L+            +
Sbjct: 34  DAPAVISDFIYQGASLHN---QTDRTGETALHLAARYSRSDAAKRLL------EASADAN 84

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
            +D  GRTPLH AV+  + G  ++L+ + A D +A+  DG T L  AA      M+E LI
Sbjct: 85  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
              AD    DD G+S    A    +++   VL                     L  GA+ 
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVL---------------------LKNGANK 183

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           +  +    TPL +AA +G      +L++  A+ +  D+    P  +A E    +
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  169 bits (431), Expect = 2e-50
 Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 36/227 (15%)

Query: 187 IEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL------------DCRDKEGR 234
           ++++   +  DG++ L +A+  G   E  +    ++  ++            +  D+ G 
Sbjct: 1   MDVNV--RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE 58

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGA-DPT 293
           T LHLA   +    AK LLE+ AD   +   G+T LH A +   + + ++LI   A D  
Sbjct: 59  TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118

Query: 294 IKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353
            +   G +                      ++ AAR      LE L++  A  N  D  G
Sbjct: 119 ARMHDGTT---------------------PLILAARLAVEGMLEDLINSHADVNAVDDLG 157

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            + LH AA   +    ++L++ GA+ + Q+N    PL LA   G  E
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 204

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  165 bits (420), Expect = 9e-49
 Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 28/212 (13%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           LAA  +  D    LL A     I    +   G + LH A +         L+R +  + L
Sbjct: 63  LAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNRATD-L 117

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           D R  +G TPL LA      G  + L+ S AD  A    GK++LH AAA  +     +L+
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           + GA+  ++++R  +   +A  +G  E  +VL                     LD  A+ 
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVL---------------------LDHFANR 216

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
           +  D     P  IA  + H  +V LL      
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  106 bits (266), Expect = 2e-26
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
           LAA    E M+  L+ +   +          G S LH AAA    +    L+        
Sbjct: 130 LAARLAVEGMLEDLINSHADVNA----VDDLGKSALHWAAAVNNVDAAVVLL------KN 179

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
               D ++    TPL LA  + S   AKVLL+  A+++      +     A       +V
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239

Query: 283 EMLIEMGADP 292
            +L       
Sbjct: 240 RLLDLEHHHH 249

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  179 bits (456), Expect = 2e-54
 Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 35/235 (14%)

Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----L 226
            ++  ++S  +  G S+        + G + LH+AA + R++    L+            
Sbjct: 1   GDAPAVISDFIYQGASLHN---QTDRTGETALHLAARYSRSDAAKRLL------EASADA 51

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEML 285
           + +D  GRTPLH AV+  + G  ++L+ + A D +A+  DG T L  AA      M+E L
Sbjct: 52  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
           I   AD    DD G+S    A    +++   VL                     L  GA+
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVL---------------------LKNGAN 150

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            +  +    TPL +AA +G      +L++  A+ +  D+    P  +A E    +
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 205

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  161 bits (409), Expect = 2e-47
 Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 28/214 (13%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           LAA  +  D    LL A    + +   +   G + LH A +         L+R +  + L
Sbjct: 31  LAARYSRSDAAKRLLEAS--ADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATD-L 85

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           D R  +G TPL LA      G  + L+ S AD  A    GK++LH AAA  +     +L+
Sbjct: 86  DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
           + GA+  ++++R  +   +A  +G  E  +VL                     LD  A+ 
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVL---------------------LDHFANR 184

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
           +  D     P  IA  + H  +V LL E+     
Sbjct: 185 DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  178 bits (454), Expect = 8e-54
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 28/214 (13%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYE--SLDCRDKEGRTPLHLAVNKTSIGCAKV 251
             +DG + LH+A   G    +  LV + +     LD  +   +TPLHLAV  T     ++
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 252 LLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGA----DPTIKDDRGRSCFDVAR 307
           L+ +GA   A  + G+T+ H A  +     +  L++  A    D   ++  G +   VA 
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124

Query: 308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCD-QYGLTPLHIAAIKGHK 366
           +    E +++                     LL++GA  +  D + G +PL  A      
Sbjct: 125 NTECQETVQL---------------------LLERGADIDAVDIKSGRSPLIHAVENNSL 163

Query: 367 HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            +V LL++ GA+V  Q   G + LH A   G + 
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  175 bits (446), Expect = 1e-52
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 42/245 (17%)

Query: 169 LAA--NSEDMVSLLLRAGLS--IEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE 224
           +A    +   V  L+        E+D         + LH+A        +  LV      
Sbjct: 15  IAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRLLV------ 66

Query: 225 S----LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGA----DKEAKGKDGKTSLHNAAAN 276
           +        D+ G+T  HLA    S  C + LL+S A    D EA+  DG T+LH A   
Sbjct: 67  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126

Query: 277 GDRRMVEMLIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG 335
             +  V++L+E GAD    D + GRS    A +   + ++++L                 
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL----------------- 169

Query: 336 LESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
               L  GA+ N     G + LH A+ +G   +V  L+  GAD   ++     PL +A  
Sbjct: 170 ----LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225

Query: 396 GGRVE 400
              ++
Sbjct: 226 RRVID 230

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  163 bits (415), Expect = 4e-48
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 30/214 (14%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRM--KEYE 224
           LA       +V LL+ AG S         + G +  H+A        + +L+        
Sbjct: 52  LAVITTLPSVVRLLVTAGASPMA----LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107

Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK-GKDGKTSLHNAAANGDRRMVE 283
            L+ R+ +G T LH+AVN       ++LLE GAD +A   K G++ L +A  N    MV+
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167

Query: 284 MLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           +L++ GA+   +   G S    A  +G + ++  L                     +  G
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL---------------------VRSG 206

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
           A ++  + +  TPL +A  +    ++       A
Sbjct: 207 ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  157 bits (399), Expect = 9e-46
 Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 30/184 (16%)

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLE----SGADKEAKGKDGKTSLHNAAANGDRRM 281
               D++G TPLH+AV + ++     L+      G + +      +T LH A       +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD 341
           V +L+  GA P   D  G++   +A +      L                       LLD
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA---------------------LLD 100

Query: 342 KGAST----NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD-NEGHAPLHLAVEG 396
             A         +  GLT LH+A     +  V LL+E GAD++  D   G +PL  AVE 
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160

Query: 397 GRVE 400
             + 
Sbjct: 161 NSLS 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  178 bits (454), Expect = 2e-53
 Identities = 50/209 (23%), Positives = 75/209 (35%), Gaps = 9/209 (4%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMK-EYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
            T+DG + LH+A        +  L+     +E LD ++  G+T LHLA         + L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
             +GA      + G T+LH A          +L++                         
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL-------TQSQ 117

Query: 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
           +         A + +    E E      D        +  G TPLH+A I     +V LL
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 373 IEFGADVECQD-NEGHAPLHLAVEGGRVE 400
            + GAD+   +   G  PLHLAVE     
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAAS 206

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  171 bits (437), Expect = 6e-51
 Identities = 51/247 (20%), Positives = 79/247 (31%), Gaps = 40/247 (16%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVR------- 219
           LAA       V  L  AG  + +      + G + LH+A           L++       
Sbjct: 51  LAAILGEASTVEKLYAAGAGVLV----AERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

Query: 220 ----MKEYESLDCRDKEGRTPLHL-AVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAA 274
                   +S DC       P  + +             +     EA+  DG T LH A 
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

Query: 275 ANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGEL 333
            + D  MV +L + GAD    +   GR+   +A +     VLE+L               
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL--------------- 211

Query: 334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
                 L  GA        G TPL  A ++ +  +  LL   GA       +  +P   +
Sbjct: 212 ------LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS 265

Query: 394 VEGGRVE 400
                 +
Sbjct: 266 GSDSDSD 272

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  143 bits (362), Expect = 6e-40
 Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 34/220 (15%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDER---------VKTKDGWSELHVAAAFGRTEEISSL 217
           LA    +     +LL+   S   D                  +   V +      E    
Sbjct: 84  LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 218 VRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKD-GKTSLHNAAAN 276
                   L+  + +G TPLH+AV        ++L ++GAD        G+T LH A   
Sbjct: 144 DEDWR-LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGL 336
               ++E+L++ GADPT +   GR+    A  + +  +  +L                  
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL------------------ 244

Query: 337 ESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
                 GA         L+P   +             E+ 
Sbjct: 245 ---RAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  120 bits (304), Expect = 1e-31
 Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 19/201 (9%)

Query: 128 LRHAVSNGDFNAVK-------SILKRQKMILAGLSSAEAESLYRVATELAA---NSEDMV 177
           L  A                 S  +         S             + +      +  
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 178 SLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE-SLDCRDKE-GRT 235
                  L +E     +  DG + LHVA      E +  L    +    L+  +   GRT
Sbjct: 142 PRDEDWRLQLEA----ENYDGHTPLHVAVIHKDAEMVRLLR---DAGADLNKPEPTCGRT 194

Query: 236 PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIK 295
           PLHLAV   +    ++LL++GAD  A+   G+T L +A    +  +  +L   GA     
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254

Query: 296 DDRGRSCFDVARDKGHIEVLE 316
                S    +      +  +
Sbjct: 255 GGDKLSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  106 bits (267), Expect = 2e-26
 Identities = 28/179 (15%), Positives = 44/179 (24%), Gaps = 57/179 (31%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKE---AKGKDGKTSLHNAAANGDRRMVEMLI 286
            ++G T LHLAV          LL   A  E    +   G+T+LH AA  G         
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG--------- 56

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
                                       +E L                        GA  
Sbjct: 57  ------------------------EASTVEKL---------------------YAAGAGV 71

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
              ++ G T LH+A          +L++         ++ +                 +
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  176 bits (448), Expect = 4e-53
 Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 38/236 (16%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
              +    L+ AG  +        K+  + LH AA   R + +   +      S    +D
Sbjct: 20  GIYERCRELVEAGYDVRQ----PDKENVTLLHWAAINNRIDLVKYYI------SKGAIVD 69

Query: 228 CRDKE-GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
               +   TPLH A  +  +     L++ GAD      +G + +H AA  G   +V  LI
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 287 EMGADPTIKDDRGRSCFDVARDKGH-IEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
             G D  + D  G +    A  + H ++   +                     LL    S
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL---------------------LLTFNVS 168

Query: 346 TNYCDQY-GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            N  D+Y   T LH A + G+  V+ LL+E GA+V+ Q+ +G + L LA +   V 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  172 bits (439), Expect = 1e-51
 Identities = 60/210 (28%), Positives = 80/210 (38%), Gaps = 26/210 (12%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
                  ++  A  +G  E    LV    Y+ +   DKE  T LH A     I   K  +
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVE-AGYD-VRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 254 ESGADKEAKGKD-GKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
             GA  +  G D   T LH A   G   MV  L++ GADP++ D  G SC  +A   GH 
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122

Query: 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGH-KHVVLL 371
            ++                       L+ KG   +  DQ G+TPL  AA + H      L
Sbjct: 123 SIVAY---------------------LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 372 LIEFGADVECQDN-EGHAPLHLAVEGGRVE 400
           L+ F   V   D    +  LH AV  G   
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  159 bits (404), Expect = 1e-46
 Identities = 42/173 (24%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           +   D      +  A         + L+E+G D     K+  T LH AA N    +V+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 286 IEMGADPTIKD-DRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGA 344
           I  GA       D   +    A  +GH+ ++  L                     +  GA
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL---------------------MKYGA 100

Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
             +  D  G + +H+AA  GH  +V  LI  G DV+  D  G  PL  A    
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT 153

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  150 bits (381), Expect = 4e-43
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 33/221 (14%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKD-GWSELHVAAAFGRTEEISSLVRMKEYES 225
            AA  N  D+V   +  G    +D+     D   + LH A   G    +  L++      
Sbjct: 48  WAAINNRIDLVKYYISKG--AIVDQ--LGGDLNSTPLHWATRQGHLSMVVQLMKYGA--D 101

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR-MVEM 284
               D EG + +HLA           L+  G D +   ++G T L  AA          +
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 285 LIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           L+       + D     +    A   G+  V+ +L                     L+ G
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL---------------------LEAG 200

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
           A+ +  +  G + L +A  + +  ++  L E        DN
Sbjct: 201 ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG-YDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 77.1 bits (191), Expect = 2e-16
 Identities = 15/54 (27%), Positives = 20/54 (37%)

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            + D Y    +  A   G       L+E G DV   D E    LH A    R++
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID 56

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  178 bits (455), Expect = 1e-52
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 17/233 (7%)

Query: 165 VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE 224
               L     +M+ +L++ G S       K K   + L  A  F   E +  ++     +
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTA----KDKADETPLMRAMEFRNREALDLMMDTVPSK 199

Query: 225 S---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM 281
           S   LD  +K+G + LH A+       A   +E G D   +  +    L+ +       +
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLL 259

Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL-TAARRGELEGLESLL 340
            + L++      I+     +            VL         +  AA   + E L+ L 
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTT---------VLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 341 DKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
           +K          G         K    V  + +   A V  +         ++
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  171 bits (437), Expect = 5e-50
 Identities = 51/259 (19%), Positives = 85/259 (32%), Gaps = 38/259 (14%)

Query: 169 LAA--NSEDMVSLLLRAG-------LSI----------EIDERVKTKDGWSELHVAAAFG 209
           LA   N  D+V  L+           S+          EI   VK   G + LH     G
Sbjct: 90  LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLG 149

Query: 210 --RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES-----GADKEAK 262
               E I  LV++    S   +DK   TPL  A+   +     +++++         +  
Sbjct: 150 PEYLEMIKILVQLGA--SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA 207

Query: 263 GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL-QRG 321
            K G + LH A       +    +EMG D  ++D+       ++     + + + L Q+ 
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

Query: 322 EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
           +  L  A              G +        L  +  AA    + V+ LL E   +V  
Sbjct: 268 DVFLIQACP---------YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR 318

Query: 382 QDNEGHAPLHLAVEGGRVE 400
             N G        +     
Sbjct: 319 SLNTGAGGAVKRKKKAAPA 337

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  170 bits (433), Expect = 2e-49
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 23/226 (10%)

Query: 188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG 247
           +++      +   ++HVAA  G+T+E+  L+      S   +++ G T LHLA     + 
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVD 67

Query: 248 CAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
            AK L   G         G+  +H A       +V  L+E         +RG+    +  
Sbjct: 68  TAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLLN 119

Query: 308 DKGHIEVLEVL-----QRGEAVL-TAARRGE--LEGLESLLDKGASTNYCDQYGLTPLHI 359
           +    EV E+       +G+  L      G   LE ++ L+  GAS    D+   TPL  
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179

Query: 360 AAIKGHKHVVLLLIEF-----GADVECQDNEGHAPLHLAVEGGRVE 400
           A    ++  + L+++         ++  + +G++ LH A+     +
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  165 bits (420), Expect = 2e-47
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 40/236 (16%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           LA      D    L   G             G   +H+A    +T+ + +L        +
Sbjct: 59  LACKFGCVDTAKYLASVG----EV--HSLWHGQKPIHLAVMANKTDLVVAL--------V 104

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR--MVEM 284
           +   + G+ P  L          +           K   G+T+LH     G     M+++
Sbjct: 105 EGAKERGQMPESLLNECDEREVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158

Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGA 344
           L+++GA PT KD    +    A +  + E L+++              ++ + S      
Sbjct: 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLM--------------MDTVPSK--SSL 202

Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
             +Y ++ G + LH A +   + V +  +E G DV  +DNE   PL+L+V    V 
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL 258

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  118 bits (297), Expect = 5e-30
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 29/154 (18%)

Query: 247 GCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA 306
           G   +      ++     +    +H AA  G    V  LIE G  PTI++  G +   +A
Sbjct: 1   GPGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

Query: 307 RDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHK 366
              G ++  +                      L   G   +    +G  P+H+A +    
Sbjct: 61  CKFGCVDTAKY---------------------LASVGEVHS--LWHGQKPIHLAVMANKT 97

Query: 367 HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            +V+ L+E   +       G  P  L  E    E
Sbjct: 98  DLVVALVEGAKER------GQMPESLLNECDERE 125

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  105 bits (265), Expect = 1e-25
 Identities = 14/152 (9%), Positives = 38/152 (25%), Gaps = 17/152 (11%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLV-------- 218
            A   N ED+    +  G+ + +    +  +    L+++           L+        
Sbjct: 217 WAILINWEDVAMRFVEMGIDVNM----EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 219 ---RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA 275
                    ++          +  A + +     ++L E   +       G         
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKK 332

Query: 276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
                +  M +   A    +         V++
Sbjct: 333 KAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  172 bits (439), Expect = 8e-52
 Identities = 60/237 (25%), Positives = 92/237 (38%), Gaps = 30/237 (12%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLV-RMKEYESLDCRD 230
               +  LL      +      K +DG   LH + +F   E  S L+ +M+     D  D
Sbjct: 14  EFFKVQELLHSKPSLLLQ----KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 69

Query: 231 KEGRTPLHLAVNKTSIGCAKVLLE--SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM 288
             G TP H+A +  ++   K L +     D       G T LH A       + + LIE 
Sbjct: 70  DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129

Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST-N 347
           GA   IKD   +     A   G ++++E+L                        G S  N
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELL---------------------CGLGKSAVN 168

Query: 348 YCDQYGLTPLHIAAIKGHKHVVLLLIEF-GADVECQDNEGHAPLHLAVEGGRVEPLL 403
           + D+ G TPL  A  +GH    +LL+E  GA+ +  DN+G     +A+     +  L
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  158 bits (403), Expect = 2e-46
 Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 28/205 (13%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGAD--- 258
           LH A       ++  L+  K    L  +D++GR PLH +V+  +      LL    +   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 259 KEAKGKDGKTSLHNAAANGDRRMVEMLIE--MGADPTIKDDRGRSCFDVARDKGHIEVLE 316
            +     G T  H A + G+  +V+ L +  +  D     ++G +C  +A  K   EV +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 317 VLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
            L                     ++ GAS    D++   PLH AA  G   ++ LL   G
Sbjct: 125 FL---------------------IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 377 -ADVECQDNEGHAPLHLAVEGGRVE 400
            + V  QD +G  PL  A+  G  +
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGD 188

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  142 bits (362), Expect = 2e-40
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 31/176 (17%)

Query: 233 GRTPLHLAV---NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
              PLH A        +   ++L    +    K +DG+  LH + +     +   L+   
Sbjct: 2   SNYPLHQACMENEFFKV--QELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 290 ADPTI---KDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDK--GA 344
            +  +    DD G + F +A   G++EV++ L                      D+    
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL---------------------YDRPLKP 98

Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
             N     G+T LH+A  K    V   LIE GA V  +D     PLH A   G ++
Sbjct: 99  DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  168 bits (428), Expect = 1e-50
 Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 29/205 (14%)

Query: 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES 255
           K+G     +       + +  L         + RD   RTPL +A           L+E+
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLR--------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
               E K  +G T+L  A  N    + E L+  G++   KD  G++    +   G+ E+ 
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
                                  LL+ GA+ N  +  G TPL +A+  G   +V  L+E 
Sbjct: 118 YF---------------------LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156

Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
           GAD+  +D  G      A   GR E
Sbjct: 157 GADISARDLTGLTAEASARIFGRQE 181

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  143 bits (363), Expect = 4e-41
 Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 31/192 (16%)

Query: 187 IEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LDCRDKEGRTPLHLAVN 242
           ++     +     + L VA   G    I  LV           L+ +D EG T L  AV 
Sbjct: 24  LDFLRNYRDSYNRTPLMVACMLGMENAIDKLV------ENFDKLEDKDIEGSTALIWAVK 77

Query: 243 KTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSC 302
              +G A+ LL  G++   K   GKT L  +   G   M   L+E GA+   ++  G + 
Sbjct: 78  NNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137

Query: 303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAI 362
             VA   G  E+++ L                     L+ GA  +  D  GLT    A I
Sbjct: 138 LIVASKYGRSEIVKKL---------------------LELGADISARDLTGLTAEASARI 176

Query: 363 KGHKHVVLLLIE 374
            G + V+ +  E
Sbjct: 177 FGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  141 bits (358), Expect = 2e-40
 Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 27/171 (15%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
           DK G     +   K+       L      +  +    +T L  A   G    ++ L+E  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC 349
                KD  G +    A     + + E                      LL KG++ N  
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAEK---------------------LLSKGSNVNTK 97

Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           D  G TPL  + I G+  +   L+E GA+V  ++ EG  PL +A + GR E
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  118 bits (298), Expect = 1e-31
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 14/151 (9%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
             E+ +  L+     +E     K  +G + L  A    R      L+      S    ++
Sbjct: 46  GMENAIDKLVENFDKLED----KDIEGSTALIWAVKNNRLGIAEKLL------SKGSNVN 95

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
            +D  G+TPL  ++       +  LLE GA+   +  +G+T L  A+  G   +V+ L+E
Sbjct: 96  TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           +GAD + +D  G +    AR  G  EV+++ 
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  103 bits (259), Expect = 4e-26
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 30/145 (20%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
           G+  +   K+G+            + ++ L         +D   R+   VA   G    +
Sbjct: 1   GSHMD---KNGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAI 51

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
           +                      L++        D  G T L  A       +   L+  
Sbjct: 52  DK---------------------LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90

Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
           G++V  +D  G  PL  ++  G  E
Sbjct: 91  GSNVNTKDFSGKTPLMWSIIFGYSE 115

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 95.1 bits (238), Expect = 3e-23
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            A   N   +   LL  G ++      K   G + L  +  FG +E    L+        
Sbjct: 74  WAVKNNRLGIAEKLLSKGSNVNT----KDFSGKTPLMWSIIFGYSEMSYFLL------EH 123

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
              ++ R+ EG TPL +A         K LLE GAD  A+   G T+  +A   G + ++
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183

Query: 283 EMLIEMGA 290
           ++  E+  
Sbjct: 184 KIFTEVRR 191

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  167 bits (424), Expect = 1e-49
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 33/230 (14%)

Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
           L          L       +I     T    +      + GRT  I S         +  
Sbjct: 20  LYTFEPRTPDELYIEE--GDIIY--ITDMSDTNWWKGTSKGRTGLIPSNY-------VAE 68

Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI-E 287
           + +    PLH A  + ++   +  L++        K G T+L+ A   G + +VEML  +
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347
              +   ++  G +    A  KG+ +++++L                     L KGA T+
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLL---------------------LAKGARTD 167

Query: 348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
             +        +A       ++       A     + E +     +    
Sbjct: 168 LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  161 bits (409), Expect = 1e-47
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 27/206 (13%)

Query: 195 TKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLE 254
            K G  ++  A           L    E   +        T      +K      +  L 
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELY--IEEGDIIYITDMSDTNWWKGTSK-----GRTGLI 61

Query: 255 SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV 314
                  + +     LH AA  G+   +   ++        D  G +    A   GH ++
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
           +E+L                            N  ++ G T LH AA KG+  +V LL+ 
Sbjct: 122 VEML--------------------FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161

Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
            GA  + ++ E      +A       
Sbjct: 162 KGARTDLRNIEKKLAFDMATNAACAS 187

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  141 bits (359), Expect = 3e-40
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 182 RAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV 241
           R GL        + +   + LH AA  G    +   +  +    ++  DK G T L+ A 
Sbjct: 57  RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV--GVNGLDKAGSTALYWAC 114

Query: 242 NKTSIGCAKVLL-ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGR 300
           +       ++L  +   +   + K G T+LH AA  G   +V++L+  GA   +++   +
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174

Query: 301 SCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA 360
             FD+A +     +L+                           A     +         +
Sbjct: 175 LAFDMATNAACASLLKK---------------------KQGTDAVRTLSNAEDYLDDEDS 213

Query: 361 AIKGHKH 367
            ++ H H
Sbjct: 214 DLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  138 bits (350), Expect = 7e-39
 Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 27/176 (15%)

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
                K G+  +  A+          L     D         T+     + G        
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTG 59

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345
           +        + +   +    A  +G++  L                        LD    
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRE---------------------CLDNRVG 98

Query: 346 TNYCDQYGLTPLHIAAIKGHKHVV-LLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            N  D+ G T L+ A   GHK +V +L  +   ++  Q+  G   LH A   G  +
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD 154

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  108 bits (272), Expect = 9e-28
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 7/145 (4%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA   +   +   L   + +        K G + L+ A   G  + +  L   +    L
Sbjct: 79  EAAKRGNLSWLRECLDNRVGVNG----LDKAGSTALYWACHGGHKDIVEMLFT-QPNIEL 133

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           + ++K G T LH A  K      ++LL  GA  + +  + K +   A       +++   
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 287 EMGADPTIKDDRGRSCFDVARDKGH 311
              A  T+ +       + +  + H
Sbjct: 194 GTDAVRTLSNAEDYLDDEDSDLEHH 218

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  168 bits (428), Expect = 1e-49
 Identities = 64/239 (26%), Positives = 97/239 (40%), Gaps = 31/239 (12%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
              D+V  LL  G    ++ + + + GW+ LH A    R + +  L+             
Sbjct: 16  EDVDLVQQLLEGG--ANVNFQEE-EGGWTPLHNAVQMSREDIVELLL------RHGADPV 66

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
            R K G TP  LA    S+   K+ L  GAD       G T+   AA  G  + ++ L +
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL-TAARRGELEGLESLLDK-GAS 345
            GA+  ++         + +             G   L  AA +G +E L+ LLD+ GA 
Sbjct: 127 RGANVNLRRKTKEDQERLRKG------------GATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 346 TNYCDQYGLTPLHIAAIKGH----KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            N CD  G   L  A +       + +  LL++ GADV  +   G  PL LAVE   + 
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  167 bits (426), Expect = 3e-49
 Identities = 64/250 (25%), Positives = 99/250 (39%), Gaps = 45/250 (18%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            A   + ED+V LLLR G   +     + K+G +   +AA  G  + +   +      S 
Sbjct: 45  NAVQMSREDIVELLLRHG--ADPVL--RKKNGATPFLLAAIAGSVKLLKLFL------SK 94

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKD----------GKTSLHN 272
              ++  D  G T    A     +   K L + GA+   + K           G T+L +
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 273 AAANGDRRMVEMLI-EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRG 331
           AA  G   ++++L+ EMGAD    D+ GR+    A        +E               
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE--------------- 199

Query: 332 ELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV-LLLIEFGADVECQDNEGHAPL 390
                  LLD GA  N   + G TPL +A  K H  +V  LL +   ++   D++G   L
Sbjct: 200 --AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

Query: 391 HLAVEGGRVE 400
            LAVE    +
Sbjct: 258 LLAVELKLKK 267

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  167 bits (425), Expect = 5e-49
 Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 35/223 (15%)

Query: 195 TKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE-GRTPLHLAVNKTSIGCAKVLL 253
             +    L  A      + +  L+      +++ +++E G TPLH AV  +     ++LL
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGA--NVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 254 ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE 313
             GAD   + K+G T    AA  G  +++++ +  GAD    D  G + F  A   G ++
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY----------GLTPLHIAAIK 363
            L+                      L  +GA+ N   +           G T L  AA K
Sbjct: 120 ALKF---------------------LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 364 GHKHVV-LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
           GH  V+ +LL E GADV   DN G   L  A+       +  I
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  158 bits (403), Expect = 7e-46
 Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 39/231 (16%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLV-------- 218
           LAA   S  ++ L L  G  +          G++    AA +G+ + +  L         
Sbjct: 78  LAAIAGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

Query: 219 RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL-ESGADKEAKGKDGKTSLHNAAANG 277
           R K  E  +   K G T L  A  K  +   K+LL E GAD  A    G+ +L +A  + 
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193

Query: 278 DRR----MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGEL 333
           D      +  +L++ GAD  ++ +RG++   +A +K H+ +++ L               
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL--------------- 238

Query: 334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
                L  +    N  D  G T L +A     K +  LL + GA  +C D 
Sbjct: 239 -----LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  164 bits (418), Expect = 2e-49
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 21/168 (12%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
               +H    +  +      +E         ++G T L  AAA+G   +VE L++ GADP
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352
            +      S   +A  KG+ +++++                     LLD G   N  D  
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKM---------------------LLDCGVDVNEYDWN 101

Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           G TPL  A    H   V +L+E GAD   + + G+  + LAV  G   
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  155 bits (395), Expect = 3e-46
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 25/190 (13%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYE-SLDCRDKEGRTPLHLAVNKTSIGCAKVLLES 255
                +H  AA G    +++ +   E E  ++  D+EG TPL  A     I   + LL++
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI---EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
           GAD +  GK  +++L  A + G   +V+ML++ G D    D  G +    A    H++ +
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
           ++L                     L+ GA        G   + +A   G++ V  ++   
Sbjct: 119 KML---------------------LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

Query: 376 GADVECQDNE 385
              +     E
Sbjct: 158 LLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  108 bits (273), Expect = 2e-28
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA      +V  LL+ G   ++      K   S L +A + G T+ +  L+       +
Sbjct: 42  WAAAHGQIAVVEFLLQNGADPQL----LGKGRESALSLACSKGYTDIVKMLLDCGV--DV 95

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           +  D  G TPL  AV+   + C K+LLESGAD   +   G  S+  A A G R + +++ 
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155

Query: 287 EMGADPTIKDD 297
                      
Sbjct: 156 SHLLKLLQNIK 166

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  167 bits (426), Expect = 3e-49
 Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 35/238 (14%)

Query: 167 TELAANSED--MVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE 224
                N+     +   L    S +  +      G S  + A A      + +L+      
Sbjct: 3   DLSRINTWKSKQLKSFLS---SKDTFK--ADVHGHSASYYAIADNNVRLVCTLLNAGA-- 55

Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEM 284
                  E   PLH A         K+LL SG D       G T+L+ A  +G+ + V++
Sbjct: 56  --LKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113

Query: 285 LIEMGADPTIKDDRG-RSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
            ++           G ++ F  A     + ++                        L + 
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY---------------------FLSEI 152

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP-LHLAVEGGRVE 400
            S  +     L+ +HI    GH  +++LL+++       ++    P + LA++   +E
Sbjct: 153 PS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE 209

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  152 bits (386), Expect = 2e-43
 Identities = 33/229 (14%), Positives = 63/229 (27%), Gaps = 39/229 (17%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA      +V +LL +GL            G + L+ A   G  + +   V  K+   L
Sbjct: 68  QAATLEDTKIVKILLFSGLDDSQ----FDDKGNTALYYAVDSGNMQTVKLFV--KKNWRL 121

Query: 227 DCRDKEG-RTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
               K G +T  + AV    +      L              + +H    NG   M+ +L
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL 180

Query: 286 IEMGADPTIKDDRGRS-CFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGA 344
           ++        +         +A D   IE+L+ L                          
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL---------------------FKYDI 219

Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
           +         +      +     +  ++IE   + +         +   
Sbjct: 220 NIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKN 261

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.4 bits (215), Expect = 2e-19
 Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 19/148 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE-S 225
            A   N   +VS  L    S             S +H+    G  + +  L+   +Y  S
Sbjct: 135 HAVMLNDVSIVSYFLSEIPSTF-----DLAILLSCIHITIKNGHVDMMILLL---DYMTS 186

Query: 226 LDCRDKEGRTP-LHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEM 284
            +  +     P + LA++   I   + L +   +  +                D  + +M
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA-------NLENVLLDDAEIAKM 239

Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHI 312
           +IE   +                    I
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKNNKLDEI 267

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  161 bits (411), Expect = 5e-48
 Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 30/215 (13%)

Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
           +KT +  + L  A      +    L        +D  D EG TPL++AV+   I  AK L
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQ--DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGA-DPTIKDDRGRSCFDVARDKGH 311
           ++ GAD   +     +    A A G   ++  +++    D    +  G +    A +KGH
Sbjct: 59  IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKG-ASTNYCDQYGLTPLHIAAI-----KGH 365
           I+ +++                     LL+ G    ++ + +G T L  A       + +
Sbjct: 119 IDNVKL---------------------LLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157

Query: 366 KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           + +V LL+E GAD   +DN G   +  A + G  E
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  138 bits (351), Expect = 3e-39
 Identities = 32/214 (14%), Positives = 77/214 (35%), Gaps = 42/214 (19%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
           +++ +  +L      ++        +G + L++A      E   +L+           ++
Sbjct: 17  DTKKVKEILQDTTYQVDE----VDTEGNTPLNIAVHNNDIEIAKALI------DRGADIN 66

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
            ++    +P   A  +        +L+    D     + G  +L  AA  G    V++L+
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126

Query: 287 EMG-ADPTIKDDRGRS-----CFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLL 340
           E G  D   ++D G +           ++ + +++++L                     +
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL---------------------M 165

Query: 341 DKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
           + GA  +  D  G T +  A  KG+  +  +L +
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  160 bits (408), Expect = 7e-48
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 28/204 (13%)

Query: 195 TKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLE 254
           + +   ++      G    +   +   E + L+  D  G +PLH A  +      ++L+ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTEND-LNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 255 SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV 314
            GA      +   T LH AA++G R +V+ L++  AD    ++ G      A   G  +V
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120

Query: 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
            E L                     +  GA  + C++YG  P+  A     + +     +
Sbjct: 121 AEDL---------------------VANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

Query: 375 FGADVECQDNEGHAPLHLAVEGGR 398
            G ++    N    P       G 
Sbjct: 160 MGQNL----NR--IPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  156 bits (396), Expect = 4e-46
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 22/172 (12%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEMLIEM 288
             E    +     + +    ++ L++   D       G + LH A   G   +VEMLI  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNY 348
           GA   + +    +   +A   GH ++++ L                     L   A  N 
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKL---------------------LQYKADINA 100

Query: 349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            +++G  PLH A   G   V   L+  GA V   +  G  P+  A    R  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  131 bits (332), Expect = 8e-37
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 40/198 (20%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
            +   V L L      ++++      G+S LH A   GR+  +  L+           ++
Sbjct: 16  GNAVAVRLWLDNT-ENDLNQ--GDDHGFSPLHWACREGRSAVVEMLI------MRGARIN 66

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
             ++   TPLHLA +       + LL+  AD  A  + G   LH A   G  ++ E L+ 
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347
            GA  +I +  G    D A+      + E                          G + N
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRER---------------------AEKMGQNLN 165

Query: 348 YCDQYGLTPLHIAAIKGH 365
                   P      KG 
Sbjct: 166 R------IPYKDTFWKGT 177

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  165 bits (421), Expect = 2e-47
 Identities = 52/251 (20%), Positives = 88/251 (35%), Gaps = 48/251 (19%)

Query: 172 NSEDMVSLLLRAGLSIEIDER----VKTKDGWSELHVAAAFGRTEEISSLVRMKEYES-- 225
           +S +    L+       I           D  + L +A    R   ++ L+         
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM------KAG 189

Query: 226 --LDCRDKEGRTPLHLAVNKTSIGCAKVLLE---SGADKEAKGKDGKTSLHNAAANGDR- 279
                 +K  R+ LH A      G    +L       D E   ++G T+L   A N  R 
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 249

Query: 280 --RMVEMLIEMGAD--------PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
                ++L+E GA            +  +GR+    A    ++ +++ L           
Sbjct: 250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL----------- 298

Query: 330 RGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
                    + +KG++ +  D+ G TP+ +AA +G   VV+ LI+ GA VE  D   H  
Sbjct: 299 ---------VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349

Query: 390 LHLAVEGGRVE 400
             LA       
Sbjct: 350 RQLAQANNHHN 360

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  155 bits (395), Expect = 9e-44
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 40/227 (17%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
           LA       +V+ L++AG    I      K   S LH AAA      +  ++   + +  
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTI----YNKSERSALHQAAANRDFGMMVYMLNSTKLKGD 227

Query: 226 LDCRDKEGRTPLHLAV---NKTSIGCAKVLLESGAD--------KEAKGKDGKTSLHNAA 274
           ++  D+ G T L +      +  +  AK+L+E GA         K+++   G+T+LH AA
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287

Query: 275 ANGDRRMVEMLI-EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGEL 333
              +  +V+ L+ E G++   +D+ G++   +A  +G IEV+  L               
Sbjct: 288 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL--------------- 332

Query: 334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
                 + +GAS    D    T   +A    H ++V +      + E
Sbjct: 333 ------IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  153 bits (388), Expect = 9e-43
 Identities = 30/211 (14%), Positives = 52/211 (24%), Gaps = 26/211 (12%)

Query: 190 DERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCA 249
                       L  A+  G  +   + +                 P        +    
Sbjct: 29  KNHQSITSSQHSLLEASYDGYIKRQRNEL-----------QHYSLYPNPQGYGNGNDFLG 77

Query: 250 KVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
                +         +    LH   A G   + E +     +  I     R+        
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLH-TEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASN 135

Query: 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
              E  E L              +   +  +  GA  N  D    TPL +A +   + +V
Sbjct: 136 SSAEKSEDLI-------------VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
             L++ GAD    +    + LH A       
Sbjct: 183 AYLMKAGADPTIYNKSERSALHQAAANRDFG 213

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  147 bits (372), Expect = 2e-40
 Identities = 34/236 (14%), Positives = 60/236 (25%), Gaps = 38/236 (16%)

Query: 180 LLRAGL--SIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPL 237
           LL A     I+                    G            +       + E    L
Sbjct: 41  LLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQI--PTEPEPESPIKL 98

Query: 238 HLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI--------EMG 289
           H      S    + +     +     +  +T LH  A+N      E LI          G
Sbjct: 99  HTEAAG-SYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC 349
           AD    D    +   +A       ++  L                     +  GA     
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYL---------------------MKAGADPTIY 195

Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIE---FGADVECQDNEGHAPLHLAVEGGRVEPL 402
           ++   + LH AA      +++ ++       D+E  D  G   L +       + +
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (298), Expect = 5e-30
 Identities = 26/179 (14%), Positives = 45/179 (25%), Gaps = 31/179 (17%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
           +K  +    +  ++ S+  A         +                NG+  + +      
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNL 84

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC 349
             PT  +             G   + E                      +  +  +    
Sbjct: 85  QIPTEPEPESPIKLHTEA-AGSYAITEP---------------------ITRESVNIID- 121

Query: 350 DQYGLTPLHIAAIKGHK--------HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            ++  T LH  A             H     I  GADV   D + + PL LAV   R  
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  158 bits (403), Expect = 3e-47
 Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGA 257
               +H  AA G  +++   +R K    ++  D+ G TPL  A     I   + LLE GA
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLR-KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 258 DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEV 317
           D     K+ +++L  A+  G   +V +L+E   D  I D  G +    A    H++ +E 
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 318 LQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
           L                     L +GA        G TP+ +A   G++ V  ++     
Sbjct: 121 L---------------------LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

Query: 378 DVECQDNEGHAP 389
            +   +     P
Sbjct: 160 KLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  158 bits (403), Expect = 3e-47
 Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKE-AKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
               +H    +  +   K  L  G +      + G T L  A+A G+   V  L+E GAD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
           P I      S   +A   G+ +++ +L                     L++    N  D 
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLL---------------------LERDVDINIYDW 100

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            G TPL  A    H   V  L+  GAD+  + + G+ P+ LAV  G  +
Sbjct: 101 NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  127 bits (322), Expect = 2e-35
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 42/197 (21%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
             A     D +   LR G    +++    + G++ L  A+AFG  E     VR      L
Sbjct: 8   QLAAQGELDQLKEHLRKG-DNLVNK--PDERGFTPLIWASAFGEIE----TVRF-----L 55

Query: 227 -------DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR 279
                      KE  + L LA          +LLE   D      +G T L  A      
Sbjct: 56  LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV 115

Query: 280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESL 339
           + VE L+  GAD T + D G +  D+A   G+ +V +V                     +
Sbjct: 116 KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV---------------------I 154

Query: 340 LDKGASTNYCDQYGLTP 356
            +        +     P
Sbjct: 155 ENHILKLFQSNLVPADP 171

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  160 bits (407), Expect = 4e-47
 Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 34/232 (14%)

Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
           A + +++  +      +      +     + LH+A    + E   +L+        + RD
Sbjct: 22  ALTMEVIRQVKGDLAFLNF----QNNLQQTPLHLAVITNQPEIAEALLGAGC--DPELRD 75

Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESGADK------EAKGKDGKTSLHNAAANGDRRMVEM 284
             G TPLHLA  +  +    VL +S          +A   +G T LH A+ +G   +VE+
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135

Query: 285 LIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           L+ +GAD   ++   GR+   +A D  + +++ +L                     L  G
Sbjct: 136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL---------------------LKCG 174

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
           A  N     G +P  +   +    +   L +   +      E         E
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  148 bits (376), Expect = 2e-42
 Identities = 52/210 (24%), Positives = 76/210 (36%), Gaps = 51/210 (24%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRM--KEYESLDCRDKEGRTPLHLAVNKTSIGCAKV 251
            T+DG S LH+A           ++R    +   L+ ++   +TPLHLAV       A+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 252 LLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311
           LL +G D E +   G T LH A   G    V +L +    P +                 
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI-------------- 109

Query: 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLL 371
                                                 +  G T LH+A+I G+  +V L
Sbjct: 110 ----------------------------------LKATNYNGHTCLHLASIHGYLGIVEL 135

Query: 372 LIEFGADVECQDN-EGHAPLHLAVEGGRVE 400
           L+  GADV  Q+   G   LHLAV+    +
Sbjct: 136 LVSLGADVNAQEPCNGRTALHLAVDLQNPD 165

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  136 bits (345), Expect = 5e-38
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 32/208 (15%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVR----MKE 222
           LA   N  ++   LL AG   E+    +   G + LH+A   G    +  L +       
Sbjct: 51  LAVITNQPEIAEALLGAGCDPEL----RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106

Query: 223 YESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK-GKDGKTSLHNAAANGDRRM 281
           +  L   +  G T LHLA     +G  ++L+  GAD  A+   +G+T+LH A    +  +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166

Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD 341
           V +L++ GAD      +G S + +   +    + + L                       
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL---------------------GQ 205

Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVV 369
                                       
Sbjct: 206 LTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  116 bits (292), Expect = 3e-30
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 31/152 (20%)

Query: 259 KEAKGKDGKTSLHNAAANGDRR----MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV 314
           K+   +DG + LH A  + ++     ++  +    A    +++  ++   +A      E+
Sbjct: 1   KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60

Query: 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
            E                      LL  G      D  G TPLH+A  +G    V +L +
Sbjct: 61  AEA---------------------LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99

Query: 375 FGAD------VECQDNEGHAPLHLAVEGGRVE 400
                     ++  +  GH  LHLA   G + 
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  111 bits (280), Expect = 1e-28
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 17/158 (10%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERV--KTKDGWSELHVAAAFGRTEEISSLVR----- 219
           LA        V +L ++  +  +   +     +G + LH+A+  G    +  LV      
Sbjct: 84  LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143

Query: 220 -MKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD 278
             +E          GRT LHLAV+  +     +LL+ GAD       G +          
Sbjct: 144 NAQE-------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 196

Query: 279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
            R+ + L ++  +                +    E  E
Sbjct: 197 TRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  155 bits (394), Expect = 7e-46
 Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 21/177 (11%)

Query: 224 ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVE 283
                   +    L  A         ++L+ +GAD  A+   G T LH AA NG   +VE
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 284 MLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
           +L++ GAD    D  G +   +A   GH+E++EVL                     L  G
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL---------------------LKNG 103

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           A  N  D  G TPLH+AA+ GH  +V +L++ GADV  QD  G     ++++ G  +
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  143 bits (363), Expect = 2e-41
 Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 31/183 (16%)

Query: 196 KDGWSELHVAAAFGRTEEISSLVRMKEYES----LDCRDKEGRTPLHLAVNKTSIGCAKV 251
            D   +L  AA  GR +E+  L+      +    ++  D  G TPLHLA     +   +V
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILM------ANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 252 LLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311
           LL++GAD  A    G T L  AA  G   +VE+L++ GAD    D  G +   +A   GH
Sbjct: 66  LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125

Query: 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLL 371
           +E++EVL                     L  GA  N  D++G T   I+   G++ +  +
Sbjct: 126 LEIVEVL---------------------LKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 372 LIE 374
           L +
Sbjct: 165 LQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  119 bits (302), Expect = 1e-32
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 16/156 (10%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            AA    +D V +L+  G  +      +   GW+ LH+AA  G  E +  L+        
Sbjct: 20  EAARAGRDDEVRILMANGADVNA----EDASGWTPLHLAAFNGHLEIVEVLL------KN 69

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
              ++  D  G TPL LA     +   +VLL++GAD  A   +G T LH AA  G   +V
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV 129

Query: 283 EMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           E+L++ GAD   +D  G++ FD++ D G+ ++ E+L
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 93.2 bits (233), Expect = 8e-23
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 16/125 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
           LAA     ++V +LL+ G  +          G + L +AA FG  E +  L+        
Sbjct: 53  LAAFNGHLEIVEVLLKNGADVNA----VDHAGMTPLRLAALFGHLEIVEVLL------KN 102

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
              ++  D EG TPLHLA     +   +VLL++GAD  A+ K GKT+   +  NG+  + 
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162

Query: 283 EMLIE 287
           E+L +
Sbjct: 163 EILQK 167

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  155 bits (393), Expect = 6e-45
 Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 35/215 (16%)

Query: 196 KDGWSELHVAAAFGRTEEISSLV----RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKV 251
             G   L         +  S  +    R+K        +      L  +  +      + 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-------NPLPLALLLDSSLEGEFDLVQR 55

Query: 252 LLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311
           ++    D      +G T+LHNA   G   +V+ L++ G +    D  G +    A    +
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115

Query: 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGA---STNYCDQYGLTPLHIAAIKGHKHV 368
           ++V +                      L++ GA   +  Y D            +G+   
Sbjct: 116 VQVCKF---------------------LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 369 VLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLL 403
              L      +   +      L         E  +
Sbjct: 155 SQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM 189

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  143 bits (363), Expect = 1e-40
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 25/174 (14%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
           +  G+  L               +  G   +         L +++  G+  +V+ +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC 349
            DP++ +D G +    A   GH E+++                      L+  G + N  
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKF---------------------LVQFGVNVNAA 99

Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN---EGHAPLHLAVEGGRVE 400
           D  G TPLH AA   +  V   L+E GA V        +  A     +E G  +
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  141 bits (358), Expect = 8e-40
 Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 50/249 (20%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
           N     S  +  G+ ++ +         + L  ++  G  + +  ++   E +     + 
Sbjct: 16  NLRKTGSERIAHGMRVKFN-----PLPLALLLDSSLEGEFDLVQRII--YEVDDPSLPND 68

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           EG T LH AV        K L++ G +  A   DG T LH AA+  + ++ + L+E GA 
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 292 P---TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNY 348
               T  D +  +      ++G+ +  +                      L         
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQF---------------------LYGVQEKMGI 167

Query: 349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGADV----------------ECQDNEGHAPLHL 392
            ++  +  L     +       L ++ G  +                   D EG+ P +L
Sbjct: 168 MNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNL 224

Query: 393 AVEGGRVEP 401
                R++P
Sbjct: 225 LGLYPRIKP 233

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 12/148 (8%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK-EYES 225
            A      ++V  L++ G+++         DGW+ LH AA+    +    LV       +
Sbjct: 76  NAVCAGHTEIVKFLVQFGVNVN----AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           +   D +        + +    C++ L           K    +L +     D    E+ 
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND---DELP 188

Query: 286 IEMGADPTI--KDDRGRSCFDVARDKGH 311
           ++ G   TI  ++D     +  AR    
Sbjct: 189 MKEGDCMTIIHREDEDEIEWWWARLNDK 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  151 bits (384), Expect = 9e-44
 Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 40/222 (18%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYESL-------DCRDKEGRTPLHLAVNKTSIGCAKVLLE 254
           L +AA     + +S L        L         R   G T LH+A    ++  A VL+E
Sbjct: 7   LLLAAKENDVQALSKL--------LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 255 SGAD-----KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
           +  +       ++  +G+T+LH A  N +  +V  L+  GA  + +       +      
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 310 GHIEVLEVLQRGEAVL-TAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHV 368
            +         GE  L  AA  G  E +  L++ GA     D  G T LHI  ++ +K  
Sbjct: 119 YY---------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTF 169

Query: 369 VL----LLIEFGADV------ECQDNEGHAPLHLAVEGGRVE 400
                 LL+ +             +N+G  P  LA   G + 
Sbjct: 170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV 211

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  138 bits (349), Expect = 1e-38
 Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 40/187 (21%)

Query: 233 GRTPLHLAVNKTSIGC-AKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
             +PL LA  +  +   +K+L   G +   +G  G+T+LH AA   +     +L+E   +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 292 -----PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
                 T +   G++   +A    ++ ++  L                     L +GAS 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRAL---------------------LARGASV 101

Query: 347 N-------------YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
           +                 YG  PL  AA  G + +V LLIE GAD+  QD+ G+  LH+ 
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161

Query: 394 VEGGRVE 400
           +      
Sbjct: 162 ILQPNKT 168

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 352 YGLTPLHIAAIKGH-KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
              +PL +AA +   + +  LL   G +V  +   G   LH+A     +E
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLE 51

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  152 bits (385), Expect = 5e-44
 Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 24/217 (11%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEY-----ESLDCRDKEGRTPLHLAVNKTSIGC 248
                    ++A +    E       +KE            D++ RT LH A +      
Sbjct: 3   GCVSNIMICNLAYSGKLDE-------LKERILADKSLATRTDQDSRTALHWACSAGHTEI 55

Query: 249 AKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARD 308
            + LL+ G     K   G + LH AA+ G   +V+ L+  GA     +  G +    A  
Sbjct: 56  VEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115

Query: 309 KGHIEVLEVL------------QRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP 356
           K   E+  +L                A+  AA +G L+ +  LL   ASTN  D  G TP
Sbjct: 116 KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP 175

Query: 357 LHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
           LH+A  +        L+  GA +  ++ E   PL +A
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  130 bits (329), Expect = 6e-36
 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 31/213 (14%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            A      ++V  LL+ G  + +++  K   GWS LH+AA+ G  E + +L+   +   +
Sbjct: 46  WACSAGHTEIVEFLLQLG--VPVND--KDDAGWSPLHIAASAGXDEIVKALL--VKGAHV 99

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           +  ++ G TPLH A +K     A +LLE GA+ +AK     T++H AAA G+ +MV +L+
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
              A   I+D  G +   +A D+  +E  +                      L+ +GAS 
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKF---------------------LVTQGASI 198

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379
              ++   TPL +A   G   ++L  +  G + 
Sbjct: 199 YIENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.0 bits (218), Expect = 3e-20
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 327 AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386
           A      E  E +L   +     DQ   T LH A   GH  +V  L++ G  V  +D+ G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73

Query: 387 HAPLHLAVEGGRVEPLLFI 405
            +PLH+A   G  E +  +
Sbjct: 74  WSPLHIAASAGXDEIVKAL 92

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.1 bits (208), Expect = 7e-19
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           L  A S G    VK++L +     A +++        +    + N  ++  +LL  G + 
Sbjct: 77  LHIAASAGXDEIVKALLVKG----AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG 247
           +     K     + +H AAA G  + +  L+  K   S + +D EG TPLHLA ++  + 
Sbjct: 133 D----AKDHYDATAMHRAAAKGNLKMVHILLFYKA--STNIQDTEGNTPLHLACDEERVE 186

Query: 248 CAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTI 294
            AK L+  GA    + K+ KT L  A       ++   +  G + ++
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLG--LILKRLAEGEEASM 231

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  152 bits (385), Expect = 6e-44
 Identities = 42/227 (18%), Positives = 70/227 (30%), Gaps = 28/227 (12%)

Query: 177 VSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTP 236
           +  +LR   S     R +  +    L  AA  G  E +   V  KE       ++EG T 
Sbjct: 1   MRSVLRKAGSPRKARRAR-LNPLVLLLDAALTGELEVVQQAV--KEMNDPSQPNEEGITA 57

Query: 237 LHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD 296
           LH A+   +      L+ +GA+  +    G T LH AA+  D  +   L++ GA      
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117

Query: 297 DR-GRSCFDVARD--KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353
              G + F+      +G+ +                         L D   S    +   
Sbjct: 118 LSDGATAFEKCDPYREGYADCATY---------------------LADVEQSMGLMNSGA 156

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           +  L   +       +         V  +D         A   G+  
Sbjct: 157 VYALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  131 bits (333), Expect = 2e-36
 Identities = 26/176 (14%), Positives = 47/176 (26%), Gaps = 24/176 (13%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
               L  A     +   +  ++   D     ++G T+LHNA    +  +V+ LI  GA+ 
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCD-Q 351
              D  G +    A       +                        L+  GA+       
Sbjct: 81  NSPDSHGWTPLHCAASCNDTVICMA---------------------LVQHGAAIFATTLS 119

Query: 352 YGLTPLHIAAI--KGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
            G T         +G+      L +    +   ++     L         E     
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFRE 175

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 15/108 (13%), Positives = 27/108 (25%), Gaps = 8/108 (7%)

Query: 166 ATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES 225
                    D  + L     S+ +            L   +A    +E+    R  E  +
Sbjct: 128 CDPYREGYADCATYLADVEQSMGL----MNSGAVYALWDYSA-EFGDEL--SFREGESVT 180

Query: 226 LDCRDKEGRTPLHLAVNKTSIGC-AKVLLESGADKEAKGKDGKTSLHN 272
           +  RD    T    A      G   +         + +    K   H+
Sbjct: 181 VLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHHH 228

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  148 bits (376), Expect = 2e-43
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 23/170 (13%)

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
                L  A  +  +     LL++  +  A+   G+T+L      G+  +   L+  GA+
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGAN 62

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
           P +KD  G +    A   G ++ L+ L                     L+  A  N  D 
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTL---------------------LEFQADVNIEDN 101

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGA-DVECQDNEGHAPLHLAVEGGRVE 400
            G  PLH+AA +GH  VV  L++  A +V  ++++G     LA   GR E
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  139 bits (353), Expect = 5e-40
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 33/188 (17%)

Query: 195 TKDGWSELHVAAAFGRTEEISSLVRMKEYES----LDCRDKEGRTPLHLAVNKTSIGCAK 250
            +   +EL  AAA G  E+++SL+           ++ ++  GRT L +     +   A+
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLL------QNNVNVNAQNGFGRTALQVMKLG-NPEIAR 54

Query: 251 VLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKG 310
            LL  GA+ + K + G   +H+AA  G    ++ L+E  AD  I+D+ G     +A  +G
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114

Query: 311 HIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST-NYCDQYGLTPLHIAAIKGHKHVV 369
           H+ V+E L                     +   AS   + +  G T   +A + G   VV
Sbjct: 115 HLRVVEFL---------------------VKHTASNVGHRNHKGDTACDLARLYGRNEVV 153

Query: 370 LLLIEFGA 377
            L+   GA
Sbjct: 154 SLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  111 bits (281), Expect = 2e-29
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            AA     + ++ LL+  +++      +   G + L      G  E    L+        
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNA----QNGFGRTALQ-VMKLGNPEIARRLL------LR 59

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
               D +D+ G   +H A     +   + LLE  AD   +  +G   LH AA  G  R+V
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 283 EMLIEMGA-DPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           E L++  A +   ++ +G +  D+AR  G  EV+ ++
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  148 bits (376), Expect = 3e-43
 Identities = 48/168 (28%), Positives = 65/168 (38%), Gaps = 22/168 (13%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM 288
           + E    L  A     +   K L      +         T LH AA      +VE L++ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNY 348
           GAD   KD  G      A   GH EV E+L                     +  GA  N 
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELL---------------------VKHGAVVNV 103

Query: 349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
            D +  TPLH AA KG   +  LL++ GAD   ++ +G+ PL L  +G
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  139 bits (354), Expect = 4e-40
 Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 27/184 (14%)

Query: 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK--EGRTPLHLAVNKTSIGCAKVLL 253
            +   +L  AA  G  E +  L      +S++CRD      TPLH A     +   + LL
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 254 ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE 313
           + GAD  AK K G   LHNA + G   + E+L++ GA   + D    +    A  KG  E
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

Query: 314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI 373
           + ++                     LL  GA     ++ G TPL +    G   +  LL 
Sbjct: 123 ICKL---------------------LLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR 160

Query: 374 EFGA 377
              A
Sbjct: 161 GDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  116 bits (293), Expect = 3e-31
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 16/156 (10%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            AA     + V  L        ++ R       + LH AA + R   +  L+        
Sbjct: 14  EAAKAGDVETVKKLCTVQ---SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL------QH 64

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
              +  +DK G  PLH A +      A++L++ GA          T LH AAA G   + 
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124

Query: 283 EMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           ++L++ GADPT K+  G +  D+ +  G  ++ ++L
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  114 bits (287), Expect = 2e-30
 Identities = 39/146 (26%), Positives = 52/146 (35%), Gaps = 25/146 (17%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARDKGHIEV 314
           GA       +    L  AA  GD   V+ L  +   +    + R  +    A     + V
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
           +E L                     L  GA  +  D+ GL PLH A   GH  V  LL++
Sbjct: 58  VEYL---------------------LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96

Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
            GA V   D     PLH A   G+ E
Sbjct: 97  HGAVVNVADLWKFTPLHEAAAKGKYE 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  146 bits (371), Expect = 8e-43
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 21/169 (12%)

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
               +     L  A  +  +   + LLE+GA+  A    G+  +      G  R+ E+L+
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARVAELLL 64

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
             GA+P   D    +                      V  AAR G L+ L  L   GA  
Sbjct: 65  LHGAEPNCADPATLT--------------------RPVHDAAREGFLDTLVVLHRAGARL 104

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
           +  D +G  P+ +A   GH+ V   L          ++          +
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  126 bits (320), Expect = 2e-35
 Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 25/149 (16%)

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
           +E  A   +  +     L  AAA G    V  L+E GA+P   +  GR    V    G  
Sbjct: 1   MEPAAG--SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLT-PLHIAAIKGHKHVVLL 371
            V E+L                     L  GA  N  D   LT P+H AA +G    +++
Sbjct: 58  RVAELL---------------------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

Query: 372 LIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           L   GA ++ +D  G  P+ LA E G  +
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRD 125

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSE-LHVAAAFGRTEEISSLVRMKEYESLDC 228
              S  +  LLL  G               +  +H AA  G  + +  L R      LD 
Sbjct: 53  MMGSARVAELLLLHGAEPN----CADPATLTRPVHDAAREGFLDTLVVLHRAGA--RLDV 106

Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVE 283
           RD  GR P+ LA        A+ L  +          G       AA G   + +
Sbjct: 107 RDAWGRLPVDLAEELGHRDVARYLRAAAGG-----TRGSNHARIDAAEGPSDIPD 156

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  148 bits (375), Expect = 3e-42
 Identities = 45/209 (21%), Positives = 69/209 (33%), Gaps = 31/209 (14%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
              +G  E  +    G +           Y + D    E  TP   A  K        LL
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSS----YIAADV-VSEYETPWWTAARKADEQALSQLL 65

Query: 254 ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR-GRSCFDVARDKGHI 312
           E   D +A  ++G+T+L   A  G  + V +L E GAD   +D R G +   +A      
Sbjct: 66  E-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
           EV+E                      L++ GA     D+ GLT L +A            
Sbjct: 125 EVVEA---------------------LVELGADIEVEDERGLTALELAREILKTTPKGNP 163

Query: 373 IEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           ++FG  +  +       +         E 
Sbjct: 164 MQFGRRIGLEKV---INVLEGQVFEYAEV 189

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  136 bits (345), Expect = 6e-38
 Identities = 45/238 (18%), Positives = 71/238 (29%), Gaps = 52/238 (21%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            AA    E  +S LL      ++D     ++G + L   A  G  + +  L         
Sbjct: 51  TAARKADEQALSQLL-ED--RDVDA--VDENGRTALLFVAGLGSDKCVRLLA------EA 99

Query: 226 ---LDCRDKE-GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM 281
              LD RD   G T LH+A         + L+E GAD E + + G T+L  A        
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 159

Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD 341
               ++ G    ++                            VL        E  E +  
Sbjct: 160 KGNPMQFGRRIGLEKVI------------------------NVLEGQVFEYAEVDEIVEK 195

Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
           +G         G    ++   K       +     A+   +D E    L  AV    +
Sbjct: 196 RGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.4 bits (246), Expect = 7e-24
 Identities = 32/169 (18%), Positives = 49/169 (28%), Gaps = 45/169 (26%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
           G     +  ++                     +G         +G          + AD 
Sbjct: 1   GEVNKIIG-SR------------------TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD- 40

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352
                   +                        TAAR+ + + L  LL +    +  D+ 
Sbjct: 41  --VVSEYET---------------------PWWTAARKADEQALSQLL-EDRDVDAVDEN 76

Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNE-GHAPLHLAVEGGRVE 400
           G T L   A  G    V LL E GAD++ +D   G   LH+A    R E
Sbjct: 77  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (367), Expect = 3e-42
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 24/177 (13%)

Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGA 257
               L  AAA G  +E+  L+  +E    D  ++ G+T L + +   S   A  LL+ GA
Sbjct: 2   AGDRLSGAAARGDVQEVRRLL-HRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGA 59

Query: 258 DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEV 317
               +   G + +H+AA  G    +++L+E GAD  + D  G     +A  +GH  V+  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS- 118

Query: 318 LQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
                                 L   +  +  D  GLTPL +A  +G + +V +L  
Sbjct: 119 ---------------------FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  143 bits (364), Expect = 9e-42
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 24/169 (14%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
               L  A  +  +   + LL       +A  + GKT+L      G   +   L++ GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGAS 60

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
           P ++D  G S    A   G ++ L+VL                     ++ GA  N  D 
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVL---------------------VEHGADVNVPDG 99

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            G  P+H+A  +GH  VV  L    +D+  +D  G  PL LA++ G  +
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQD 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (284), Expect = 4e-30
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 16/151 (10%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
           + +++  LL R    +  D     + G + L     FG T     L+            +
Sbjct: 14  DVQEVRRLLHREL--VHPDA--LNRFGKTALQ-VMMFGSTAIALELL------KQGASPN 62

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
            +D  G +P+H A     +   KVL+E GAD       G   +H A   G   +V  L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
             +D   +D RG +  ++A  +G  +++++L
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  143 bits (364), Expect = 1e-41
 Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           +    L  A         ++L+ +GA        G + LH AA  G     E+L+  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
              +    R+   +A  +GH  ++EVL                     L  GA  N  D 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVL---------------------LKHGADVNAKDM 98

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
             +T LH A    H+ VV LLI++GADV  Q         ++++ G  +
Sbjct: 99  LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  135 bits (344), Expect = 7e-39
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 24/176 (13%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG 256
           D   +L  AA  G+ +E+  L+      +    D  G +PLHLA         +VLL +G
Sbjct: 1   DLGKKLLEAARAGQDDEVRILM---ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 257 ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
             ++A+ K  +T LH AA+ G   +VE+L++ GAD   KD    +    A +  H EV+E
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 317 VLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
           +L                     +  GA  +   ++  T   I+   G++ +  +L
Sbjct: 118 LL---------------------IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  123 bits (312), Expect = 3e-34
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
            AA    +D V +L+  G             G S LH+AA +G       L+R     S 
Sbjct: 8   EAARAGQDDEVRILMANGAPFT-----TDWLGTSPLHLAAQYGHFSTTEVLLRAGV--SR 60

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
           D R K  RTPLH+A ++      +VLL+ GAD  AK     T+LH A  +  + +VE+LI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
           + GAD   +    ++ FD++ D G+ ++ E+LQ
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  144 bits (366), Expect = 1e-41
 Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 26/173 (15%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
             EG     +                 AD  ++ +   T    AA   D + +  L+E  
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLLE-D 66

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC 349
            D    D+ GR+        G  + + +L                      + GA  ++ 
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRLL---------------------AEAGADLDHR 105

Query: 350 DQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
           D   GLT LH+AA      VV  L+E GAD+E +D  G   L LA E  +  P
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  142 bits (360), Expect = 9e-41
 Identities = 47/197 (23%), Positives = 70/197 (35%), Gaps = 28/197 (14%)

Query: 188 EIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIG 247
           +I       +G  E  +    G +           Y + D    E  TP   A  K    
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPS----WVPSSYIAADV-VSEYETPWWTAARKADEQ 58

Query: 248 CAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
               LLE   D +A  ++G+T+L   A  G  + V +L E GAD   +D RG        
Sbjct: 59  ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-------- 109

Query: 308 DKGHIEVLEVLQRGEAVL-TAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHK 366
                        G   L  AA     E +E+L++ GA     D+ GLT L +A      
Sbjct: 110 -------------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 156

Query: 367 HVVLLLIEFGADVECQD 383
                 ++FG  +  + 
Sbjct: 157 TPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 95.6 bits (239), Expect = 2e-23
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            AA    E  +S LL     ++       ++G + L   A  G  + +  L         
Sbjct: 50  TAARKADEQALSQLL-EDRDVDA----VDENGRTALLFVAGLGSDKCVRLLA------EA 98

Query: 226 ---LDCRD-KEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRM 281
              LD RD + G T LH+A         + L+E GAD E + + G T+L  A        
Sbjct: 99  GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158

Query: 282 VEMLIEMGADPTIKD 296
               ++ G    ++ 
Sbjct: 159 KGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 10/59 (16%), Positives = 14/59 (23%), Gaps = 3/59 (5%)

Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
                +     G     I    GH    +      ADV    +E   P   A      +
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQ 58

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  139 bits (354), Expect = 2e-40
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 21/152 (13%)

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286
                     L  A  +  +   + LLE+GAD  A  + G+  +      G  ++ E+L+
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ-VMMMGSAQVAELLL 64

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
             GA+P   D    +                      V  AAR G L+ L  L   GA  
Sbjct: 65  LHGAEPNCADPATLT--------------------RPVHDAAREGFLDTLVVLHRAGARL 104

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
           + CD +G  P+ +A  +GH+ +   L     D
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  132 bits (334), Expect = 1e-37
 Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 23/146 (15%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
                  G      L  AAA G    V  L+E GADP   +  GR    V    G  +V 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLT-PLHIAAIKGHKHVVLLLIE 374
           E+L                     L  GA  N  D   LT P+H AA +G    +++L  
Sbjct: 61  ELL---------------------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR 99

Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
            GA ++  D  G  P+ LA E G  +
Sbjct: 100 AGARLDVCDAWGRLPVDLAEEQGHRD 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 94.4 bits (236), Expect = 2e-23
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 12/127 (9%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE-S 225
            AA     + V  LL AG           + G   + V    G  +    L+    +   
Sbjct: 18  TAAARGQVETVRQLLEAGADPNA----LNRFGRRPIQVMM-MGSAQVAELLL---LHGAE 69

Query: 226 LDCRDKEGRT-PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEM 284
            +C D    T P+H A  +  +    VL  +GA  +     G+  +  A   G R +   
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 285 LIEMGAD 291
           L     D
Sbjct: 130 LHAATGD 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  140 bits (356), Expect = 3e-40
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 21/198 (10%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMK-EYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
                +  +  AA  G  E+   L     E +    +       L    ++     +  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 253 LESGADKEAKGKDGKTSLHNAAANG------DRRMVEMLIEMGADPTIKDDRGRSCFDVA 306
           +  GAD +++ K+G T        G         + ++ +E GAD T      +      
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 307 RDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHK 366
                ++  E++   + +                  G      D++GLT L         
Sbjct: 122 IFNYFVDENEMIPLYKLIF--------------SQSGLQLLIKDKWGLTALEFVKRCQKP 167

Query: 367 HVVLLLIEFGADVECQDN 384
             + ++ ++      ++N
Sbjct: 168 IALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  130 bits (329), Expect = 3e-36
 Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 25/180 (13%)

Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESGAD-KEAKGKD--GKTSLHNAAANGDRRMVEMLIE 287
                 +  A    +      L E G + KE+  K       L N       ++   LI 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347
            GAD   +   G + F      G  ++                   E  +  L+KGA   
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITG---------------TTELCKIFLEKGADIT 108

Query: 348 YCDQYGLTPLHIAAIKGHK-------HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
              +     +                   L+  + G  +  +D  G   L       +  
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  101 bits (254), Expect = 1e-25
 Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 29/162 (17%)

Query: 261 AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
           +       ++  AA  G       L E G +   K+   +S         +         
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNI------LYD-------- 44

Query: 321 GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVL------LLIE 374
              +         +    L++KGA      + G T        G   +        + +E
Sbjct: 45  --VLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE-----PLLFIWLKQWG 411
            GAD+          +   +    V+     PL  +   Q G
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG 144

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 99.4 bits (248), Expect = 8e-25
 Identities = 21/189 (11%), Positives = 54/189 (28%), Gaps = 32/189 (16%)

Query: 128 LRHAVSNGDFNAVKSILKR---QKMILAGLSSAEAESLYRVATELAA--NSEDMVSLLLR 182
           +  A   G +     + ++    K  +         ++               +   L+ 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLK------SNILYDVLRNNNDEARYKISMFLIN 63

Query: 183 AGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL-------DCRDKEGRT 235
            G  I+     +TK+G +        G   +I+    + +               K  + 
Sbjct: 64  KGADIK----SRTKEGTTLFFPLFQGGG-NDITGTTELCKI--FLEKGADITALYKPYKI 116

Query: 236 PLHLAVNKTSIGCAK-------VLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM 288
            +   +    +   +       +  +SG     K K G T+L           ++M+ + 
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 289 GADPTIKDD 297
                +K++
Sbjct: 177 IKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 9/100 (9%)

Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----- 225
             + ++  + L  G  I        K     +         +E   +   K   S     
Sbjct: 91  TGTTELCKIFLEKGADITA----LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ 146

Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKD 265
           L  +DK G T L            K++ +       K   
Sbjct: 147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  136 bits (345), Expect = 2e-39
 Identities = 63/145 (43%), Positives = 82/145 (56%), Gaps = 21/145 (14%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
           GRTPLHLA     +   K+LLE+GAD  AK K+G+T LH AA NG   +V++L+E GAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352
             KD  GR+   +A   GH+EV+++L                     L+ GA  N  D+ 
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLL---------------------LEAGADVNAKDKN 100

Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGA 377
           G TPLH+AA  GH  VV LL+E GA
Sbjct: 101 GRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  109 bits (275), Expect = 4e-29
 Identities = 52/122 (42%), Positives = 75/122 (61%), Gaps = 2/122 (1%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG 256
           +G + LH+AA  G  E +  L+       ++ +DK GRTPLHLA     +   K+LLE+G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 257 ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
           AD  AK K+G+T LH AA NG   +V++L+E GAD   KD  GR+   +A   GH+EV++
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

Query: 317 VL 318
           +L
Sbjct: 119 LL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  100 bits (253), Expect = 5e-26
 Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 16/128 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
           LAA     ++V LLL AG  +      K K+G + LH+AA  G  E +  L+        
Sbjct: 8   LAARNGHLEVVKLLLEAGADVN----AKDKNGRTPLHLAARNGHLEVVKLLL------EA 57

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
              ++ +DK GRTPLHLA     +   K+LLE+GAD  AK K+G+T LH AA NG   +V
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117

Query: 283 EMLIEMGA 290
           ++L+E GA
Sbjct: 118 KLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 92.8 bits (232), Expect = 5e-23
 Identities = 39/74 (52%), Positives = 47/74 (63%)

Query: 327 AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386
           AAR G LE ++ LL+ GA  N  D+ G TPLH+AA  GH  VV LL+E GADV  +D  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 387 HAPLHLAVEGGRVE 400
             PLHLA   G +E
Sbjct: 69  RTPLHLAARNGHLE 82

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  131 bits (332), Expect = 3e-37
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 21/150 (14%)

Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM 288
            +  G T LH+A  K  I   + LL++G+D   K   G T LH A  +G  ++VE+L++ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNY 348
            A       +  S    A   GH++++++L                     L  GAS N 
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLL---------------------LSYGASRNA 104

Query: 349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
            + +GL P+     +  K ++LL  +  + 
Sbjct: 105 VNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  130 bits (329), Expect = 8e-37
 Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 22/145 (15%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
           G D       G+T LH A+  GD   VE L++ G+DP +KD  G +    A + GH++V+
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
           E+L                     L   A  N       +PLH AA  GH  +V LL+ +
Sbjct: 60  ELL---------------------LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98

Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
           GA     +  G  P+    +     
Sbjct: 99  GASRNAVNIFGLRPVDYTDDESMKS 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  126 bits (319), Expect = 2e-35
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
               G + LH+A+  G    +  L+  +     + +D  G TPLH A N   +   ++LL
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLL--QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

Query: 254 ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE 313
           +  A     G    + LH+AA NG   +V++L+  GA     +  G    D   D+    
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS 123

Query: 314 VLEVLQRGEAVLTA 327
           +L + ++ E+   +
Sbjct: 124 LLLLPEKNESSSAS 137

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  135 bits (341), Expect = 3e-37
 Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 38/259 (14%)

Query: 160 ESLYRVATELAANSEDMVSL---LLRAGLSIEIDERVKTKDGWSELHVAAAF---GRTEE 213
           + L+ V +      E++  L   L      +      +   G + L  A      G    
Sbjct: 4   DRLFSVVSR--GVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 214 ISSLVRMKEY---------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK-- 262
           I  L+++ +                  +G + LH+A+ K S+ C K+L+E+GAD   +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 263 -----------GKDGKTSLHNAAANGDRRMVEMLIEMG---ADPTIKDDRGRSCFDVARD 308
                         G+  L  AA      +V  L+E     A     D  G +       
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 309 KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHV 368
                         A++     G L+    L          +  GLTPL +AA +G   +
Sbjct: 182 IADNS-----PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236

Query: 369 VLLLIEFGADVECQDNEGH 387
              +++         +  H
Sbjct: 237 FRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  134 bits (338), Expect = 8e-37
 Identities = 44/239 (18%), Positives = 73/239 (30%), Gaps = 49/239 (20%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYES------LDCRDKEGRTPLHLAVNKTSIGC---AKVL 252
           L    + G  EE++ L+    + S             G+T L  AV     G       L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 253 LESG-----------ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS 301
           L+             A    +   G ++LH A      + V++L+E GAD  ++      
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 302 CFDVARDKGHIEVLEVLQRGEAVL-TAARRGELEGLESLLDKG----------------- 343
                              GE  L  AA   + + +  LL+                   
Sbjct: 126 QKHQGTCFYF---------GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 344 --ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
                   +    + L I    G   +   L       E  +++G  PL LA + G++E
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE 235

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 87.9 bits (218), Expect = 6e-20
 Identities = 30/159 (18%), Positives = 46/159 (28%), Gaps = 34/159 (21%)

Query: 266 GKTSLHNAAANGDRRMVEMLIE--------MGADPTIKDDRGRSCFDVA---RDKGHIEV 314
            +  L +  + G    +  L+E        +      +   G++C   A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
           +  L      L   +              A        G + LHIA  K     V LL+E
Sbjct: 62  IMPL------LQIDKDSG----NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111

Query: 375 FGADVECQDNE-------------GHAPLHLAVEGGRVE 400
            GADV  +                G  PL LA    + +
Sbjct: 112 NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 87.2 bits (216), Expect = 9e-20
 Identities = 24/174 (13%), Positives = 44/174 (25%), Gaps = 29/174 (16%)

Query: 128 LRHAVSNGDFNAVKSILKR-----QKMILAGLSSAEAESLYRVATEL--AA--NSEDMVS 178
           L  A+       VK +++       +         +    Y     L  AA     D+V+
Sbjct: 94  LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

Query: 179 LLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLH 238
            LL                G + LH                          +    + L 
Sbjct: 154 YLLENP-HQPASLEATDSLGNTVLHALVMIAD-------------------NSPENSALV 193

Query: 239 LAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
           + +    +     L  +   +E     G T L  AA  G   +   +++     
Sbjct: 194 IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  136 bits (343), Expect = 6e-37
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 36/259 (13%)

Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
           L    ++M + L         +   +      +    +     +E++      +      
Sbjct: 71  LFPEIQEMPTSLNNDS----SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP 126

Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG----DRRMVEM 284
            D+ G TPLH   +  ++   K L++ G+++      G++ L  A  +           +
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 285 LIEMGADPTIKDDRGRSCF----DVARDKGHIEV--------LEVLQR------------ 320
           L  +     ++D   R+        +   G            +  + +            
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246

Query: 321 GEAVLTAARRGELEGLESLLDKGAST----NYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
            E+          + +   LD         N  D  G T L+IAA  G+  +V  L+++G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 377 ADVECQDNEGHAPLHLAVE 395
           AD    +  G  P+     
Sbjct: 307 ADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 79.7 bits (196), Expect = 9e-17
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 21/145 (14%)

Query: 254 ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE 313
               +   +    +  L        + M   L    ++   +             + H+ 
Sbjct: 51  SPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQ------QQQHVS 104

Query: 314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC-DQYGLTPLHIAAIKGHKHVVLLL 372
              +LQ              E  ++  +   + N   D++G TPLH      +  +V  L
Sbjct: 105 FDSLLQ--------------EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150

Query: 373 IEFGADVECQDNEGHAPLHLAVEGG 397
           ++ G++    DN G + L  AV+  
Sbjct: 151 VKHGSNRLYGDNMGESCLVKAVKSV 175

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  134 bits (338), Expect = 1e-36
 Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 44/258 (17%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKD---GWSELHVAAAF---GRTEEISSLVRMKEY-- 223
           N +++ SLL     S +     + KD   G + L  A      G+ + I+ L+ +     
Sbjct: 25  NCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84

Query: 224 -------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKD----------- 265
                   S      +G+T LH+A+ + ++    +L+E+GAD +A               
Sbjct: 85  SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPG 144

Query: 266 ---GKTSLHNAAANGDRRMVEMLIEMG---ADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
              G+  L  AA      +V+ L++     AD + +D  G +      +     V     
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK- 203

Query: 320 RGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379
                +T+     L     L          ++ GLTPL +AA  G   V+  +++     
Sbjct: 204 ----FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH- 258

Query: 380 ECQDNEGHAPLHLAVEGG 397
                      H A    
Sbjct: 259 ------EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  128 bits (324), Expect = 1e-34
 Identities = 49/239 (20%), Positives = 78/239 (32%), Gaps = 48/239 (20%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYES-----LDCRDKE-GRTPLHLAVNKTSIG---CAKVL 252
           +  A A    +E+ SL+   +         + +D E G+T L  A+     G      +L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 253 LESGADKEA-----------KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS 301
           L+     ++               G+T+LH A    +  +V +L+E GAD     +    
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 302 CFDVARDKGHIEVLEVLQRGEAVL-TAARRGELEGLESLLDKG---ASTNYCDQYGLTPL 357
                R   +         GE  L  AA   +L  ++ LL      A  +  D  G T L
Sbjct: 137 KKTKGRPGFY--------FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188

Query: 358 HIAAIKGHKHVVL----------------LLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           H         V                   L       E  + +G  PL LA   G++ 
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG 247

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  113 bits (284), Expect = 5e-29
 Identities = 48/285 (16%), Positives = 81/285 (28%), Gaps = 73/285 (25%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAES-------LYRVATELAANSEDMVSLL 180
           +  AV+  +   ++S+L   +     L+ +E +        L +    L     D ++LL
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 181 LRAGLSIEIDERV-------KTKDGWSELHVAAAFGRTEEISSLVR------------MK 221
           L      +  ++            G + LH+A        ++ LV               
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 222 EYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG---ADKEAKGKDGKTSLHNAAANGD 278
           +          G  PL LA     +   K LL++    AD  A+   G T LH      D
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

Query: 279 RRMVEM----------------LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
             +                   L        I + +G +   +A   G I VL  +    
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI---- 252

Query: 323 AVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKH 367
                            L +         +     H AA   H H
Sbjct: 253 -----------------LQREI-------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.9 bits (244), Expect = 2e-23
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 35/170 (20%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM-------GADPTIKD-DRGRSCFDVA- 306
            A ++      + S+ +A A  + + +E L+           D   KD + G++C   A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 307 --RDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKG 364
                G  + + +L             + + L+  +   AS       G T LHIA  + 
Sbjct: 63  LNLHNGQNDTIALL--------LDVARKTDSLKQFV--NASYTDSYYKGQTALHIAIERR 112

Query: 365 HKHVVLLLIEFGADVECQDNE--------------GHAPLHLAVEGGRVE 400
           +  +V LL+E GADV+   N               G  PL LA    ++ 
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  125 bits (316), Expect = 4e-35
 Identities = 36/140 (25%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 261 AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
             G         A  NGD   V+  +  G D     + GR     A D G +E+LE L  
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL-- 59

Query: 321 GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
                              L KGA  N  D++ +TPL  A  +GH   V LL+  GAD  
Sbjct: 60  -------------------LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100

Query: 381 CQDNEGHAPLHLAVEGGRVE 400
            +  +G              
Sbjct: 101 VKGPDGLTAFEATDNQAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  115 bits (290), Expect = 2e-31
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES 255
                E   A   G  +E+   V   + E ++   + GR PLH A +   +   + LL  
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYV--AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
           GAD  A  K   T L +A   G    V++L+  GAD T+K   G + F+   ++    +L
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

Query: 316 E 316
           +
Sbjct: 123 Q 123

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  128 bits (323), Expect = 1e-34
 Identities = 54/251 (21%), Positives = 86/251 (34%), Gaps = 49/251 (19%)

Query: 174 EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAA---AFGRTEEISSLVRMKEY------- 223
           E ++S LL     +  +E  +   G + L  A    + GR + I  L+ + E        
Sbjct: 22  EGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81

Query: 224 --ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK--------------DGK 267
                      G+T LH+A+ +      ++L+E GAD  A+ +               G+
Sbjct: 82  INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGE 141

Query: 268 TSLHNAAANGDRRMVEMLIEMG---ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
             L  AA      +V  L E G   AD   +D RG +            VL  L      
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNT------------VLHALVAIADN 189

Query: 325 LTAARRGELEGLESLLDKGASTN-------YCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
                +   +  + LL K A            +  GL+PL +AA  G   +   +I    
Sbjct: 190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249

Query: 378 -DVECQDNEGH 387
            D     +  H
Sbjct: 250 ADAAAHHHHHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  121 bits (305), Expect = 4e-32
 Identities = 46/251 (18%), Positives = 78/251 (31%), Gaps = 55/251 (21%)

Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEY---------ESLDCRDKEGRTPLHLAVNK 243
           +K  +    L    + G  + +  L+    +         +        G+T L  A+  
Sbjct: 1   MKVFNRPI-LFDIVSRGSPDGLEGLL---SFLLTHKKRLTDEEFREPSTGKTCLPKALLN 56

Query: 244 TSIG---CAKVLLESGADK-----------EAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
            S G      +LL+                      G+T+LH A     +  VE+L+E G
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL-TAARRGELEGLESLLDKG---AS 345
           AD   +               +         GE  L  AA   +   +  L + G   A 
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFY--------FGELPLSLAACTNQPHIVHYLTENGHKQAD 168

Query: 346 TNYCDQYGLTPLHIAAIKGHKH---------VVLLLIEFGADV-------ECQDNEGHAP 389
               D  G T LH                  +  LL+   A +          +N+G +P
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228

Query: 390 LHLAVEGGRVE 400
           L +A + G++ 
Sbjct: 229 LMMAAKTGKIG 239

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  122 bits (310), Expect = 2e-34
 Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
           G    +K  DG T LHNAA NG    V+ L+  GAD   +   G +   +A   GH E++
Sbjct: 1   GHMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
           ++L                     L KGA  N   + G TP H+A   GH  +V LL   
Sbjct: 59  KLL---------------------LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97

Query: 376 GADVECQDNEGHAPLH 391
           GADV  +        H
Sbjct: 98  GADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  100 bits (252), Expect = 5e-26
 Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LDCRDKEGRTPLHLAVNKTSIGC 248
             +KDG + LH AA  G  EE+  L+      S    ++ R K+G TPLHLA        
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLL------SKGADVNARSKDGNTPLHLAAKNGHAEI 57

Query: 249 AKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGR 300
            K+LL  GAD  A+ KDG T  H A  NG   +V++L   GAD   +     
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.0 bits (204), Expect = 2e-19
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 16/109 (14%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            AA     + V  LL  G  +      ++KDG + LH+AA  G  E +  L+      + 
Sbjct: 15  NAAKNGHAEEVKKLLSKGADVNA----RSKDGNTPLHLAAKNGHAEIVKLLL------AK 64

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLH 271
              ++ R K+G TP HLA         K+L   GAD  A+        H
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.9 bits (188), Expect = 4e-17
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           G       + G TPLH AA  GH   V  L+  GADV  +  +G+ PLHLA + G  E
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  121 bits (306), Expect = 2e-33
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 21/142 (14%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
               L  A         ++L+ +GAD  AK + G T L+ A A+G   +VE+L++ GAD 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352
              D  G +   +A   GH+E+ EVL                     L  GA  N  D++
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVL---------------------LKHGADVNAQDKF 112

Query: 353 GLTPLHIAAIKGHKHVVLLLIE 374
           G T   I+   G++ +  +L +
Sbjct: 113 GKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  120 bits (305), Expect = 2e-33
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 22/146 (15%)

Query: 256 GAD-KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV 314
           G+      G D    L  AA  G    V +L+  GAD   KD+ G +   +A   GH+E+
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
           +EVL                     L  GA  N  D  G TPLH+AA  GH  +  +L++
Sbjct: 63  VEVL---------------------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101

Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
            GADV  QD  G     +++  G  +
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNED 127

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  108 bits (273), Expect = 9e-29
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 10/126 (7%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYES----LDCRDKEGRTPLHLAVNKTSIGCAKVL 252
           D   +L  AA  G+ +E+  L+      +    ++ +D+ G TPL+LA     +   +VL
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM------ANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
           L++GAD  A    G T LH AA  G   + E+L++ GAD   +D  G++ FD++   G+ 
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 313 EVLEVL 318
           ++ E+L
Sbjct: 127 DLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.4 bits (231), Expect = 8e-23
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 16/125 (12%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES- 225
            AA    +D V +L+  G   +++   K + G + L++A A G  E +  L+        
Sbjct: 20  EAARAGQDDEVRILMANG--ADVNA--KDEYGLTPLYLATAHGHLEIVEVLL------KN 69

Query: 226 ---LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282
              ++  D  G TPLHLA     +  A+VLL+ GAD  A+ K GKT+   +  NG+  + 
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129

Query: 283 EMLIE 287
           E+L +
Sbjct: 130 EILQK 134

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  112 bits (281), Expect = 8e-28
 Identities = 33/262 (12%), Positives = 76/262 (29%), Gaps = 43/262 (16%)

Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
           D + LLL +   +++       + +    +AA  G    ++ L  +   E +     E  
Sbjct: 109 DTLCLLLTSDEIVKV----IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 164

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKEAK--GKDGKTSLHNAAA-NGDRRMVEMLIEMGAD 291
               LA     +     L E    +       +   +   AA   G   ++  L++    
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224

Query: 292 PTIKDD----------------------RGRSCFDVARDKGHIEVLEVLQRGE---AVLT 326
               +                            F ++   G  +++   +  +    +  
Sbjct: 225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 284

Query: 327 AARRGELEGLESL--------LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
             RR +   L+ +        +   A T          L +A   G++    LL+   + 
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344

Query: 379 VECQDNEGHAPLHLAVEGGRVE 400
           +           ++   GGR++
Sbjct: 345 LALTKANN---YYINETGGRLD 363

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (252), Expect = 7e-24
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 43/235 (18%)

Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
           +  + ++ + + L    ++E             L+ A      +++ S            
Sbjct: 42  MTLSYKEAIHIFLPGTKNME------QVRQLLCLYYAHYNRNAKQLWSD--------AHK 87

Query: 229 RDKEGRTPLHLAVNKTSIGCAKV---LLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           +  +      +A              LL S    +    +   +   AA NG   ++  L
Sbjct: 88  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147

Query: 286 IEMGADPTIKDDR--GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343
            E+     +   +      F +A + GH+ VL                       L +  
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR---------------------LCELA 186

Query: 344 ASTNYCD--QYGLTPLHIAAI-KGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
            +                AA+ +GH +V+  L++    +   +          V 
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 241

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 281 MVEMLIEMGADPTIKDDRGRSCFDVAR-DKGHIEVLEVLQRGEA-----VLTAARRGELE 334
            + + +    +  ++  R   C   A  ++   ++     +           AA  G   
Sbjct: 49  AIHIFLPGTKN--MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSS 106

Query: 335 GLE---SLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD--NEGHAP 389
            L+    LL                  +AA  GH HV+  L E            E +  
Sbjct: 107 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 166

Query: 390 LHLAVEGGRVE 400
             LA E G + 
Sbjct: 167 FRLAAENGHLH 177

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.5 bits (175), Expect = 7e-14
 Identities = 24/261 (9%), Positives = 51/261 (19%), Gaps = 81/261 (31%)

Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
            +++ L            +   + +    +AA  G    ++ L  +   E+      E  
Sbjct: 142 HVLNRLCELA--PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199

Query: 235 TPLHL-AVNKTSIGCAKVLLESGADKEA-------------------------------- 261
                 AV +        LL+                                       
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK 259

Query: 262 --------------KGKDGKTSLHNAAANGDRRMVEML--------IEMGADPTIKDDRG 299
                         +   G   L N     D  +++ +        I+  A         
Sbjct: 260 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 319

Query: 300 RSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI 359
                +A   G+     +L                     L   +             +I
Sbjct: 320 NELLRLALRLGNQGACALL---------------------LSIPSVLALTKA---NNYYI 355

Query: 360 AAIKGHKHVVLLLIEFGADVE 380
               G   +  + +E      
Sbjct: 356 NETGGRLDLRAVALEHHHHHH 376

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 98.2 bits (246), Expect = 2e-25
 Identities = 51/145 (35%), Positives = 64/145 (44%), Gaps = 54/145 (37%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
           GRTPLHLA     +   K+LLE+GAD  AK K+G+T LH AA NG               
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--------------- 46

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352
                             H+EV+++L                     L+ GA  N  D+ 
Sbjct: 47  ------------------HLEVVKLL---------------------LEAGADVNAKDKN 67

Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGA 377
           G TPLH+AA  GH  VV LL+E GA
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.3 bits (236), Expect = 4e-24
 Identities = 39/74 (52%), Positives = 47/74 (63%)

Query: 327 AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386
           AAR G LE ++ LL+ GA  N  D+ G TPLH+AA  GH  VV LL+E GADV  +D  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 387 HAPLHLAVEGGRVE 400
             PLHLA   G +E
Sbjct: 69  RTPLHLAARNGHLE 82

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 87.8 bits (219), Expect = 1e-21
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG 256
           +G + LH+AA  G  E +  L+  +    ++ +DK GRTPLHLA     +   K+LLE+G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 257 ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGA 290
           AD  AK K+G+T LH AA NG   +V++L+E GA
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 71.2 bits (176), Expect = 1e-15
 Identities = 27/48 (56%), Positives = 31/48 (64%)

Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           G TPLH+AA  GH  VV LL+E GADV  +D  G  PLHLA   G +E
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 49

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.0 bits (245), Expect = 3e-25
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGE 332
            +++        L+  G+               A   G  + + +L              
Sbjct: 1   GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRIL-------------- 43

Query: 333 LEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
                  +  GA     D+ G TPLH+AA  GH  VV LL+E GADV  QD  G     +
Sbjct: 44  -------MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96

Query: 393 AVEGGRVE 400
           +++ G  +
Sbjct: 97  SIDNGNED 104

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 97.6 bits (244), Expect = 5e-25
 Identities = 32/90 (35%), Positives = 51/90 (56%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
             +    L  A         ++L+ +GAD  AK K+G T LH AA NG   +V++L+E G
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
           AD   +D  G++ FD++ D G+ ++ E+LQ
Sbjct: 81  ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES----LD 227
           +     S L+  G  +         D   +L  AA  G+ +E+  L+      +    + 
Sbjct: 5   HHHHHSSGLVPRGSHMG-------SDLGKKLLEAARAGQDDEVRILM------ANGADVA 51

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
            +DK G TPLHLA     +   K+LLE+GAD  A+ K GKT+   +  NG+  + E+L
Sbjct: 52  AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 76.6 bits (188), Expect = 6e-16
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 190 DERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV---NKTSI 246
           D   K       +     FG  +  +  V + E   L    +   T LHLAV   ++TS+
Sbjct: 126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 185

Query: 247 GCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA 306
                L+++  + + +   G T+LH      +   +++L+   A   I ++ G +  D+A
Sbjct: 186 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245

Query: 307 RDKGHIEVLEVLQ 319
           +   H    E+L 
Sbjct: 246 KRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.5 bits (167), Expect = 4e-13
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 210 RTEEISSLVRMKEYESLDCRDKEGRTPLHL-AVNKTSIGCAKVLLESGADKEAKGK---- 264
           R + I++    + Y      D   +      AV    I         G D   K      
Sbjct: 106 RKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANG 165

Query: 265 --DGKTSLHNAAANGDRR---MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
               +T+LH A  + DR    +V+ L++   +   +  +G +         + E L++L 
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 320 RGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379
           RG                      AS    ++ G TPL IA    H+H   LL       
Sbjct: 226 RG---------------------KASIEIANESGETPLDIAKRLKHEHCEELL------T 258

Query: 380 ECQDNEGHAPLHLAVE 395
           +      ++ +H+  E
Sbjct: 259 QALSGRFNSHVHVEYE 274

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.4 bits (159), Expect = 4e-12
 Identities = 15/74 (20%), Positives = 28/74 (37%)

Query: 327 AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386
           +  R  L  ++ L+    + +     G T LH   +  +   + LL+   A +E  +  G
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 238

Query: 387 HAPLHLAVEGGRVE 400
             PL +A       
Sbjct: 239 ETPLDIAKRLKHEH 252

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.6 bits (157), Expect = 8e-12
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 176 MVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE-SLDCRDKEGR 234
           + +      L+ +I      +   + LH+A        +  +  + +   +LD +  +G 
Sbjct: 147 LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 206

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
           T LH      +  C K+LL   A  E   + G+T L  A         E+L +
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 2e-14
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 222 EYESLDCRDKEGRTPLHLAV---NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD 278
           +              LHLAV   N+ S+     ++++G   +AK  DG T+LH AA    
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238

Query: 279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
              +++L++  A     ++ G +  D+AR K H E  E+L+
Sbjct: 239 PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 33/194 (17%), Positives = 52/194 (26%), Gaps = 37/194 (19%)

Query: 212 EEISSLVRMK-EYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK------ 264
                 +  K        R       L  A+    +        +G D            
Sbjct: 129 GTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA 188

Query: 265 DGKTSLHNAAANGDRR---MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
             +  LH A    ++    +V+ +I+ G     K   G +    A      + L++L   
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL--- 245

Query: 322 EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
                             L   A     ++ G T L IA  K HK    LL       + 
Sbjct: 246 ------------------LKGRALVGTVNEAGETALDIARKKHHKECEELLE------QA 281

Query: 382 QDNEGHAPLHLAVE 395
           Q      PLH+   
Sbjct: 282 QAGTFAFPLHVDYS 295

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.9 bits (155), Expect = 1e-11
 Identities = 17/74 (22%), Positives = 30/74 (40%)

Query: 327 AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386
            A +  L  ++ ++  G   +     G T LH AA+      + LL++  A V   +  G
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 259

Query: 387 HAPLHLAVEGGRVE 400
              L +A +    E
Sbjct: 260 ETALDIARKKHHKE 273

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 1/110 (0%)

Query: 179 LLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEY-ESLDCRDKEGRTPL 237
                     +            LH+A        +  +  + +    LD +  +G T L
Sbjct: 171 FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230

Query: 238 HLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
           H A       C K+LL+  A      + G+T+L  A     +   E+L +
Sbjct: 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 72.1 bits (176), Expect = 4e-14
 Identities = 22/89 (24%), Positives = 43/89 (48%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
            ++  TPL  A    S+   + LL++GA+       G+  LH+A   G   +  + ++ G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
           AD   +D  GR    +A +  + +++ +L
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.6 bits (159), Expect = 7e-12
 Identities = 36/165 (21%), Positives = 50/165 (30%), Gaps = 23/165 (13%)

Query: 210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK--GKDGK 267
           R    S   + +           G      + +  S+      L  GAD      G+D  
Sbjct: 177 RPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNA 236

Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
           T L  A A       E L++ GA+    D  GR     A   GH  +  +          
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL---------- 286

Query: 328 ARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
                       L +GA     D  G  PL IA    +  +V LL
Sbjct: 287 -----------FLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 60.6 bits (146), Expect = 3e-10
 Identities = 28/75 (37%), Positives = 39/75 (52%)

Query: 323 AVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
            ++ A     L   E LL  GA+ N  D  G  PLH A I GH  +  L ++ GAD+  +
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297

Query: 383 DNEGHAPLHLAVEGG 397
           D+EG  PL +A+E  
Sbjct: 298 DSEGRDPLTIAMETA 312

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 29/137 (21%), Positives = 44/137 (32%), Gaps = 8/137 (5%)

Query: 124 GPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRA 183
           G  L R +        +   L     +       +  +    AT  AANS      LL+ 
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT--AANSLLACEFLLQN 257

Query: 184 GLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNK 243
           G     +       G   LH A   G T      ++      L  RD EGR PL +A+  
Sbjct: 258 G----ANVNQADSAGRGPLHHATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMET 311

Query: 244 TSIGCAKVLLESGADKE 260
            +     +L  +   + 
Sbjct: 312 ANADIVTLLRLAKMREA 328

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 2/116 (1%)

Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
           + +   + ++        +++     +D  + L  A A         L++     +++  
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA--NVNQA 264

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           D  GR PLH A      G A + L+ GAD  A+  +G+  L  A    +  +V +L
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 326 TAARRGELEGLESLLDKGASTNYC--DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
            +     L  +   L  GA  N+    Q   TPL  A           L++ GA+V   D
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265

Query: 384 NEGHAPLHLAVEGGRVE 400
           + G  PLH A   G   
Sbjct: 266 SAGRGPLHHATILGHTG 282

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 9   EQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQI 68
            Q+++ N   + K   ++++ +      + + ++T++  +  V+PP G++ P  +  + +
Sbjct: 14  SQKIVFNAPYDDKHTYHIKITNAGG-RRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAV 72

Query: 69  ILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVK 117
                +           DR  I+ T               PDG+ +  +
Sbjct: 73  SCDTFNAATEDLNN---DRITIEWTNT-------------PDGAAKQFR 105

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 63.6 bits (154), Expect = 2e-12
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 4   LLAVS-EQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLA 62
           LL +S  +E+      + + +  + L ++   + VAFKV+T++P K+ V P +    P  
Sbjct: 18  LLHISPAEELYFGSIESGEKKTLIVLTNVT-KNIVAFKVRTTAPEKYRVKPSNSSCDP-- 74

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVT-----LPDGSTQDVK 117
             ++ II+ P          S  DRFLI A     +       ++     +P     + +
Sbjct: 75  GASIDIIVSPH----GGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHR 130

Query: 118 FKIAFVGP 125
            +   V  
Sbjct: 131 LRCHTVES 138

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 218 VRMKEYESLDCRDKEGRTPLHLAV---NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAA 274
               +              LHLAV   N+ S+     ++++G   +AK  DG T+LH AA
Sbjct: 156 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA 215

Query: 275 ANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
                  +++L++  A     ++ G +  D+AR K H E  E+L++ +
Sbjct: 216 LYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 155 SSAEAESLYRVATELAANSEDMVSLLL----RAGLSIEIDERVKTKDGWSELHVAAAFGR 210
            + E + L+      A  + D++S+L            +            LH+A    +
Sbjct: 129 CTPEPQRLWT-----AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAV---K 180

Query: 211 TEEISSLVRMKEY-----ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKD 265
               +SL  + ++       LD +  +G T LH A       C K+LL+  A      + 
Sbjct: 181 VANQASLP-LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 239

Query: 266 GKTSLHNAAANGDRRMVEML 285
           G+T+L  A     +   E+L
Sbjct: 240 GETALDIARKKHHKECEELL 259

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 60.9 bits (147), Expect = 2e-11
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 2   ERLLAVS-EQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQP 60
           E++L +    ++            N++L +      V FKV+T++P ++ V P SG++ P
Sbjct: 12  EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPS-DRKVCFKVKTTAPRRYCVRPNSGIIDP 70

Query: 61  LAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVF-GSADSVNSLCVTLPDGSTQDVKFK 119
            +  T+ ++L+P    P    +    +F+++      +   + ++          D K +
Sbjct: 71  GSIVTVSVMLQPFDYDPNEKSK---HKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLR 127

Query: 120 IAFVGP 125
             F  P
Sbjct: 128 CVFEMP 133

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MERLLAVS-EQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQ 59
            E++L +    ++            N++L +      V FKV+T++P ++ V P SG++ 
Sbjct: 7   HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPS-DRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 60  PLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVF-GSADSVNSLCVTLPDGSTQDVKF 118
           P +  T+ ++L+P    P    +    +F+++      +   + ++          D K 
Sbjct: 66  PGSIVTVSVMLQPFDYDPNEKSK---HKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKL 122

Query: 119 KIAF 122
           +  F
Sbjct: 123 RCVF 126

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 34 TSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKAT 93
           S +AFKV++S+   + V P  G V    ++ L I   P             D+ +I+  
Sbjct: 36 DSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPGPP--------KEDKIVIQYA 87

Query: 94 VF 95
            
Sbjct: 88 EV 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 43/309 (13%), Positives = 95/309 (30%), Gaps = 85/309 (27%)

Query: 110 DGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATEL 169
           D  T + +++   +        V N D   V+ + K        LS  E + +      +
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI------LSKEEIDHIIMSKDAV 61

Query: 170 AANSEDMVSLLLRAGLSIE---IDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           +  +  +   LL     +    ++E ++    +    + +   +TE+    +  + Y   
Sbjct: 62  SG-TLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPI-KTEQRQPSMMTRMYIE- 114

Query: 227 DCRDKEGR-----TPLHLAVNKTSIGCAKVLLESGADKEAK-------GKDGKTSLHNAA 274
             RD+           +++  +  +   + LLE    + AK          GKT +    
Sbjct: 115 -QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWVALDV 170

Query: 275 ANGDRRMVEMLIEMGADPTIKDDRGRSCF--DVARDKGHIEVLEVLQRGEAVLTAARRGE 332
                              ++       F  ++        VLE+LQ+            
Sbjct: 171 CL--------------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK------------ 204

Query: 333 LEGLESLLDKGASTNYCDQYGLTPLHIAAIKG----------HKHVVLLL--------IE 374
              L   +D    T+  D      L I +I+           +++ +L+L          
Sbjct: 205 ---LLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 375 -FGADVECQ 382
            F  ++ C+
Sbjct: 261 AF--NLSCK 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 54/409 (13%), Positives = 111/409 (27%), Gaps = 150/409 (36%)

Query: 7   VSEQEVLINFTLNSKCRANVRLISLCATS---PVAFKVQTSSP-HKFLVNPPSGLVQPLA 62
           V   +    F L   C+    L+    T+    V   +  ++  H  L +    L     
Sbjct: 253 VQNAKAWNAFNL--SCKI---LL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPD-- 301

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAF 122
                ++LK     P   PR                     +  T P         +++ 
Sbjct: 302 -EVKSLLLKYLDCRPQDLPRE--------------------VLTTNP--------RRLSI 332

Query: 123 VGPFLLRHAVSNGDF------NAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDM 176
           +    +R  ++  D       + + +I++     L  L  AE   ++     L+      
Sbjct: 333 IAE-SIRDGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFD---RLS------ 379

Query: 177 VSLLLRAGLSIEID--ERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
              +      I       +     W ++       +++ +  + ++ +Y  ++ + KE  
Sbjct: 380 ---VFPPSAHIPTILLSLI-----WFDVI------KSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGK-DGKTSLHNAAANGDRRMVEML-IEMGADP 292
             +             + LE       K K + + +LH       R +V+   I    D 
Sbjct: 426 ISIPS-----------IYLEL------KVKLENEYALH-------RSIVDHYNIPKTFDS 461

Query: 293 TIKDDRGRSCFD------VARDKGHIEVLEVLQRGEAVLTAARRGELEGL--ESLLD--- 341
              DD      D      +     H             L      E   L     LD   
Sbjct: 462 ---DDLIPPYLDQYFYSHIGH---H-------------LKNIEHPERMTLFRMVFLDFRF 502

Query: 342 -----KGASTNYCDQYGLTPL---------HIAAIKGHKH-VVLLLIEF 375
                +  ST +     +            +I         +V  +++F
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 34 TSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKAT 93
             + FK+++S+ +++ + P  G V P     + I     +           D+ ++   
Sbjct: 28 AEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGAP--------KEDKLVVHFA 79

Query: 94 VF 95
            
Sbjct: 80 SA 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	418
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.55
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.55
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.52
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.38
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.32
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.24
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	94.39
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	92.78
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	90.46
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	88.79
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	81.73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.6e-51  Score=390.41  Aligned_cols=312  Identities=25%  Similarity=0.359  Sum_probs=240.1

Q ss_pred             hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601           86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV  165 (418)
Q Consensus        86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~  165 (418)
                      ...|..|+..|+.+.++.++....+     ++ ..+..|.||||+|+..|+.++|++|+++|++++  .....+.+++++
T Consensus        48 ~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~t~L~~  119 (437)
T 1n11_A           48 ETPLHMAARAGHTEVAKYLLQNKAK-----VN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPN--LATTAGHTPLHI  119 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCC-----SS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTCCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC-----CC-CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC--CCCCCCCcHHHH
Confidence            4556777777777777766654321     11 123456777777777777777777777766552  234556677777


Q ss_pred             HHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCC
Q 048601          166 ATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS  245 (418)
Q Consensus       166 a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~  245 (418)
                      |+.  .|+.+++++|++.+++.+.    .+..|.||||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+
T Consensus       120 A~~--~g~~~~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~  191 (437)
T 1n11_A          120 AAR--EGHVETVLALLEKEASQAC----MTKKGFTPLHVAAKYGKVRVAELLLERDA--HPNAAGKNGLTPLHVAVHHNN  191 (437)
T ss_dssp             HHH--HTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCSSCCCHHHHHHHTTC
T ss_pred             HHH--cCCHHHHHHHHhCCCCCcC----CCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCHHHHHHHcCC
Confidence            777  6777777777777766655    66677777777777777777777776554  566777778888888888888


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC----
Q 048601          246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG----  321 (418)
Q Consensus       246 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~----  321 (418)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|.+.    
T Consensus       192 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  271 (437)
T 1n11_A          192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG  271 (437)
T ss_dssp             HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC
Confidence            8888888888888877777888888888888888888888888888888888888888888888888888888643    


Q ss_pred             --------chHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601          322 --------EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA  393 (418)
Q Consensus       322 --------~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  393 (418)
                              ++++.|+..|+.+++++|+++|++++.++..|+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|
T Consensus       272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A  351 (437)
T 1n11_A          272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA  351 (437)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence                    368888888888888888888888888888889999999999999999999999999888888899999999


Q ss_pred             HhcCCcceeehhhhccCCcccc
Q 048601          394 VEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       394 ~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      ++.|+.++|++|+  +.|++++
T Consensus       352 ~~~g~~~iv~~Ll--~~ga~~~  371 (437)
T 1n11_A          352 AQQGHTDIVTLLL--KNGASPN  371 (437)
T ss_dssp             HHTTCHHHHHHHH--HTTCCSC
T ss_pred             HHCChHHHHHHHH--HCcCCCC
Confidence            9999999999888  4566654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.7e-51  Score=388.48  Aligned_cols=314  Identities=28%  Similarity=0.378  Sum_probs=287.8

Q ss_pred             chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHH
Q 048601           85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYR  164 (418)
Q Consensus        85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~  164 (418)
                      ..+.|..|+..|+.+.++.++....+     .+ ..+..|.||||+|+..|+.++|++|++++++++.  ....+.++|+
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~   85 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQRGAS-----PN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA--KAKDDQTPLH   85 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC-----SC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC--CCTTSCCHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCC-----CC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCHHH
Confidence            35679999999999999999876332     11 2345689999999999999999999999987633  4567899999


Q ss_pred             HHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC
Q 048601          165 VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT  244 (418)
Q Consensus       165 ~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~  244 (418)
                      +|+.  .|+.+++++|+++|++++.    .+..|.||||+|+..|+.+++++|++.+.  ..+..+..|.||||+|+..|
T Consensus        86 ~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~g  157 (437)
T 1n11_A           86 CAAR--IGHTNMVKLLLENNANPNL----ATTAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKKGFTPLHVAAKYG  157 (437)
T ss_dssp             HHHH--HTCHHHHHHHHHHTCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTT
T ss_pred             HHHH--CCCHHHHHHHHhCCCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHhCCC--CCcCCCCCCCCHHHHHHHcC
Confidence            9999  8999999999999999988    88999999999999999999999998765  56778889999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC---
Q 048601          245 SIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG---  321 (418)
Q Consensus       245 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~---  321 (418)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|.+.   
T Consensus       158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  237 (437)
T 1n11_A          158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  237 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999753   


Q ss_pred             ---------chHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHH
Q 048601          322 ---------EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL  392 (418)
Q Consensus       322 ---------~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~  392 (418)
                               ++++.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus       238 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  317 (437)
T 1n11_A          238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV  317 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHH
Confidence                     46999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcceeehhhhccCCccccc
Q 048601          393 AVEGGRVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       393 A~~~g~~~~v~~Ll~~~~g~~~~~  416 (418)
                      |+..|+.++|++|+  +.|++++.
T Consensus       318 A~~~g~~~~v~~Ll--~~gad~n~  339 (437)
T 1n11_A          318 ASHYGNIKLVKFLL--QHQADVNA  339 (437)
T ss_dssp             HHHSSCSHHHHHHH--HTTCCTTC
T ss_pred             HHHcCcHHHHHHHH--hcCCCCCC
Confidence            99999999999999  45666653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-47  Score=342.05  Aligned_cols=266  Identities=26%  Similarity=0.289  Sum_probs=242.4

Q ss_pred             ccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchH
Q 048601          122 FVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSE  201 (418)
Q Consensus       122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~  201 (418)
                      ..|.|+|+.|+..|++++|++|++++++++.. ....+.++|++|+.  .|+.+++++|+++|++++.    .+..|.||
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~   75 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQ--MSREDIVELLLRHGADPVL----RKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTCCCH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCcc----cCCCCCCH
Confidence            35899999999999999999999999876432 35678899999999  8999999999999999887    88999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCccHHH
Q 048601          202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK----------GKDGKTSLH  271 (418)
Q Consensus       202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~  271 (418)
                      ||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++|+++|++++..          +..|.||||
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCC--CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence            999999999999999998765  77889999999999999999999999999999999887          778999999


Q ss_pred             HHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCC
Q 048601          272 NAAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCD  350 (418)
Q Consensus       272 ~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~  350 (418)
                      +|+..|+.+++++|++. |++++..+..|.||||.|+..++.+.+                 .+++++|+++|++++.++
T Consensus       154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----------------~~i~~~Ll~~g~~~~~~~  216 (285)
T 1wdy_A          154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-----------------EAITHLLLDHGADVNVRG  216 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH-----------------HHHHHHHHHTTCCSSCCC
T ss_pred             HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH-----------------HHHHHHHHHcCCCCCCcC
Confidence            99999999999999998 999999999999999999988872211                 345566999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          351 QYGLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       351 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      ..|.||||+|+..|+.+++++|++ .|++++.+|..|+|||++|++.|+.+++++|+  +.|++++
T Consensus       217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll--~~Ga~~~  280 (285)
T 1wdy_A          217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC--KRGASTD  280 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH--HHSSCSC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHH--HcCCCCC
Confidence            999999999999999999999999 89999999999999999999999999999999  5566554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.7e-46  Score=344.11  Aligned_cols=280  Identities=24%  Similarity=0.273  Sum_probs=236.4

Q ss_pred             ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601          120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW  199 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  199 (418)
                      ....|.|+|+.||++|++++|++|+++|++++.. +...+.||||+|+.  .|+.++|++|+++|++++.    .+..+.
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~--~g~~~iv~~Ll~~ga~~~~----~~~~~~   93 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQ--MSREDIVELLLRHGADPVL----RKKNGA   93 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTCC
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcCHHHHHHH--cCCHHHHHHHHHcCCchhh----hccCCC
Confidence            3455788999999999999999999988877432 33457889999988  8899999999999998887    888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCccH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK----------GKDGKTS  269 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~g~t~  269 (418)
                      ++++.++..+...++..++....  +++..|..|.||||+|+..|+.+++++|+++|++++..          +..|.||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A           94 TPFILAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  171 (337)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred             chhHHHHhcccchhhHHhhhccc--hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence            99999999999988888886554  67888888999999999999999999999998887653          3457899


Q ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHhc------------CchHHHHHHcCC
Q 048601          270 LHNAAANGDRRMVEMLIE-MGADPTIKDDRGRSCFDVARDKGH----IEVLEVLQR------------GEAVLTAARRGE  332 (418)
Q Consensus       270 L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~l~~------------~~~~~~a~~~g~  332 (418)
                      ||+|+..|+.++|++|++ .|++++.++..|.|+++.++..+.    .+++++|++            .++++.|+..|+
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence            999999999999999985 588999988899999888776543    356777754            346888999999


Q ss_pred             HHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCC
Q 048601          333 LEGLESLLDK-GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG  411 (418)
Q Consensus       333 ~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g  411 (418)
                      .+++++|++. |+++|.+|..|+||||+|+.+|+.++|++|+++|++++.+     +||++|+++|+.++|++|+  ++|
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll--~~G  324 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLL--SHG  324 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHH--HTT
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHH--HCc
Confidence            9999999985 8999999999999999999999999999999999999765     5999999999999999999  667


Q ss_pred             cccc
Q 048601          412 TMVS  415 (418)
Q Consensus       412 ~~~~  415 (418)
                      ++++
T Consensus       325 A~~d  328 (337)
T 4g8k_A          325 AKED  328 (337)
T ss_dssp             CCC-
T ss_pred             CCCC
Confidence            7765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=324.80  Aligned_cols=260  Identities=22%  Similarity=0.238  Sum_probs=206.3

Q ss_pred             cccchHHHHHHHHCCCHHHHHHHHhcchhh---------hhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccc
Q 048601          121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMI---------LAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDE  191 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~---------~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~  191 (418)
                      ...|.|+||+|+..|+.+.++.++..++..         .....+..+.|+|++|+.  .|+.+++++|++.|++++.  
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~--   87 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAI--HGHQLSLRNLISQGWAVNI--   87 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHH--TTCHHHHHHHHHTTCCSCE--
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC--
Confidence            356899999999999988888766543220         012245678899999999  8999999999999999988  


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHH
Q 048601          192 RVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLH  271 (418)
Q Consensus       192 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~  271 (418)
                        .+..|.||||+|+..|+.+++++|++.+.  +++.++..|.||||+|+..|+.+++++|+++|++++..+ .|.||||
T Consensus        88 --~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~  162 (285)
T 3d9h_A           88 --ITADHVSPLHEACLGGHLSCVKILLKHGA--QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIH  162 (285)
T ss_dssp             --ECTTCCCHHHHHHHTTCHHHHHHHHHTTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHH
T ss_pred             --cCCCCCCHHHHHHHCCcHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHH
Confidence              89999999999999999999999998754  788899999999999999999999999999999988654 5999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 048601          272 NAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ  351 (418)
Q Consensus       272 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~  351 (418)
                      +|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++. +.
T Consensus       163 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~-~~  220 (285)
T 3d9h_A          163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK---------------------LLESGADVNQ-GK  220 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTC-CB
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH---------------------HHHCCCCCCC-CC
Confidence            9999999999999999999999999999999999998887776665                     8899999995 88


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccc
Q 048601          352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV  414 (418)
Q Consensus       352 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~  414 (418)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+  ++.+++++|++.. |+++
T Consensus       221 ~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~-~a~l  280 (285)
T 3d9h_A          221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLERE-GASL  280 (285)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh-ccCC
Confidence            8999999999999999999999999999999999999999999  4578999999542 4443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-43  Score=316.17  Aligned_cols=263  Identities=26%  Similarity=0.349  Sum_probs=238.1

Q ss_pred             hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601           86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV  165 (418)
Q Consensus        86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~  165 (418)
                      ...|..|+..|+.+.++.++....+     +....+..|.||||+|+..|+.+++++|+++|+++..  .+..+.+++++
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~   78 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHH
Confidence            5678999999999999999876442     2333456789999999999999999999999987633  45678999999


Q ss_pred             HHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccC----------CCCCCc
Q 048601          166 ATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR----------DKEGRT  235 (418)
Q Consensus       166 a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~t  235 (418)
                      |+.  .|+.+++++|+++|++++.    .+..|.||||+|+..|+.+++++|++.+.  +++..          +..|.|
T Consensus        79 A~~--~~~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~~~~~~~~~~~~~~g~t  150 (285)
T 1wdy_A           79 AAI--AGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGA--NVNLRRKTKEDQERLRKGGAT  150 (285)
T ss_dssp             HHH--HTCHHHHHHHHHTTCCTTC----BCTTCCBHHHHHHHTTCHHHHHHHHHTTC--CTTCCCCCCHHHHHTTCCCCC
T ss_pred             HHH--cCCHHHHHHHHHcCCCCCc----cCcccCCHHHHHHHhCCHHHHHHHHHhCC--CcccccccHHHHHhhccCCCc
Confidence            999  8999999999999999987    89999999999999999999999998766  44444          778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 048601          236 PLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGD----RRMVEMLIEMGADPTIKDDRGRSCFDVARDKG  310 (418)
Q Consensus       236 ~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  310 (418)
                      |||+|+..|+.+++++|++. |++++..+..|.||||+|+..++    .+++++|+++|++++.++..|.||||+|+..|
T Consensus       151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  230 (285)
T 1wdy_A          151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK  230 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            99999999999999999998 99999999999999999999999    99999999999999999999999999999888


Q ss_pred             CHHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Q 048601          311 HIEVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN  384 (418)
Q Consensus       311 ~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  384 (418)
                      +.+++++                     |++ .|++++.++..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       231 ~~~~v~~---------------------Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          231 HLGLVQR---------------------LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CHHHHHH---------------------HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CHHHHHH---------------------HHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            8777766                     777 8999999999999999999999999999999999999998874

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-45  Score=342.80  Aligned_cols=258  Identities=21%  Similarity=0.258  Sum_probs=220.7

Q ss_pred             ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHH--------HcCCCCcccc
Q 048601          120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLL--------RAGLSIEIDE  191 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll--------~~g~~~~~~~  191 (418)
                      .+..|.|+||.|+..|. +++++|+....+   ..+...+.|+||+|+.  .|+.+++++|+        +.|++++.  
T Consensus        90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~~~~n---~~d~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~ll~~ga~vn~--  161 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGSY-AITEPITRESVN---IIDPRHNRTVLHWIAS--NSSAEKSEDLIVHEAKECIAAGADVNA--  161 (373)
T ss_dssp             ----CCCHHHHHHHSSS-CCCSCCSTTTTT---TCCCSSCCCHHHHHHC--TTCCSCCTTHHHHHHHHHHHTCCCTTC--
T ss_pred             CCCCCccHHHHHhcCCc-hHHHHhcccccc---ccCCcCCCCHHHHHHH--CCCHHHHHHHHHHHHHHHHhcCCCCcC--
Confidence            34568999999999554 778877653221   1223578899999998  88888877776        78998887  


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCcc
Q 048601          192 RVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG---ADKEAKGKDGKT  268 (418)
Q Consensus       192 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~g~t  268 (418)
                        .|..|.||||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++|++++   ++++..+..|.|
T Consensus       162 --~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t  237 (373)
T 2fo1_E          162 --MDCDENTPLMLAVLARRRRLVAYLMKAGA--DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  237 (373)
T ss_dssp             --CCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             --CCCCCCCHHHHHHHcChHHHHHHHHHCCC--CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence              88899999999999999999999998765  67888899999999999999999999999987   789999999999


Q ss_pred             HHHHHHHcC---CHHHHHHHHHcCCCCCc--------cCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHH
Q 048601          269 SLHNAAANG---DRRMVEMLIEMGADPTI--------KDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLE  337 (418)
Q Consensus       269 ~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~  337 (418)
                      |||+|+..|   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++                    
T Consensus       238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~--------------------  297 (373)
T 2fo1_E          238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY--------------------  297 (373)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH--------------------
T ss_pred             HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH--------------------
Confidence            999999988   89999999999998875        56688999999888887777666                    


Q ss_pred             HHHhCC-CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          338 SLLDKG-ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       338 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                       |++++ ++++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.|||++|+.+|+.++|++|++++.
T Consensus       298 -Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          298 -LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             -HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             -HHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence             67664 9999999999999999999999999999999999999999999999999999999999999995543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.2e-42  Score=320.47  Aligned_cols=284  Identities=21%  Similarity=0.223  Sum_probs=182.9

Q ss_pred             HHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHH
Q 048601           87 RFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVA  166 (418)
Q Consensus        87 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a  166 (418)
                      ..|..|+..|+.+.+.+++...+..    +. ..+..|.||||+|+..|+.++|++|+++|++++.  .+..+.+||++|
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~----~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A   98 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVN----CH-ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTT----CC-CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCC----cc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCcHHHHH
Confidence            4455666666666666555443221    11 1223455666666666666666666665554422  234555666666


Q ss_pred             HHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHH------
Q 048601          167 TELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLA------  240 (418)
Q Consensus       167 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A------  240 (418)
                      +.  .|+.+++++|+++|++++.    .+..|.||||+|+..|+.+++++|++.+.  +++..+..|.+|+++|      
T Consensus        99 ~~--~g~~~iv~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~~~l~~a~~~~~~  170 (351)
T 3utm_A           99 CS--YGHYEVTELLLKHGACVNA----MDLWQFTPLHEAASKNRVEVCSLLLSHGA--DPTLVNCHGKSAVDMAPTPELR  170 (351)
T ss_dssp             HH--TTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHCSSHHHH
T ss_pred             HH--CCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCccccCCCCcchHHHhhhhhH
Confidence            65  5666666666666665555    55556666666666666666666665443  4455555555554443      


Q ss_pred             ---------------HHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCH
Q 048601          241 ---------------VNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSC  302 (418)
Q Consensus       241 ---------------~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~  302 (418)
                                     +..+..+.++.++..+......+..|.||||+|+..   +..+++++|++.|++++.++..|.||
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  250 (351)
T 3utm_A          171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP  250 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             HHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCH
Confidence                           334444444444444443334455666677777666   44666777777777776666667777


Q ss_pred             HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC
Q 048601          303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ  382 (418)
Q Consensus       303 l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  382 (418)
                      ||+|+..|+.+                     ++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+
T Consensus       251 L~~A~~~g~~~---------------------~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~  309 (351)
T 3utm_A          251 LHVAAERAHND---------------------VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII  309 (351)
T ss_dssp             HHHHHHTTCHH---------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHcCCHH---------------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Confidence            66666655555                     455589999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          383 DNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       383 d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                      |..|+||+++|    +.+++++|.+...
T Consensus       310 ~~~g~tal~~a----~~~~~~~l~~~~~  333 (351)
T 3utm_A          310 SLQGFTAAQMG----NEAVQQILSESTP  333 (351)
T ss_dssp             CTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred             CCCCCChhhhh----hHHHHHHHHhccc
Confidence            99999999998    5678888875543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.2e-43  Score=310.16  Aligned_cols=240  Identities=27%  Similarity=0.331  Sum_probs=181.6

Q ss_pred             cccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601          121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS  200 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t  200 (418)
                      +..|.||||+|+..|+.-.+      +                ..+..  .++.+++++|++.|++++.   ..+..|.|
T Consensus         7 d~~g~tpL~~A~~~g~~~~~------~----------------~~~~~--~~~~~~v~~Ll~~g~~~~~---~~d~~g~t   59 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLET------G----------------NSEEE--EDAPAVISDFIYQGASLHN---QTDRTGET   59 (253)
T ss_dssp             ------------------------------------------------------------------------CCCTTSCC
T ss_pred             CCCCCcHHHHHHhccccccc------c----------------chhhc--CCChHHHHHHHHccCCccc---ccCCCCCc
Confidence            45799999999998853110      0                01223  6799999999999998754   14788999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCccHHHHHHHcCCH
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      |||+|+..|+.+++++|++.+.  +++.++..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..|+.
T Consensus        60 ~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  137 (253)
T 1yyh_A           60 ALHLAARYSRSDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE  137 (253)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH
Confidence            9999999999999999998765  778899999999999999999999999999987 8999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601          280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI  359 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  359 (418)
                      +++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|.||||+
T Consensus       138 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~tpL~~  196 (253)
T 1yyh_A          138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV---------------------LLKNGANKDMQNNREETPLFL  196 (253)
T ss_dssp             SHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHHH
Confidence            99999999999999999999999999988877776655                     899999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          360 AAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       360 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                      |+..|+.+++++|+++|++++.+|..|+||+++|+++|+.+++++|...++
T Consensus       197 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             HHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999985544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.2e-44  Score=333.90  Aligned_cols=258  Identities=16%  Similarity=0.148  Sum_probs=229.6

Q ss_pred             ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601          120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW  199 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  199 (418)
                      .+..|.||||+|+..|+.++|++|+++|++++  ..+..+.++|++|+.  .|+.+++++|+++|++++      +..|.
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~------~~~g~   85 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPT--IQNRFGCTALHLACK--FGCVDTAKYLASVGEVHS------LWHGQ   85 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHH--HCCHHHHHHHHHHCCCCC------CBTTB
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCcc------ccCCC
Confidence            45679999999999999999999999998763  356688999999999  899999999999999553      35789


Q ss_pred             hHHHHHHHcCCHHHHHHHHhccc--CCCCcc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCC
Q 048601          200 SELHVAAAFGRTEEISSLVRMKE--YESLDC-----------------RDKEGRTPLHLAVNKT--SIGCAKVLLESGAD  258 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~-----------------~~~~~~t~L~~A~~~~--~~~~v~~Ll~~~~~  258 (418)
                      ||||+|+..|+.+++++|++...  +..++.                 .+..|.||||+|+..|  +.+++++|+++|++
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~  165 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS  165 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            99999999999999999998721  113333                 7788999999999999  99999999999999


Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCH
Q 048601          259 KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD-----PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGEL  333 (418)
Q Consensus       259 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~  333 (418)
                      ++..+..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++                
T Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~----------------  229 (364)
T 3ljn_A          166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR----------------  229 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHH----------------
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHH----------------
Confidence            999999999999999999999999999999999     99999999999999998887776665                


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc------------CCCCCCcHhHHHHhcCCcce
Q 048601          334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC------------QDNEGHAPLHLAVEGGRVEP  401 (418)
Q Consensus       334 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------------~d~~g~t~l~~A~~~g~~~~  401 (418)
                           |+++|++++.+|..|.||||+|+..|+.++|++|+++|++++.            .+..+++|++.|+..|+.+.
T Consensus       230 -----Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~  304 (364)
T 3ljn_A          230 -----FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE  304 (364)
T ss_dssp             -----HHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHH
T ss_pred             -----HHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHH
Confidence                 8999999999999999999999999999999999999877532            46678999999999998888


Q ss_pred             eehhhhc
Q 048601          402 LLFIWLK  408 (418)
Q Consensus       402 v~~Ll~~  408 (418)
                      +..|++.
T Consensus       305 v~~ll~~  311 (364)
T 3ljn_A          305 VLQLLQE  311 (364)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777744

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.2e-41  Score=313.97  Aligned_cols=280  Identities=24%  Similarity=0.288  Sum_probs=243.2

Q ss_pred             chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHH
Q 048601           85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYR  164 (418)
Q Consensus        85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~  164 (418)
                      .+..|+.|+..|+.+.|+.|++.-.     +++......|.||||+|+..|+.++|++|+++|+++..  ....+.++++
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Ga-----dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~--~~~~~~~~~~   97 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGATPFI   97 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCC-----CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh--hccCCCchhH
Confidence            3677999999999999999987532     23334455699999999999999999999999988743  4567788888


Q ss_pred             HHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCC--------CccCCCCCCcH
Q 048601          165 VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES--------LDCRDKEGRTP  236 (418)
Q Consensus       165 ~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~--------~~~~~~~~~t~  236 (418)
                      .+..  .+..+++..+++.+++++.    .+..|.||||+|+..|+.+++++|++.+...+        ....+..|.||
T Consensus        98 ~~~~--~~~~~~~~~~~~~~~~~~~----~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A           98 LAAI--AGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  171 (337)
T ss_dssp             HHHH--HTCHHHHHHHHTTTCCTTC----BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred             HHHh--cccchhhHHhhhccchhhh----hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence            8888  7999999999999999988    99999999999999999999999998765322        12345678999


Q ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCccHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601          237 LHLAVNKTSIGCAKVLLE-SGADKEAKGKDGKTSLHNAAANGD----RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH  311 (418)
Q Consensus       237 L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  311 (418)
                      ||+|+..|+.+++++|++ .|++++.++..|.|+|++++..++    .+++++|+++|++++.++..|+||||+|+..|+
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence            999999999999999996 599999999999999998876543    468999999999999999999999999999999


Q ss_pred             HHHHHHHhc-------------CchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          312 IEVLEVLQR-------------GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       312 ~~~~~~l~~-------------~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      .+++++|..             .++++.|++.|+.+++++|+++|+++|.     .+|||+|+.+|+.++|++|+++||+
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAK  326 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            999999964             2479999999999999999999999985     4699999999999999999999999


Q ss_pred             CCcC
Q 048601          379 VECQ  382 (418)
Q Consensus       379 ~~~~  382 (418)
                      +|..
T Consensus       327 ~d~~  330 (337)
T 4g8k_A          327 EDFH  330 (337)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            9864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.2e-42  Score=316.27  Aligned_cols=264  Identities=25%  Similarity=0.303  Sum_probs=224.0

Q ss_pred             ccchHHHHHHHHCCCHHHHHHHHhc-chhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601          122 FVGPFLLRHAVSNGDFNAVKSILKR-QKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS  200 (418)
Q Consensus       122 ~~g~~~L~~A~~~g~~~~vk~Ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t  200 (418)
                      ..+.++|+.|+..|+.+.|++|+.. +.++  ...+..+.|+||+|+.  .|+.+++++|+++|++++.    .+..|.|
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t   93 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNC--HASDGRKSTPLHLAAG--YNRVRIVQLLLQHGADVHA----KDKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTC--CCSSTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTCCC
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCc--ccCCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCCCc----cCCCCCc
Confidence            4578899999999999999999875 3332  3345678899999999  8999999999999999887    8889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH-------
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA-------  273 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-------  273 (418)
                      |||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|       
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~  171 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKHGA--CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE  171 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHH
Confidence            9999999999999999998765  7788899999999999999999999999999999999999999987765       


Q ss_pred             --------------HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHH
Q 048601          274 --------------AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESL  339 (418)
Q Consensus       274 --------------~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~L  339 (418)
                                    +..++.+.++.++..+......+..|.||||.|+..++.                  +..+++++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~------------------~~~~~~~~L  233 (351)
T 3utm_A          172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP------------------KRKQVAELL  233 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCST------------------THHHHHHHH
T ss_pred             HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCc------------------cHHHHHHHH
Confidence                          445566666666665544445566677777777766432                  234567779


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       340 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      +++|++++.++..|+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|++.|+.++|++|+  +.|++++
T Consensus       234 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll--~~gad~~  307 (351)
T 3utm_A          234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL--SYGSDPS  307 (351)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH--HTTCCTT
T ss_pred             HHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH--HcCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999  5566655

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.7e-42  Score=299.46  Aligned_cols=224  Identities=28%  Similarity=0.394  Sum_probs=202.7

Q ss_pred             CChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCC
Q 048601          154 LSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEG  233 (418)
Q Consensus       154 ~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  233 (418)
                      ..+..+.+++++|+.  .|+.+++++|+++|++++.    .+..|.||||+|+..|+.+++++|++.+.  +++..+..|
T Consensus         6 ~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g   77 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAE--AGHVDICHMLVQAGANIDT----CSEDQRTPLMEAAENNHLEAVKYLIKAGA--LVDPKDAEG   77 (237)
T ss_dssp             CSSCCSCCHHHHHHH--HTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHTTTC--CCCCCCTTS
T ss_pred             cccCCCCCHHHHHHH--cCcHHHHHHHHHcCCCcCc----cCCCCCCHHHHHHHhCCHHHHHHHHhCCC--CCCCCCCCC
Confidence            345667888888888  7888888888888888877    88889999999999999999999997665  677889999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601          234 RTPLHLAVNKTSIGCAKVLLESG-ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI  312 (418)
Q Consensus       234 ~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  312 (418)
                      .||||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999998 89999999999999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHH
Q 048601          313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL  392 (418)
Q Consensus       313 ~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~  392 (418)
                      +++++                     |+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++
T Consensus       158 ~~~~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~  216 (237)
T 3b7b_A          158 DIAEI---------------------LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC  216 (237)
T ss_dssp             HHHHH---------------------HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            66555                     889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcceeehhh
Q 048601          393 AVEGGRVEPLLFIW  406 (418)
Q Consensus       393 A~~~g~~~~v~~Ll  406 (418)
                      |+.+|+.+.+..|+
T Consensus       217 A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          217 ASLNSQVWSALQMS  230 (237)
T ss_dssp             SCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987666554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.7e-42  Score=300.66  Aligned_cols=221  Identities=28%  Similarity=0.334  Sum_probs=188.2

Q ss_pred             hhhhHHHHHHHhhCCHHHHHHHHH----cCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCC
Q 048601          159 AESLYRVATELAANSEDMVSLLLR----AGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR  234 (418)
Q Consensus       159 ~~~~l~~a~~~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  234 (418)
                      +.++||+|+.  .|+.+++++|++    .|.+++.    .+..|.||||+|+..|+.+++++|++.+.  +++..+..|.
T Consensus         9 g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~   80 (241)
T 1k1a_A            9 GDTPLHIAVV--QGNLPAVHRLVNLFQQGGRELDI----YNNLRQTPLHLAVITTLPSVVRLLVTAGA--SPMALDRHGQ   80 (241)
T ss_dssp             TCCHHHHHHH--TTCHHHHHHHHHHHHHTTCCSCC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSC
T ss_pred             CCcHHHHHHH--cCCHHHHHHHHHHHHhcCCCCCc----ccccCCCHHHHHHHcCCHHHHHHHHHcCC--CccccCCCCC
Confidence            3344444444  344444444433    6777776    88889999999999999999999998665  6778889999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHc
Q 048601          235 TPLHLAVNKTSIGCAKVLLESGA----DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVARDK  309 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~  309 (418)
                      ||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence            99999999999999999999987    888889999999999999999999999999999999888 7899999999888


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      |+.+++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus       161 ~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  219 (241)
T 1k1a_A          161 NSLSMVQL---------------------LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP  219 (241)
T ss_dssp             TCHHHHHH---------------------HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             CCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            77776665                     889999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcCCcceeehhhhc
Q 048601          390 LHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       390 l~~A~~~g~~~~v~~Ll~~  408 (418)
                      |++|++.|+.++++.|+..
T Consensus       220 l~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          220 LMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TTTCSSHHHHHHHTC----
T ss_pred             HHHHHhcCcHHHHhhhccC
Confidence            9999999999999999854

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.4e-42  Score=301.50  Aligned_cols=219  Identities=25%  Similarity=0.298  Sum_probs=181.5

Q ss_pred             HHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcC
Q 048601          130 HAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFG  209 (418)
Q Consensus       130 ~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g  209 (418)
                      .+...++.+++++|+++++++... .+..+.|+|++|+.  .|+.+++++|+++|++++.    .+..|.||||+|+..|
T Consensus        29 ~~~~~~~~~~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~  101 (253)
T 1yyh_A           29 SEEEEDAPAVISDFIYQGASLHNQ-TDRTGETALHLAAR--YSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSAD  101 (253)
T ss_dssp             -----------------------C-CCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHHT
T ss_pred             hhhcCCChHHHHHHHHccCCcccc-cCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCC----CCCCCCCHHHHHHHcC
Confidence            377899999999999999887443 35678999999999  8999999999999999988    8999999999999999


Q ss_pred             CHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcC
Q 048601          210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG  289 (418)
Q Consensus       210 ~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  289 (418)
                      +.+++++|++.+. .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus       102 ~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  180 (253)
T 1yyh_A          102 AQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG  180 (253)
T ss_dssp             CHHHHHHHHHSTT-SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCC-CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999998664 467888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHH
Q 048601          290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV  369 (418)
Q Consensus       290 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  369 (418)
                      ++++.++..|.||||+|+..|+.+++++                     |+++|++++.+|..|.|||++|+.+|+.+++
T Consensus       181 a~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~  239 (253)
T 1yyh_A          181 ANKDMQNNREETPLFLAAREGSYETAKV---------------------LLDHFANRDITDHMDRLPRDIAQERMHHDIV  239 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHH---------------------HHHcCCCccccccCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999998887776665                     8999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 048601          370 LLLIEFGA  377 (418)
Q Consensus       370 ~~Ll~~ga  377 (418)
                      ++|.+...
T Consensus       240 ~~l~~~~~  247 (253)
T 1yyh_A          240 RLLDLEHH  247 (253)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHhh
Confidence            99987654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.3e-42  Score=320.32  Aligned_cols=223  Identities=30%  Similarity=0.405  Sum_probs=208.3

Q ss_pred             ChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCC
Q 048601          155 SSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR  234 (418)
Q Consensus       155 ~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  234 (418)
                      .+..+.++|++|+.  .|+.++|++|++.|++++.    .+..|.||||+|+..|+.+++++|++.+.    +..+..|.
T Consensus        16 ~d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~   85 (364)
T 3ljn_A           16 SDDENMEKIHVAAR--KGQTDEVRRLIETGVSPTI----QNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQ   85 (364)
T ss_dssp             CCHHHHHHHHHHHH--HTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTB
T ss_pred             cCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCccc----cCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCC
Confidence            45789999999999  8999999999999999988    89999999999999999999999998776    33446899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCccHHHHHHHcC--CHHHHHHHHHcCCC
Q 048601          235 TPLHLAVNKTSIGCAKVLLES----GADKEA-----------------KGKDGKTSLHNAAANG--DRRMVEMLIEMGAD  291 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~  291 (418)
                      ||||+|+..|+.+++++|++.    |++++.                 .+..|.||||+|+..|  +.+++++|+++|++
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~  165 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS  165 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            999999999999999999998    887776                 7889999999999999  99999999999999


Q ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC-----CCcCCCCCCcHHHHHHHcCCH
Q 048601          292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS-----TNYCDQYGLTPLHIAAIKGHK  366 (418)
Q Consensus       292 ~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~~  366 (418)
                      ++..+..|.||||+|+..|+.+++++                     |+++|++     ++..+..|+||||+|+..|+.
T Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~---------------------Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~  224 (364)
T 3ljn_A          166 PTAKDKADETPLMRAMEFRNREALDL---------------------MMDTVPSKSSLRLDYANKQGNSHLHWAILINWE  224 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHH---------------------HHhcccccccccccccCCCCCcHHHHHHHcCCH
Confidence            99999999999999998887776665                     8888888     999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          367 HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       367 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      ++|++|+++|++++.+|..|+|||++|++.|+.++|++|++.
T Consensus       225 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence            999999999999999999999999999999999999999965

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-41  Score=296.60  Aligned_cols=192  Identities=30%  Similarity=0.403  Sum_probs=159.2

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      .+..|.||||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  113 (231)
T 3aji_A           36 TDQDSRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA  113 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHhCC--CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            56778888888888888888888887654  6677788888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601          274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG  353 (418)
Q Consensus       274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g  353 (418)
                      +..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++                     |+++|++++.++..|
T Consensus       114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g  172 (231)
T 3aji_A          114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI---------------------LLFYKASTNIQDTEG  172 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHTTCCSCCCCTTS
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH---------------------HHhcCCCccccCCCC
Confidence            88888888888888888888888888888888877766665554                     778888888888888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       354 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||+++|+++++.+++++|...
T Consensus       173 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            8888888888888888888888888888888888888888888888888888743

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.7e-42  Score=306.39  Aligned_cols=253  Identities=21%  Similarity=0.216  Sum_probs=190.9

Q ss_pred             ecccchHHHHHHHHCCCHHHHHHHHhcchhhh-hcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCC
Q 048601          120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMIL-AGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDG  198 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  198 (418)
                      .+..|.||||+|+..|+.++|++|+++++... .......+.||||+|+.  .|+.+++++|+++|++++.    .+..|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~g   78 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI--LGEASTVEKLYAAGAGVLV----AERGG   78 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHH--HTCHHHHHHHHHTTCCSSC----CCTTS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCCCC----CCCCC
Confidence            34579999999999999999999999887632 23455688999999999  8999999999999999988    89999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccCCCC-----------ccCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCC
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEYESL-----------DCRDKEGRTPLHLAVNKTS-IGCAKVLLESGADKEAKGKDG  266 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----------~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~g  266 (418)
                      .||||+|+..|+.+++++|++.+.....           ......+.++++.++..+. ......+...+++++..+..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            9999999999999999999987653211           1122345666776665544 344455556788899999999


Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601          267 KTSLHNAAANGDRRMVEMLIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS  345 (418)
Q Consensus       267 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~  345 (418)
                      .||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++                     |+++|++
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~gad  217 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL---------------------LLKAGAD  217 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHH---------------------HHHcCCC
Confidence            99999999999999999999999999998854 9999999998887776665                     8999999


Q ss_pred             CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCc
Q 048601          346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV  399 (418)
Q Consensus       346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~  399 (418)
                      ++.++..|+||||+|+.+|+.+++++|+++|++++.+|..|.||+++|......
T Consensus       218 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred             CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence            999999999999999999999999999999999999999999999999876543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=305.04  Aligned_cols=262  Identities=20%  Similarity=0.199  Sum_probs=204.2

Q ss_pred             chHHHHHHhccCCccccccccccCCCCCc-----cceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhh
Q 048601           85 SDRFLIKATVFGSADSVNSLCVTLPDGST-----QDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEA  159 (418)
Q Consensus        85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~  159 (418)
                      ....+..|+..|+.+.+.+++...+....     ..-....+..|.||||+|+..|+.++|++|++++.+++.  .+..+
T Consensus        15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~~~~g   92 (285)
T 3d9h_A           15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI--ITADH   92 (285)
T ss_dssp             ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCE--ECTTC
T ss_pred             HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCC
Confidence            47789999999998888886544332110     111234567799999999999999999999999877633  45678


Q ss_pred             hhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHH
Q 048601          160 ESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL  239 (418)
Q Consensus       160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~  239 (418)
                      .|+|++|+.  .|+.+++++|+++|++++.    .+..|.||||+|+..|+.+++++|++.+.  +++. +..|.||||+
T Consensus        93 ~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~-~~~g~t~L~~  163 (285)
T 3d9h_A           93 VSPLHEACL--GGHLSCVKILLKHGAQVNG----VTADWHTPLFNACVSGSWDCVNLLLQHGA--SVQP-ESDLASPIHE  163 (285)
T ss_dssp             CCHHHHHHH--TTCHHHHHHHHHTTCCSSC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSSC-SCTTSCHHHH
T ss_pred             CCHHHHHHH--CCcHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCHHHHHHHHHHCCC--CCCC-CCCCCCHHHH
Confidence            999999999  8999999999999999988    89999999999999999999999998765  4443 3459999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHh
Q 048601          240 AVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ  319 (418)
Q Consensus       240 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  319 (418)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++  
T Consensus       164 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~--  240 (285)
T 3d9h_A          164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACL--  240 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHH--
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHH--
Confidence            9999999999999999999999999999999999999999999999999999995 8899999999998887776665  


Q ss_pred             cCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCc
Q 048601          320 RGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF-GADVEC  381 (418)
Q Consensus       320 ~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~  381 (418)
                                         |+++|++++.+|..|+||||+|+  ++.+++++|+++ |+++..
T Consensus       241 -------------------Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          241 -------------------LMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             -------------------HHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             -------------------HHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence                               89999999999999999999999  567999999998 777653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.1e-41  Score=292.67  Aligned_cols=227  Identities=27%  Similarity=0.398  Sum_probs=210.7

Q ss_pred             cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601          123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL  202 (418)
Q Consensus       123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L  202 (418)
                      .+.++|+.|+..|+++.+++|++.++.... ..+..+.+++++|+.  .|+.+++++|++.|++++.    .+..|.|||
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L   77 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLAT-RTDQDSRTALHWACS--AGHTEIVEFLLQLGVPVND----KDDAGWSPL   77 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGG-CCCTTSCCHHHHHHH--HTCHHHHHHHHHTTCCSCC----CCTTSCCHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhh-cCCCCCCCHHHHHHH--cCcHHHHHHHHHhCCCCCC----cCCCCCCHH
Confidence            467899999999999999999998766533 345688999999999  8999999999999999887    899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHH
Q 048601          203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV  282 (418)
Q Consensus       203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  282 (418)
                      |+|+..|+.+++++|++.+.  +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  155 (231)
T 3aji_A           78 HIAASAGXDEIVKALLVKGA--HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV  155 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999999999999998765  7788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q 048601          283 EMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAI  362 (418)
Q Consensus       283 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  362 (418)
                      ++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|.|||++|+.
T Consensus       156 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF---------------------LVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             HHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHH---------------------HHHCCCCCCCCCCCCCCHHHHHHh
Confidence            99999999999999999999999998887776665                     899999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCC
Q 048601          363 KGHKHVVLLLIEFGADV  379 (418)
Q Consensus       363 ~g~~~~v~~Ll~~ga~~  379 (418)
                      .++.+++++|.++|+++
T Consensus       215 ~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          215 GLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHccccccC
Confidence            99999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.4e-41  Score=291.03  Aligned_cols=190  Identities=30%  Similarity=0.415  Sum_probs=166.2

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCccHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC-RDKEGRTPLHLAVNKTSIGCAKVLLESG--ADKEAKGKDGKTSL  270 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L  270 (418)
                      .+..|.||||+|+..|+.+++++|++.+...+++. .+..|.||||+|+..|+.+++++|+++|  ++++..+..|.|||
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L  111 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  111 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHH
Confidence            56778888888888888888888888775455555 7888999999999999999999999988  88888889999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC-CCCCcC
Q 048601          271 HNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG-ASTNYC  349 (418)
Q Consensus       271 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g-~~~~~~  349 (418)
                      |+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++| ++++.+
T Consensus       112 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~  170 (228)
T 2dzn_A          112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL---------------------LCGLGKSAVNWQ  170 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHTTTCCCSCCC
T ss_pred             HHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH---------------------HHhcCcccccCc
Confidence            99999999999999999999999999999999999888877776655                     78888 899999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          350 DQYGLTPLHIAAIKGHKHVVLLLI-EFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       350 ~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                      |..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|++.   +++++|++
T Consensus       171 d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            999999999999999999999999 88999999999999999999764   56677764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=301.62  Aligned_cols=224  Identities=25%  Similarity=0.347  Sum_probs=134.9

Q ss_pred             eecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCC
Q 048601          119 KIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDG  198 (418)
Q Consensus       119 ~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  198 (418)
                      +.+..+.++|+.||..|++++|++|++.++.......                             ..++.    .+..+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~-----------------------------~~~~~----~~~~~   52 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE-----------------------------DTVSA----ADPEF   52 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc-----------------------------ccccc----cCccC
Confidence            4566788999999999999999999988765321100                             00111    44556


Q ss_pred             chHHHHHHHcCCHH-HHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601          199 WSELHVAAAFGRTE-EISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG  277 (418)
Q Consensus       199 ~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g  277 (418)
                      .|||+.|+..++.+ ++++|++.+.  +++.+|.+|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..+
T Consensus        53 ~t~L~~a~~~~~~~~~v~~Ll~~Ga--dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~  130 (269)
T 4b93_B           53 CHPLCQCPKCAPAQKRLAKVPASGL--GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG  130 (269)
T ss_dssp             ----------------------CCC--CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccC
Confidence            67777776665543 5566665443  56666777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q 048601          278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL  357 (418)
Q Consensus       278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L  357 (418)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++                     |+++|+++|.++..|+|||
T Consensus       131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~---------------------Ll~~gadvn~~~~~g~t~L  189 (269)
T 4b93_B          131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL---------------------LLQHGASINASNNKGNTAL  189 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHH---------------------HHHTTCCTTCBCTTSCBHH
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH---------------------HHHCCCCCCccccCCCcHH
Confidence            7777777777777777777777777776666555554443                     6667777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCC
Q 048601          358 HIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR  398 (418)
Q Consensus       358 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~  398 (418)
                      |+|+.+|+.++|++|+++|+|++.+|..|+|||++|+++|+
T Consensus       190 h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          190 HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            77777777777777777777777777777777777766664

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.3e-41  Score=290.94  Aligned_cols=215  Identities=27%  Similarity=0.376  Sum_probs=186.5

Q ss_pred             CCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 048601          172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKV  251 (418)
Q Consensus       172 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~  251 (418)
                      |+.+++++|++.|++++.   ..+..|.||||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++
T Consensus         2 g~~~~i~~Ll~~g~~~~~---~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~   76 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHN---QTDRTGETALHLAARYSRSDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQI   76 (223)
T ss_dssp             ---CCEETTEETTCCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHcCCCccc---ccCCCCCchHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            678888899999988765   137789999999999999999999997754  677888899999999999999999999


Q ss_pred             HHHcCC-CCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHc
Q 048601          252 LLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR  330 (418)
Q Consensus       252 Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~  330 (418)
                      |++++. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++             
T Consensus        77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------  143 (223)
T 2f8y_A           77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV-------------  143 (223)
T ss_dssp             HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH-------------
T ss_pred             HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH-------------
Confidence            999887 888888999999999999999999999999999999999999999999888777666655             


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          331 GELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       331 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                              |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.|+.+++++|+  ++
T Consensus       144 --------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~--~~  213 (223)
T 2f8y_A          144 --------LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD--EY  213 (223)
T ss_dssp             --------HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH--HT
T ss_pred             --------HHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHH--Hc
Confidence                    88889999999999999999999999999999999999999999999999999999999999999999  45


Q ss_pred             Cccc
Q 048601          411 GTMV  414 (418)
Q Consensus       411 g~~~  414 (418)
                      |+..
T Consensus       214 g~~~  217 (223)
T 2f8y_A          214 NLVR  217 (223)
T ss_dssp             TCSS
T ss_pred             CCCc
Confidence            5443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-41  Score=313.40  Aligned_cols=258  Identities=21%  Similarity=0.254  Sum_probs=221.7

Q ss_pred             chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHH--------hcchhhhhcCCh
Q 048601           85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSIL--------KRQKMILAGLSS  156 (418)
Q Consensus        85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll--------~~~~~~~~~~~~  156 (418)
                      ....|..|+..+ .+.+..++..       +++......|.||||+|+..|+.+++++|+        +.|++++  ..+
T Consensus        94 g~t~L~~Aa~~~-~~~~~~L~~~-------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn--~~d  163 (373)
T 2fo1_E           94 SPIKLHTEAAGS-YAITEPITRE-------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMD  163 (373)
T ss_dssp             CCCHHHHHHHSS-SCCCSCCSTT-------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCC
T ss_pred             CccHHHHHhcCC-chHHHHhccc-------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc--CCC
Confidence            456688888744 4555555432       223344457999999999999999888887        6677663  345


Q ss_pred             hhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhccc-CCCCccCCCCCCc
Q 048601          157 AEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKE-YESLDCRDKEGRT  235 (418)
Q Consensus       157 ~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~t  235 (418)
                      ..+.|+|++|+.  .|+.+++++|+++|++++.    .+..|.||||+|+..|+.+++++|++.+. ..+++..+..|.|
T Consensus       164 ~~g~TpL~~A~~--~g~~~iv~~Ll~~ga~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t  237 (373)
T 2fo1_E          164 CDENTPLMLAVL--ARRRRLVAYLMKAGADPTI----YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  237 (373)
T ss_dssp             TTSCCHHHHHHH--HTCHHHHHHHHHTTCCSCC----CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             CCCCCHHHHHHH--cChHHHHHHHHHCCCCCcc----cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence            688999999999  8999999999999999988    89999999999999999999999998652 1367888999999


Q ss_pred             HHHHHHHcC---CHHHHHHHHHcCCCCCC--------CCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHH
Q 048601          236 PLHLAVNKT---SIGCAKVLLESGADKEA--------KGKDGKTSLHNAAANGDRRMVEMLIEMG-ADPTIKDDRGRSCF  303 (418)
Q Consensus       236 ~L~~A~~~~---~~~~v~~Ll~~~~~~~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l  303 (418)
                      |||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.++|++|+++| ++++.+|..|.|||
T Consensus       238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence            999999998   89999999999999886        5678999999999999999999999886 99999999999999


Q ss_pred             HHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601          304 DVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV  379 (418)
Q Consensus       304 ~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  379 (418)
                      |+|+..|+.+++++                     |+++|++++.+|..|.||||+|+.+|+.++|++|+++|++.
T Consensus       318 ~~A~~~g~~~iv~~---------------------Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          318 MLAAQEGRIEVVMY---------------------LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHTCHHHHHH---------------------HHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHHcCCHHHHHH---------------------HHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99988887776665                     89999999999999999999999999999999999999864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.2e-41  Score=294.05  Aligned_cols=229  Identities=24%  Similarity=0.316  Sum_probs=203.3

Q ss_pred             ecccchHHHHHHHHCCCHHHHHHHHh----cchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccC
Q 048601          120 IAFVGPFLLRHAVSNGDFNAVKSILK----RQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKT  195 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~----~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~  195 (418)
                      .+..|.||||+|+..|+.++|++|++    .+.++  ...+..+.+++++|+.  .|+.+++++|++.|++++.    .+
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~----~~   76 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVI--TTLPSVVRLLVTAGASPMA----LD   76 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcccccCCCHHHHHHH--cCCHHHHHHHHHcCCCccc----cC
Confidence            45679999999999999999999997    44443  3345678999999999  8999999999999999987    89


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcccC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHH
Q 048601          196 KDGWSELHVAAAFGRTEEISSLVRMKEY--ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHN  272 (418)
Q Consensus       196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~  272 (418)
                      ..|.||||+|+..|+.+++++|++.+..  .+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus        77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  156 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence            9999999999999999999999987652  2567788999999999999999999999999999999998 889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601          273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY  352 (418)
Q Consensus       273 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~  352 (418)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.+|..
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~  215 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT---------------------LVRSGADSSLKNCH  215 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHhcCCCCCCcCCC
Confidence            999999999999999999999999999999999988877776665                     89999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCC
Q 048601          353 GLTPLHIAAIKGHKHVVLLLIEFGA  377 (418)
Q Consensus       353 g~t~L~~A~~~g~~~~v~~Ll~~ga  377 (418)
                      |.||||+|+..|+.++++.|.++++
T Consensus       216 g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          216 NDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             SCCTTTTCSSHHHHHHHTC------
T ss_pred             CCCHHHHHHhcCcHHHHhhhccCCC
Confidence            9999999999999999999998875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=301.38  Aligned_cols=232  Identities=23%  Similarity=0.326  Sum_probs=170.0

Q ss_pred             hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601           86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV  165 (418)
Q Consensus        86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~  165 (418)
                      ...|+.|+..|+.+.|+.++.........                         ....+        ......+.++++.
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-------------------------~~~~~--------~~~~~~~~t~L~~   58 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLED-------------------------AEDTV--------SAADPEFCHPLCQ   58 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------------
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCccccc-------------------------ccccc--------cccCccCCCHHHH
Confidence            46799999999999999998664421000                         00000        1122345566776


Q ss_pred             HHHHhhCC-HHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC
Q 048601          166 ATELAANS-EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT  244 (418)
Q Consensus       166 a~~~~~~~-~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~  244 (418)
                      |+.  .+. .+++++|++.|++++.    .+.+|.||||+|+..|+.+++++|++.+.  +++..+..|.||+++|+..+
T Consensus        59 a~~--~~~~~~~v~~Ll~~Gadvn~----~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a--~~~~~~~~g~t~l~~a~~~~  130 (269)
T 4b93_B           59 CPK--CAPAQKRLAKVPASGLGVNV----TSQDGSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAVPLHLACQQG  130 (269)
T ss_dssp             ------------------CCCCTTC----CCTTSCCHHHHHHHTTCTTHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHT
T ss_pred             HHH--hCCHHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCcHHHHHHHHhcCC--CcCccCCCCCCccccccccC
Confidence            665  333 4578899999999988    89999999999999999999999998765  77888999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchH
Q 048601          245 SIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV  324 (418)
Q Consensus       245 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  324 (418)
                      +.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++       
T Consensus       131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~-------  203 (269)
T 4b93_B          131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL-------  203 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH-------
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHH-------
Confidence            9999999999999999999999999999999999999999999999999999999999999998887776665       


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCC
Q 048601          325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGH-KHVVLLLIEFGADV  379 (418)
Q Consensus       325 ~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~  379 (418)
                                    |+++|++++.+|..|+||||+|+++|+ .+++++|.+.++.+
T Consensus       204 --------------Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          204 --------------LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             --------------HHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             --------------HHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence                          899999999999999999999998886 45566666666554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.4e-40  Score=287.33  Aligned_cols=224  Identities=22%  Similarity=0.321  Sum_probs=206.1

Q ss_pred             cccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601          121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS  200 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t  200 (418)
                      +..|.||||+|+..|+.+++++|+++|.++..  ....+.+++++|+.  .|+.+++++|+++|++++.    .+..|.|
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~----~~~~g~t   79 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAE--NNHLEAVKYLIKAGALVDP----KDAEGST   79 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHH--TTCHHHHHHHHTTTCCCCC----CCTTSCC
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCc--cCCCCCCHHHHHHH--hCCHHHHHHHHhCCCCCCC----CCCCCCc
Confidence            45689999999999999999999999887633  45678999999999  8999999999999999887    8899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR  280 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  280 (418)
                      |||+|+..|+.+++++|++.+. .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  158 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQ-MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD  158 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTC-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH
Confidence            9999999999999999998763 467888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 048601          281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA  360 (418)
Q Consensus       281 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  360 (418)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.+|..|.||||+|
T Consensus       159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~gad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL---------------------FLSRDSDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHTTTCCTTCCCTTSCCHHHHS
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH---------------------HHHcCCCCCccCCCCCCHHHHH
Confidence            9999999999999999999999999998887776665                     8999999999999999999999


Q ss_pred             HHcCCHHHHHHHHH
Q 048601          361 AIKGHKHVVLLLIE  374 (418)
Q Consensus       361 ~~~g~~~~v~~Ll~  374 (418)
                      +.+|+...+..|++
T Consensus       218 ~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          218 SLNSQVWSALQMSK  231 (237)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999876666654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.1e-40  Score=286.25  Aligned_cols=229  Identities=25%  Similarity=0.268  Sum_probs=200.0

Q ss_pred             hhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCc
Q 048601          156 SAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRT  235 (418)
Q Consensus       156 ~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t  235 (418)
                      +..+.++++.|+.  .|+.+++++|++.|++++.    .+..|.||||+|+..|+.+++++|++.+.. .....+..|.|
T Consensus         6 d~~~~~~l~~A~~--~g~~~~~~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t   78 (240)
T 3eu9_A            6 DDYSTWDIVKATQ--YGIYERCRELVEAGYDVRQ----PDKENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGDLNST   78 (240)
T ss_dssp             SCGGGCCHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTTBC
T ss_pred             ccccchHHHHHHH--cCChHHHHHHHHcCCCcCC----CCCCCCCHHHHHHHhCCHHHHHHHHHcCCc-chhhcCCcCCC
Confidence            3456778888888  7888888888888888877    888899999999999999999999987652 22344556899


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 048601          236 PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL  315 (418)
Q Consensus       236 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  315 (418)
                      |||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++    
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~----  154 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH----  154 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC----
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986554    


Q ss_pred             HHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHH
Q 048601          316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV  394 (418)
Q Consensus       316 ~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  394 (418)
                                      ..+++++|++.|++++..+. .|.||||+|+.+|+.+++++|+++|++++.+|..|+|||++|+
T Consensus       155 ----------------~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  218 (240)
T 3eu9_A          155 ----------------SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK  218 (240)
T ss_dssp             ----------------SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred             ----------------hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence                            13445558999999999887 8999999999999999999999999999999999999999999


Q ss_pred             hcCCcceeehhhhccCC
Q 048601          395 EGGRVEPLLFIWLKQWG  411 (418)
Q Consensus       395 ~~g~~~~v~~Ll~~~~g  411 (418)
                      +.|+.+++++|++....
T Consensus       219 ~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          219 QRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HTTCHHHHHHHHHHC--
T ss_pred             HcCcHHHHHHHHHhhhc
Confidence            99999999999965543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-40  Score=297.62  Aligned_cols=250  Identities=24%  Similarity=0.292  Sum_probs=196.1

Q ss_pred             HHHHCCCHHHHHHHHhcchhhhhc-------CChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601          130 HAVSNGDFNAVKSILKRQKMILAG-------LSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL  202 (418)
Q Consensus       130 ~A~~~g~~~~vk~Ll~~~~~~~~~-------~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L  202 (418)
                      .++..|+.+.++.++.....+...       .....+.++++.|+.  .|+.+++++|++.|++++.    .+..|.|||
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L   77 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACS--SGDTEEVLRLLERGADINY----ANVDGLTAL   77 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHH--HTCHHHHHHHHHHCCCTTC----BCTTCCBHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHH--cCCHHHHHHHHHcCCCCcc----cCCCCCCHH
Confidence            366677777777777654432211       112356788888888  7888888888888888877    788888888


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHH
Q 048601          203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV  282 (418)
Q Consensus       203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  282 (418)
                      |+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus        78 ~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  155 (299)
T 1s70_B           78 HQACIDDNVDMVKFLVENGA--NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL  155 (299)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHH
Confidence            88888888888888887654  6777888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHc-CCCCC--------------------------ccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHH
Q 048601          283 EMLIEM-GADPT--------------------------IKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG  335 (418)
Q Consensus       283 ~~Ll~~-g~~~~--------------------------~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~  335 (418)
                      ++++.. |.+++                          ..+..|.||||+|+..|+.++                     
T Consensus       156 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---------------------  214 (299)
T 1s70_B          156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV---------------------  214 (299)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH---------------------
T ss_pred             HHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH---------------------
Confidence            877643 33332                          244567777777766665555                     


Q ss_pred             HHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601          336 LESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       336 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~  409 (418)
                      +++|+++|++++.+|..|.||||+|+.+|+.++|++|+++|++++.+|..|.|||++|++. ..+.++.|+..+
T Consensus       215 v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~  287 (299)
T 1s70_B          215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQ  287 (299)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHHH
Confidence            4558999999999999999999999999999999999999999999999999999999763 445555555433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.8e-39  Score=279.24  Aligned_cols=217  Identities=26%  Similarity=0.321  Sum_probs=195.7

Q ss_pred             CCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHH
Q 048601          135 GDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEI  214 (418)
Q Consensus       135 g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v  214 (418)
                      |+.+++++|+++++++... .+..+.+++++|+.  .|+.+++++|+++|++++.    .+..|.||||+|+..|+.+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~-~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQ-TDRTGETALHLAAR--YSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETTCCTTCC-CTTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcCCCcccc-cCCCCCchHHHHHH--cCCHHHHHHHHHcCCCCCC----cCCCCCCHHHHHHHcCCHHHH
Confidence            6778888888888776432 34678899999998  8999999999999998887    889999999999999999999


Q ss_pred             HHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 048601          215 SSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTI  294 (418)
Q Consensus       215 ~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  294 (418)
                      ++|++.+. ..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        75 ~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           75 QILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HHHHHBTT-SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHcCC-CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99998664 46788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 048601          295 KDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE  374 (418)
Q Consensus       295 ~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  374 (418)
                      ++..|.||||+|+..|+.+++++                     |+++|++++.++..|.|||++|+.+|+.+++++|++
T Consensus       154 ~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~  212 (223)
T 2f8y_A          154 QNNREETPLFLAAREGSYETAKV---------------------LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE  212 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHH---------------------HHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence            99999999999988877776665                     899999999999999999999999999999999999


Q ss_pred             cCCCCC
Q 048601          375 FGADVE  380 (418)
Q Consensus       375 ~ga~~~  380 (418)
                      +|+...
T Consensus       213 ~g~~~~  218 (223)
T 2f8y_A          213 YNLVRS  218 (223)
T ss_dssp             TTCSSC
T ss_pred             cCCCcc
Confidence            998653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.3e-40  Score=297.47  Aligned_cols=218  Identities=17%  Similarity=0.151  Sum_probs=118.0

Q ss_pred             ccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchH
Q 048601          122 FVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSE  201 (418)
Q Consensus       122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~  201 (418)
                      ..|.||||+|+..|+.++|++|+++|++++..    ++.+|||+|+.  .|+.+++++|+++|++++.    .+..|.||
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~d~~g~t~   98 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAAT--LEDTKIVKILLFSGLDDSQ----FDDKGNTA   98 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTT--SSSCHHHHHHHHTTCCTTC----CCTTSCCH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC----cCCCCCcH
Confidence            44555555555555555555555555544221    34555555555  5555555555555555554    55555555


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCccCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601          202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEG-RTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR  280 (418)
Q Consensus       202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  280 (418)
                      ||+|+..|+.+++++|++.+.  +++.++..| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+
T Consensus        99 L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A           99 LYYAVDSGNMQTVKLFVKKNW--RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVD  175 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCG--GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCC--CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHH
Confidence            555555555555555555433  445555555 45555555555555555555555544211 14555555555555555


Q ss_pred             HHHHHHHcCCCCCccCCCCCCH-HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601          281 MVEMLIEMGADPTIKDDRGRSC-FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI  359 (418)
Q Consensus       281 ~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  359 (418)
                      ++++|+++|++++.++..|+|| ||+|+..|+.+++++                     |+++|++++..+.       .
T Consensus       176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~---------------------Ll~~gad~~~~~~-------~  227 (285)
T 3kea_A          176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA---------------------LFKYDINIYSANL-------E  227 (285)
T ss_dssp             HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHH---------------------HTTSCBCSTTTTG-------G
T ss_pred             HHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCCCh-------h
Confidence            5555555555555555555554 555554444443333                     5555555555441       3


Q ss_pred             HHHcCCHHHHHHHHHcCCCCC
Q 048601          360 AAIKGHKHVVLLLIEFGADVE  380 (418)
Q Consensus       360 A~~~g~~~~v~~Ll~~ga~~~  380 (418)
                      |+..|+.++|++|+++|++++
T Consensus       228 a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          228 NVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             GGTTTCHHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHcCCCCC
Confidence            444555555555555555554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.3e-39  Score=289.14  Aligned_cols=200  Identities=25%  Similarity=0.265  Sum_probs=137.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCC-CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYE-SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHN  272 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  272 (418)
                      .+..|.||||+|+..|+.+++++|++.+... .++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~   84 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            4445555555555555555555555443311 134445555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHcC-----------------------------------------------CCCCccCCCCCCHHHH
Q 048601          273 AAANGDRRMVEMLIEMG-----------------------------------------------ADPTIKDDRGRSCFDV  305 (418)
Q Consensus       273 A~~~g~~~~v~~Ll~~g-----------------------------------------------~~~~~~~~~g~t~l~~  305 (418)
                      |+..|+.+++++|+++|                                               .+++.++..|.||||+
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  164 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (282)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHH
Confidence            55555555555555544                                               4456666667777776


Q ss_pred             HHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Q 048601          306 ARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY-GLTPLHIAAIKGHKHVVLLLIEFGADVECQDN  384 (418)
Q Consensus       306 A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  384 (418)
                      |+..|+.++                     +++|+++|++++..+.. |+||||+|+..|+.++|++|+++|++++.+|.
T Consensus       165 A~~~g~~~~---------------------v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  223 (282)
T 1oy3_D          165 AVIHKDAEM---------------------VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY  223 (282)
T ss_dssp             HHHTTCHHH---------------------HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCHHH---------------------HHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc
Confidence            666655554                     55589999999998854 99999999999999999999999999999999


Q ss_pred             CCCcHhHHHHhcCCcceeehhhhccCCccccc
Q 048601          385 EGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       385 ~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~~  416 (418)
                      .|+|||++|+..|+.+++++|+  ++|++++.
T Consensus       224 ~g~tpL~~A~~~~~~~~v~~Ll--~~ga~~~~  253 (282)
T 1oy3_D          224 GGRTPLGSALLRPNPILARLLR--AHGAPEPE  253 (282)
T ss_dssp             TSCCHHHHHHTSSCHHHHHHHH--HTTCCCCC
T ss_pred             CCCCHHHHHHHcCCcHHHHHHH--HcCCCcCc
Confidence            9999999999999999999999  66777653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=277.31  Aligned_cols=230  Identities=18%  Similarity=0.216  Sum_probs=205.7

Q ss_pred             cccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601          121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS  200 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t  200 (418)
                      +..|.++|+.|+..|+.+++++|++.|.++..  ....+.+++++|+.  .|+.+++++|++.|.+++.   ..+..|.|
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~---~~~~~~~t   78 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLLHWAAI--NNRIDLVKYYISKGAIVDQ---LGGDLNST   78 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTTC---CBTTTTBC
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCcCC--CCCCCCCHHHHHHH--hCCHHHHHHHHHcCCcchh---hcCCcCCC
Confidence            44688999999999999999999999977633  45678999999999  8999999999999998775   13455899


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC-H
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD-R  279 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~-~  279 (418)
                      |||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGA--DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV  156 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred             hhHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence            9999999999999999998755  678889999999999999999999999999999999999999999999997765 8


Q ss_pred             HHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601          280 RMVEMLIEMGADPTIKDD-RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH  358 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~  358 (418)
                      +++++|++.|++++..+. .|.||||+|+..|+.+++++                     |+++|++++.++..|.|||+
T Consensus       157 ~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~l~  215 (240)
T 3eu9_A          157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL---------------------LLEAGANVDAQNIKGESALD  215 (240)
T ss_dssp             TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH---------------------HHHHTCCTTCBCTTSCBHHH
T ss_pred             HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHH
Confidence            999999999999999887 89999999988887776665                     88999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Q 048601          359 IAAIKGHKHVVLLLIEFGADVE  380 (418)
Q Consensus       359 ~A~~~g~~~~v~~Ll~~ga~~~  380 (418)
                      +|+..|+.+++++|+++|++..
T Consensus       216 ~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          216 LAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHcCcHHHHHHHHHhhhccC
Confidence            9999999999999999998764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.5e-39  Score=290.80  Aligned_cols=239  Identities=21%  Similarity=0.173  Sum_probs=210.9

Q ss_pred             HHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCH
Q 048601          132 VSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRT  211 (418)
Q Consensus       132 ~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~  211 (418)
                      +...+.+.++.|+..+ .+  ...+..+.|+|++|+.  .|+.+++++|+++|++++.    .  +|.||||+|+..|+.
T Consensus         7 i~~~~~~~v~~lL~~~-~~--~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-DT--FKADVHGHSASYYAIA--DNNVRLVCTLLNAGALKNL----L--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             GGGCCHHHHHHHHHST-TT--TCCCTTSCCHHHHHHH--TTCHHHHHHHHHTTGGGSC----C--TTCCHHHHHTTSSSC
T ss_pred             HHhcCHHHHHHHHHhC-CC--CccCCCCCCHHHHHHH--cCCHHHHHHHHhCCCCCCC----C--CCCCHHHHHHHcCCH
Confidence            4455666666666554 22  3456789999999999  8999999999999998876    4  489999999999999


Q ss_pred             HHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-ccHHHHHHHcCCHHHHHHHHHcCC
Q 048601          212 EEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDG-KTSLHNAAANGDRRMVEMLIEMGA  290 (418)
Q Consensus       212 ~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~  290 (418)
                      +++++|++.+.  +++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+
T Consensus        76 ~~v~~Ll~~ga--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           76 KIVKILLFSGL--DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHCCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999998765  778899999999999999999999999999999999999999 799999999999999999999998


Q ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH-HHHHHHcCCHHHH
Q 048601          291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP-LHIAAIKGHKHVV  369 (418)
Q Consensus       291 ~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v  369 (418)
                      +.... ..|.||||+|+..|+.+++++                     |+++|++++.++..|+|| ||+|+..|+.+++
T Consensus       154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~---------------------Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v  211 (285)
T 3kea_A          154 STFDL-AILLSCIHITIKNGHVDMMIL---------------------LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML  211 (285)
T ss_dssp             TTCCC-STHHHHHHHHHHTTCHHHHHH---------------------HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHH
T ss_pred             ccccc-cCCccHHHHHHHcChHHHHHH---------------------HHHcCCCCCcccCCCCChHHHHHHHcCCHHHH
Confidence            77433 278999999999999998877                     788999999999999998 9999999999999


Q ss_pred             HHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccc
Q 048601          370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV  414 (418)
Q Consensus       370 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~  414 (418)
                      ++|+++|++++.+|.       .|+..|+.+++++|++  .|+++
T Consensus       212 ~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~--~g~~~  247 (285)
T 3kea_A          212 QALFKYDINIYSANL-------ENVLLDDAEIAKMIIE--KHVEY  247 (285)
T ss_dssp             HHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHH--HHHHH
T ss_pred             HHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHH--cCCCC
Confidence            999999999998873       5678999999999994  44443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.2e-37  Score=269.85  Aligned_cols=193  Identities=25%  Similarity=0.333  Sum_probs=174.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCccHHH
Q 048601          197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADK-----EAKGKDGKTSLH  271 (418)
Q Consensus       197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~g~t~L~  271 (418)
                      .|.||||+|+..|+.+++++|++..+ .+++.+|..|.||||+|+..|+.+++++|+++|+++     +..+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTC-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            47899999999999999999998633 478889999999999999999999999999999886     667788999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCC-------------CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHH
Q 048601          272 NAAANGDRRMVEMLIEMGADPTIKDD-------------RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLES  338 (418)
Q Consensus       272 ~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~  338 (418)
                      +|+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++                     
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------  139 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL---------------------  139 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHH---------------------
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHH---------------------
Confidence            99999999999999999999988765             79999999988877776665                     


Q ss_pred             HHhCCCCCCcCCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC------CcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          339 LLDKGASTNYCDQYGLTPLHIAAIKGHKHVV----LLLIEFGADV------ECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       339 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~------~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      |+++|++++.+|..|+||||+|+..|+.+++    ++|+++|+++      +.+|..|+|||++|++.|+.+++++|+++
T Consensus       140 Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            8999999999999999999999999999988    9999999988      58999999999999999999999999966


Q ss_pred             cCC
Q 048601          409 QWG  411 (418)
Q Consensus       409 ~~g  411 (418)
                      ...
T Consensus       220 g~~  222 (232)
T 2rfa_A          220 RKH  222 (232)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9.2e-37  Score=259.81  Aligned_cols=190  Identities=26%  Similarity=0.379  Sum_probs=177.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048601          196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA  275 (418)
Q Consensus       196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  275 (418)
                      ..+.||||.|+..|+.+.+++|+..++ .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            457799999999999999999998654 4778899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCC
Q 048601          276 NGDRRMVEMLI-EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG-ASTNYCDQYG  353 (418)
Q Consensus       276 ~g~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g-~~~~~~~~~g  353 (418)
                      .|+.+++++|+ ..+++++..+..|.||||.|+..|+.+++++                     |+++| ++++.++..|
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~~g  140 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL---------------------LLEDGREDIDFQNDFG  140 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHH---------------------HHHHCCCCTTCCCTTS
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHH---------------------HHHcCCCCcCCCCCCC
Confidence            99999999999 5677999999999999999988887776666                     78888 8999999999


Q ss_pred             CcHHHHHHHcCC-----HHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          354 LTPLHIAAIKGH-----KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       354 ~t~L~~A~~~g~-----~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                      +||||+|+..++     .+++++|+++|++++.+|..|+|||++|++.|+.+++++|++
T Consensus       141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            999999999998     999999999999999999999999999999999999999994

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.1e-37  Score=253.65  Aligned_cols=159  Identities=43%  Similarity=0.612  Sum_probs=113.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 048601          235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV  314 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  314 (418)
                      ++|+.||+.|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|+||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            35677777777777777777777777777777777777777777777777777777777777777777777766666555


Q ss_pred             HHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHH
Q 048601          315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV  394 (418)
Q Consensus       315 ~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  394 (418)
                      +++                     |+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+
T Consensus        86 v~~---------------------Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~  144 (169)
T 4gpm_A           86 VKL---------------------LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR  144 (169)
T ss_dssp             HHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHH---------------------HHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            444                     67777777777777777777777777777777777777777777777777777777


Q ss_pred             hcCCcceeehhhhccCCccccc
Q 048601          395 EGGRVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       395 ~~g~~~~v~~Ll~~~~g~~~~~  416 (418)
                      +.|+.+++++|+  +.|++++|
T Consensus       145 ~~g~~~iv~~Ll--~~GA~ie~  164 (169)
T 4gpm_A          145 EHGNEEVVKLLE--KQGGWLEH  164 (169)
T ss_dssp             HTTCHHHHHHHH--TC------
T ss_pred             HcCCHHHHHHHH--HCCCCcCC
Confidence            777777777777  66666665

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.4e-38  Score=278.10  Aligned_cols=197  Identities=28%  Similarity=0.331  Sum_probs=133.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEY--ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLH  271 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~  271 (418)
                      .|.+|.||||+|+..|+.+++++|++....  .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            566677777777777777777777665432  245666777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601          272 NAAANGDRRMVEMLIEMGAD------PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS  345 (418)
Q Consensus       272 ~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~  345 (418)
                      +|+..|+.+++++|++.|++      ++..+..|.||||+|+..|+.+++++                     |+++|++
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~  142 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL---------------------LVSLGAD  142 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHHTCC
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCC
Confidence            77777777777777777654      34556667777777666665555444                     6667777


Q ss_pred             CCcCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcc
Q 048601          346 TNYCDQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTM  413 (418)
Q Consensus       346 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~  413 (418)
                      ++.++. .|.||||+|+..|+.++|++|+++|++++.+|..|+|||++|+..|+.+++++|+  +.|++
T Consensus       143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll--~~ga~  209 (236)
T 1ikn_D          143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG--QLTLE  209 (236)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH--TTSCG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHH--Hcchh
Confidence            777665 6777777777777777777777777777777777777777777777777777777  44444

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-36  Score=264.59  Aligned_cols=195  Identities=27%  Similarity=0.393  Sum_probs=176.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCccHHHHHH
Q 048601          198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG--ADKEA-KGKDGKTSLHNAA  274 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~  274 (418)
                      |.||||+|+..|+.+++++|++.+. ...+..+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            5799999999999999999998765 344558899999999999999999999999999  55555 7889999999999


Q ss_pred             HcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601          275 ANGDRRMVEMLIEMG--ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY  352 (418)
Q Consensus       275 ~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~  352 (418)
                      ..|+.+++++|+++|  ++++..+..|.||||.|+..|+.+++++                     |+++|++++.++..
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~---------------------Ll~~g~~~~~~~~~  139 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF---------------------LIENGASVRIKDKF  139 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCSCCCCTT
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHH---------------------HHHcCCCccccCCC
Confidence            999999999999999  8899999999999999988887776665                     88999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          353 GLTPLHIAAIKGHKHVVLLLIEFG-ADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       353 g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      |.||||+|+..|+.+++++|+++| ++++.+|..|+|||++|+..|+.+++++|++ +.|++++
T Consensus       140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~~ga~~~  202 (228)
T 2dzn_A          140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE-KYGAEYD  202 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHCCCSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCCCCC
Confidence            999999999999999999999999 9999999999999999999999999999992 3355544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-37  Score=282.55  Aligned_cols=226  Identities=25%  Similarity=0.321  Sum_probs=197.8

Q ss_pred             eeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCC
Q 048601          118 FKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKD  197 (418)
Q Consensus       118 ~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  197 (418)
                      ......|.|+|+.||..|++++|++|+++|++++.  .+..+.|+||+|+.  .|+.+++++|+++|++++.    .+..
T Consensus        34 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~  105 (299)
T 1s70_B           34 TKVKFDDGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTALHQACI--DDNVDMVKFLVENGANINQ----PDNE  105 (299)
T ss_dssp             CCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC--BCTTCCBHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTT
T ss_pred             cccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC----CCCC
Confidence            34556799999999999999999999999987643  45678999999999  8999999999999999988    8999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCC-----------------
Q 048601          198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES-GADK-----------------  259 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-~~~~-----------------  259 (418)
                      |.||||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..++.+++++++.. +.++                 
T Consensus       106 g~tpL~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  183 (299)
T 1s70_B          106 GWIPLHAAASCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ  183 (299)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHH
Confidence            9999999999999999999998765  7788999999999999999999999877753 4332                 


Q ss_pred             ---------CCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHc
Q 048601          260 ---------EAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR  330 (418)
Q Consensus       260 ---------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~  330 (418)
                               ...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++             
T Consensus       184 ~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~-------------  250 (299)
T 1s70_B          184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI-------------  250 (299)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH-------------
T ss_pred             HHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHH-------------
Confidence                     2356789999999999999999999999999999999999999999998888776665             


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 048601          331 GELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF  375 (418)
Q Consensus       331 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  375 (418)
                              |+++|++++.+|..|.||||+|+.. ..+.++.|++.
T Consensus       251 --------Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          251 --------LVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             --------HHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             --------HHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence                    8999999999999999999999764 45555555544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-38  Score=289.14  Aligned_cols=256  Identities=17%  Similarity=0.152  Sum_probs=192.6

Q ss_pred             cCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCC---------------hhhh
Q 048601           95 FGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLS---------------SAEA  159 (418)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~---------------~~~~  159 (418)
                      ....+.++.++..-.     ++.. .+..|.++++     |+.++|++|+++|.+......               ....
T Consensus        29 ~~~~dlv~~ll~~ga-----~i~~-~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~   97 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPL-----KIMK-ALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSN   97 (327)
T ss_dssp             ECCTTCCCSTTTSSC-----CCEE-CBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------
T ss_pred             hhcCchHHHHhhCCc-----cccc-CCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCc
Confidence            334445555554422     1222 2345777766     999999999999876432100               0001


Q ss_pred             hhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHH
Q 048601          160 ESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL  239 (418)
Q Consensus       160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~  239 (418)
                      ...+++|+.  .+..+++++|++.|++++..   .+..|.||||+|+..|+.++|++|++.+.  +++.+|..|.||||+
T Consensus        98 ~~~~~~a~~--~~~~~~~~~l~~~g~dvn~~---~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga--d~n~~d~~g~TpLh~  170 (327)
T 1sw6_A           98 QQQQHVSFD--SLLQEVNDAFPNTQLNLNIP---VDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVK  170 (327)
T ss_dssp             ------CHH--HHHHHHHHHCTTSCCCSCSC---CSTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTBCCTTCCCHHHH
T ss_pred             cchhHHHHH--hhHHHHHHHHHhcCCCcccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHH
Confidence            122355555  56789999999999988851   47889999999999999999999998765  788999999999999


Q ss_pred             HHHcCC---HHHHHHHHHcC-CCCCCCCCCCccHHHHHHH----cCCHHHHHHHHHc--------------------CCC
Q 048601          240 AVNKTS---IGCAKVLLESG-ADKEAKGKDGKTSLHNAAA----NGDRRMVEMLIEM--------------------GAD  291 (418)
Q Consensus       240 A~~~~~---~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~--------------------g~~  291 (418)
                      |+..|+   .++++.|++.+ ++++.++..|.||||+|+.    .|+.+++++|++.                    |++
T Consensus       171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~  250 (327)
T 1sw6_A          171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK  250 (327)
T ss_dssp             HHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred             HHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence            999998   78888888886 7799999999999999999    8999999999987                    899


Q ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHH
Q 048601          292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLL  371 (418)
Q Consensus       292 ~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  371 (418)
                      ++.++..|.||||.|+.                           +++|+++  ++|.+|..|+||||+|+.+|+.++|++
T Consensus       251 ~~~~~~~g~t~L~~a~~---------------------------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~  301 (327)
T 1sw6_A          251 PNDKNGERKDSILENLD---------------------------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDA  301 (327)
T ss_dssp             ---------CHHHHHCS---------------------------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             cccccccCCChhHHHHH---------------------------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999874                           3457777  688999999999999999999999999


Q ss_pred             HHHcCCCCCcCCCCCCcHhHHHHhcC
Q 048601          372 LIEFGADVECQDNEGHAPLHLAVEGG  397 (418)
Q Consensus       372 Ll~~ga~~~~~d~~g~t~l~~A~~~g  397 (418)
                      |+++|+|++.+|..|+||||+|+++|
T Consensus       302 Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          302 LLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            99999999999999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.4e-37  Score=271.85  Aligned_cols=181  Identities=24%  Similarity=0.326  Sum_probs=162.1

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCc
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGAD------KEAKGKDGK  267 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~g~  267 (418)
                      .+..|.||||+|+..|+.+++++|++.+.  +++.++..|.||||+|+..|+.+++++|+++|++      ++..+..|.
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  118 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGC--DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  118 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCC--CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCC
Confidence            88889999999999999999999997654  7788999999999999999999999999999876      466788899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC
Q 048601          268 TSLHNAAANGDRRMVEMLIEMGADPTIKDD-RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST  346 (418)
Q Consensus       268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~  346 (418)
                      ||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++                     |+++|+++
T Consensus       119 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~ga~~  177 (236)
T 1ikn_D          119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL---------------------LLKCGADV  177 (236)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------------HHTTTCCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCC
Confidence            999999999999999999999999999997 99999999998887776665                     89999999


Q ss_pred             CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCcHhHHHHhcC
Q 048601          347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE--CQDNEGHAPLHLAVEGG  397 (418)
Q Consensus       347 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~g  397 (418)
                      +.++..|.||||+|+.+|+.+++++|+++|++..  .++..|.||.+.+....
T Consensus       178 ~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred             CcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence            9999999999999999999999999999999875  78889999887665543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-35  Score=243.82  Aligned_cols=159  Identities=39%  Similarity=0.592  Sum_probs=141.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      ++|+.|+..|+.++|++|++.+.  +++.+|..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Ga--dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGA--DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence            47899999999999999998765  7888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601          280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI  359 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  359 (418)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++                     |+++|++++.+|..|+||||+
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~---------------------Ll~~gad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL---------------------LISKGADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCccccCCCCCCHHHH
Confidence            99999999999999999999999999988877776655                     889999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCc
Q 048601          360 AAIKGHKHVVLLLIEFGADVEC  381 (418)
Q Consensus       360 A~~~g~~~~v~~Ll~~ga~~~~  381 (418)
                      |+.+|+.+++++|+++||+++.
T Consensus       143 A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          143 AREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHTTCHHHHHHHHTC------
T ss_pred             HHHcCCHHHHHHHHHCCCCcCC
Confidence            9999999999999999999864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.3e-36  Score=269.04  Aligned_cols=190  Identities=25%  Similarity=0.321  Sum_probs=166.3

Q ss_pred             CchHHHHHHHcCCHH----HHHHHHhcccCCCCcc----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC----
Q 048601          198 GWSELHVAAAFGRTE----EISSLVRMKEYESLDC----RDKEGRTPLHLAVNK---TSIGCAKVLLESGADKEAK----  262 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~----~~~~~~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~----  262 (418)
                      |.||||.|+..|+.+    ++++|++.+.  +++.    .|..|.||||+|+..   |+.+++++|+++|++++..    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSK--YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCC--CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            678999999999997    4455555444  6666    788899999999998   9999999999988776533    


Q ss_pred             -------CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-------------CCCHHHHHHHcCCHHHHHHHhcCc
Q 048601          263 -------GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR-------------GRSCFDVARDKGHIEVLEVLQRGE  322 (418)
Q Consensus       263 -------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~l~~A~~~~~~~~~~~l~~~~  322 (418)
                             +..|.||||+|+..|+.+++++|+++|++++.++..             |.||||+|+..|+.+++++     
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~-----  154 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY-----  154 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH-----
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH-----
Confidence                   367999999999999999999999999999988876             9999999998887776666     


Q ss_pred             hHHHHHHcCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------CcCC
Q 048601          323 AVLTAARRGELEGLESLLD---KGASTNYCDQYGLTPLHIAAI--KGHKH-------VVLLLIEFGADV-------ECQD  383 (418)
Q Consensus       323 ~~~~a~~~g~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~--~g~~~-------~v~~Ll~~ga~~-------~~~d  383 (418)
                                      |++   +|+++|.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|
T Consensus       155 ----------------Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d  218 (256)
T 2etb_A          155 ----------------LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN  218 (256)
T ss_dssp             ----------------HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCC
T ss_pred             ----------------HHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccC
Confidence                            888   999999999999999999999  88888       999999999999       9999


Q ss_pred             CCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          384 NEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       384 ~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                      ..|+|||++|++.|+.+++++|+++..
T Consensus       219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          219 HQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            999999999999999999999996543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.8e-36  Score=270.76  Aligned_cols=195  Identities=22%  Similarity=0.288  Sum_probs=170.7

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhccc--CCCCc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-----
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKE--YESLD----CRDKEGRTPLHLAVNK---TSIGCAKVLLESGADK-----  259 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~----~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~~~~~-----  259 (418)
                      .+..|.||||.|+..|+.++++.|++...  ...++    ..+..|.||||+|+..   |+.+++++|+++|+++     
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            78889999999999999999999997532  12232    3578999999999987   9999999999987652     


Q ss_pred             --C----CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCC--------------CCCCHHHHHHHcCCHHHHHHHh
Q 048601          260 --E----AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD--------------RGRSCFDVARDKGHIEVLEVLQ  319 (418)
Q Consensus       260 --~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~g~t~l~~A~~~~~~~~~~~l~  319 (418)
                        +    ..+..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++  
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~--  166 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF--  166 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH--
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH--
Confidence              2    2567899999999999999999999999999999887              79999999998887776666  


Q ss_pred             cCchHHHHHHcCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCC-------
Q 048601          320 RGEAVLTAARRGELEGLESLLD---KGASTNYCDQYGLTPLHIAAIKGH---------KHVVLLLIEFGADVE-------  380 (418)
Q Consensus       320 ~~~~~~~a~~~g~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~-------  380 (418)
                                         |++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++++       
T Consensus       167 -------------------Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~  227 (273)
T 2pnn_A          167 -------------------LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE  227 (273)
T ss_dssp             -------------------HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGG
T ss_pred             -------------------HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccc
Confidence                               888   999999999999999999999998         899999999999997       


Q ss_pred             cCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601          381 CQDNEGHAPLHLAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       381 ~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~  409 (418)
                      .+|..|+|||++|++.|+.+++++|+++.
T Consensus       228 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          228 ITNRKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence            48999999999999999999999999543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2e-34  Score=245.28  Aligned_cols=192  Identities=18%  Similarity=0.226  Sum_probs=150.3

Q ss_pred             hhHHHHHHHhhCCHHHHHHHHHcCC-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHH
Q 048601          161 SLYRVATELAANSEDMVSLLLRAGL-SIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL  239 (418)
Q Consensus       161 ~~l~~a~~~~~~~~~~v~~Ll~~g~-~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~  239 (418)
                      ++++.|+.  .|+.++++.|++.+. +++.    .+..|.||||+|+..|+.+++++|++.+.  +++.++..|.||||+
T Consensus         7 ~~L~~A~~--~g~~~~v~~ll~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            7 GALLEAAN--QRDTKKVKEILQDTTYQVDE----VDTEGNTPLNIAVHNNDIEIAKALIDRGA--DINLQNSISDSPYLY   78 (201)
T ss_dssp             THHHHHHH--TTCHHHHHHHHTCTTCCTTC----CCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHH
T ss_pred             cHHHHHHH--hccHHHHHHHHHcCCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCCHHHH
Confidence            44444444  444444444444443 4554    67788888888888888888888887654  677788888899999


Q ss_pred             HHHcCCHHHHHHHH-HcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHH
Q 048601          240 AVNKTSIGCAKVLL-ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG-ADPTIKDDRGRSCFDVARDKGHIEVLEV  317 (418)
Q Consensus       240 A~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~  317 (418)
                      |+..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..+...    
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~----  154 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN----  154 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS----
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch----
Confidence            99888999998888 567788888888899999999999999999999888 888888888999999888776510    


Q ss_pred             HhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601          318 LQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       318 l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                                  .++.+++++|+++|++++.++..|.||||+|+.+|+.+++++|+++|
T Consensus       155 ------------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          155 ------------QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             ------------HHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             ------------hhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                        01134555588899999999999999999999999999999999876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-35  Score=263.96  Aligned_cols=224  Identities=21%  Similarity=0.291  Sum_probs=169.7

Q ss_pred             ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601          120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW  199 (418)
Q Consensus       120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  199 (418)
                      .+..|.|+||+|+..|+.++|+.|++.+...                                 +.+++......+..|.
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------------------------~~~~~~~~~~~~~~g~   55 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRS---------------------------------KKRLTDSEFKDPETGK   55 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHS---------------------------------CCCTTSGGGSCTTTCC
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhc---------------------------------ccccCCcccccCcCCC
Confidence            4556888888888888888888887654322                                 2222211111466788


Q ss_pred             hHHHHHHHc---CCHHHHHHHHhcccC---------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---
Q 048601          200 SELHVAAAF---GRTEEISSLVRMKEY---------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK---  264 (418)
Q Consensus       200 t~L~~A~~~---g~~~~v~~Ll~~~~~---------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---  264 (418)
                      ||||+|+..   |+.+++++|++.+..         ......|..|.||||+|+..|+.+++++|+++|++++..+.   
T Consensus        56 tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~  135 (273)
T 2pnn_A           56 TCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF  135 (273)
T ss_dssp             CHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG
T ss_pred             CHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc
Confidence            888888876   888888888876531         12233567899999999999999999999999999999887   


Q ss_pred             -----------CCccHHHHHHHcCCHHHHHHHHH---cCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHhcCchHHHHH
Q 048601          265 -----------DGKTSLHNAAANGDRRMVEMLIE---MGADPTIKDDRGRSCFDVARDKGH--IEVLEVLQRGEAVLTAA  328 (418)
Q Consensus       265 -----------~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~--~~~~~~l~~~~~~~~a~  328 (418)
                                 .|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+  .+..+++          
T Consensus       136 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~----------  205 (273)
T 2pnn_A          136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV----------  205 (273)
T ss_dssp             GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH----------
T ss_pred             cccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH----------
Confidence                       79999999999999999999999   999999999999999999999776  3333322          


Q ss_pred             HcCCHHHHHHHHhCCCCCC-------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCcHh
Q 048601          329 RRGELEGLESLLDKGASTN-------YCDQYGLTPLHIAAIKGHKHVVLLLIEFGA-DVECQDNEGHAPL  390 (418)
Q Consensus       329 ~~g~~~~~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t~l  390 (418)
                          .+++++|+++|++++       .+|..|+||||+|+.+|+.++|++|+++|+ |+......+++|-
T Consensus       206 ----~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          206 ----TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             ----HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             ----HHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence                467778999999987       489999999999999999999999999999 8877777766653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=8.5e-35  Score=257.37  Aligned_cols=189  Identities=23%  Similarity=0.289  Sum_probs=159.6

Q ss_pred             HHHHHHcCCCCcccccccCCCCchHHHHHHHc---CCHHHHHHHHhcccCCC---------CccCCCCCCcHHHHHHHcC
Q 048601          177 VSLLLRAGLSIEIDERVKTKDGWSELHVAAAF---GRTEEISSLVRMKEYES---------LDCRDKEGRTPLHLAVNKT  244 (418)
Q Consensus       177 v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~~~~~~---------~~~~~~~~~t~L~~A~~~~  244 (418)
                      +++|++.|++++......+..|.||||+|+..   |+.+++++|++.+....         ....|..|.||||+|+..|
T Consensus        22 l~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g  101 (256)
T 2etb_A           22 LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR  101 (256)
T ss_dssp             HHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred             HHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC
Confidence            34555666666532222577888999999998   99999999998765221         1124577999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCC-------------CccHHHHHHHcCCHHHHHHHHH---cCCCCCccCCCCCCHHHHHHH
Q 048601          245 SIGCAKVLLESGADKEAKGKD-------------GKTSLHNAAANGDRRMVEMLIE---MGADPTIKDDRGRSCFDVARD  308 (418)
Q Consensus       245 ~~~~v~~Ll~~~~~~~~~~~~-------------g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~  308 (418)
                      +.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.
T Consensus       102 ~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence            999999999999999999886             9999999999999999999999   999999999999999999998


Q ss_pred             --cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC-------CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601          309 --KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST-------NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV  379 (418)
Q Consensus       309 --~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  379 (418)
                        .++.+..+.+              .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       182 ~~~~~~~~~~~~--------------~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          182 IADNSPENSALV--------------IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HCCSCHHHHHHH--------------HHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCchhhHHH--------------HHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence              7777744432              45777899999999       899999999999999999999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.8e-35  Score=261.16  Aligned_cols=193  Identities=22%  Similarity=0.235  Sum_probs=167.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHh----cccCCCCccC----CCCCCcHHHHHH---HcCCHHHHHHHHHcCCC-----
Q 048601          195 TKDGWSELHVAAAFGRTEEISSLVR----MKEYESLDCR----DKEGRTPLHLAV---NKTSIGCAKVLLESGAD-----  258 (418)
Q Consensus       195 ~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~----~~~~~t~L~~A~---~~~~~~~v~~Ll~~~~~-----  258 (418)
                      +..++++||.|+..|+.+.++.|++    .+.  .++..    +..|.||||+|+   +.|+.+++++|++.|++     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~--~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK--RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            3567899999999999996555554    444  44433    367999999999   77999999999998743     


Q ss_pred             ------CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC--------------CCCCCHHHHHHHcCCHHHHHHH
Q 048601          259 ------KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD--------------DRGRSCFDVARDKGHIEVLEVL  318 (418)
Q Consensus       259 ------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~l~~A~~~~~~~~~~~l  318 (418)
                            ++..+..|.||||+|+..|+.++|++|+++|++++..+              ..|.||||+|+..|+.+++++ 
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~-  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY-  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH-
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH-
Confidence                  44555689999999999999999999999999999988              689999999988887776666 


Q ss_pred             hcCchHHHHHHcCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------
Q 048601          319 QRGEAVLTAARRGELEGLESLLD---KGASTNYCDQYGLTPLHIAAIKGH---------KHVVLLLIEFGADV-------  379 (418)
Q Consensus       319 ~~~~~~~~a~~~g~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~-------  379 (418)
                                          |++   +|++++.+|..|+||||+|+..|+         .+++++|+++|+++       
T Consensus       159 --------------------Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~  218 (260)
T 3jxi_A          159 --------------------LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE  218 (260)
T ss_dssp             --------------------HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             --------------------HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchh
Confidence                                888   899999999999999999999888         79999999999998       


Q ss_pred             CcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601          380 ECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW  410 (418)
Q Consensus       380 ~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  410 (418)
                      +.+|..|+|||++|++.|+.+++++|+++..
T Consensus       219 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            6799999999999999999999999996544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=5.6e-34  Score=252.69  Aligned_cols=211  Identities=25%  Similarity=0.285  Sum_probs=171.0

Q ss_pred             cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601          123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL  202 (418)
Q Consensus       123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L  202 (418)
                      .|+++||.|+..|+.+.|+.|++                                 +|++.|.+++......+..|.|||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~---------------------------------~l~~~~~~~~~~~~~~~~~g~t~L   50 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLS---------------------------------FLLTHKKRLTDEEFREPSTGKTCL   50 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHH---------------------------------HHHHHTCCTTSGGGSCTTTCCCHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHH---------------------------------HHHhcCCCcchhhhhccCCCCcHH
Confidence            36666666666666665554443                                 444566666653322446788888


Q ss_pred             HHHH---HcCCHHHHHHHHhcccC---------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------
Q 048601          203 HVAA---AFGRTEEISSLVRMKEY---------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-------  263 (418)
Q Consensus       203 ~~A~---~~g~~~~v~~Ll~~~~~---------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------  263 (418)
                      |+|+   ..|+.+++++|++.+..         ..++..|..|.||||+|+..|+.+++++|+++|++++..+       
T Consensus        51 ~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~  130 (260)
T 3jxi_A           51 PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP  130 (260)
T ss_dssp             HHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSS
T ss_pred             HHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCc
Confidence            8888   66888888888876532         2345566689999999999999999999999999999998       


Q ss_pred             -------CCCccHHHHHHHcCCHHHHHHHHH---cCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHhcCchHHHHHHcC
Q 048601          264 -------KDGKTSLHNAAANGDRRMVEMLIE---MGADPTIKDDRGRSCFDVARDKGH--IEVLEVLQRGEAVLTAARRG  331 (418)
Q Consensus       264 -------~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~--~~~~~~l~~~~~~~~a~~~g  331 (418)
                             ..|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++  .+.++++             
T Consensus       131 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~-------------  197 (260)
T 3jxi_A          131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV-------------  197 (260)
T ss_dssp             SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH-------------
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH-------------
Confidence                   689999999999999999999999   999999999999999999997665  4444432             


Q ss_pred             CHHHHHHHHhCCCCC-------CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 048601          332 ELEGLESLLDKGAST-------NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE  380 (418)
Q Consensus       332 ~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  380 (418)
                       .+++++|+++|+++       +..+..|+||||+|+..|+.++|++|+++|++..
T Consensus       198 -~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          198 -TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             -HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence             46788899999998       6799999999999999999999999999987653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=258.05  Aligned_cols=189  Identities=23%  Similarity=0.336  Sum_probs=172.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCccHHHHHH---
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAA---  274 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~---  274 (418)
                      .+++|.|+..|+.+.++.++.......++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            36788899999999999998765544578899999999999999999999999999998 99999999999999999   


Q ss_pred             --HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601          275 --ANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY  352 (418)
Q Consensus       275 --~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~  352 (418)
                        ..++.+++++|++.|.+.+..+..|+||||+|+..|+.+++++                     |+++|+++|.+|..
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~---------------------Ll~~gad~n~~d~~  215 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKA---------------------LLACEADVNVQDDD  215 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTT
T ss_pred             hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH---------------------HHhCCCCCCCCCCC
Confidence              6688999999999999999999999999999988887776665                     88999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       353 g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      |+||||+|+..|+.++|++|++ .|++++.+|..|+|||++|++.|+.+++++|+++
T Consensus       216 G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          216 GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999 8999999999999999999999999999999854

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.2e-33  Score=238.79  Aligned_cols=162  Identities=29%  Similarity=0.292  Sum_probs=146.9

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601          227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA  306 (418)
Q Consensus       227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  306 (418)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            66788899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Q 048601          307 RDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG  386 (418)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  386 (418)
                      +..|+.+++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       109 ~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  167 (192)
T 2rfm_A          109 IIFGYSEMSYF---------------------LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG  167 (192)
T ss_dssp             HHHTCHHHHHH---------------------HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred             HHcCCHHHHHH---------------------HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            88777666655                     888999999999999999999999999999999999999999999999


Q ss_pred             CcHhHHHHhcCCcceeehhhhcc
Q 048601          387 HAPLHLAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       387 ~t~l~~A~~~g~~~~v~~Ll~~~  409 (418)
                      .|||++|+..|+.+++++|++.+
T Consensus       168 ~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          168 LTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999998653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5.2e-33  Score=230.43  Aligned_cols=170  Identities=25%  Similarity=0.308  Sum_probs=149.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601          198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG  277 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g  277 (418)
                      +.+|||.|+..|+.+++++|++.+. ..++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGD-NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCS-GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCc-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence            3589999999999999999998765 347888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q 048601          278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL  357 (418)
Q Consensus       278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L  357 (418)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|.|||
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l  139 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA---------------------LLARGADLTTEADSGYTPM  139 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCccccCCCCCCHH
Confidence            9999999999999999999999999999988877776665                     8899999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601          358 HIAAIKGHKHVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       358 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      |+|+..|+.+++++|+++|+++..++..|.||
T Consensus       140 ~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          140 DLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            99999999999999999999998888888776

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-35  Score=269.47  Aligned_cols=261  Identities=15%  Similarity=0.091  Sum_probs=188.9

Q ss_pred             CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccc-------------cCCCCch
Q 048601          134 NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERV-------------KTKDGWS  200 (418)
Q Consensus       134 ~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~-------------~~~~~~t  200 (418)
                      ....++|++|+++|+++..  ....+.++++       |+.+++++|+++|++++.....             ......+
T Consensus        29 ~~~~dlv~~ll~~ga~i~~--~~~~g~~~~~-------g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMK--ALPSPVVNDN-------EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ   99 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEE--CBCCCCCCCH-------HHHHHHHHHHHHHHC---------------------------
T ss_pred             hhcCchHHHHhhCCccccc--CCCCCCcccC-------chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccc
Confidence            3455779999999988744  3345666653       7999999999999876542110             0011122


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC-
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDC-RDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD-  278 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~-  278 (418)
                      .+|.|+..+..+++++|++.+.  +++. +|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+ 
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~--dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQL--NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCC--CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCC--CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence            3577888888888888886554  7888 89999999999999999999999999999999999999999999999998 


Q ss_pred             --HHHHHHHHHcC-CCCCccCCCCCCHHHHHHH----cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 048601          279 --RRMVEMLIEMG-ADPTIKDDRGRSCFDVARD----KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ  351 (418)
Q Consensus       279 --~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~----~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~  351 (418)
                        .++++.|++.+ ++++.++..|+||||+|+.    .|+.+++++|++......... +...+...+.+.|++++..+.
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~-~~~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK-QNRPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG-GGCCEEEC-------------
T ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc-cchHHHhhhhcccCCcccccc
Confidence              78888888887 7899999999999999999    899999999865443322111 111111223445899999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccccc
Q 048601          352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       352 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~~  416 (418)
                      .|.||||+|+.      +++|+++  +++.+|..|+||||+|++.|+.++|++|+  +.|++++.
T Consensus       257 ~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll--~~Gad~~~  311 (327)
T 1sw6_A          257 ERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALL--DYGADPFI  311 (327)
T ss_dssp             ---CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHH--HTTCCTTC
T ss_pred             cCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHH--HcCCCCcc
Confidence            99999999985      9999999  58889999999999999999999999999  56777653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.2e-32  Score=227.59  Aligned_cols=157  Identities=34%  Similarity=0.479  Sum_probs=125.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601          230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK  309 (418)
Q Consensus       230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  309 (418)
                      ...+.++|+.|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            44566788888888888888888888888888888888888888888888888888888888888888888888887777


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      |+.+++++                     |+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        91 ~~~~~~~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  149 (169)
T 2y1l_E           91 GHLEIVEV---------------------LLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA  149 (169)
T ss_dssp             TCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCHHHHHH---------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            66665554                     777788888888888888888888888888888888888888888888888


Q ss_pred             hHHHHhcCCcceeehhhh
Q 048601          390 LHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       390 l~~A~~~g~~~~v~~Ll~  407 (418)
                      |++|++.|+.+++++|++
T Consensus       150 l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          150 FDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHH
Confidence            888888888888888873

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.4e-32  Score=226.71  Aligned_cols=153  Identities=29%  Similarity=0.345  Sum_probs=90.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI  312 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  312 (418)
                      |.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            45556666666666666666655555555555566666666666666666666666655555555555665555555444


Q ss_pred             HHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHH
Q 048601          313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL  392 (418)
Q Consensus       313 ~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~  392 (418)
                      +++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++
T Consensus        83 ~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  141 (167)
T 3v31_A           83 DIVKM---------------------LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL  141 (167)
T ss_dssp             HHHHH---------------------HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHH---------------------HHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            44333                     555555666556666666666666666666666666666666666666666666


Q ss_pred             HHhcCCcceeehhh
Q 048601          393 AVEGGRVEPLLFIW  406 (418)
Q Consensus       393 A~~~g~~~~v~~Ll  406 (418)
                      |+..|+.+++++|+
T Consensus       142 A~~~~~~~~~~~L~  155 (167)
T 3v31_A          142 AVALGYRSVQQVIE  155 (167)
T ss_dssp             HHHHTCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHH
Confidence            66666666666665

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=255.95  Aligned_cols=203  Identities=20%  Similarity=0.159  Sum_probs=170.8

Q ss_pred             HHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601          177 VSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG  256 (418)
Q Consensus       177 v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~  256 (418)
                      ++.|++.|++++... ..+..+.||||.|+..|+.+++++|++.+.  +++.+|..|.||||+|+..|+.+++++|+++|
T Consensus         1 v~~ll~~~~~~~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKAR-RARLNPLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCC-CTTSCHHHHHHHHHHHTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCcccc-ccccchhHHHHHHHHcCCHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            467888888876522 245667889999999999999999998665  77889999999999999999999999999999


Q ss_pred             CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHH--HHcCCHHHHHHHhcCchHHHHHHcCCH
Q 048601          257 ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVA--RDKGHIEVLEVLQRGEAVLTAARRGEL  333 (418)
Q Consensus       257 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~l~~~~~~~~a~~~g~~  333 (418)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|  +..|+.+++++                
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~----------------  141 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY----------------  141 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHH----------------
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHH----------------
Confidence            9999999999999999999999999999999999999986 6999999998  77666665555                


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601          334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD--VECQDNEGHAPLHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       334 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  406 (418)
                           |+++|++++..+..|.||++.++..+   .+++|++.|++  ++.+|..|+|||++|+.+|+.++|+-++
T Consensus       142 -----Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          142 -----LADVEQSMGLMNSGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             -----HHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             -----HHHcCCCcccccCCchHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence                 89999999999999999998655443   33688999998  7789999999999999999999998654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=4.4e-32  Score=229.09  Aligned_cols=160  Identities=31%  Similarity=0.382  Sum_probs=151.2

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      +|..|.||||+|+..|+.+++++|++.+.  +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFD--KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhcc--ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            78899999999999999999999998765  7788899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601          274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG  353 (418)
Q Consensus       274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g  353 (418)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g  167 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK---------------------LLELGADISARDLTG  167 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCBCTTS
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHCCCCCCCcCCCC
Confidence            99999999999999999999999999999999988887776665                     889999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC
Q 048601          354 LTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       354 ~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                      .|||++|+..|+.+++++|+++|
T Consensus       168 ~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          168 LTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.4e-32  Score=225.41  Aligned_cols=156  Identities=31%  Similarity=0.405  Sum_probs=83.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601          198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG  277 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g  277 (418)
                      ..|||+.|+..|+.+++++|++.+.  +++..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCC--CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            3455555555555555555554332  444555555555555555 5555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCcH
Q 048601          278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS-TNYCDQYGLTP  356 (418)
Q Consensus       278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~  356 (418)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++ ++..+..|.||
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~~g~t~  140 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF---------------------LVKHTASNVGHRNHKGDTA  140 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHHSCCCTTCCCTTSCCH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHccCCCCCCcCCCCCcH
Confidence            5555555555555555555555555555554444443333                     4455544 35555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC
Q 048601          357 LHIAAIKGHKHVVLLLIEFGA  377 (418)
Q Consensus       357 L~~A~~~g~~~~v~~Ll~~ga  377 (418)
                      ||+|+.+|+.+++++|+++||
T Consensus       141 l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          141 CDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHcCCHHHHHHHHHhCC
Confidence            555555555555555555554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=100.00  E-value=1.5e-35  Score=274.07  Aligned_cols=261  Identities=12%  Similarity=0.106  Sum_probs=179.4

Q ss_pred             ccchHHHHHHHHCCCHHHHHHHHhcchhhh-hcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601          122 FVGPFLLRHAVSNGDFNAVKSILKRQKMIL-AGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS  200 (418)
Q Consensus       122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t  200 (418)
                      ..+.||||+|+..|+.++|++|+++++... .......+.+||++|+.  .|+.++|++|+++|+++.... ..+.+ .|
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~--~G~~eiv~~Ll~~gad~~~~~-i~~~~-~T  165 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE--NGHLHVLNRLCELAPTEIMAM-IQAEN-YH  165 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH--TTCHHHHHHHHHSCTTTHHHH-HSHHH-HH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH--cCCHHHHHHHHhCCCCccccc-cCCCC-CC
Confidence            346799999999999999999999886211 01123467789999999  899999999999997632100 02222 89


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCcc--CCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601          201 ELHVAAAFGRTEEISSLVRMKEYESLDC--RDKEGRTPLHLAV-NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG  277 (418)
Q Consensus       201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g  277 (418)
                      |||+|+..|+.+++++|++.+.  +++.  .|..|.||||+|+ ..|+.+++++|+++|+       .|.|||++|+..|
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga--~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g  236 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAP--TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG  236 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCG--GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT
T ss_pred             HHHHHHHCCCHHHHHHHHHcCC--ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC
Confidence            9999999999999999998765  4444  6778899999999 9999999999998774       3789999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC------chHHHHHHcCCHHHHHHHHhC---------
Q 048601          278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------EAVLTAARRGELEGLESLLDK---------  342 (418)
Q Consensus       278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~------~~~~~a~~~g~~~~~~~Ll~~---------  342 (418)
                      +.+++++|+++|++++..+    ++++.|+..|+.++++.....      ..+......+..+.+++|++.         
T Consensus       237 ~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~  312 (376)
T 2aja_A          237 EKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT  312 (376)
T ss_dssp             TTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSC
T ss_pred             CHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhcc
Confidence            9999999999998876554    367778888887754321100      001112223456778888764         


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601          343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       343 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  406 (418)
                      |++++    .+.||||+|+..|+.++|++|++.|   ..++..+.|++++|-.+|+.++++.=+
T Consensus       313 g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          313 ATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL  369 (376)
T ss_dssp             CSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred             CCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence            44433    4679999999999999999999976   446788999999999999999988654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=7.4e-32  Score=221.16  Aligned_cols=157  Identities=28%  Similarity=0.380  Sum_probs=147.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601          232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH  311 (418)
Q Consensus       232 ~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  311 (418)
                      ...|||+.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45689999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCcHh
Q 048601          312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD-VECQDNEGHAPL  390 (418)
Q Consensus       312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l  390 (418)
                      .+++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|||
T Consensus        83 ~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l  141 (162)
T 1ihb_A           83 LDTLQT---------------------LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  141 (162)
T ss_dssp             HHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             HHHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHH
Confidence            888776                     8889999999999999999999999999999999999998 599999999999


Q ss_pred             HHHHhcCCcceeehhhhccCCc
Q 048601          391 HLAVEGGRVEPLLFIWLKQWGT  412 (418)
Q Consensus       391 ~~A~~~g~~~~v~~Ll~~~~g~  412 (418)
                      ++|+..|+.+++++|+  +.|+
T Consensus       142 ~~A~~~~~~~~~~~Ll--~~GA  161 (162)
T 1ihb_A          142 DLARLYGRNEVVSLMQ--ANGA  161 (162)
T ss_dssp             HHHHHTTCHHHHHHHH--HTC-
T ss_pred             HHHHHcCCHHHHHHHH--HhCC
Confidence            9999999999999999  4554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-32  Score=220.32  Aligned_cols=150  Identities=28%  Similarity=0.399  Sum_probs=112.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 048601          234 RTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE  313 (418)
Q Consensus       234 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  313 (418)
                      .|+|+.|++.|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            467777777777777777777777665 4666777777777777777777777777777777777777777776666555


Q ss_pred             HHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601          314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA  393 (418)
Q Consensus       314 ~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  393 (418)
                      ++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus        82 ~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  140 (153)
T 1awc_B           82 IVEV---------------------LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             HHHH---------------------HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHH---------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            5444                     6777777777777788888888888888888888888888888888888888888


Q ss_pred             HhcCCcceeehh
Q 048601          394 VEGGRVEPLLFI  405 (418)
Q Consensus       394 ~~~g~~~~v~~L  405 (418)
                      +.+|+.+++++|
T Consensus       141 ~~~~~~~i~~~L  152 (153)
T 1awc_B          141 IDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            888888877776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.1e-31  Score=220.07  Aligned_cols=160  Identities=34%  Similarity=0.475  Sum_probs=142.4

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      ....+.++|+.|+..|+.+++++|++.+.  +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGA--DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            34456789999999999999999998754  6788899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601          274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG  353 (418)
Q Consensus       274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g  353 (418)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g  146 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV---------------------LLKNGADVNAQDKFG  146 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTS
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCC
Confidence            99999999999999999999999999999999888877776655                     888999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC
Q 048601          354 LTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       354 ~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                      .|||++|+.+|+.+++++|+++|
T Consensus       147 ~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          147 KTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=9.6e-32  Score=221.67  Aligned_cols=160  Identities=24%  Similarity=0.347  Sum_probs=149.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc
Q 048601          197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN  276 (418)
Q Consensus       197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  276 (418)
                      .|.||||.|+..|+.+++++|++.+.  +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN--VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC--CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            46799999999999999999998764  6888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 048601          277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP  356 (418)
Q Consensus       277 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~  356 (418)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|.||
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM---------------------LLESGADPTIETDSGYNS  138 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCH
Confidence            99999999999999999999999999999998887776665                     889999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Q 048601          357 LHIAAIKGHKHVVLLLIEFGADV  379 (418)
Q Consensus       357 L~~A~~~g~~~~v~~Ll~~ga~~  379 (418)
                      |++|+..|+.+++++|+++++++
T Consensus       139 l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          139 MDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999999988654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=2.7e-32  Score=243.65  Aligned_cols=189  Identities=21%  Similarity=0.277  Sum_probs=170.4

Q ss_pred             hhhHHHHHHHhhCCHHHHHHHHHcCCC--CcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHH
Q 048601          160 ESLYRVATELAANSEDMVSLLLRAGLS--IEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPL  237 (418)
Q Consensus       160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L  237 (418)
                      .++++.|+.  .|+.+.++.+++.+.+  ++.    .|..|.||||+|+..|+.+++++|++.+. .+++..+..|.|||
T Consensus        77 ~~~l~~a~~--~~~~~~~~~l~~~~~~~~~n~----~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpL  149 (276)
T 4hbd_A           77 RSDAHPELV--RRHLVTFRAMSARLLDYVVNI----ADSNGNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNRAGYSPI  149 (276)
T ss_dssp             STTCCHHHH--HHHHHHHHHHCHHHHHHHHTC----CCTTSCCHHHHHHHTTCHHHHHHHHHTSC-CCTTCCCTTSCCHH
T ss_pred             ccCCCHHHH--HHHHHHHHHHHHHHHhhcCcC----CCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CcCCCCCCCCCCHH
Confidence            345566666  6788899988887665  444    89999999999999999999999998764 47788999999999


Q ss_pred             HHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601          238 HLAV-----NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI  312 (418)
Q Consensus       238 ~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  312 (418)
                      |+|+     ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~  229 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK  229 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            9999     67889999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601          313 EVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       313 ~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                      +++++                     |++ .|++++.+|..|.||||+|+.+|+.+++++|++++
T Consensus       230 ~iv~~---------------------Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          230 EIAGL---------------------LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHH---------------------HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHH---------------------HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            77666                     787 89999999999999999999999999999999975

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=4.3e-32  Score=224.90  Aligned_cols=156  Identities=28%  Similarity=0.344  Sum_probs=146.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGAD-KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH  311 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  311 (418)
                      +.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999999887 88899999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhH
Q 048601          312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH  391 (418)
Q Consensus       312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  391 (418)
                      .+++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus        82 ~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  140 (172)
T 3v30_A           82 TDIVGL---------------------LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD  140 (172)
T ss_dssp             HHHHHH---------------------HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHH---------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            776665                     88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcceeehhhhcc
Q 048601          392 LAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       392 ~A~~~g~~~~v~~Ll~~~  409 (418)
                      +|+..|+.+++++|+++.
T Consensus       141 ~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A          141 LAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHH
Confidence            999999999999999543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=1.6e-31  Score=222.89  Aligned_cols=168  Identities=22%  Similarity=0.310  Sum_probs=151.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc
Q 048601          197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN  276 (418)
Q Consensus       197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  276 (418)
                      .+.++|+.|+..|+.+++++|++..+ .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTT-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            45689999999999999999998654 46788999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 048601          277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP  356 (418)
Q Consensus       277 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~  356 (418)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++..+..|.||
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~tp  141 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED---------------------LVANGALVSICNKYGEMP  141 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCSSBCCTTSCCG
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHCCCCcchhccCCCCc
Confidence            99999999999999999999999999999988887776665                     889999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Q 048601          357 LHIAAIKGHKHVVLLLIEFGADVECQDNEG  386 (418)
Q Consensus       357 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  386 (418)
                      |++|+..++.+++++|+++|++++..+..+
T Consensus       142 l~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          142 VDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            999999999999999999999998766554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.4e-31  Score=223.26  Aligned_cols=163  Identities=23%  Similarity=0.261  Sum_probs=149.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601          231 KEGRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK  309 (418)
Q Consensus       231 ~~~~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  309 (418)
                      ..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4578999999999999999999998 678999999999999999999999999999999999999999999999999988


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      |+.+++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        83 ~~~~~v~~---------------------Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  141 (179)
T 3f6q_A           83 GHRDIVQK---------------------LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP  141 (179)
T ss_dssp             TCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCG
T ss_pred             CCHHHHHH---------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCc
Confidence            87776665                     899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcCCcceeehhhhccCCccccc
Q 048601          390 LHLAVEGGRVEPLLFIWLKQWGTMVSH  416 (418)
Q Consensus       390 l~~A~~~g~~~~v~~Ll~~~~g~~~~~  416 (418)
                      |++|+..++.+++++|+  +.|++++.
T Consensus       142 l~~A~~~~~~~~~~~L~--~~g~~~~~  166 (179)
T 3f6q_A          142 VDKAKAPLRELLRERAE--KMGQNLNR  166 (179)
T ss_dssp             GGGSCHHHHHHHHHHHH--HTTCCCSC
T ss_pred             HHHHHHHHHHHHHHHHH--HhhcCccc
Confidence            99999999999999999  66666553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2.9e-31  Score=218.34  Aligned_cols=161  Identities=29%  Similarity=0.364  Sum_probs=109.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      .+..+.+||+.|+..|+.+++++|++... .+.+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            45556777777777777777777776443 45556666677777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601          274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG  353 (418)
Q Consensus       274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g  353 (418)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g  141 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---------------------LLQHGADPTKKNRDG  141 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTS
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCcccCCCC
Confidence            77777777777777777777666666666666666555554444                     566666666666666


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCC
Q 048601          354 LTPLHIAAIKGHKHVVLLLIEFGA  377 (418)
Q Consensus       354 ~t~L~~A~~~g~~~~v~~Ll~~ga  377 (418)
                      .||||+|+. |+.+++++|+++|+
T Consensus       142 ~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          142 NTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CChhHhHhc-CChHHHHHHhhccc
Confidence            666666554 66666666666654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.7e-31  Score=219.69  Aligned_cols=158  Identities=30%  Similarity=0.393  Sum_probs=146.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601          229 RDKEGRTPLHLAVNKTSIGCAKVLLE-SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR  307 (418)
Q Consensus       229 ~~~~~~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  307 (418)
                      .+..+.|||+.|++.|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            46778999999999999999999998 46677888889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC
Q 048601          308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH  387 (418)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~  387 (418)
                      ..|+.+++++                     |+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        84 ~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  142 (165)
T 3twr_A           84 SYGHYEVAEL---------------------LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN  142 (165)
T ss_dssp             HTTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HcCcHHHHHH---------------------HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            8887776665                     8899999999999999999999999999999999999999999999999


Q ss_pred             cHhHHHHhcCCcceeehhhhc
Q 048601          388 APLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       388 t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      |||++|++ |+.+++++|+.+
T Consensus       143 t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A          143 TPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             CTGGGSCT-TCHHHHHHHHTC
T ss_pred             ChhHhHhc-CChHHHHHHhhc
Confidence            99999877 899999999943

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=5.5e-31  Score=214.53  Aligned_cols=152  Identities=30%  Similarity=0.407  Sum_probs=77.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD  278 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~  278 (418)
                      .|||+.|+..|+.+++++|++. ...+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            3555555555555555555554 223445555555555555 55555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601          279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH  358 (418)
Q Consensus       279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~  358 (418)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++ ++++.++..|.||||
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF---------------------LAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHTT-SCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHH---------------------HHhc-cCCCCcCCCCCCHHH
Confidence            555555555555555554444444444444444333333                     3333 444444444444444


Q ss_pred             HHHHcCCHHHHHHHHH
Q 048601          359 IAAIKGHKHVVLLLIE  374 (418)
Q Consensus       359 ~A~~~g~~~~v~~Ll~  374 (418)
                      +|+..|+.+++++|++
T Consensus       139 ~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          139 LALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHSCCHHHHHHHHT
T ss_pred             HHHHcCcHHHHHHHHh
Confidence            4444444444444443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.4e-30  Score=210.01  Aligned_cols=150  Identities=30%  Similarity=0.440  Sum_probs=122.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD  278 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~  278 (418)
                      .++|+.|+..|+.+++++|++.+.  +++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            478888888888888888887655  333 46778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601          279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH  358 (418)
Q Consensus       279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~  358 (418)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..|.||||
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~  138 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL---------------------LIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCccccCCCCCCHHH
Confidence            888888888888888888888888888877776665555                     77888888888888888888


Q ss_pred             HHHHcCCHHHHHHH
Q 048601          359 IAAIKGHKHVVLLL  372 (418)
Q Consensus       359 ~A~~~g~~~~v~~L  372 (418)
                      +|+.+|+.+++++|
T Consensus       139 ~A~~~~~~~i~~~L  152 (153)
T 1awc_B          139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888888876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=2e-30  Score=211.24  Aligned_cols=153  Identities=28%  Similarity=0.402  Sum_probs=144.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH  311 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  311 (418)
                      +.|||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46899999999999999999998 44899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhH
Q 048601          312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH  391 (418)
Q Consensus       312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  391 (418)
                      .+++++                     |+++|++++.++..|+||||+|+..|+.+++++|+++ ++++.+|..|.|||+
T Consensus        81 ~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           81 LDTLKV---------------------LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             HHHHHH---------------------HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             HHHHHH---------------------HHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence            888776                     8899999999999999999999999999999999999 999999999999999


Q ss_pred             HHHhcCCcceeehhhhc
Q 048601          392 LAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       392 ~A~~~g~~~~v~~Ll~~  408 (418)
                      +|++.|+.+++++|+++
T Consensus       139 ~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHhh
Confidence            99999999999999853

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.3e-31  Score=234.29  Aligned_cols=187  Identities=16%  Similarity=0.174  Sum_probs=136.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048601          196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA  275 (418)
Q Consensus       196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  275 (418)
                      ..|.||||.|+..|+.++++.|++++.  +++. +..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~--~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGM--RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCC--Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            357899999999999999999998776  4443 3678999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC-
Q 048601          276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGL-  354 (418)
Q Consensus       276 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~-  354 (418)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++                     |+++|++++..+..|. 
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~~~~  138 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF---------------------LVESGAAVFAMTYSDMQ  138 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCSSSCC
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCcceecCCCCc
Confidence            999999999999999999999999999999988887776665                     8899999999988776 


Q ss_pred             cHHHHH--HHcCCHHHHHHHHHcCCCCCcC---------CCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          355 TPLHIA--AIKGHKHVVLLLIEFGADVECQ---------DNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       355 t~L~~A--~~~g~~~~v~~Ll~~ga~~~~~---------d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      ||||+|  +..|+.+++++|+++|++++..         +..+.+++++|++.|.  ++++|...
T Consensus       139 t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~  201 (239)
T 1ycs_B          139 TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE  201 (239)
T ss_dssp             CHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC
T ss_pred             chHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec
Confidence            999999  7889999999999999988765         6678899999988886  66766643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.5e-33  Score=244.31  Aligned_cols=208  Identities=17%  Similarity=0.125  Sum_probs=171.3

Q ss_pred             HHHHHhcchhhhh-cCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 048601          140 VKSILKRQKMILA-GLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLV  218 (418)
Q Consensus       140 vk~Ll~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll  218 (418)
                      |+.|++++++... ......+.++|+.|+.  .|+.+++++|++.|++++.    .+..|.||||+|+..|+.+++++|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAAL--TGELEVVQQAVKEMNDPSQ----PNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHH--HTCHHHHHHHHHHSSCTTC----CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHH--cCCHHHHHHHHhcCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4677777766543 2234567889999999  8999999999999999887    8999999999999999999999999


Q ss_pred             hcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHH--HHcCCHHHHHHHHHcCCCCCcc
Q 048601          219 RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNA--AANGDRRMVEMLIEMGADPTIK  295 (418)
Q Consensus       219 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~~  295 (418)
                      +.+.  +++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..|+.+++++|+++|++++..
T Consensus        75 ~~ga--~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           75 TAGA--NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             HTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred             HCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence            8754  788999999999999999999999999999999999987 6999999999  9999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC--CCcCCCCCCcHHHHHHHcCCHHHHHH-H
Q 048601          296 DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS--TNYCDQYGLTPLHIAAIKGHKHVVLL-L  372 (418)
Q Consensus       296 ~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~-L  372 (418)
                      +..|.+|++.++..+..                        ++|++.|++  ++.+|..|+||||+|+.+|+.++|+. +
T Consensus       153 ~~~~~~~l~~~~~~~~~------------------------~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          153 NSGAVYALWDYSAEFGD------------------------ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             GGGEEEESSCBCCSSTT------------------------BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cCCchHHHHHHhhcccc------------------------ccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            99898888755443321                        347788888  67889999999999999999999965 4


Q ss_pred             HHcCCCC
Q 048601          373 IEFGADV  379 (418)
Q Consensus       373 l~~ga~~  379 (418)
                      ++.-..+
T Consensus       209 l~~~p~~  215 (229)
T 2vge_A          209 FGLFPRV  215 (229)
T ss_dssp             EESSCCC
T ss_pred             hhhCCCC
Confidence            4443333

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=6.7e-33  Score=256.26  Aligned_cols=243  Identities=14%  Similarity=0.098  Sum_probs=157.9

Q ss_pred             chHHHHHHHH-CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601          124 GPFLLRHAVS-NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL  202 (418)
Q Consensus       124 g~~~L~~A~~-~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L  202 (418)
                      +.+++++|.. .++.+++++|++++.+         +.|+|++|+.  .|+.+++++|++.|+.... ....+..|.|||
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~--~G~~e~v~~Ll~~ga~~~~-~~~~~~~~~tpL  132 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAI--TGCSSALDTLCLLLTSDEI-VKVIQAENYQAF  132 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHH--HCCHHHHHHHTTC--CCSS-CC--CHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHH--cCCHHHHHHHHHcCCcHHH-HHHhccCCCCHH
Confidence            3456666666 4677777777766532         3477888877  7788888888877762211 001334566788


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCccHHHHHH-HcCC
Q 048601          203 HVAAAFGRTEEISSLVRMKEYES-LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEA--KGKDGKTSLHNAA-ANGD  278 (418)
Q Consensus       203 ~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~-~~g~  278 (418)
                      |+|+..|+.++|++|++.+.... .+..+.+ .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+
T Consensus       133 ~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~  211 (376)
T 2aja_A          133 RLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH  211 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC
Confidence            88888888888888877653100 1122222 7788888888888888888888777665  6667778888888 8888


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCch--------HHHHHHcCCHHH------------HHH
Q 048601          279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA--------VLTAARRGELEG------------LES  338 (418)
Q Consensus       279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~--------~~~a~~~g~~~~------------~~~  338 (418)
                      .++|++|++.|+       .|.|||+.|+..|+.+++++|.++.+        +..|+..|+.++            ++.
T Consensus       212 ~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~  284 (376)
T 2aja_A          212 HNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN  284 (376)
T ss_dssp             HHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHH
Confidence            888888877653       26677877777777777777755432        333444555442            223


Q ss_pred             HHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc---------CCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          339 LLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF---------GADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       339 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      |+.++                  ..+..+.+++|++.         |+++    +.+.+||++|+..|+.++|++|+..
T Consensus       285 li~~~------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~  341 (376)
T 2aja_A          285 LIRRN------------------DEVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSI  341 (376)
T ss_dssp             HHHHC------------------CGGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHcc------------------hhhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcC
Confidence            33322                  11245667777764         4444    4566899999999999999999954

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2.7e-30  Score=225.83  Aligned_cols=158  Identities=23%  Similarity=0.280  Sum_probs=115.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601          230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK  309 (418)
Q Consensus       230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  309 (418)
                      +..|.||||.|++.++.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            356899999999999999999999999999864 7789999999999999999999999999999999999999999988


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC-c
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH-A  388 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-t  388 (418)
                      |+.+++++                     |+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.++..|. |
T Consensus        81 g~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t  139 (239)
T 1ycs_B           81 GHTEIVKF---------------------LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT  139 (239)
T ss_dssp             TCHHHHHH---------------------HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred             CCHHHHHH---------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence            88776665                     8899999999999999999999999999999999999999999998887 9


Q ss_pred             HhHHH--HhcCCcceeehhhhcc
Q 048601          389 PLHLA--VEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       389 ~l~~A--~~~g~~~~v~~Ll~~~  409 (418)
                      ||++|  +..|+.+++++|+...
T Consensus       140 ~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B          140 AADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             HHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             hHHHHHHhhhccHHHHHHHHHhh
Confidence            99999  8899999999999543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=3e-29  Score=204.11  Aligned_cols=145  Identities=22%  Similarity=0.299  Sum_probs=115.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC-HHHH
Q 048601          227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS-CFDV  305 (418)
Q Consensus       227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~  305 (418)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            456778999999999999999999999999999999999999999985 89999999999999999999999999 9999


Q ss_pred             HHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC
Q 048601          306 ARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNE  385 (418)
Q Consensus       306 A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~  385 (418)
                      |+..|+.+++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus        85 A~~~~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  143 (156)
T 1bi7_B           85 AAREGFLDTLVV---------------------LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA  143 (156)
T ss_dssp             HHHHTCHHHHHH---------------------HHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred             HHHCCCHHHHHH---------------------HHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence            988877776655                     88899999999999999999999999999999999999999999999


Q ss_pred             CCcHhHHH
Q 048601          386 GHAPLHLA  393 (418)
Q Consensus       386 g~t~l~~A  393 (418)
                      |.||.+-+
T Consensus       144 g~t~~~~~  151 (156)
T 1bi7_B          144 RIDAAEGP  151 (156)
T ss_dssp             --------
T ss_pred             cCcccccC
Confidence            99987743

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=9.9e-29  Score=196.16  Aligned_cols=133  Identities=25%  Similarity=0.402  Sum_probs=104.2

Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCCH
Q 048601          224 ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR-GRSC  302 (418)
Q Consensus       224 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~  302 (418)
                      .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |.||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            3567777788888888888888888888888888888888888888888888 8888888888888888877777 7888


Q ss_pred             HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       303 l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      ||+|+..|+.+++++                     |+++|++++.++..|.||||+|+..|+.+++++|+++|+|
T Consensus        82 L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVV---------------------LHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHH---------------------HHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHH---------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            777777666555544                     6777778887777788888888888888888888887765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=1.4e-29  Score=211.58  Aligned_cols=165  Identities=16%  Similarity=0.197  Sum_probs=118.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccCCCCccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRD-KEGRTPLHLAVNKTSI----GCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      .++|+.|+..|+.+.++.++...    .+..+ ..|.||||+|+..|+.    +++++|+++|++++.++..|+||||+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            46788888888888888777543    23344 5688888888887764    478888888888888888888888888


Q ss_pred             HHcCC------HHHHHHHHHcCCCCCccCCCCC-CHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCC
Q 048601          274 AANGD------RRMVEMLIEMGADPTIKDDRGR-SCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD-KGAS  345 (418)
Q Consensus       274 ~~~g~------~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~  345 (418)
                      +..|+      .+++++|+++|++++.+|..|. ||||+|+..+..+                .++.+++++|++ +|++
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~----------------~~~~~iv~~Ll~~~gad  146 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE----------------NEMIPLYKLIFSQSGLQ  146 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH----------------HHHHHHHHHHHTSTTCC
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh----------------hhHHHHHHHHHHhcCCC
Confidence            87776      5678888888888888887777 7887777644322                112345666777 7777


Q ss_pred             CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC
Q 048601          346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD  383 (418)
Q Consensus       346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d  383 (418)
                      ++.+|..|+||||+|+..|+.++|++|.++..+.+.++
T Consensus       147 ~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            77777777788888777777777777777654444443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=1.7e-29  Score=211.08  Aligned_cols=159  Identities=17%  Similarity=0.074  Sum_probs=142.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNAAANGDR----RMVEMLIEMGADPTIKDDRGRSCFDVAR  307 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  307 (418)
                      +.++|+.|++.|+.+.++.+++.+.  +..+ ..|.||||+|+.+|+.    +++++|+++|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4678999999999999999998775  4455 6799999999999985    5999999999999999999999999999


Q ss_pred             HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCC
Q 048601          308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGL-TPLHIAAIKG-----HKHVVLLLIE-FGADVE  380 (418)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~ga~~~  380 (418)
                      ..++.++.+.               .+++++|+++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|++++
T Consensus        84 ~~~~~~~~~~---------------~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~  148 (186)
T 3t8k_A           84 QGGGNDITGT---------------TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL  148 (186)
T ss_dssp             HHCTTCHHHH---------------HHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred             HcCCcchhhH---------------HHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence            9887655432               4778889999999999999999 9999999954     4679999999 999999


Q ss_pred             cCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          381 CQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       381 ~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      .+|..|+|||++|++.|+.++|++|...
T Consensus       149 ~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          149 IKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             CCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=8.2e-29  Score=196.62  Aligned_cols=131  Identities=31%  Similarity=0.394  Sum_probs=124.0

Q ss_pred             CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHH
Q 048601          256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG  335 (418)
Q Consensus       256 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~  335 (418)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++                  
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~------------------   62 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL------------------   62 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHH------------------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHH------------------
Confidence            46788999999999999999999999999999999999999999999999988 87776666                  


Q ss_pred             HHHHHhCCCCCCcCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          336 LESLLDKGASTNYCDQY-GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       336 ~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                         |+++|++++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++.|+.+++++|+++
T Consensus        63 ---Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           63 ---LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             ---HHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ---HHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence               88999999999999 99999999999999999999999999999999999999999999999999999943

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.5e-26  Score=180.81  Aligned_cols=126  Identities=50%  Similarity=0.754  Sum_probs=100.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601          232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH  311 (418)
Q Consensus       232 ~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  311 (418)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47788888888888888888888888888888888888888888888888888888888888887788888887777666


Q ss_pred             HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      .+++++                     |+++|++++.++..|.|||++|+..|+.+++++|+++|+|
T Consensus        81 ~~~~~~---------------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKL---------------------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHH---------------------HHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            655554                     6777888888888888888888888888888888888775

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.3e-26  Score=183.98  Aligned_cols=126  Identities=31%  Similarity=0.409  Sum_probs=77.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601          230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK  309 (418)
Q Consensus       230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  309 (418)
                      ...+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34456666666666666666666666666666666666666666666666666666666666666666666666665555


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                      |+.+++++                     |+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~---------------------Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEV---------------------LLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHH---------------------HHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            54444433                     55556666666666666666666666666666666554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=4.6e-27  Score=191.18  Aligned_cols=143  Identities=25%  Similarity=0.314  Sum_probs=112.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcc-HHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKT-SLHN  272 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~  272 (418)
                      .+..|.||||+|+..|+.+++++|++.+.  +++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGA--NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTC--CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            56778899999999999999999998654  77888999999999985 89999999999999999999999998 9999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601          273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY  352 (418)
Q Consensus       273 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~  352 (418)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++|++++.++..
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~  143 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY---------------------LRAAAGGTRGSNHA  143 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------------HSSCC---------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHH---------------------HHHcCCCCCccCcC
Confidence            999999999999999999999999999999999888777766655                     88999999999999


Q ss_pred             CCcHHHHH
Q 048601          353 GLTPLHIA  360 (418)
Q Consensus       353 g~t~L~~A  360 (418)
                      |.||.+-+
T Consensus       144 g~t~~~~~  151 (156)
T 1bi7_B          144 RIDAAEGP  151 (156)
T ss_dssp             --------
T ss_pred             cCcccccC
Confidence            99887743

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.7e-26  Score=183.19  Aligned_cols=124  Identities=35%  Similarity=0.557  Sum_probs=116.8

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhC
Q 048601          263 GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDK  342 (418)
Q Consensus       263 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~  342 (418)
                      ...+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |+++
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~   69 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV---------------------LLKN   69 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHT
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHc
Confidence            3567899999999999999999999999999999999999999998887776665                     8899


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       343 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                      |++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++
T Consensus        70 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999984

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=4.9e-27  Score=186.62  Aligned_cols=132  Identities=33%  Similarity=0.458  Sum_probs=101.2

Q ss_pred             CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHH
Q 048601          256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG  335 (418)
Q Consensus       256 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~  335 (418)
                      |+++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                  
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~------------------   61 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL------------------   61 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH------------------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHH------------------
Confidence            4555 567777788888888888888888888887777777778888877777666665554                  


Q ss_pred             HHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601          336 LESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       336 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~  409 (418)
                         |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|..++
T Consensus        62 ---Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           62 ---LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             ---HHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             ---HHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence               67778888888888888888888888888888888888888888888888888888888888888777443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=2.9e-26  Score=179.24  Aligned_cols=123  Identities=46%  Similarity=0.729  Sum_probs=116.3

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCC
Q 048601          265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGA  344 (418)
Q Consensus       265 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~  344 (418)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++                     |+++|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~---------------------Ll~~g~   59 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL---------------------LLEAGA   59 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHH---------------------HHHcCC
Confidence            48899999999999999999999999999999999999999988877776655                     889999


Q ss_pred             CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       345 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus        60 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999943

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=200.47  Aligned_cols=141  Identities=22%  Similarity=0.188  Sum_probs=121.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCH
Q 048601          232 EGRTPLHLAVNKTSIGCAKVLLESGADKEA------KGKDGKTSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSC  302 (418)
Q Consensus       232 ~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~  302 (418)
                      ...++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|+||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            345779999999999999999999999988      688999999999997   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC
Q 048601          303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ  382 (418)
Q Consensus       303 l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  382 (418)
                      ||+|+..|+.+++++                     |+++|++++.+|..|.||||+|+..|+.+++++|+++|++    
T Consensus       230 Lh~A~~~g~~~~v~~---------------------Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----  284 (301)
T 2b0o_E          230 LHYAALYNQPDCLKL---------------------LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----  284 (301)
T ss_dssp             HHHHHHTTCHHHHHH---------------------HHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----
Confidence            999998887776665                     8899999999999999999999999999999999999986    


Q ss_pred             CCCCCcHhHHHHhcCCc
Q 048601          383 DNEGHAPLHLAVEGGRV  399 (418)
Q Consensus       383 d~~g~t~l~~A~~~g~~  399 (418)
                        .|.||||+|++.|+-
T Consensus       285 --~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 --TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             --TTSSCCC--------
T ss_pred             --CCCChhHHHHhcCCc
Confidence              478999999998864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=8.6e-26  Score=179.41  Aligned_cols=129  Identities=29%  Similarity=0.443  Sum_probs=95.9

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601          228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR  307 (418)
Q Consensus       228 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  307 (418)
                      .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            45677778888888888888888888888777777777888888888888888888888888877777777788887777


Q ss_pred             HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 048601          308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA  377 (418)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  377 (418)
                      ..|+.+++++                     |+++|++++.+|..|.|||++|+..++.+++++|.+.+.
T Consensus        85 ~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           85 KNGHVDIVKL---------------------LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HcCCHHHHHH---------------------HHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            7666665554                     677777888888888888888877777777777766543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=4.2e-25  Score=171.88  Aligned_cols=116  Identities=30%  Similarity=0.348  Sum_probs=84.2

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC
Q 048601          264 KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG  343 (418)
Q Consensus       264 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g  343 (418)
                      ..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++                     |+++|
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g   63 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF---------------------LLLKG   63 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHH---------------------HHTTT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHH---------------------HHHcC
Confidence            456677777777777777777777777777777777777777766666555544                     66777


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcc
Q 048601          344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE  400 (418)
Q Consensus       344 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~  400 (418)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|...+..+
T Consensus        64 ~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           64 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            777777777888888888888888888888888888888888888888875444333

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=3e-25  Score=185.50  Aligned_cols=140  Identities=28%  Similarity=0.399  Sum_probs=118.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHH
Q 048601          195 TKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNA  273 (418)
Q Consensus       195 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A  273 (418)
                      +..|.||||.|+..|+.+++++|++ +  .+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            4567899999999999999999987 3  4778888899999999999999999999999999998887 7889999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601          274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG  353 (418)
Q Consensus       274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g  353 (418)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..++.                                      ..+
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------------------------------------~~~  159 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------------------------------------TPK  159 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------------------------------CCC
T ss_pred             HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------------------------------ccc
Confidence            999999999999999999998899999999988763211                                      236


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc
Q 048601          354 LTPLHIAAIKGHKHVVLLLIEF  375 (418)
Q Consensus       354 ~t~L~~A~~~g~~~~v~~Ll~~  375 (418)
                      .++|++|+..|+.+++++|.++
T Consensus       160 ~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          160 GNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHcCHHHHHHHHHHh
Confidence            7889999999999999888765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.3e-24  Score=181.60  Aligned_cols=137  Identities=28%  Similarity=0.322  Sum_probs=81.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHc
Q 048601          231 KEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVARDK  309 (418)
Q Consensus       231 ~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~  309 (418)
                      ..|.||||+|+..|+.+++++|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            345566666666666666666666 66666666666666666666666666666666666666555 5566666666555


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      |+.+++++                     |+++|++++.+|..|.||||+|+..++.                 ..+.++
T Consensus       121 ~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~  162 (183)
T 3deo_A          121 VRPEVVEA---------------------LVELGADIEVEDERGLTALELAREILKT-----------------TPKGNP  162 (183)
T ss_dssp             TCHHHHHH---------------------HHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSH
T ss_pred             CcHHHHHH---------------------HHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccH
Confidence            55444443                     5556666666666666666666553322                 223456


Q ss_pred             hHHHHhcCCcceeehhh
Q 048601          390 LHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       390 l~~A~~~g~~~~v~~Ll  406 (418)
                      |++|++.|+.+++++|.
T Consensus       163 l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          163 MQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHH
Confidence            66666666666666655

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6.7e-25  Score=191.99  Aligned_cols=142  Identities=27%  Similarity=0.388  Sum_probs=128.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHH
Q 048601          196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNAA  274 (418)
Q Consensus       196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~  274 (418)
                      ..|.||||+|+..|+.+++++|++ +  .+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            457899999999999999999997 3  4788999999999999999999999999999999999988 78999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC
Q 048601          275 ANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGL  354 (418)
Q Consensus       275 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~  354 (418)
                      ..|+.+++++|+++|++++.++..|.||||+|+..++                                      ...+.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~--------------------------------------~~~~~  161 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK--------------------------------------TTPKG  161 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------------------------------TCCCS
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------------------------------ccCCC
Confidence            9999999999999999999999999999999975211                                      13478


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          355 TPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       355 t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      |||++|+..|+.+++++|++++.+
T Consensus       162 ~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          162 NPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CHHHHHHHcChHHHHHHHHHhccc
Confidence            999999999999999999997544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=4.2e-25  Score=193.32  Aligned_cols=140  Identities=27%  Similarity=0.301  Sum_probs=128.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHH
Q 048601          230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVARD  308 (418)
Q Consensus       230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~  308 (418)
                      +..|.||||+|+..|+.+++++|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3568999999999999999999999 99999999999999999999999999999999999999988 789999999998


Q ss_pred             cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCc
Q 048601          309 KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA  388 (418)
Q Consensus       309 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t  388 (418)
                      .|+.+++++                     |+++|++++.++..|.||||+|+..++                 ...+.|
T Consensus       121 ~g~~~~v~~---------------------Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~  162 (244)
T 3ui2_A          121 YVRPEVVEA---------------------LVELGADIEVEDERGLTALELAREILK-----------------TTPKGN  162 (244)
T ss_dssp             TTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSS
T ss_pred             cCCHHHHHH---------------------HHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCC
Confidence            888777665                     899999999999999999999986322                 256789


Q ss_pred             HhHHHHhcCCcceeehhhhc
Q 048601          389 PLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       389 ~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      ||++|+..|+.+++++|+..
T Consensus       163 ~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          163 PMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHh
Confidence            99999999999999999864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=3.7e-25  Score=191.02  Aligned_cols=136  Identities=21%  Similarity=0.252  Sum_probs=91.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHH
Q 048601          230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARD  308 (418)
Q Consensus       230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~  308 (418)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            44567777777777777777777777777777777777777777777777777777777 77777777777777777776


Q ss_pred             cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Q 048601          309 KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG  386 (418)
Q Consensus       309 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  386 (418)
                      .|+.+++++                     |+++|++++.++..|.|||++|+..|+.++++.|++.|++.+.++..|
T Consensus       150 ~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          150 KGYADIVQL---------------------LLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HTCHHHHHH---------------------HHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             cCCHHHHHH---------------------HHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            666555544                     677777888788888888888888888888888888888776665544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=2.4e-24  Score=167.58  Aligned_cols=109  Identities=29%  Similarity=0.366  Sum_probs=54.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048601          196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA  275 (418)
Q Consensus       196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  275 (418)
                      ..|.||||+|+..|+.+++++|++.+.  +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGE--DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTC--CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCC--CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            344455555555555555555554332  344444555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601          276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVA  306 (418)
Q Consensus       276 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  306 (418)
                      .|+.+++++|+++|++++.++..|.||+++|
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            5555555555555555555555555555544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.7e-24  Score=186.83  Aligned_cols=125  Identities=23%  Similarity=0.270  Sum_probs=114.3

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhC
Q 048601          263 GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDK  342 (418)
Q Consensus       263 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~  342 (418)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++                     |+++
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~  128 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM---------------------LFTQ  128 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HTTS
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHH---------------------HHcC
Confidence            4678999999999999999999999999999999999999999998888777666                     7887


Q ss_pred             -CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          343 -GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       343 -g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                       |++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++.|+..
T Consensus       129 ~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence             999999999999999999999999999999999999999999999999999999999999999843

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=6.2e-24  Score=191.28  Aligned_cols=141  Identities=23%  Similarity=0.239  Sum_probs=119.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcccCCCCcc------CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCc
Q 048601          197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDC------RDKEGRTPLHLAVNK---TSIGCAKVLLESGADKEAKGKDGK  267 (418)
Q Consensus       197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~~~~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~  267 (418)
                      ...++|+.|+..|+.+.+++|++.+.  +++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~--d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQ--DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTC--CTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCC--cccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            34578999999999999999997665  5555      588999999999997   899999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCC
Q 048601          268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN  347 (418)
Q Consensus       268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~  347 (418)
                      ||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++                     |+++|++  
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~---------------------Ll~~ga~--  284 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL---------------------LEQAQAG--  284 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHHHHH--
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHhcCC--
Confidence            99999999999999999999999999999999999999999888887776                     6666654  


Q ss_pred             cCCCCCCcHHHHHHHcCCH
Q 048601          348 YCDQYGLTPLHIAAIKGHK  366 (418)
Q Consensus       348 ~~~~~g~t~L~~A~~~g~~  366 (418)
                          .|.||||+|+.+|+.
T Consensus       285 ----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 ----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ----TTSSCCC--------
T ss_pred             ----CCCChhHHHHhcCCc
Confidence                478999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=3.8e-23  Score=190.26  Aligned_cols=150  Identities=23%  Similarity=0.210  Sum_probs=117.6

Q ss_pred             cCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Q 048601          228 CRDKEGRTPLHLAVNK-TSIGCAKVLLESGADKEAKG--KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD  304 (418)
Q Consensus       228 ~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  304 (418)
                      .....+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3444567899999999 99999999999999999988  88999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCc
Q 048601          305 VARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA---DVEC  381 (418)
Q Consensus       305 ~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~  381 (418)
                      +|+..|+.+++++                     |+++|++++..|..|.||||+|+..|+.+++++|++.+.   +...
T Consensus       274 ~A~~~g~~~~v~~---------------------LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~  332 (368)
T 3jue_A          274 HATILGHTGLACL---------------------FLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ  332 (368)
T ss_dssp             HHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------
T ss_pred             HHHHcCcHHHHHH---------------------HHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            9998887776665                     899999999999999999999999999999999998763   3344


Q ss_pred             CCCCCCcHhHHHHhcCC
Q 048601          382 QDNEGHAPLHLAVEGGR  398 (418)
Q Consensus       382 ~d~~g~t~l~~A~~~g~  398 (418)
                      .+..+.|+++++.....
T Consensus       333 ~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          333 GQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             -----------------
T ss_pred             cCCCCCCHHHHHHHHHh
Confidence            56677888887766543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=9.7e-23  Score=181.43  Aligned_cols=211  Identities=17%  Similarity=0.122  Sum_probs=147.4

Q ss_pred             HHHHHHHHcCCCCccc-ccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 048601          175 DMVSLLLRAGLSIEID-ERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL  253 (418)
Q Consensus       175 ~~v~~Ll~~g~~~~~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  253 (418)
                      ++....-+.|..+..- ....|..+.++++.+...|+..+.+++...-........+. +....    .....-..+++.
T Consensus        42 ~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~-~s~~~----~~~~fI~aKYl~  116 (278)
T 1dcq_A           42 ECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNP-GSDMI----ARKDYITAKYME  116 (278)
T ss_dssp             HHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCT-TCCHH----HHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCC-CCCHH----HHHHHHHHHHHH
Confidence            3444444445544320 01145667789999999999877666543221110001111 11111    111111122332


Q ss_pred             Hc-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHHHHHc---CCHHHHHHHhcCch
Q 048601          254 ES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPT------IKDDRGRSCFDVARDK---GHIEVLEVLQRGEA  323 (418)
Q Consensus       254 ~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~---~~~~~~~~l~~~~~  323 (418)
                      .. ............++|+.|+..|+.+.++.+++.|++++      ..+..|+||||+|+..   |+.++         
T Consensus       117 ~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~---------  187 (278)
T 1dcq_A          117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI---------  187 (278)
T ss_dssp             CTTSCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHH---------
T ss_pred             hhcccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHH---------
Confidence            22 11112222234578999999999999999999999854      4578899999999987   55554         


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceee
Q 048601          324 VLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLL  403 (418)
Q Consensus       324 ~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~  403 (418)
                                  +++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++
T Consensus       188 ------------v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  255 (278)
T 1dcq_A          188 ------------VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE  255 (278)
T ss_dssp             ------------HHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ------------HHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHH
Confidence                        55599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 048601          404 FIWLKQWG  411 (418)
Q Consensus       404 ~Ll~~~~g  411 (418)
                      +|++...+
T Consensus       256 ~Ll~~ga~  263 (278)
T 1dcq_A          256 LLTQALSG  263 (278)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHcCCC
Confidence            99977665

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=3.1e-22  Score=178.13  Aligned_cols=126  Identities=23%  Similarity=0.241  Sum_probs=108.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHH
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADK------EAKGKDGKTSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSCF  303 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~l  303 (418)
                      ..++|+.|+..|+.+.++.+++.|+++      +..+..|.||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            346788888888888888888888874      44477889999999988   889999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601          304 DVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV  379 (418)
Q Consensus       304 ~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  379 (418)
                      |+|+..|+.+++++                     |+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       210 h~A~~~g~~~~v~~---------------------Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          210 HYCCLTDNAECLKL---------------------LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHH---------------------HHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99888877776665                     78899999999999999999999999999999999998853

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=5.4e-22  Score=145.97  Aligned_cols=92  Identities=49%  Similarity=0.734  Sum_probs=57.2

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601          266 GKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS  345 (418)
Q Consensus       266 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~  345 (418)
                      |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++                     |+++|++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~   60 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL---------------------LLEAGAD   60 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCC
Confidence            5566666666666666666666666666666666666666555555444433                     5566666


Q ss_pred             CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      ++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        61 ~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            666666666777777777777777777766654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=4.4e-22  Score=183.17  Aligned_cols=126  Identities=26%  Similarity=0.368  Sum_probs=116.8

Q ss_pred             CCCCccHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHH
Q 048601          263 GKDGKTSLHNAAAN-GDRRMVEMLIEMGADPTIKD--DRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESL  339 (418)
Q Consensus       263 ~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~L  339 (418)
                      ...+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++                     |
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~---------------------L  254 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF---------------------L  254 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHH---------------------H
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHH---------------------H
Confidence            34567899999999 99999999999999999988  889999999998887776665                     8


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601          340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ  409 (418)
Q Consensus       340 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~  409 (418)
                      +++|+++|..|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.+++++|+..+
T Consensus       255 L~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=4.1e-22  Score=152.91  Aligned_cols=107  Identities=38%  Similarity=0.551  Sum_probs=73.2

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh
Q 048601          262 KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD  341 (418)
Q Consensus       262 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~  341 (418)
                      +|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++                     |++
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~---------------------Ll~   63 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL---------------------LLA   63 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHH---------------------HTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH---------------------HHH
Confidence            45566666666666666666666666666666666666666666666555554443                     666


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601          342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP  389 (418)
Q Consensus       342 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  389 (418)
                      +|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.+|
T Consensus        64 ~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            667777777777778888887788888888888888887777777766

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=3.6e-21  Score=141.52  Aligned_cols=85  Identities=48%  Similarity=0.770  Sum_probs=45.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI  312 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  312 (418)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             HHHHH
Q 048601          313 EVLEV  317 (418)
Q Consensus       313 ~~~~~  317 (418)
                      +++++
T Consensus        82 ~~~~~   86 (93)
T 1n0q_A           82 EVVKL   86 (93)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=1.7e-21  Score=149.38  Aligned_cols=107  Identities=37%  Similarity=0.529  Sum_probs=55.2

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601          194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA  273 (418)
Q Consensus       194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  273 (418)
                      +|.+|.||||+|+..|+.+++++|++.+.  +++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGA--DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTC--CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            44455555555555555555555554332  3444555555555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCH
Q 048601          274 AANGDRRMVEMLIEMGADPTIKDDRGRSC  302 (418)
Q Consensus       274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  302 (418)
                      +..|+.+++++|+++|++++.++..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            55555555555555555555554444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=1.3e-18  Score=132.04  Aligned_cols=92  Identities=34%  Similarity=0.487  Sum_probs=78.0

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601          227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA  306 (418)
Q Consensus       227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  306 (418)
                      ...+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            44577888899999999999999999988888888888889999999999999999999998988888888889999999


Q ss_pred             HHcCCHHHHHHH
Q 048601          307 RDKGHIEVLEVL  318 (418)
Q Consensus       307 ~~~~~~~~~~~l  318 (418)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            888888888875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=3e-18  Score=129.97  Aligned_cols=90  Identities=32%  Similarity=0.514  Sum_probs=55.8

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh
Q 048601          262 KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD  341 (418)
Q Consensus       262 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~  341 (418)
                      .+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++                     |++
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~---------------------Ll~   78 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL---------------------LLE   78 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH---------------------HHH
Confidence            45566777777777777777777777766666666666666666555555444443                     555


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHH
Q 048601          342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLL  372 (418)
Q Consensus       342 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  372 (418)
                      +|++++.+|..|+||||+|+..|+.+++++|
T Consensus        79 ~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            6666666666666666666666666666654

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.55  E-value=3.2e-15  Score=117.90  Aligned_cols=113  Identities=22%  Similarity=0.351  Sum_probs=91.0

Q ss_pred             ccccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCC
Q 048601            2 ERLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTF   80 (418)
Q Consensus         2 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~   80 (418)
                      +++|.++|. +|.|.++.++++++.++|+|. ++.+||||++||+|.+|+|||+.|+|.|.++..+.++++++.+.    
T Consensus        16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~-s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~~----   90 (152)
T 1wic_A           16 GPLLHISPAEELYFGSIESGEKKTLIVLTNV-TKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLTV----   90 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBC-SSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSCC----
T ss_pred             CCeEEECCCCeEEEeCCCCceEEEEEEEEcC-CCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCcccC----
Confidence            689999998 899999999999999999999 56899999999999999999999999999999999999887542    


Q ss_pred             CCCCchHHHHHHhccC-----CccccccccccCCCCCccceeeeec
Q 048601           81 PRSPSDRFLIKATVFG-----SADSVNSLCVTLPDGSTQDVKFKIA  121 (418)
Q Consensus        81 ~~~~~~~~l~~a~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~  121 (418)
                        .+.+.|++.++...     +.+++..++.........+.+.+..
T Consensus        91 --~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~  134 (152)
T 1wic_A           91 --SAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCH  134 (152)
T ss_dssp             --CSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBC
T ss_pred             --CCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEE
Confidence              33578888887665     3345666665554433334444433

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=9.5e-15  Score=114.98  Aligned_cols=117  Identities=19%  Similarity=0.389  Sum_probs=92.5

Q ss_pred             Cccccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCC
Q 048601            1 MERLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPT   79 (418)
Q Consensus         1 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~   79 (418)
                      ++++|.++|. +|.|.+++++++++.++|+|. ++.++|||++||+|.+|+|+|+.|+|.|.++..+.+.+++....|. 
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~-s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p~-   88 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNP-SDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDPN-   88 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECC-SSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCTT-
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECC-CCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCcc-
Confidence            4789999996 999999999999999999999 5689999999999999999999999999999999999988654332 


Q ss_pred             CCCCCchHHHHHHhccC-CccccccccccCCCCCccceeeeec
Q 048601           80 FPRSPSDRFLIKATVFG-SADSVNSLCVTLPDGSTQDVKFKIA  121 (418)
Q Consensus        80 ~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~  121 (418)
                        ....+.|++.++... +..++..++.........+.+.+..
T Consensus        89 --~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~  129 (147)
T 2cri_A           89 --EKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCV  129 (147)
T ss_dssp             --CCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEE
T ss_pred             --ccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEE
Confidence              234578888877654 3445666666554443344444443

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.52  E-value=1.9e-14  Score=110.74  Aligned_cols=104  Identities=19%  Similarity=0.413  Sum_probs=85.9

Q ss_pred             ccccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCC
Q 048601            2 ERLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTF   80 (418)
Q Consensus         2 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~   80 (418)
                      +++|.++|. +|.|..++++++++.++|+|. ++.++|||++||+|.+|+|+|+.|+|.|.++..+.+.+++....|.  
T Consensus         8 ~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~-s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p~--   84 (128)
T 1z9l_A            8 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNP-SDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDPN--   84 (128)
T ss_dssp             CCCSEEESSSEEEEESCCSSCEEEEEEEECC-SSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCTT--
T ss_pred             CCeEEECCCCeEEEcCCCCceEEEEEEEECC-CCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCcc--
Confidence            579999996 999999999999999999999 5689999999999999999999999999999999999988754332  


Q ss_pred             CCCCchHHHHHHhccC-CccccccccccCC
Q 048601           81 PRSPSDRFLIKATVFG-SADSVNSLCVTLP  109 (418)
Q Consensus        81 ~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~  109 (418)
                       ....+.|++.++... +..++..++....
T Consensus        85 -~~~~dkF~V~s~~~~~~~~~~~~~w~~~~  113 (128)
T 1z9l_A           85 -EKSKHKFMVQTIFAPPNISDMEAVWKEAK  113 (128)
T ss_dssp             -CCCCCEEEEEEEECCTTCSCHHHHHHSCC
T ss_pred             -cccCCEEEEEEEECCCCcchHHHHhhcCC
Confidence             234578888877654 3345666665543

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.38  E-value=5.3e-13  Score=101.79  Aligned_cols=92  Identities=13%  Similarity=0.278  Sum_probs=80.0

Q ss_pred             cccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCC
Q 048601            3 RLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFP   81 (418)
Q Consensus         3 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~   81 (418)
                      ..|+++|. +|.|+.++..+.++.++|+|. ++.++|||++||+|++|+|+|+.|+|.|.++..+.+.+++....|+.  
T Consensus         7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~-s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~--   83 (126)
T 1msp_A            7 GDINTQPSQKIVFNAPYDDKHTYHIKITNA-GGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED--   83 (126)
T ss_dssp             CCEEEESSSCEEEESCCSSCCCEEEEEEEC-SSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC--
T ss_pred             CeEEEcCCCeEEEcCcCCcceEEEEEEECC-CCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc--
Confidence            57899996 899999999999999999999 66799999999999999999999999999999999999987654433  


Q ss_pred             CCCchHHHHHHhccCCc
Q 048601           82 RSPSDRFLIKATVFGSA   98 (418)
Q Consensus        82 ~~~~~~~l~~a~~~~~~   98 (418)
                       ...+.|++.++...+.
T Consensus        84 -~~kDKf~Vq~~~~p~~   99 (126)
T 1msp_A           84 -LNNDRITIEWTNTPDG   99 (126)
T ss_dssp             -CSSCEEEEEEEECCTT
T ss_pred             -cCCCEEEEEEEECCCC
Confidence             2257888888877543

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.32  E-value=1.5e-12  Score=95.83  Aligned_cols=94  Identities=14%  Similarity=0.266  Sum_probs=77.4

Q ss_pred             cccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCCCC
Q 048601            5 LAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSP   84 (418)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~~~   84 (418)
                      |.++|.+|.|.++.+   .+.++|+|. ++.++|||++||+|.+|+|||..|+|.|.++..+.++++++.        ..
T Consensus         3 L~i~P~~l~F~~~~~---~~~l~L~N~-t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~~--------~~   70 (109)
T 1row_A            3 LTADPPACTVPAAGV---SSTHKLVNG-GAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGA--------PK   70 (109)
T ss_dssp             CEEESSSEEEETTCE---EEEEEEEEC-SSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSCC--------CE
T ss_pred             EEEECCEeEEeCCCC---eEEEEEEcC-CCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCCC--------CC
Confidence            789999999998743   689999999 667999999999999999999999999999999999999852        12


Q ss_pred             chHHHHHHhccC-CccccccccccCCC
Q 048601           85 SDRFLIKATVFG-SADSVNSLCVTLPD  110 (418)
Q Consensus        85 ~~~~l~~a~~~~-~~~~~~~l~~~~~~  110 (418)
                      .+.|++.++... +..+...++....+
T Consensus        71 ~dKflvq~~~~~~~~~d~~~~fk~~~~   97 (109)
T 1row_A           71 EDKLVVHFASAPADATDAQAAFVAVAP   97 (109)
T ss_dssp             EEEEEEEEEECCTTCSCHHHHHTTCCC
T ss_pred             CCEEEEEEEECCCCCCCHHHHhhcCCC
Confidence            578888877764 44566777766443

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.24  E-value=8.3e-12  Score=92.10  Aligned_cols=95  Identities=19%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             cccccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCC
Q 048601            3 RLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPR   82 (418)
Q Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~   82 (418)
                      .++.++|.++.|.++.   .++.++|+|. ++.++|||++||+|.+|+|||..|+|.|.++..+.++++++.        
T Consensus         9 ~~~~~~p~~l~F~~~g---g~~~l~L~N~-t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~~--------   76 (116)
T 1m1s_A            9 SMINVDPPTGNYPATG---GNSTHNITSE-SDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPGP--------   76 (116)
T ss_dssp             CSEEEESSEEEECTTC---EEEEEEEEEC-SSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSCC--------
T ss_pred             eeeecCCCeEEEecCC---CEEEEEEECC-CCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCCC--------
Confidence            3678899999999874   4899999999 667999999999999999999999999999999999999872        


Q ss_pred             CCchHHHHHHhccC-CccccccccccCC
Q 048601           83 SPSDRFLIKATVFG-SADSVNSLCVTLP  109 (418)
Q Consensus        83 ~~~~~~l~~a~~~~-~~~~~~~l~~~~~  109 (418)
                      ...+.|++.++... +..+...++....
T Consensus        77 ~k~DKflVq~~~~~~d~~d~~~~fk~~~  104 (116)
T 1m1s_A           77 PKEDKIVIQYAEVPAEETDPMAPFKAGA  104 (116)
T ss_dssp             SCEEEEEEEEEEECTTCCCTTHHHHTTC
T ss_pred             CCCCEEEEEEEECCCCCCCHHHHHhcCC
Confidence            12478888877765 4556677776544

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=94.39  E-value=0.2  Score=38.41  Aligned_cols=66  Identities=12%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             cccccceEEEe-ecCCCeeEEEEEEecCCCCCceEEEEeecC------CCceeecCCCccccCCCceeEEEEec
Q 048601            5 LAVSEQEVLIN-FTLNSKCRANVRLISLCATSPVAFKVQTSS------PHKFLVNPPSGLVQPLAQTTLQIILK   71 (418)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~af~~~tt~------~~k~~v~~~~gii~p~~~~~i~~~l~   71 (418)
                      +.+++.++-|. ..+++..+.+++|.|. ...|..|++....      +.-+.+.|..|.|.|.++..+.+.+.
T Consensus        27 i~v~~~~ldFG~v~~~~~~~~~l~I~Nt-g~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           27 LELSRREFVFENVKFRQLQKEKFQISNN-GQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             EEESCCEEEEEEECBTCCEEEEEEEEEC-SSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             eEeeeeeEEeeeceeeeeeeeEEEEEcC-CccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            56777888887 6778888999999999 7789999998642      23466999999999999998888654

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.78  E-value=0.38  Score=35.09  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             ccccccceEEEee-cCCCeeEEEEEEecCCCCCceEEEEeecCC---CceeecCCCccccCCCceeEEEEecCCC
Q 048601            4 LLAVSEQEVLINF-TLNSKCRANVRLISLCATSPVAFKVQTSSP---HKFLVNPPSGLVQPLAQTTLQIILKPQS   74 (418)
Q Consensus         4 l~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~af~~~tt~~---~k~~v~~~~gii~p~~~~~i~~~l~~~~   74 (418)
                      .+++++.++.|.. ..++.....++++|. ...|..|+......   ..|.+.|..|.|.|..+..+++.+.+..
T Consensus         9 ~i~~~~~~ldFG~v~~g~~~~~~~~l~N~-g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~   82 (112)
T 2e6j_A            9 KIHFNFELLDIGKVFTGSAHCYEAILYNK-GSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSII   82 (112)
T ss_dssp             SEEESCSEEEEEEEESSCCEEEEEEEEEC-CSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCC
T ss_pred             EEEECcccEecEeEEECCEEEEEEEEEEC-CcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCC
Confidence            3566777777754 456777789999999 66799999865321   3588999999999999999999888753

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.46  E-value=0.81  Score=33.96  Aligned_cols=63  Identities=14%  Similarity=0.287  Sum_probs=50.7

Q ss_pred             cceEEEee-cCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCC
Q 048601            9 EQEVLINF-TLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQS   74 (418)
Q Consensus         9 ~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~   74 (418)
                      |..+.|.. ..+.+....+.++|. .+.+..|+....+  -|.+.|..|.+.|..+..+.+...+..
T Consensus        29 p~~l~fg~~~v~~~~~~~~~l~N~-g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F~P~~   92 (122)
T 2ys4_A           29 PDKLNFSTCPVKYSTQKILLVRNI-GNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEFEPQS   92 (122)
T ss_dssp             CSEECCCSEESSSCEEEEEEEECC-SSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEECCSS
T ss_pred             CCeeecCCeecCCeEEEEEEEEEC-CCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEEEcCC
Confidence            34454433 456788899999998 6679999988754  699999999999999999999887764

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=88.79  E-value=1.4  Score=39.87  Aligned_cols=68  Identities=12%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             cccccceEEEe-ecCCCeeEEEEEEecCCCCCceEEEEeecCCC------ceeecCCCccccCCCceeEEEEecCC
Q 048601            5 LAVSEQEVLIN-FTLNSKCRANVRLISLCATSPVAFKVQTSSPH------KFLVNPPSGLVQPLAQTTLQIILKPQ   73 (418)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~------k~~v~~~~gii~p~~~~~i~~~l~~~   73 (418)
                      +.++++++.|. ..+++..+.++++.|+ ...|..|++......      =+.+.|..|.+.|.++..+.+.+.-.
T Consensus        30 v~v~~~~idFg~v~~~~~~~~~l~i~N~-g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~  104 (366)
T 3qis_A           30 LELSRREFVFENVKFRQLQKEKFQISNN-GQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS  104 (366)
T ss_dssp             EEESCSEEEEEEECBTCCEEEEEEEEEC-SSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred             EEEecCeEEeeeeeeCCeEEEEEEEEec-CCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence            56778888884 7889999999999999 777999999876311      15599999999999999988877644

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=81.73  E-value=18  Score=28.65  Aligned_cols=131  Identities=16%  Similarity=0.196  Sum_probs=90.5

Q ss_pred             hHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHH
Q 048601          125 PFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHV  204 (418)
Q Consensus       125 ~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~  204 (418)
                      .+=+..|+..|+++....+.+...      +......+-..|..  .|+.++++.-..+--++.           ..+.+
T Consensus         9 ~~rF~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~--~gn~~lAe~cy~~~~D~~-----------~L~~L   69 (177)
T 3mkq_B            9 HIRFDLALEYGNLDAALDEAKKLN------DSITWERLIQEALA--QGNASLAEMIYQTQHSFD-----------KLSFL   69 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHH--TTCHHHHHHHHHHTTCHH-----------HHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHH--cCChHHHHHHHHHhCCHH-----------HHHHH
Confidence            455788999999999887765321      23456666677777  899999999988764433           35666


Q ss_pred             HHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHH
Q 048601          205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSI-GCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVE  283 (418)
Q Consensus       205 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  283 (418)
                      ....|+.+-++.+.+...      ...+...+.+.+...|.+ +++++|.+.|--        .-+...|..+|..++.+
T Consensus        70 y~~tg~~e~L~kla~iA~------~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~  135 (177)
T 3mkq_B           70 YLVTGDVNKLSKMQNIAQ------TREDFGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAAS  135 (177)
T ss_dssp             HHHHTCHHHHHHHHHHHH------HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHH------HCccHHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHH
Confidence            677888888887754322      223345667777777874 578888775431        12455677889999998


Q ss_pred             HHHHc
Q 048601          284 MLIEM  288 (418)
Q Consensus       284 ~Ll~~  288 (418)
                      -+++.
T Consensus       136 ~~~~~  140 (177)
T 3mkq_B          136 AFLEQ  140 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	418
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-38
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-34
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-31
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-31
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-28
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-27
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-25
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-24
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-24
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-23
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-21
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-18
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-15
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-13
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-09
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	8e-13
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	2e-11
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-11
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	2e-09
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	9e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	7e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 2e-38
 Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 14/229 (6%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEA 261
           LHVA+  G    + +L++     S +  + +  TPLH+A        AK LL++ A   A
Sbjct: 4   LHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 262 KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
           K KD +T LH AA  G   MV++L+E  A+P +    G +   +A  +GH+E +  L   
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 322 EAVLT------------AARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
           EA               AA+ G++   E LL++ A  N   + GLTPLH+A    +  +V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC 418
            LL+  G         G+ PLH+A +  +VE    +             
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 230

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-35
 Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 18/241 (7%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
               +  LLL              K+G + LHVA      + +  L  +    S      
Sbjct: 143 GKVRVAELLLERDAHPNA----AGKNGLTPLHVAVHHNNLDIVKLL--LPRGGSPHSPAW 196

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
            G TPLH+A  +  +  A+ LL+ G    A+   G T LH AA  G   MV +L+   A+
Sbjct: 197 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 256

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR------------GELEGLESL 339
             + +  G +   +   +GH+ V +VL +   ++ A  R            G ++ ++ L
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 316

Query: 340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
           L   A  N   + G +PLH AA +GH  +V LL++ GA      ++G  PL +A   G +
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 376

Query: 400 E 400
            
Sbjct: 377 S 377

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 9e-35
 Identities = 85/328 (25%), Positives = 134/328 (40%), Gaps = 55/328 (16%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAA--NSEDMVSLLLRAGL 185
           L  A   G    VK++L+R      G S   +         +AA     ++   LL+   
Sbjct: 4   LHVASFMGHLPIVKNLLQR------GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 186 SIEIDERVKTKDGWSELHVAAAFGRTEEISSLV--------------------------- 218
            +      K KD  + LH AA  G T  +  L+                           
Sbjct: 58  KVNA----KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 113

Query: 219 ----RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAA 274
                +++  S  C  K+G TPLH+A     +  A++LLE  A   A GK+G T LH A 
Sbjct: 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 173

Query: 275 ANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE------------ 322
            + +  +V++L+  G  P      G +   +A  +  +EV   L +              
Sbjct: 174 HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT 233

Query: 323 AVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
            +  AA+ G  E +  LL K A+ N  ++ GLTPLH+ A +GH  V  +LI+ G  V+  
Sbjct: 234 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 293

Query: 383 DNEGHAPLHLAVEGGRVEPLLFIWLKQW 410
              G+ PLH+A   G ++ + F+   Q 
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFLLQHQA 321

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 3e-34
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 12/184 (6%)

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTI 294
           TPLH+A     +   K LL+ GA         +T LH AA  G   + + L++  A    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 295 KDDRGRSCFDVARDKGHIEVLEVL------------QRGEAVLTAARRGELEGLESLLDK 342
           K    ++    A   GH  ++++L                 +  AAR G +E + +LL+K
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPL 402
            AS     + G TPLH+AA  G   V  LL+E  A        G  PLH+AV    ++ +
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 403 LFIW 406
             + 
Sbjct: 182 KLLL 185

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 9e-29
 Identities = 70/280 (25%), Positives = 108/280 (38%), Gaps = 29/280 (10%)

Query: 124 GPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAA--NSEDMVSLLL 181
           G   L  A   G     + +L+R            A         +A   N+ D+V LLL
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLER------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 182 RAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV 241
             G S          +G++ LH+AA   + E   SL++       +    +G TPLHLA 
Sbjct: 186 PRGGSPHS----PAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAA 239

Query: 242 NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS 301
            +       +LL   A+     K G T LH  A  G   + ++LI+ G         G +
Sbjct: 240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

Query: 302 CFDVARDKGHIEVLEVLQRGE------------AVLTAARRGELEGLESLLDKGASTNYC 349
              VA   G+I++++ L + +             +  AA++G  + +  LL  GAS N  
Sbjct: 300 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 359

Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEF---GADVECQDNEG 386
              G TPL IA   G+  V  +L       + V   D   
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 399

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 8e-22
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
           +  K G + LH+ A  G       L+  K    +D   + G TPLH+A +  +I   K L
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLI--KHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 316

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312
           L+  AD  AK K G + LH AA  G   +V +L++ GA P      G +   +A+  G+I
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 376

Query: 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLT 355
            V +V                  L+ + D+ +     D++ ++
Sbjct: 377 SVTDV------------------LKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 9e-14
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           LTPLH+A+  GH  +V  L++ GA     + +   PLH+A   G  E
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 47

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 4e-31
 Identities = 76/308 (24%), Positives = 120/308 (38%), Gaps = 46/308 (14%)

Query: 89  LIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQK 148
           LIKA      D V  L   L  G+  +V F+    G   L +AV     + V+ +L+   
Sbjct: 9   LIKAVQNEDVDLVQQL---LEGGA--NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 149 MILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAF 208
                      +        LAA +  +  L  +  LS   D       G++    AA +
Sbjct: 64  DP------VLRKKNGATPFLLAAIAGSVKLL--KLFLSKGADVNECDFYGFTAFMEAAVY 115

Query: 209 GRTEEISSLV--------RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL-ESGADK 259
           G+ + +  L         R K  E  +   K G T L  A  K  +   K+LL E GAD 
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

Query: 260 EAKGKDGKTSLHNAAANGDRRMVE----MLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315
            A    G+ +L +A  + D   VE    +L++ GAD  ++ +RG++   +A +K H+ ++
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

Query: 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
           + L                    L  +    N  D  G T L +A     K +  LL + 
Sbjct: 236 QRL--------------------LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 376 GADVECQD 383
           GA  +C D
Sbjct: 276 GASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 8e-31
 Identities = 64/272 (23%), Positives = 97/272 (35%), Gaps = 63/272 (23%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC--- 228
              D+V  LL  G ++      + + GW+ LH A    R + +  L+R      L     
Sbjct: 16  EDVDLVQQLLEGGANVNF---QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72

Query: 229 ----------------------------RDKEGRTPLHLAVNKTSIGCAKVLLESGAD-- 258
                                        D  G T    A     +   K L + GA+  
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 259 --------KEAKGKDGKTSLHNAAANGDRRMVEMLI-EMGADPTIKDDRGRSCFDVARDK 309
                   +E   K G T+L +AA  G   ++++L+ EMGAD    D+ GR+    A   
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
                +E +                    LLD GA  N   + G TPL +A  K H  +V
Sbjct: 193 SDDSDVEAIT-----------------HLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

Query: 370 -LLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
             LL +   ++   D++G   L LAVE    +
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 1e-19
 Identities = 55/180 (30%), Positives = 77/180 (42%), Gaps = 24/180 (13%)

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAK-GKDGKTSLHNAAANGDRRMVEMLIEMGA 290
           E    L  AV    +   + LLE GA+   +  + G T LHNA       +VE+L+  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 291 DPTIKDDRGRSCFDVA------------RDKGHIEVLEVLQRGEAVLTAARRGELEGLES 338
           DP ++   G + F +A              KG            A + AA  G+++ L+ 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 339 LLDKGASTNYCDQY----------GLTPLHIAAIKGHKHVV-LLLIEFGADVECQDNEGH 387
           L  +GA+ N   +           G T L  AA KGH  V+ +LL E GADV   DN G 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 7e-10
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 318 LQRGEAVLTAARRGELEGLESLLDKGASTNYCD-QYGLTPLHIAAIKGHKHVVLLLIEFG 376
           ++    ++ A +  +++ ++ LL+ GA+ N+ + + G TPLH A     + +V LL+  G
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 377 ADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC 418
           AD   +   G  P  LA   G V+ L     K          
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY 104

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  111 bits (279), Expect = 3e-28
 Identities = 48/319 (15%), Positives = 81/319 (25%), Gaps = 49/319 (15%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSI 187
           LR        N  +  +   ++ L  LS  EA  ++   T    N E +  LL       
Sbjct: 16  LRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGT---KNMEQVRQLLCLYYAHY 72

Query: 188 EIDERV-------KTKDGWSELHVAAAFGRTEEISSLVRMKEY-ESLDCRDKEGRTPLHL 239
             + +        K         VAA  G +  + +L  +    E +     E      L
Sbjct: 73  NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 132

Query: 240 AVNKTSIGCAKVLLESGADKEAKGKD--GKTSLHNAAANGDRRMVEMLIEMGADP---TI 294
           A     +     L E    +           +   AA NG   ++  L E+        I
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 295 KDDRGRSCFDVARDKGHIEVLEVL-----QRGEAVLTAARRGELEGLESLLDKGASTNYC 349
           + +   +    A  +GH  V+  L         A +     GE      +          
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 350 -----------------------DQYGLTPLHIAAIKGHKHVVLLLIEFGAD-----VEC 381
                                    Y L  L     +     +  L+             
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 382 QDNEGHAPLHLAVEGGRVE 400
              + +  L LA+  G   
Sbjct: 313 IPGDANELLRLALRLGNQG 331

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 94.2 bits (233), Expect = 6e-22
 Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 40/238 (16%)

Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
           D + LLL +   ++    V   + +    +AA  G    ++ L  +   E +     E  
Sbjct: 107 DTLCLLLTSDEIVK----VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 162

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKE---AKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
               LA     +     L E    +     + ++       A   G   ++  L++    
Sbjct: 163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 222

Query: 292 PTIKDDR----------------------GRSCFDVARDKGHIEVLE--VLQRGEAVLT- 326
               +                            F ++   G  +++      +G  +L  
Sbjct: 223 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 282

Query: 327 ---AARRGELEGLESLLDKGA-----STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
                    L+ +  LL          T          L +A   G++    LL+   
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.8 bits (175), Expect = 2e-14
 Identities = 24/155 (15%), Positives = 38/155 (24%), Gaps = 15/155 (9%)

Query: 252 LLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311
           +  +              +         ++ ++L    A       +  S       K  
Sbjct: 32  ISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE 91

Query: 312 IEVLEVLQRGEAVLTAARRG---ELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHV 368
           +              AA  G    L+ L  LL                  +AA  GH HV
Sbjct: 92  V----------ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 141

Query: 369 VLLLIEFGADVECQD--NEGHAPLHLAVEGGRVEP 401
           +  L E            E +    LA E G +  
Sbjct: 142 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 9/77 (11%), Positives = 18/77 (23%), Gaps = 11/77 (14%)

Query: 337 ESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI-----------EFGADVECQDNE 385
             +     S           + +   K  + V  LL            +  +D   +  +
Sbjct: 30  HFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIK 89

Query: 386 GHAPLHLAVEGGRVEPL 402
                 +A   G    L
Sbjct: 90  SEVICFVAAITGCSSAL 106

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 2e-27
 Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 27/225 (12%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
             E++   +L              +D  + LH A + G TE +  L+++      + +D 
Sbjct: 15  KLEELKESILADK----SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV--NDKDD 68

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
            G +PLH+A +       K LL  GA   A  ++G T LH AA+     +  ML+E GA+
Sbjct: 69  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 128

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351
           P  KD    +    A  KG+++++ +L   +A                          D 
Sbjct: 129 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI---------------------QDT 167

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
            G TPLH+A  +       LL+  GA +  ++ E   PL +A  G
Sbjct: 168 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 8e-19
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 176 MVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRT 235
           +V  LL  G  +        ++G + LH AA+  R E    L+      + D +D    T
Sbjct: 85  IVKALLGKGAQVNA----VNQNGCTPLHYAASKNRHEIAVMLLEGGA--NPDAKDHYEAT 138

Query: 236 PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIK 295
            +H A  K ++    +LL   A    +  +G T LH A         ++L+  GA   I+
Sbjct: 139 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 198

Query: 296 DDRGRSCFDVARDKGHIEVLEVLQRG 321
           +   ++   VA+  G   +L+ +  G
Sbjct: 199 NKEEKTPLQVAK-GGLGLILKRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 1e-18
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 22/199 (11%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEA 261
           +   A  G+ EE+   +   +       D++ RT LH A +       + LL+ G     
Sbjct: 7   VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 262 KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
           K   G + LH AA+ G   +V+ L+  GA     +  G +    A  K   E+  +L   
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML--- 122

Query: 322 EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
                             L+ GA+ +  D Y  T +H AA KG+  ++ +L+ + A    
Sbjct: 123 ------------------LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 164

Query: 382 QDNEGHAPLHLAVEGGRVE 400
           QD EG+ PLHLA +  RVE
Sbjct: 165 QDTEGNTPLHLACDEERVE 183

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 13/160 (8%)

Query: 268 TSLHNAAANGD-RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLT 326
             + N A +G    + E ++   +  T  D   R+    A   GH E++E L +    + 
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 327 AARRGELEGLES------------LLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
                    L              LL KGA  N  +Q G TPLH AA K    + ++L+E
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 375 FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV 414
            GA+ + +D+     +H A   G ++ +  +   +  T +
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 164

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 1/63 (1%)

Query: 357 LHIAAIKGH-KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
           +   A  G  + +   ++   +     D +    LH A   G  E + F+          
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 416 HSC 418
              
Sbjct: 67  DDA 69

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (250), Expect = 5e-25
 Identities = 48/244 (19%), Positives = 73/244 (29%), Gaps = 46/244 (18%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMK-EYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
            T+DG + LH+A        +  L+     +E LD ++  G+T LHLA         + L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 253 LESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRG--RSCFDVARDKG 310
             +GA      + G T+LH A          +L++                  D   D  
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 311 HIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG----------------- 353
           H           A + +    E E      D        +  G                 
Sbjct: 125 H---------APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 354 -----------------LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
                             TPLH+A       V+ LL++ GAD   +   G  PL  A+  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 397 GRVE 400
               
Sbjct: 236 PNPI 239

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.4 bits (207), Expect = 4e-19
 Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 12/193 (6%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKE---AKGKDGKTSLHNAAANGDRRMVEMLI 286
            ++G T LHLAV          LL   A  E    +   G+T+LH AA  G+   VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346
             GA   + +  G +   +A          VL      L        +  ++ L    S 
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVL------LQPRPSHPRDASDTYLT--QSQ 117

Query: 347 NYCDQYGLTPLHIAAIK-GHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
           +        P  + +             ++   +E ++ +GH PLH+AV     E +  +
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 406 WLKQWGTMVSHSC 418
                        
Sbjct: 178 RDAGADLNKPEPT 190

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 1e-13
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD---VECQDNEGHAPLHLAVEGGRVEPLL 403
            Y  + G T LH+A I  H+  +  L+ F A    ++ Q++ G   LHLA   G    + 
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 404 FIWLKQWGTMVSHSC 418
            ++    G +V+   
Sbjct: 63  KLYAAGAGVLVAERG 77

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.7 bits (247), Expect = 3e-24
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD----RRMVEML 285
           D+ G TPLH   +  ++   K L++ G+++      G++ L  A  + +         +L
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 286 IEMGADPTIKDDRGRSCFDVA------------------------RDKGHIEVLEVLQRG 321
             +     ++D   R+                               K +  +       
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 322 EAVLTAARRGELEGLESLLDK----GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
           E+          + +   LD         N  D  G T L+IAA  G+  +V  L+++GA
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

Query: 378 DVECQDNEGHAPLHLAV 394
           D    +  G  P+    
Sbjct: 284 DPFIANKSGLRPVDFGA 300

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 98.3 bits (243), Expect = 7e-24
 Identities = 61/274 (22%), Positives = 102/274 (37%), Gaps = 39/274 (14%)

Query: 160 ESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVR 219
           ES  ++ TE AA S  +   + R  ++I     +  +   + LH  A+    E+   L+ 
Sbjct: 1   ESPIKLHTE-AAGSYAITEPITRESVNI-----IDPRHNRTVLHWIASNSSAEKSEDLIV 54

Query: 220 MKEYESL------DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273
            +  E +      +  D +  TPL LAV          L+++GAD     K  +++LH A
Sbjct: 55  HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 114

Query: 274 AANGDRRMVEMLIEMGADP---TIKDDRGRSCFDVARDKGHI------------------ 312
           AAN D  M+  ++            D  G +   +                         
Sbjct: 115 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 174

Query: 313 ----EVLEVLQRGEAVLTAARRGELEGL--ESLLDKGASTNYCDQYGLTPLHIAAIKGHK 366
                      +G   L  A +     +    + +KG++ +  D+ G TP+ +AA +G  
Sbjct: 175 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 234

Query: 367 HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            VV+ LI+ GA VE  D   H    LA       
Sbjct: 235 EVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 268

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.1 bits (201), Expect = 3e-18
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVL-LESGADKEAKGKDGKTSLHNAAANGDRRMVEML 285
           D    +GRT LH A   +++   K L  E G++K+ + +DGKT +  AA  G   +V  L
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
           I+ GA     D    +   +A+   H  ++++  R
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.8 bits (164), Expect = 2e-13
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 22/120 (18%)

Query: 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIE-MGADPTIKDDRGRSCFDVARDKGHIEV 314
            A K+++   G+T+LH AA   +  +V+ L+   G++   +D+ G++   +A  +G IEV
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
           +  L                     + +GAS    D    T   +A    H ++V +   
Sbjct: 237 VMYL---------------------IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 8e-11
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 9/102 (8%)

Query: 325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL--------IEFG 376
           L     G     E +  +  +     ++  T LH  A          L        I  G
Sbjct: 6   LHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 64

Query: 377 ADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC 418
           ADV   D + + PL LAV   R   + ++        + +  
Sbjct: 65  ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS 106

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 15/154 (9%)

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
           +    LH   A G   + E +     +  I     R+           E  E L   EA 
Sbjct: 1   ESPIKLH-TEAAGSYAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEA- 57

Query: 325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
                       +  +  GA  N  D    TPL +A +   + +V  L++ GAD    + 
Sbjct: 58  ------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK 105

Query: 385 EGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC 418
              + LH A        ++++             
Sbjct: 106 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 139

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
           + +DG + + +AA  GR E +  L++     S++  D    T   LA          +  
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDIFD 274

Query: 254 E 254
            
Sbjct: 275 R 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK 221
              ++V  L++ G S+E           +   +A A      +    R +
Sbjct: 232 GRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNIVDIFDRCR 277

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (238), Expect = 1e-23
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 19/223 (8%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYE--SLDCRDKEGRTPLHLAVNKTSIGCAKVLLE 254
           DG + LH+A   G    +  LV + +     LD  +   +TPLHLAV  T     ++L+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 255 SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR----GRSCFDVARDKG 310
           +GA   A  + G+T+ H A  +     +  L++  A  T+  +     G +   VA +  
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 311 HIEVLEVLQRGEAVLT-------------AARRGELEGLESLLDKGASTNYCDQYGLTPL 357
             E +++L    A +              A     L  ++ LL  GA+ N     G + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 358 HIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           H A+ +G   +V  L+  GAD   ++     PL +A     ++
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 6e-15
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK 231
            S   +  LL +     +D   +  DG + LHVA      E +  L+     +      K
Sbjct: 84  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG-ADIDAVDIK 142

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
            GR+PL  AV   S+   ++LL+ GA+  A+   G ++LH+A+  G   +V  L+  GAD
Sbjct: 143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 202

Query: 292 PTIKDDRGRSCFDVARDKGHIEVL 315
            ++K+    +   VAR +  I++L
Sbjct: 203 SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 2e-14
 Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 21/220 (9%)

Query: 169 LAA--NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
           +A    +   V  L+        +  +      + LH+A        +  LV        
Sbjct: 9   IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-- 66

Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK----DGKTSLHNAAANGDRRMV 282
              D+ G+T  HLA    S  C + LL+S A      +    DG T+LH A     +  V
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 283 EMLIEMGADPTIKDDRGRSCF-------------DVARDKGHIEVLEVLQRGEAVLTAAR 329
           ++L+E GAD    D +                   +    G     ++     A+ +A+ 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 330 RGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
           RG L  + +L+  GA ++  + +  TPL +A  +    ++
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 38/154 (24%), Gaps = 50/154 (32%)

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
           DG T LH A   G+   V  L+ +                                    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNL------------------------------------ 25

Query: 325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
                             G   +  +    TPLH+A I     VV LL+  GA     D 
Sbjct: 26  --------------FQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR 71

Query: 385 EGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC 418
            G    HLA E      L  +        +    
Sbjct: 72  HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 105

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 90.5 bits (223), Expect = 5e-21
 Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 12/232 (5%)

Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
           ++   + V  LL  G  I         DG + LH A      + +     ++   +++  
Sbjct: 49  SSGDTEEVLRLLERGADINY----ANVDGLTALHQACIDDNVDMVK--FLVENGANINQP 102

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI-EM 288
           D EG  PLH A +   +  A+ L+  GA   A   +G T L  A       +++  +   
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 289 GADPTIKDDRGRSCFDVA----RDKGHIEVLEVLQRGEAVL-TAARRGELEGLESLLDKG 343
           G D                    + GHI  +   + G   L  AA +G  E L+ L+   
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
              N  D  G TPLH AA  G +    +L+E   D+E  +  G     +A E
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.4 bits (194), Expect = 3e-17
 Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 43/229 (18%)

Query: 211 TEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSL 270
           T+    +V+ K+ +       +       A +         LLE GAD      DG T+L
Sbjct: 22  TDLEPPVVKRKKTK----VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTAL 77

Query: 271 HNAAANGD---------------------------------RRMVEMLIEMGADPTIKDD 297
           H A  + +                                   + E LI  GA     + 
Sbjct: 78  HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137

Query: 298 RGRSCFDVARDKGHIEVLEVLQRGEAVL------TAARRGELEGLESLLDKGASTNYCDQ 351
            G +  D+A ++   E+L+     + V          R    +  + L     +     +
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
            G T LH+AA KG+  V+ LLI+   DV  +D +G  PLH A   G+ E
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.4 bits (194), Expect = 3e-17
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 220 MKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR 279
              + +     K G T LH+A  K      K+L+++  D   K  DG T LH AA  G  
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL 325
               +L+E   D    +  G++ FDVA +   +  LE LQ+ + +L
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 238 HLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD 297
                       + L     +     K G T+LH AAA G   ++++LI+   D  IKD 
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 298 RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL 357
            G +    A   G  E   +L                     ++        ++ G T  
Sbjct: 231 DGWTPLHAAAHWGKEEACRIL---------------------VENLCDMEAVNKVGQTAF 269

Query: 358 HIAAIKGHKHVVLLL 372
            +A      ++  L 
Sbjct: 270 DVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 15/64 (23%), Positives = 23/64 (35%)

Query: 355 TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV 414
                A   G    VL L+E GAD+   + +G   LH A     V+ + F+         
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

Query: 415 SHSC 418
             + 
Sbjct: 102 PDNE 105

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (198), Expect = 3e-18
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 26/216 (12%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRM--KEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLE 254
           DG S LH+A           ++R    +   L+ ++   +TPLHLAV       A+ LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 255 SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD------VARD 308
           +G D E +   G T LH A   G    V +L +    P +      + ++      +A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 309 KGHIEVLEVLQRGEAVLTAARRGE-------------LEGLESLLDKGASTNYCDQYGLT 355
            G++ ++E+L    A + A                   + +  LL  GA  N     G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 356 PLHIAAIKGHKHVVLLLIEFGAD-----VECQDNEG 386
           P  +   +    +   L +   +      E +D E 
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 5e-17
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 23/192 (11%)

Query: 232 EGRTPLHLAVNKTSIGCA----KVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287
           +G + LHLA+            + +    A    +    +T LH A       + E L+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 288 MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE------------------AVLTAAR 329
            G DP ++D RG +   +A ++G +  + VL +                     +  A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 330 RGELEGLESLLDKGASTNYCDQY-GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA 388
            G L  +E L+  GA  N  +   G T LH+A    +  +V LL++ GADV     +G++
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 389 PLHLAVEGGRVE 400
           P  L        
Sbjct: 181 PYQLTWGRPSTR 192

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 2e-13
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 3/112 (2%)

Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG 256
           +G + LH+A+  G    +  L+     +        GRT LHLAV+  +     +LL+ G
Sbjct: 110 NGHTCLHLASIHGYLGIVE-LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 168

Query: 257 ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP--TIKDDRGRSCFDVA 306
           AD       G +           R+ + L ++  +    + +      +D  
Sbjct: 169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 9e-11
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 353 GLTPLHIAAIKGHKHVVLLLIEF----GADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408
           G + LH+A I   K + + +I       A +  Q+N    PLHLAV   + E    +   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 409 QWGTMVSHSC 418
                +    
Sbjct: 62  GCDPELRDFR 71

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 80.6 bits (197), Expect = 3e-18
 Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 25/228 (10%)

Query: 173 SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE 232
           +  ++S LL  G  +        K G + LH+AA F R +    L+      +       
Sbjct: 1   TAQVISDLLAQGAELNA---TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 57

Query: 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADP 292
                 +A +   +    +      +  A+  DG T L  AA      MVE LI   AD 
Sbjct: 58  TPLHAAVAADAMGVFQILL-RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI 116

Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352
              D+ G++    A    + E + +L                         A+ +  D  
Sbjct: 117 NAADNSGKTALHWAAAVNNTEAVNILLM---------------------HHANRDAQDDK 155

Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
             TPL +AA +G       L++  A+ E  D+    P  +A E    +
Sbjct: 156 DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHD 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.1 bits (162), Expect = 1e-13
 Identities = 25/99 (25%), Positives = 46/99 (46%)

Query: 220 MKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR 279
           +     ++  D  G+T LH A    +     +LL   A+++A+    +T L  AA  G  
Sbjct: 110 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 169

Query: 280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
              + L++  A+  I D   R   DVA ++ H +++ +L
Sbjct: 170 EASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 334 EGLESLLDKGASTNY-CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
           + +  LL +GA  N   D+ G T LH+AA          L++ GAD   QDN G  PLH 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 393 AVEGGRVEPLLFIWLKQWGTMVSHSC 418
           AV    +     +   +   + +   
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMH 88

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.5 bits (181), Expect = 6e-16
 Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 20/221 (9%)

Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEA 261
           LH A       ++  L+  K    L  +D++GR PLH +V+  +      LL    +   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 262 KGKDGKTSLHNAAANGDRRMVEMLIEMGA-----DPTIKDDRGRSCFDVARDKGHIEVLE 316
                 +             +E++  +       D     ++G +C  +A  K   EV +
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 317 VL-----------QRGEAVLTAARRGELEGLESLLDK--GASTNYCDQYGLTPLHIAAIK 363
            L           +  +  L  A       L  LL     ++ N+ D+ G TPL  A  +
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 364 GHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLL 403
           GH    +LL+E +GA+ +  DN+G     +A+     +  L
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 235 TPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG---- 289
            PLH A  +      + LL S  +    K +DG+  LH + +     +   L+       
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 290 -------------ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGL 336
                               +         R           Q    +  A  +   E  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 337 ESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG-ADVECQDNEGHAPLHLAVE 395
           + L++ GAS    D++   PLH AA  G   ++ LL   G + V  QD +G  PL  A+ 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 396 GGRVE 400
            G  +
Sbjct: 182 EGHGD 186

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 4e-12
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 355 TPLHIAAIKGHKHVV-LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTM 413
            PLH A ++     V  LL    + +  +D +G  PLH +V     E   F+  K     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 414 VSHSC 418
           +    
Sbjct: 62  LDDYP 66

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 6e-12
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
           K K     LH AA    + ++  L+      +++ +DK+G TPL  A+ +     A +L+
Sbjct: 134 KDKFNQIPLHRAA-SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 192

Query: 254 ES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           E  GA+ +     G  +   A    + ++ +  +    D
Sbjct: 193 EKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADK-EAKGKDGKTSLHNAAANGDRRMVEMLI 286
            +DK  + PLH A +  S+   ++L   G      + K G T L +A A G      +L+
Sbjct: 133 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 192

Query: 287 E-MGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
           E  GA+  + D++G    DVA ++   +    L   
Sbjct: 193 EKYGAEYDLVDNKGAKAEDVALNEQVKKFF--LNNV 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 8e-08
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 1/93 (1%)

Query: 327 AARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNE 385
           A    E   ++ LL  K +     DQ G  PLH +       +   L+    +V   D  
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 386 GHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC 418
             +          V  L  +       +     
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN 99

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.0 bits (170), Expect = 5e-15
 Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 33/159 (20%)

Query: 232 EGRTPLHL---AVNKTSIGCAKVLLESGADKEAK------GKDGKTSLHNAAANGDR--- 279
           +    LH    AV    I         G D   K       +  +T+LH A  + DR   
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESL 339
            +V+ L++   +   +  +G +         + E L++L R                   
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR------------------- 102

Query: 340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
               AS    ++ G TPL IA    H+H   LL +  + 
Sbjct: 103 --GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 9e-09
 Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 42/120 (35%)

Query: 323 AVLTAARRGELEGLESLLDKGASTNYC------DQYGLTPLHIAAI---KGHKHVVLLLI 373
           ++  A +  ++ GL      G             +   T LH+A     +   H+V  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 374 EFGADVECQ---------------------------------DNEGHAPLHLAVEGGRVE 400
           +   +++ Q                                 +  G  PL +A       
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 11/137 (8%)

Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAES-----LYRVATELAANSEDMVSLLLR 182
           L  AV   D   +         +   +  A         L+     +   S  +V  L++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 183 AGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN 242
              +++       + G     +             + ++   S++  ++ G TPL +A  
Sbjct: 70  NSGNLDK------QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 243 KTSIGCAKVLLESGADK 259
                C ++L ++ + +
Sbjct: 124 LKHEHCEELLTQALSGR 140

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.9 bits (156), Expect = 4e-13
 Identities = 43/148 (29%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
           D    L  AA  G    V +L+  GA  T  D  G S   +A   GH    EVL R    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 325 LTAARRGELEGLESL------------LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
             A  + +   L               L  GA  N  D   +T LH A    H+ VV LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 373 IEFGADVECQDNEGHAPLHLAVEGGRVE 400
           I++GADV  Q         ++++ G  +
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNED 147

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (129), Expect = 1e-09
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
            A  +D V +L+  G     D    +    +  +   +            ++   S D R
Sbjct: 11  RAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEV-------LLRAGVSRDAR 63

Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289
            K  RTPLH+A ++      +VLL+ GAD  AK     T+LH A  +  + +VE+LI+ G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
           AD   +    ++ FD++ D G+ ++ E+LQ
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (127), Expect = 2e-09
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 13/153 (8%)

Query: 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
           +    L  A         ++L+ +GA        G + LH AA  G     E+L+  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA------------VLTAARRGELEGLESL 339
              +    R+   +A  +GH  ++EVL +  A            +  A      E +E L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
           +  GA  +   ++  T   I+   G++ +  +L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.6 bits (152), Expect = 8e-13
 Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 7/121 (5%)

Query: 4   LLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQ 63
           +      +++ N   + K   ++++I+      + + ++T++  +  V+PP G++ P   
Sbjct: 7   IQTQPGTKIVFNAPYDDKHTYHIKVINSS-ARRIGYGIKTTNMKRLGVDPPCGVLDPKEA 65

Query: 64  TTLQIILKPQSQIPPTFPRSPSDRFLIKATVF--GSADSVNSLCVTLPDGSTQDVKFKIA 121
             L +     +           DR  ++ T    G+A           DG  +     I 
Sbjct: 66  VLLAVSCDAFAFGQEDTNN---DRITVEWTNTPDGAAKQFRREWFQG-DGMVRRKNLPIE 121

Query: 122 F 122
           +
Sbjct: 122 Y 122

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (144), Expect = 2e-11
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 4   LLAVSEQEVLI-NFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLA 62
           LL +S  E L      + + +  + L ++   + VAFKV+T++P K+ V P +    P A
Sbjct: 18  LLHISPAEELYFGSIESGEKKTLIVLTNVT-KNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 63  QTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFGSADSVNSLCVT-----LPDGSTQDVK 117
              + +              S  DRFLI A     +       ++     +P     + +
Sbjct: 77  SIDIIVSPHGG------LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHR 130

Query: 118 FKIAFVGP 125
            +   V  
Sbjct: 131 LRCHTVES 138

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 2e-11
 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 264 KDGKTSLHNAAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARDKGHIEVLEV----- 317
           + G   L  AAA GD + V  L+      P   +  G++   V         LE+     
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 318 ------LQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLL 371
                       V  AAR G L+ L+ L++ GA  N  D  G  P+H+A  +GH  VV  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 372 LIEFGADVECQDNEGHAPLHLAVEGGRVE 400
           L    +D+  +D  G  PL LA++ G  +
Sbjct: 120 LAAE-SDLHRRDARGLTPLELALQRGAQD 147

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-09
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 233 GRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD 291
               L  A  +  +   + LL       +A  + GKT+L           +E+L +  + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV----------LTAARRGELEGLESLLD 341
                       D AR      +  +++ G  V          +  A +     + S L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
             +  +  D  GLTPL +A  +G + +V +L  
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
               G   +H+     +    + +  +     L  RD  G TPL LA+ + +     +L 
Sbjct: 97  PDGTGALPIHL---AVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

Query: 254 E 254
            
Sbjct: 154 G 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 355 TPLHIAAIKGHKHVV-LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTM 413
             L  AA +G    V  LL       +  +  G   L + + G     L  +       +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 414 VSHSC 418
              S 
Sbjct: 64  QDTSG 68

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-10
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTI 294
             L  A  +  +     LL++  +  A+   G+T+       G+  +   L+  GA+P +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA-LQVMKLGNPEIARRLLLRGANPDL 61

Query: 295 KDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYC----- 349
           KD  G +    A   G ++ L+ L   +A +          L     +G           
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 350 --------DQYGLTPLHIAAIKGHKHVVLLLIEFG 376
                   +  G T   +A + G   VV L+   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 2e-09
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
             L +AAA GD   +  L++   +   ++  GR+   V +         +L RG      
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 328 ARRGELE-----------GLESLLDKGASTNYCDQYGLTPLHIAAIKGHK-HVVLLLIEF 375
            R G               L++LL+  A  N  D  G  PLH+AA +GH   V  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
            ++V  ++++G     LA   GR E
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNE 147

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 5e-08
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
           +G   L  AA +G    +  L++   +V  Q+  G 
Sbjct: 1   WG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 8e-05
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 220 MKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG 256
                ++  R+ +G T   LA          ++  +G
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 321 GEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353
           G  + +AA RG+LE L SLL    + N  + +G
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG 34

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 34 TSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKAT 93
             + FK+++S+ +++ + P  G V P     + I     +           D+ ++   
Sbjct: 26 AEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGAP--------KEDKLVVHFA 77

Query: 94 V 94
           
Sbjct: 78 S 78

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.6 bits (121), Expect = 9e-09
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 4  LLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQ 63
          ++ V         T  +   +   + S    S +AFKV++S+   + V P  G V    +
Sbjct: 3  MINVDPPTGNYPATGGN---STHNITSES-DSRLAFKVKSSNNEHYRVRPVYGFVDAKGK 58

Query: 64 TTLQIILKPQSQIPPTFPRSPSDRFLIKATV 94
          + L I   P             D+ +I+   
Sbjct: 59 SKLDINRLPGPP--------KEDKIVIQYAE 81

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
           L +++  G+  +V+ +I    DP++ +D G +    A   GH E+++ L +    + AA 
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 330 RGELEG------------LESLLDKGA---STNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
                              + L++ GA   +  Y D            +G+      L  
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Query: 375 FGADV 379
               +
Sbjct: 125 VQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
           L  L  ++++G   +V  +I    D    ++EG 
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGI 35

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-07
 Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 266 GKTSLHNAAANGDRRMVEMLIEMGADP------------TIKDDRGRSCFDVARDKGHIE 313
               L  AAA G    V  L+E GA+P             +     R    +        
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI 373
             +       V  AAR G L+ L  L   GA  +  D +G  P+ +A   GH+ V   L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 374 E 374
            
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.002
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 355 TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
             L  AA +G    V  L+E GA+    ++ G 
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGR 37

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (84), Expect = 7e-04
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL-- 325
                A  NGD   V+  +  G D     + GR     A D G +E+LE L    A +  
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 326 ----------TAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
                     +A   G +  ++ LL KGA        GLT L       ++ +  LL
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD---NQAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	418
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.31
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.26
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.07
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.02

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-44  Score=338.04  Aligned_cols=306  Identities=25%  Similarity=0.360  Sum_probs=222.6

Q ss_pred             HHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHH
Q 048601           88 FLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVAT  167 (418)
Q Consensus        88 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~  167 (418)
                      .|..|+..|+.+.|+.++..-.     +++. .+..|.||||+|+..|+.++|++|+++|++++  .....+.+++++|+
T Consensus         3 pL~~Aa~~g~~~~v~~Ll~~g~-----~in~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~--~~~~~g~t~L~~A~   74 (408)
T d1n11a_           3 PLHVASFMGHLPIVKNLLQRGA-----SPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--AKAKDDQTPLHCAA   74 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC-----CSCC-SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTSCCHHHHHH
T ss_pred             hHHHHHHCcCHHHHHHHHHCCC-----CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC--CCCCCCCCHHHHHH
Confidence            4667777777777777775422     1222 24557777777777777777777777776652  34456677777777


Q ss_pred             HHhhCCHHHHHHHHHcCCCCcccc-----------------------------cccCCCCchHHHHHHHcCCHHHHHHHH
Q 048601          168 ELAANSEDMVSLLLRAGLSIEIDE-----------------------------RVKTKDGWSELHVAAAFGRTEEISSLV  218 (418)
Q Consensus       168 ~~~~~~~~~v~~Ll~~g~~~~~~~-----------------------------~~~~~~~~t~L~~A~~~g~~~~v~~Ll  218 (418)
                      .  .|+.+++++|+..+.+.....                             ...+..+.++++.|+..++.+++++|+
T Consensus        75 ~--~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll  152 (408)
T d1n11a_          75 R--IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL  152 (408)
T ss_dssp             H--HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             H--cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHH
Confidence            7  677777777777765542211                             113455667777777777777777777


Q ss_pred             hcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCc----
Q 048601          219 RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTI----  294 (418)
Q Consensus       219 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----  294 (418)
                      +.+.  +++..+..|.+||++|+..|+.+++++|+++|++++..+..|.||+|+++.....++...|+..+.....    
T Consensus       153 ~~~~--~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (408)
T d1n11a_         153 ERDA--HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  230 (408)
T ss_dssp             HTTC--CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HcCC--CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCC
Confidence            6554  5566677777777777777777777777777777777777777777777777776666666554433333    


Q ss_pred             -----------------------------cCCCCCCHHHHHHHcCCHHHHHHHhc------------CchHHHHHHcCCH
Q 048601          295 -----------------------------KDDRGRSCFDVARDKGHIEVLEVLQR------------GEAVLTAARRGEL  333 (418)
Q Consensus       295 -----------------------------~~~~g~t~l~~A~~~~~~~~~~~l~~------------~~~~~~a~~~g~~  333 (418)
                                                   .+..|.||++.|+..++.+++++|++            ..+++.++..++.
T Consensus       231 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcc
Confidence                                         33444555555555555566665542            2257778888888


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehh
Q 048601          334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI  405 (418)
Q Consensus       334 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~L  405 (418)
                      ++++++++.|+++|.+|..|+||||+|+++|+.++|++|+++|||++.+|..|+|||++|+++|+.++|++|
T Consensus       311 ~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            888888888899999999999999999999999999999999999999999999999999999999999877

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=279.87  Aligned_cols=209  Identities=29%  Similarity=0.385  Sum_probs=184.5

Q ss_pred             hCCHHHHHHHH-HcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 048601          171 ANSEDMVSLLL-RAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCA  249 (418)
Q Consensus       171 ~~~~~~v~~Ll-~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v  249 (418)
                      +|+.+.++.++ +.+..++.    +|..|+||||+|+..|+.+++++|+....  .....+..+.++++.++..++.+++
T Consensus        13 ~G~~~~v~~~l~~~~~~~~~----~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~   86 (223)
T d1uoha_          13 SGKLEELKESILADKSLATR----TDQDSRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGRDEIV   86 (223)
T ss_dssp             TTCHHHHHHHHHHCGGGGGC----CCTTSCCHHHHHHHHTCHHHHHHHHHHTC--CSCCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             hCCHHHHHHHHHhCCCcCcC----cCCCCCCHHHHHHHhhhhccccccccccc--ccccccccccccccccccccccchh
Confidence            45555553333 23344444    88999999999999999999999998765  4556677889999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHH
Q 048601          250 KVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR  329 (418)
Q Consensus       250 ~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~  329 (418)
                      ++|+++|++++..+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++            
T Consensus        87 ~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~------------  154 (223)
T d1uoha_          87 KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI------------  154 (223)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH------------
T ss_pred             HHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhh------------
Confidence            99999999999999999999999999999999999999999999999999999999988887776655            


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          330 RGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       330 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                               |.+.|.+++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+| ++|+.+++++|++
T Consensus       155 ---------L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         155 ---------LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             ---------HHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             ---------hccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence                     7889999999999999999999999999999999999999999999999999998 5799999999984

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-38  Score=280.34  Aligned_cols=265  Identities=26%  Similarity=0.291  Sum_probs=232.3

Q ss_pred             cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601          123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL  202 (418)
Q Consensus       123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L  202 (418)
                      .+.|+|++|++.|++++|++|+++|++++.. ....+.|||++|+.  .|+.+++++|++.+.....    .+..+.+|.
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~-~~~~g~tpL~~A~~--~~~~eiv~~L~~~~~~~~~----~~~~~~~~~   76 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQ--MSREDIVELLLRHGADPVL----RKKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTCCCHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCCCHHHHHHH--cCCHHHhhhhccccccccc----cccccchhh
Confidence            4789999999999999999999999887432 34578999999999  8999999999999998877    778889999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCccHHHH
Q 048601          203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK----------GKDGKTSLHN  272 (418)
Q Consensus       203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~~  272 (418)
                      +.|+..+..+...++++...  .....+..+.++++.|+..++...++.++....+++..          ...|.||||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          77 LLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             HHHhhcCCccccchhhhhcc--cccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence            99999999999999997654  34456788999999999999999999999987776543          3468999999


Q ss_pred             HHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 048601          273 AAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ  351 (418)
Q Consensus       273 A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~  351 (418)
                      |+.+|+.+++++|+++ |++++..+..|.+++..+...+..                 .+..+++++|+++|++++.++.
T Consensus       155 A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~~Li~~ga~~n~~~~  217 (285)
T d1wdya_         155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-----------------SDVEAITHLLLDHGADVNVRGE  217 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT-----------------TTHHHHHHHHHHTTCCSSCCCT
T ss_pred             HHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc-----------------hHHHHHHHHHHHCCCCCCccCC
Confidence            9999999999999975 899999999999988876554322                 2234567889999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          352 YGLTPLHIAAIKGHKHVVLLLIEF-GADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       352 ~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      .|.||||+|+..|+.++|++|+++ |++++.+|..|.||||+|+++|+.++|++|+  +.|+++|
T Consensus       218 ~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll--~~GAd~n  280 (285)
T d1wdya_         218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC--KRGASTD  280 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH--HHSSCSC
T ss_pred             CCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH--HCCCCCC
Confidence            999999999999999999999985 9999999999999999999999999999999  7777765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-38  Score=294.90  Aligned_cols=280  Identities=28%  Similarity=0.412  Sum_probs=249.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHH
Q 048601          126 FLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVA  205 (418)
Q Consensus       126 ~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A  205 (418)
                      ||||.||..|++++|++|+++|+++  +..+..+.||||+|+.  .|+.+++++|+++|++++.    .+..|.||||+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i--n~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~gadi~~----~~~~g~t~L~~A   73 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAAR--AGHTEVAKYLLQNKAKVNA----KAKDDQTPLHCA   73 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHH--HTCHHHHHHHHHHTCCSSC----CCTTSCCHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHH--cCCHHHHHHHHHCcCCCCC----CCCCCCCHHHHH
Confidence            8999999999999999999999876  4467789999999999  8999999999999999988    999999999999


Q ss_pred             HHcCCHHHHHHHHhcccCC-------------------------------CCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 048601          206 AAFGRTEEISSLVRMKEYE-------------------------------SLDCRDKEGRTPLHLAVNKTSIGCAKVLLE  254 (418)
Q Consensus       206 ~~~g~~~~v~~Ll~~~~~~-------------------------------~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  254 (418)
                      +..|+.+++++|+......                               ..+..+..+.++++.|+..++.+++++|++
T Consensus        74 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~  153 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  153 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999765421                               133456788999999999999999999999


Q ss_pred             cCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH----------------
Q 048601          255 SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL----------------  318 (418)
Q Consensus       255 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l----------------  318 (418)
                      +|++++..+.+|.+||++|+..|+.+++++|+++|++++..+..|.||++.+......+....+                
T Consensus       154 ~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t  233 (408)
T d1n11a_         154 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT  233 (408)
T ss_dssp             TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             cCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCC
Confidence            9999999999999999999999999999999999999998888877776666665555555554                


Q ss_pred             -----------------hc------------CchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHH
Q 048601          319 -----------------QR------------GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV  369 (418)
Q Consensus       319 -----------------~~------------~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  369 (418)
                                       ..            ..+++.|+..++.+++++|+++|++++..+..+.||||.|+..++.+++
T Consensus       234 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         234 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceee
Confidence                             22            2247889999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       370 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      ++++++|++++.+|..|+||||+|+++|+.++|++|+  +.|++++
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll--~~GAd~n  357 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL--KNGASPN  357 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH--HTTCCSC
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHH--HCCCCCC
Confidence            9999999999999999999999999999999999999  5577765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-38  Score=275.51  Aligned_cols=231  Identities=23%  Similarity=0.249  Sum_probs=134.8

Q ss_pred             hhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcH
Q 048601          157 AEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTP  236 (418)
Q Consensus       157 ~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~  236 (418)
                      .+|.||||+|+.  .|+.+++++|+++|+++.. .+.++..|.||||+|+..|+.+++++|++.+.  +++.+|..|.||
T Consensus         7 ~~G~t~Lh~A~~--~~~~~~v~~Ll~~~a~~~~-i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga--~i~~~d~~g~tp   81 (255)
T d1oy3d_           7 EDGDTALHLAVI--HQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEKLYAAGA--GVLVAERGGHTA   81 (255)
T ss_dssp             TTCCCHHHHHHH--TTCHHHHHHHHHHHTTSGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSSCCCTTSCCH
T ss_pred             cCCCCHHHHHHH--cCCHHHHHHHHHcCCCccc-ccCcCCCCCCccchHHhhcccccccccccccc--cccccccccchh
Confidence            445555555555  5555555555555544221 11144455555555555555555555554432  444555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCC----------CCccHHHHHHHc----CCHHHHHHHHHcCCCCCccCCCCCCH
Q 048601          237 LHLAVNKTSIGCAKVLLESGADKEAKGK----------DGKTSLHNAAAN----GDRRMVEMLIEMGADPTIKDDRGRSC  302 (418)
Q Consensus       237 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~~----g~~~~v~~Ll~~g~~~~~~~~~g~t~  302 (418)
                      ||+|+..++.+++++|++.+........          .+.+....+...    ............+.+++.++..|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            5555555555555555544332111000          000000000000    00011111111233444555556666


Q ss_pred             HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 048601          303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNY-CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC  381 (418)
Q Consensus       303 l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  381 (418)
                      ||+|+..++                     .+++++|++++++.+. .+..|.||||+|+..|+.++|++|+++|++++.
T Consensus       162 Lh~A~~~~~---------------------~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~  220 (255)
T d1oy3d_         162 LHVAVIHKD---------------------AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA  220 (255)
T ss_dssp             HHHHHHTTC---------------------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccccc---------------------cccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCC
Confidence            666555555                     5555568999988886 457899999999999999999999999999999


Q ss_pred             CCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601          382 QDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS  415 (418)
Q Consensus       382 ~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~  415 (418)
                      +|..|+|||++|+++|+.+++++|+  +.|++-+
T Consensus       221 ~d~~g~t~L~~A~~~~~~~i~~~Ll--~~Ga~~~  252 (255)
T d1oy3d_         221 RMYGGRTPLGSALLRPNPILARLLR--AHGAPEP  252 (255)
T ss_dssp             CCTTSCCHHHHHHTSSCHHHHHHHH--HTTCCCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHH--HcCCCCC
Confidence            9999999999999999999999999  5677644

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-37  Score=263.77  Aligned_cols=220  Identities=28%  Similarity=0.456  Sum_probs=201.1

Q ss_pred             chHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHH
Q 048601          124 GPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELH  203 (418)
Q Consensus       124 g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~  203 (418)
                      +.++|+.++..|+++.|+.+++..+... ...+..|.||||+|+.  .|+.+++++|++.+.....    .+..+.++++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~-~~~D~~G~TpLh~Aa~--~g~~e~~~~l~~~~~~~~~----~~~~~~~~~~   75 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACS--AGHTEIVEFLLQLGVPVND----KDDAGWSPLH   75 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHH--HTCHHHHHHHHHHTCCSCC----CCTTCCCHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcC-cCcCCCCCCHHHHHHH--hhhhccccccccccccccc----cccccccccc
Confidence            4678999999999999999887665443 3356788999999999  8999999999999988877    7788899999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHH
Q 048601          204 VAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVE  283 (418)
Q Consensus       204 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  283 (418)
                      .|+..|+.+++++|++.+.  +++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++
T Consensus        76 ~~~~~~~~~i~~~Ll~~~~--d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~  153 (223)
T d1uoha_          76 IAASAGRDEIVKALLGKGA--QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH  153 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccchhHHHhccCc--eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhh
Confidence            9999999999999998665  78899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 048601          284 MLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIK  363 (418)
Q Consensus       284 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  363 (418)
                      +|++.|.+++.+|.+|+||||.|+..|+.+++++                     |+++|++++.+|.+|+||||+| ..
T Consensus       154 ~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~---------------------LL~~Gad~~~~d~~g~tpl~~A-~~  211 (223)
T d1uoha_         154 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL---------------------LVSQGASIYIENKEEKTPLQVA-KG  211 (223)
T ss_dssp             HHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCSCCCCTTSCCHHHHC-CT
T ss_pred             hhccccceeeeccCCCCceeccccccCcHHHHHH---------------------HHHCCCCCCCCCCCCCCHHHHH-HC
Confidence            9999999999999999999999998887776665                     8899999999999999999998 47


Q ss_pred             CCHHHHHHHHH
Q 048601          364 GHKHVVLLLIE  374 (418)
Q Consensus       364 g~~~~v~~Ll~  374 (418)
                      |+.+++++|++
T Consensus       212 ~~~~i~~~Ll~  222 (223)
T d1uoha_         212 GLGLILKRMVE  222 (223)
T ss_dssp             THHHHHHHHHC
T ss_pred             CCHHHHhcccC
Confidence            99999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-37  Score=269.78  Aligned_cols=231  Identities=23%  Similarity=0.207  Sum_probs=181.8

Q ss_pred             cccchHHHHHHHHCCCHHHHHHHHhcchhhh-hcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601          121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMIL-AGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW  199 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  199 (418)
                      +..|.||||+||.+|+.+++++|++++++.. ....+..+.|||++|+.  .|+.+++++|+++|++++.    .+.+|.
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~--~g~~~iv~~Ll~~ga~i~~----~d~~g~   79 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI--LGEASTVEKLYAAGAGVLV----AERGGH   79 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHH--HTCHHHHHHHHHTTCCSSC----CCTTSC
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHh--hcccccccccccccccccc----cccccc
Confidence            4579999999999999999999999886643 23445678899999999  8999999999999999998    999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCC--------CCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCc
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDK--------EGRTPLHLAVNKTS----IGCAKVLLESGADKEAKGKDGK  267 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--------~~~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~  267 (418)
                      ||||+|+..|+.+++++|++.......+..+.        ...+....+.....    ..........+.+++.++..|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            99999999999999999997654222111111        11111111111111    1122222234667888999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC
Q 048601          268 TSLHNAAANGDRRMVEMLIEMGADPTI-KDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST  346 (418)
Q Consensus       268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~  346 (418)
                      ||||+|+..|+.+++++|++++++.+. .+..|.||||+|+..|+.+++++                     |+++|+++
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~---------------------Ll~~gadi  218 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL---------------------LLKAGADP  218 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCT
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHH---------------------HHHCCCCC
Confidence            999999999999999999999999885 46789999999988887776655                     88999999


Q ss_pred             CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       347 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      +.+|..|+||||+|+.+|+.+++++|+++||+
T Consensus       219 n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         219 TARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999997

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.1e-37  Score=275.19  Aligned_cols=241  Identities=25%  Similarity=0.290  Sum_probs=188.5

Q ss_pred             hhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcc------cCCCCccCCCCCC
Q 048601          161 SLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK------EYESLDCRDKEGR  234 (418)
Q Consensus       161 ~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~~~~~  234 (418)
                      +|++++++. .|..++++.|.+.+++..     ....|+||||+|+..|+.+++++|+.+.      .+.+++.+|..|.
T Consensus         2 ~p~~~~~~~-~~~~~~~~~l~~~~~n~~-----~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~   75 (277)
T d2fo1e1           2 SPIKLHTEA-AGSYAITEPITRESVNII-----DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN   75 (277)
T ss_dssp             CCCHHHHHH-HSSSCCCSCCSTTTTTTC-----CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred             ChHHHHHHh-CCCHHHHHHHHhcCCCcC-----CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCC
Confidence            566766664 477777777777766543     2345788888888888888887776432      2346777888888


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCC
Q 048601          235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG---ADPTIKDDRGRSCFDVARDKGH  311 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~  311 (418)
                      ||||+|+..|+.+++++|+++|++++.++.+|.|||++|+..++.++++++...+   ..++..+..+.++.+.+...+.
T Consensus        76 TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
T d2fo1e1          76 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG  155 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS
T ss_pred             eeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccc
Confidence            8888888888888888888888888888888888888888888888888777654   3455667777788887777665


Q ss_pred             HHHHHH---Hh--------------------cCchHHHHHHcCCHHHHHHH-HhCCCCCCcCCCCCCcHHHHHHHcCCHH
Q 048601          312 IEVLEV---LQ--------------------RGEAVLTAARRGELEGLESL-LDKGASTNYCDQYGLTPLHIAAIKGHKH  367 (418)
Q Consensus       312 ~~~~~~---l~--------------------~~~~~~~a~~~g~~~~~~~L-l~~g~~~~~~~~~g~t~L~~A~~~g~~~  367 (418)
                      .+....   +.                    ...+++.++..++.++++++ ...+.+++.+|..|+||||+|+..|+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~  235 (277)
T d2fo1e1         156 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE  235 (277)
T ss_dssp             TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH
Confidence            443322   21                    12347778888888888765 4678899999999999999999999999


Q ss_pred             HHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          368 VVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       368 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                      +|++|+++|+|++.+|..|+|||++|+++|+.++|++|++
T Consensus       236 iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999983

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=255.98  Aligned_cols=225  Identities=24%  Similarity=0.370  Sum_probs=144.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHH
Q 048601          126 FLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVA  205 (418)
Q Consensus       126 ~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A  205 (418)
                      +|||+||..|+.++|+.|++..+... ...+.+|.||||+|+.  .|+.+++++|+++|++++... ..+..|.+|+++|
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~ga~~~~~~-~~~~~~~~~~~~~   77 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVS--FQAHEITSFLLSKMENVNLDD-YPDDSGWTPFHIA   77 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHH--TTCHHHHHHHHTTCTTCCGGG-CCCTTSCCHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHH--cCCccccchhhhhhccccccc-ccccccccccccc
Confidence            58888888888888888887554332 2234566777777766  667777777777776665421 2455566777777


Q ss_pred             HHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHH
Q 048601          206 AAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEML  285 (418)
Q Consensus       206 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  285 (418)
                      +..+..++++.++...........+..+.|+++.++..++.+++++|++.|...+..+..|+||||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            77777777666665554444455556666777777776777777777776666666666667777777777777777766


Q ss_pred             HHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHc
Q 048601          286 IEMG-ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIK  363 (418)
Q Consensus       286 l~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  363 (418)
                      ++.| .+++.+|..|+||||+|+..|+.+++++                     |++ .|++++.+|..|+||||+|+  
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~---------------------Ll~~~gad~~~~d~~g~t~l~~A~--  214 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL---------------------LVEKYGAEYDLVDNKGAKAEDVAL--  214 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHHHCCCSCCCCTTSCCTGGGCS--
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHH---------------------HHHhcCCCCCCcCCCCCCHHHHHh--
Confidence            6665 4556666666666666666555555444                     443 46666666666666666665  


Q ss_pred             CCHHHHHHHHHcCCC
Q 048601          364 GHKHVVLLLIEFGAD  378 (418)
Q Consensus       364 g~~~~v~~Ll~~ga~  378 (418)
                       +.+++++|+++|+|
T Consensus       215 -~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         215 -NEQVKKFFLNNVVD  228 (229)
T ss_dssp             -CHHHHHHHHHHCCC
T ss_pred             -hHHHHHHHHHcCCC
Confidence             23566666666654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=258.85  Aligned_cols=266  Identities=25%  Similarity=0.325  Sum_probs=226.0

Q ss_pred             chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHH
Q 048601           85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYR  164 (418)
Q Consensus        85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~  164 (418)
                      .+..|..|+..|+.+.|+.|++.-.+     ++.+....|.||||+|+..|+.+++++|++.+.....  ......++..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~d-----in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~--~~~~~~~~~~   77 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCC-----cCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccc--cccccchhhH
Confidence            36789999999999999999876432     3445566799999999999999999999998876533  3446677788


Q ss_pred             HHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCC--------ccCCCCCCcH
Q 048601          165 VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL--------DCRDKEGRTP  236 (418)
Q Consensus       165 ~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--------~~~~~~~~t~  236 (418)
                      .+..  .+..+...++++...+...    .+..+.++++.|+..|+...+..++........        ...+..|.||
T Consensus        78 ~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  151 (285)
T d1wdya_          78 LAAI--AGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  151 (285)
T ss_dssp             HHHH--HTCHHHHHHHHHTTCCTTC----BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred             HHhh--cCCccccchhhhhcccccc----cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchH
Confidence            8887  7999999999999877655    778899999999999999999999875542221        1245678999


Q ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHc----CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601          237 LHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAAN----GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH  311 (418)
Q Consensus       237 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  311 (418)
                      ||+|++.|+.+++++|+++ |++++..+..|.+++..+...    +..+++++|+++|++++.++..|.||||.|+..|+
T Consensus       152 L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~  231 (285)
T d1wdya_         152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCc
Confidence            9999999999999999975 899999999999888876544    34679999999999999999999999999999888


Q ss_pred             HHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Q 048601          312 IEVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN  384 (418)
Q Consensus       312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  384 (418)
                      .+++++                     |++ .|+++|.+|..|.||||+|+++|+.++|++|+++|||+|.+|.
T Consensus       232 ~~~v~~---------------------lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         232 LGLVQR---------------------LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHH---------------------HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHH---------------------HHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            777766                     665 5999999999999999999999999999999999999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.6e-36  Score=269.29  Aligned_cols=250  Identities=26%  Similarity=0.303  Sum_probs=159.2

Q ss_pred             ccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchH
Q 048601          122 FVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSE  201 (418)
Q Consensus       122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~  201 (418)
                      +.+.|+|+.||..|++++|++|+++|+++  +..+.++.||+++|+.  +|+.+++++|+++|++...    .+..+.+|
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv--n~~d~~G~T~L~~A~~--~g~~eiv~~Ll~~~~~~~~----~~~~~~~~  109 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACI--DDNVDMVKFLVENGANINQ----PDNEGWIP  109 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcHHHHHHh--cCCceeeeeeccccccccc----cccccccc
Confidence            44556666666666666666666666554  2234455556666655  5566666666666555444    45555566


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCCHH
Q 048601          202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRR  280 (418)
Q Consensus       202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~  280 (418)
                      |+.|+..++.+++++|++.+.  ..+..+..+.+++++|+..+..++++.++.. +.++..       ............
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~-------~~~~~~~~~~~~  180 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-------ARKEEERIMLRD  180 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH-------HHHHHHHHHHHH
T ss_pred             ccccccccccchhhcccccCc--ccccccccCccccccccccccchhcccccccccccccc-------cccccccccccc
Confidence            666666666666666655443  3344555556666666555555555555543 211110       000000111122


Q ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 048601          281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA  360 (418)
Q Consensus       281 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  360 (418)
                      ....+.....+....+..|.|||+.|+..|+.+++                     ++|+++|+++|.++..|+||||+|
T Consensus       181 ~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~---------------------~~Ll~~g~din~~~~~g~TpL~~A  239 (291)
T d1s70b_         181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL---------------------KLLIQARYDVNIKDYDGWTPLHAA  239 (291)
T ss_dssp             HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHH---------------------HHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             chhhhcccccccccccCCCCChhhHHHHcCChhhh---------------------cccccceecccccccCCCCHHHHH
Confidence            22333333444555667788888877776665555                     458999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcc
Q 048601          361 AIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTM  413 (418)
Q Consensus       361 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~  413 (418)
                      +..|+.++|++|+++|+|++.+|..|+|||++|++    +++++|.+.+.-.+
T Consensus       240 ~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~~~~~  288 (291)
T d1s70b_         240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQN  288 (291)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999976    68888876554333

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-35  Score=251.11  Aligned_cols=222  Identities=27%  Similarity=0.318  Sum_probs=193.8

Q ss_pred             hhhHHHHHHHhhCCHHHHHHHHHc-CCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCC-CccCCCCCCcHH
Q 048601          160 ESLYRVATELAANSEDMVSLLLRA-GLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES-LDCRDKEGRTPL  237 (418)
Q Consensus       160 ~~~l~~a~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~t~L  237 (418)
                      ++|||.|+.  .|+.++++.|++. +.+++.    +|.+|.||||+|+..|+.+++++|++.+.... .+..+..|.+|+
T Consensus         1 n~pLh~A~~--~g~~~~v~~Ll~~~~~~~~~----~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   74 (229)
T d1ixva_           1 NYPLHQACM--ENEFFKVQELLHSKPSLLLQ----KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   74 (229)
T ss_dssp             CCHHHHHHH--HTCHHHHHHHHHHCGGGTTC----CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHH
T ss_pred             CHhHHHHHH--cCCHHHHHHHHHcCCCcccc----cCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccc
Confidence            368999999  8999999999885 456665    89999999999999999999999998765322 345678899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC--CCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 048601          238 HLAVNKTSIGCAKVLLESGADK--EAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL  315 (418)
Q Consensus       238 ~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  315 (418)
                      ++++..+..++++.++..+...  ...+..+.|+++.++..++.+++++|++.|.+.+..+..|+||||.|+..|+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          75 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccc
Confidence            9999999999999999887754  44567889999999999999999999999999999999999999999988887776


Q ss_pred             HHHhcCchHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHH
Q 048601          316 EVLQRGEAVLTAARRGELEGLESLLDKG-ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLA  393 (418)
Q Consensus       316 ~~l~~~~~~~~a~~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A  393 (418)
                      ++                     |++.| .+++.+|..|+||||+|+.+|+.++|++|++ .|+|++.+|..|+|||++|
T Consensus       155 ~~---------------------Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         155 EL---------------------LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             HH---------------------HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             cc---------------------ccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            66                     67765 6889999999999999999999999999997 5999999999999999999


Q ss_pred             HhcCCcceeehhhhccCCcc
Q 048601          394 VEGGRVEPLLFIWLKQWGTM  413 (418)
Q Consensus       394 ~~~g~~~~v~~Ll~~~~g~~  413 (418)
                      +.   .+++++|+.  .|+|
T Consensus       214 ~~---~~~~~~Ll~--~g~d  228 (229)
T d1ixva_         214 LN---EQVKKFFLN--NVVD  228 (229)
T ss_dssp             SC---HHHHHHHHH--HCCC
T ss_pred             hh---HHHHHHHHH--cCCC
Confidence            85   479999994  4543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=9.8e-34  Score=253.29  Aligned_cols=244  Identities=19%  Similarity=0.208  Sum_probs=193.5

Q ss_pred             hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601           86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV  165 (418)
Q Consensus        86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~  165 (418)
                      ...|+.|+..|+.+.++.+++.-.   .  ++ ..+..|.||||+|+..|+.++|++|++++.+.  ......+.++++.
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Ga---d--vn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~--~~~~~~~~~~L~~  112 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGA---D--IN-YANVDGLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHA  112 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCC---C--TT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCC---C--CC-ccCCCCCcHHHHHHhcCCceeeeeeccccccc--ccccccccccccc
Confidence            366999999999999999986533   1  22 34567999999999999999999999998765  3345678899999


Q ss_pred             HHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCC
Q 048601          166 ATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS  245 (418)
Q Consensus       166 a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~  245 (418)
                      ++.  .++.+++++|+++|...+.    .+..+.+++++|+..++.+.+..++...+. ....       ..........
T Consensus       113 a~~--~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~-~~~~-------~~~~~~~~~~  178 (291)
T d1s70b_         113 AAS--CGYLDIAEYLISQGAHVGA----VNSEGDTPLDIAEEEAMEELLQNEVNRQGV-DIEA-------ARKEEERIML  178 (291)
T ss_dssp             HHH--HTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHCCSHHHHHHHHHHHHHHTC-CHHH-------HHHHHHHHHH
T ss_pred             ccc--ccccchhhcccccCccccc----ccccCccccccccccccchhcccccccccc-cccc-------cccccccccc
Confidence            998  8999999999999998877    889999999999999999999999965431 1111       0111111112


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHH
Q 048601          246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL  325 (418)
Q Consensus       246 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  325 (418)
                      ......+.....+....+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++        
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~l--------  250 (291)
T d1s70b_         179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI--------  250 (291)
T ss_dssp             HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH--------
T ss_pred             ccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHH--------
Confidence            334445555666666777889999999999999999999999999999999999999999888877776655        


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601          326 TAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       326 ~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  376 (418)
                                   |+++|++++.+|..|.||||+|++    +++++|.+..
T Consensus       251 -------------Ll~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         251 -------------LVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             -------------HHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             -------------HHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence                         888999999999999999999975    5777776643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=7e-33  Score=235.20  Aligned_cols=206  Identities=30%  Similarity=0.377  Sum_probs=173.3

Q ss_pred             HHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 048601          174 EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL  253 (418)
Q Consensus       174 ~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  253 (418)
                      .|+|++|+++|++++.   ..|.+|.||||+|+..|+.+++++|++.+.  .++.++..+.++++.++..++........
T Consensus         2 ~~~v~~Ll~~g~din~---~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~--~~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA---TMDKTGETSLHLAARFARADAAKRLLDAGA--DANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCc---CcCCCCCCHHHHHHHcCCHHHHHHHHhhcc--ccccccccccccccccccccccccccccc
Confidence            4788999999888765   136788999999999999999999997665  66788888999999999888887777666


Q ss_pred             HcCCC-CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCC
Q 048601          254 ESGAD-KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGE  332 (418)
Q Consensus       254 ~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~  332 (418)
                      ..... .......+.++.+.+.........+.|.+.+++++.++..|+|||+.++..+..++++.               
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~---------------  141 (209)
T d1ot8a_          77 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI---------------  141 (209)
T ss_dssp             TCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH---------------
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeee---------------
Confidence            55433 33344567788888888888999999999999999999999999998888777666555               


Q ss_pred             HHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehh
Q 048601          333 LEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI  405 (418)
Q Consensus       333 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~L  405 (418)
                            +++++.+++..|..|.||||+|+.+|+.++|++|+++|+|++.+|..|+|||++|+++|+.++|++|
T Consensus       142 ------l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         142 ------LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             ------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ------eccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence                  7888889999999999999999999999999999999999999999999999999999999999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.7e-33  Score=245.88  Aligned_cols=245  Identities=22%  Similarity=0.291  Sum_probs=198.3

Q ss_pred             CCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhc--------chhhhhcCChhhhhhhHHHHH
Q 048601           96 GSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKR--------QKMILAGLSSAEAESLYRVAT  167 (418)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~--------~~~~~~~~~~~~~~~~l~~a~  167 (418)
                      +..+.+.+.+.+...      +......|+||||+||..|+.++|++|+.+        |++++  ..+..|.||||+|+
T Consensus        11 ~~~~~~~~~l~~~~~------n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn--~~d~~G~TpLh~A~   82 (277)
T d2fo1e1          11 AGSYAITEPITRESV------NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMDCDENTPLMLAV   82 (277)
T ss_dssp             HSSSCCCSCCSTTTT------TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHHhcCC------CcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc--ccCCCCCeeecccc
Confidence            344566666654332      222233599999999999999999888654        45553  34578999999999


Q ss_pred             HHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccC-CCCccCCCCCCcHHHHHHHcCCH
Q 048601          168 ELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEY-ESLDCRDKEGRTPLHLAVNKTSI  246 (418)
Q Consensus       168 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~t~L~~A~~~~~~  246 (418)
                      .  .|+.+++++|+++|++++.    ++.+|.|||++|+..++.+++.++...... ..++..+..+.++.+.+...+..
T Consensus        83 ~--~g~~~iv~~Ll~~Gad~n~----~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
T d2fo1e1          83 L--ARRRRLVAYLMKAGADPTI----YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR  156 (277)
T ss_dssp             H--HTCHHHHHHHHHTTCCSCC----CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred             c--ccccccccccccccccccc----ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccc
Confidence            9  8999999999999999988    899999999999999999999998865421 24566788899999999887763


Q ss_pred             ---HHHHHHHHcCC--------CCCCCCCCCccHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 048601          247 ---GCAKVLLESGA--------DKEAKGKDGKTSLHNAAANGDRRMVEMLI-EMGADPTIKDDRGRSCFDVARDKGHIEV  314 (418)
Q Consensus       247 ---~~v~~Ll~~~~--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~  314 (418)
                         ..+.++.+...        ..+..+..|.||||+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~i  236 (277)
T d2fo1e1         157 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV  236 (277)
T ss_dssp             THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             cccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHH
Confidence               34555554432        23456678999999999999999998755 6688899999999999999988887776


Q ss_pred             HHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 048601          315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF  375 (418)
Q Consensus       315 ~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  375 (418)
                      +++                     |+++|+++|.+|..|+||||+|+++|+.++|++|++.
T Consensus       237 v~~---------------------Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         237 VMY---------------------LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHH---------------------HHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHH---------------------HHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            665                     8999999999999999999999999999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-32  Score=234.15  Aligned_cols=217  Identities=29%  Similarity=0.343  Sum_probs=134.2

Q ss_pred             hhhhhHHHHHHHhhCCHHHHHHHHH----cCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCC
Q 048601          158 EAESLYRVATELAANSEDMVSLLLR----AGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEG  233 (418)
Q Consensus       158 ~~~~~l~~a~~~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  233 (418)
                      +|.||||+|+.  .|+.+++++|++    .|++++.    .|..|.||||+|+..|+.+++++|++.+.  ..+..+..+
T Consensus         2 dG~TpLh~A~~--~g~~~~v~~Ll~~~~~~g~~in~----~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga--~~~~~~~~~   73 (228)
T d1k1aa_           2 DGDTPLHIAVV--QGNLPAVHRLVNLFQQGGRELDI----YNNLRQTPLHLAVITTLPSVVRLLVTAGA--SPMALDRHG   73 (228)
T ss_dssp             TTCCHHHHHHH--TTCHHHHHHHHHHHHHTTCCSCC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTS
T ss_pred             CCccHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCc----cCCCCCccceehhcccccccccccccccc--ccccccccc
Confidence            34455555554  455555555542    4444444    44455555555555555555555554332  333444445


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Q 048601          234 RTPLHLAVNKTSIGCAKVLLESGA----DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPT-IKDDRGRSCFDVARD  308 (418)
Q Consensus       234 ~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~  308 (418)
                      .++++.|...++.++++.+.....    ..+.......++|+.+.........+.|.....+.. .....+.++++.   
T Consensus        74 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---  150 (228)
T d1k1aa_          74 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH---  150 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH---
T ss_pred             ccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHH---
Confidence            555555555555555444443321    112223334445555555555555555544443322 223334444444   


Q ss_pred             cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCc
Q 048601          309 KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA  388 (418)
Q Consensus       309 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t  388 (418)
                                        |+..+..+++++++++|.+++.++..|.||||+|+.+|+.+++++|+++|+|++.+|..|+|
T Consensus       151 ------------------a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~T  212 (228)
T d1k1aa_         151 ------------------AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT  212 (228)
T ss_dssp             ------------------HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ------------------HHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence                              55555555666689999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhcCCcceee
Q 048601          389 PLHLAVEGGRVEPLL  403 (418)
Q Consensus       389 ~l~~A~~~g~~~~v~  403 (418)
                      ||++|+++|+.|+||
T Consensus       213 pL~~A~~~~~~divk  227 (228)
T d1k1aa_         213 PLMVARSRRVIDILR  227 (228)
T ss_dssp             TTTTCSSHHHHHHHT
T ss_pred             HHHHHHhCCCccccC
Confidence            999999999999885

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=240.46  Aligned_cols=191  Identities=28%  Similarity=0.359  Sum_probs=159.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcc--cCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHH
Q 048601          197 DGWSELHVAAAFGRTEEISSLVRMK--EYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAA  274 (418)
Q Consensus       197 ~~~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  274 (418)
                      +|.||||+|+..|+.+++..|++..  .+..++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999876665555422  23467888999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCc
Q 048601          275 ANGDRRMVEMLIEMGADPT------IKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNY  348 (418)
Q Consensus       275 ~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~  348 (418)
                      ..|+.+++++|++.+.+..      .....|.||++.|+..++.+++++                     |+..|..++.
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~---------------------l~~~~~~~~~  139 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL---------------------LVSLGADVNA  139 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHHTCCTTC
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheee---------------------ecccCccccc
Confidence            9999999999998876533      234557888888887777666555                     7788888877


Q ss_pred             CC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601          349 CD-QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK  408 (418)
Q Consensus       349 ~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  408 (418)
                      .+ .+|.||||+|+..|+.+++++|+++|+|++.+|..|+|||++|++.++.+++++|++.
T Consensus       140 ~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         140 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             ccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            65 5799999999999999999999999999999999999999999999999999988754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=2.3e-30  Score=219.47  Aligned_cols=207  Identities=27%  Similarity=0.343  Sum_probs=187.2

Q ss_pred             HHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHH
Q 048601          137 FNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISS  216 (418)
Q Consensus       137 ~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~  216 (418)
                      .|+|++|+++|++++.. .+.+|.||||+|+.  .|+.|++++|++.|++++.    .+..+.++++.++..++......
T Consensus         2 ~~~v~~Ll~~g~din~~-~d~~G~t~L~~A~~--~g~~e~v~~Ll~~g~~~n~----~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           2 AQVISDLLAQGAELNAT-MDKTGETSLHLAAR--FARADAAKRLLDAGADANS----QDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcC-cCCCCCCHHHHHHH--cCCHHHHHHHHhhcccccc----ccccccccccccccccccccccc
Confidence            48999999999998542 35789999999999  9999999999999999987    89999999999999999988777


Q ss_pred             HHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 048601          217 LVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD  296 (418)
Q Consensus       217 Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  296 (418)
                      ...... .........+.++.+.+.........+.|.+.+++++.++..|.|||++|+..|..++++.+++.+.+++..|
T Consensus        75 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d  153 (209)
T d1ot8a_          75 LLRNRA-TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD  153 (209)
T ss_dssp             HHTCTT-CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cccccc-cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccc
Confidence            765443 3444556778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHH
Q 048601          297 DRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL  372 (418)
Q Consensus       297 ~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  372 (418)
                      ..|.||||+|+..|+.+++++                     |+++|++++.+|..|+||||+|+++|+.++|++|
T Consensus       154 ~~g~TpL~~A~~~g~~~~v~~---------------------Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         154 DKDETPLFLAAREGSYEASKA---------------------LLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccchhccccHHHHHHH---------------------HHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999998888777665                     8999999999999999999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.3e-30  Score=218.71  Aligned_cols=219  Identities=25%  Similarity=0.346  Sum_probs=190.7

Q ss_pred             cchHHHHHHHHCCCHHHHHHHHh----cchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCC
Q 048601          123 VGPFLLRHAVSNGDFNAVKSILK----RQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDG  198 (418)
Q Consensus       123 ~g~~~L~~A~~~g~~~~vk~Ll~----~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  198 (418)
                      +|.||||+||..|+.++|++|++    .|.++  +..+..+.|||++|+.  .|+.+++++|+++|++.+.    ....+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i--n~~d~~g~TpL~~A~~--~~~~~iv~~Ll~~ga~~~~----~~~~~   73 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVI--TTLPSVVRLLVTAGASPMA----LDRHG   73 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CccCCCCCccceehhc--ccccccccccccccccccc----ccccc
Confidence            59999999999999999999986    44444  3345688999999999  8999999999999999887    88889


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcccC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCccHHHHHHH
Q 048601          199 WSELHVAAAFGRTEEISSLVRMKEY--ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKE-AKGKDGKTSLHNAAA  275 (418)
Q Consensus       199 ~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~  275 (418)
                      .++++.|...++.++++.+......  ...+.......++|+.+.........+.|.....+.. .....+.++|+.|+.
T Consensus        74 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~  153 (228)
T d1k1aa_          74 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  153 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             ccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHH
Confidence            9999999999999999988764432  2334556678899999999999999999998876544 345678999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Q 048601          276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLT  355 (418)
Q Consensus       276 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t  355 (418)
                      .+..+++++++++|.+.+.++..|.||||+|+..|+.+++++                     |+++|+|+|.+|..|+|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~---------------------Ll~~Gad~n~~d~~G~T  212 (228)
T d1k1aa_         154 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT---------------------LVRSGADSSLKNCHNDT  212 (228)
T ss_dssp             TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTSCC
T ss_pred             hhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHH---------------------HHHCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999998887776665                     89999999999999999


Q ss_pred             HHHHHHHcCCHHHHH
Q 048601          356 PLHIAAIKGHKHVVL  370 (418)
Q Consensus       356 ~L~~A~~~g~~~~v~  370 (418)
                      |||+|+++|+.++||
T Consensus       213 pL~~A~~~~~~divk  227 (228)
T d1k1aa_         213 PLMVARSRRVIDILR  227 (228)
T ss_dssp             TTTTCSSHHHHHHHT
T ss_pred             HHHHHHhCCCccccC
Confidence            999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-31  Score=225.14  Aligned_cols=191  Identities=23%  Similarity=0.325  Sum_probs=158.6

Q ss_pred             hhhhHHHHHHHhhCC----HHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCC
Q 048601          159 AESLYRVATELAANS----EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR  234 (418)
Q Consensus       159 ~~~~l~~a~~~~~~~----~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  234 (418)
                      |.||||+|+.  .|+    .++++++...|++++.    +|.+|+||||+|+..|+.+++++|++.+.  +++.+|..|.
T Consensus         2 G~t~Lh~A~~--~g~~~~~~~li~~~~~~~~~in~----~d~~g~TpLh~A~~~~~~~iv~~L~~~g~--d~~~~d~~g~   73 (221)
T d1iknd_           2 GDSFLHLAII--HEEKALTMEVIRQVKGDLAFLNF----QNNLQQTPLHLAVITNQPEIAEALLGAGC--DPELRDFRGN   73 (221)
T ss_dssp             CCCTTHHHHH--TTCSSSSSCCCC-----CCCCCC----CCTTCCCHHHHHHHTTCHHHHHCCCSCCC--CSCCCCTTCC
T ss_pred             CChHHHHHHH--cCCHHHHHHHHHHHHhCCCCccc----CCCCCCccccccccccccccccccccccc--cccccccccc
Confidence            3455555554  444    2445566677888887    89999999999999999999999998665  7788999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHH
Q 048601          235 TPLHLAVNKTSIGCAKVLLESGADKE------AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVAR  307 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~  307 (418)
                      |||++|+..++.++++.|++.+....      .....|.||||.|+..|+.+++++|++.|+.++..+ ..|.||||+|+
T Consensus        74 t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~  153 (221)
T d1iknd_          74 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV  153 (221)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccc
Confidence            99999999999999999999876543      234568899999999999999999999999988755 57999999999


Q ss_pred             HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      ..|+.+++++                     |+++|+|++.+|..|+||||+|+.+++.+++++|++.+.+
T Consensus       154 ~~g~~~~v~~---------------------Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         154 DLQNPDLVSL---------------------LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HTTCHHHHHH---------------------HHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ccccHHHHHH---------------------HHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            8888777666                     8899999999999999999999999999999999998765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-30  Score=206.70  Aligned_cols=151  Identities=28%  Similarity=0.397  Sum_probs=106.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 048601          235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV  314 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  314 (418)
                      +|||+||..|+.++|++|+++|++++.+|.+|.||||+|+ .|+.+++++|+++|++++..+..+.++++.++..++.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            5677777777777777777777777777777777777664 567777777777777777777777777776666655555


Q ss_pred             HHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCcHhHHH
Q 048601          315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA-DVECQDNEGHAPLHLA  393 (418)
Q Consensus       315 ~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t~l~~A  393 (418)
                      +++                     |++.+.+++..+..|.+||++|+..|+.+++++|+++|+ +++.+|..|+||||+|
T Consensus        82 ~~~---------------------l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A  140 (156)
T d1ihba_          82 LQT---------------------LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA  140 (156)
T ss_dssp             HHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred             ccc---------------------cccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHH
Confidence            444                     566666777777777777777777777777777777765 6677777777777777


Q ss_pred             HhcCCcceeehhhh
Q 048601          394 VEGGRVEPLLFIWL  407 (418)
Q Consensus       394 ~~~g~~~~v~~Ll~  407 (418)
                      +..|+.++|++|++
T Consensus       141 ~~~~~~~iv~~Ll~  154 (156)
T d1ihba_         141 RLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHh
Confidence            77777777777763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-29  Score=201.37  Aligned_cols=147  Identities=29%  Similarity=0.431  Sum_probs=79.7

Q ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 048601          237 LHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL  315 (418)
Q Consensus       237 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  315 (418)
                      |+.||..|+.++|+.|++. +++++..|..|+||||+|+ .|+.+++++|++++++++..+..|.+|++.++..++.+++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTL   84 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            5555555555555555543 4455555555555555443 2455555555555555555555555555555444444433


Q ss_pred             HHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHh
Q 048601          316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE  395 (418)
Q Consensus       316 ~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  395 (418)
                      ++                     ++++|+++|.++..|.||||+|+..|+.+++++|+ .|++++.+|..|+|||++|++
T Consensus        85 ~~---------------------~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~  142 (156)
T d1bd8a_          85 KV---------------------LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ  142 (156)
T ss_dssp             HH---------------------HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHH
T ss_pred             cc---------------------ccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHH
Confidence            33                     45555555555555555666665556655555554 455555555556666666666


Q ss_pred             cCCcceeehhh
Q 048601          396 GGRVEPLLFIW  406 (418)
Q Consensus       396 ~g~~~~v~~Ll  406 (418)
                      .|+.+++++|+
T Consensus       143 ~g~~~iv~~Ll  153 (156)
T d1bd8a_         143 RGAQDLVDILQ  153 (156)
T ss_dssp             SCCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            66666655555

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.4e-29  Score=198.93  Aligned_cols=150  Identities=28%  Similarity=0.399  Sum_probs=121.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 048601          234 RTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE  313 (418)
Q Consensus       234 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  313 (418)
                      .|||+.||+.|+.++|++|+++|++++ .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            378888888888888888888888776 5777888888888888888888888777766666677777777776666666


Q ss_pred             HHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601          314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA  393 (418)
Q Consensus       314 ~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  393 (418)
                      ++++                     ++.+|++++.++..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|
T Consensus        82 ~~~~---------------------l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A  140 (153)
T d1awcb_          82 IVEV---------------------LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             HHHH---------------------HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             eeec---------------------ccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHH
Confidence            5544                     7778888888888888888888888888888888888888888888888888888


Q ss_pred             HhcCCcceeehh
Q 048601          394 VEGGRVEPLLFI  405 (418)
Q Consensus       394 ~~~g~~~~v~~L  405 (418)
                      +.+|+.|++++|
T Consensus       141 ~~~g~~eiv~lL  152 (153)
T d1awcb_         141 IDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHHhC
Confidence            888888888865

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=1.1e-31  Score=244.90  Aligned_cols=228  Identities=12%  Similarity=0.092  Sum_probs=122.6

Q ss_pred             hhhhhHHHHHHHhhCCHHHHHH---HHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCC--CC
Q 048601          158 EAESLYRVATELAANSEDMVSL---LLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD--KE  232 (418)
Q Consensus       158 ~~~~~l~~a~~~~~~~~~~v~~---Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~  232 (418)
                      .+.+++++|+.  +|+.+++++   |++.|++++.    .+..|.||||+|+..|+.++|++|++.+.  +++..+  .+
T Consensus        89 ~~~t~L~~Aa~--~g~~~~~~~~~~L~~~~~~in~----~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~--~~~~~~~~~~  160 (346)
T d2ajaa1          89 KSEVICFVAAI--TGCSSALDTLCLLLTSDEIVKV----IQAENYQAFRLAAENGHLHVLNRLCELAP--TEIMAMIQAE  160 (346)
T ss_dssp             CHHHHHHHHHH--HCCHHHHHHHTTC--CCSSCC------CHHHHHHHHHHHHTTCHHHHHHHHHSCT--TTHHHHHSHH
T ss_pred             CCCcHHHHHHH--hCCHHHHHHHHHHHhCCCcccc----cCCCCCCHHHHHHHCCCHHHHHHHHHcCC--CccccccccC
Confidence            34555555555  555544443   4555555555    55555666666666666666666665443  233322  33


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADKE---AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK  309 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  309 (418)
                      |.||||+|++.|+.++|++|++.|++..   ..+..+.||++.|+.+|+.++|++|+++|++++.       +.+.+...
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~-------~~~~~~~~  233 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY-------AEIHEFEY  233 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH-------HHHCTTTT
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch-------HHHHHHHc
Confidence            5566666666666666666666554331   1223344555555555666666666655554332       22222223


Q ss_pred             CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCC--CCCcCCC-------CCCcHHHHHHHcCCHHHHHHHHHcCCC--
Q 048601          310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGA--STNYCDQ-------YGLTPLHIAAIKGHKHVVLLLIEFGAD--  378 (418)
Q Consensus       310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~--~~~~~~~-------~g~t~L~~A~~~g~~~~v~~Ll~~ga~--  378 (418)
                      ++..+..++.       +...+..+....+.....  ..+..+.       .+.++++.|+..|+.+++++|++.+..  
T Consensus       234 ~~~~~~~~~~-------~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~  306 (346)
T d2ajaa1         234 GEKYVNPFIA-------RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA  306 (346)
T ss_dssp             TTTTHHHHHH-------HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGG
T ss_pred             CcHhhhHHHH-------HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhh
Confidence            3333332221       111111111111111111  1111111       234788999999999999999998754  


Q ss_pred             ---CCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601          379 ---VECQDNEGHAPLHLAVEGGRVEPLLFIWL  407 (418)
Q Consensus       379 ---~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~  407 (418)
                         .+..+..|.||||+|++.|+.++|++|+.
T Consensus       307 ~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         307 LAPTATIPGDANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             GSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             hcccccCCCCCCcHHHHHHHcCcHHHHHHHhC
Confidence               34455679999999999999999999994

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-28  Score=197.07  Aligned_cols=153  Identities=30%  Similarity=0.424  Sum_probs=137.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      +|||+|+..|+.++|++|++.+.  +++.+|..|.||||+|+ .|+.+++++|+++|++++..+..+.++|+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~--d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC--CcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            78999999999999999998654  77889999999999775 7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCcHHH
Q 048601          280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGA-STNYCDQYGLTPLH  358 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~  358 (418)
                      +++++|++.+.+++..+..|.+|++.|+..++.+++++                     |+++|. +++.+|..|.||||
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~---------------------Ll~~~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF---------------------LVKHTASNVGHRNHKGDTACD  138 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHHSCCCTTCCCTTSCCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccc---------------------ccccccccccccCCCCCCHHH
Confidence            99999999999999999999999999888887777666                     666664 78899999999999


Q ss_pred             HHHHcCCHHHHHHHHHcC
Q 048601          359 IAAIKGHKHVVLLLIEFG  376 (418)
Q Consensus       359 ~A~~~g~~~~v~~Ll~~g  376 (418)
                      +|+.+|+.++|++|+++|
T Consensus       139 ~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         139 LARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHhcC
Confidence            999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-28  Score=196.39  Aligned_cols=152  Identities=29%  Similarity=0.403  Sum_probs=136.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601          200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR  279 (418)
Q Consensus       200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  279 (418)
                      ..|+.|+..|+.++|++|++.++ .+++..|..|.||||+|+ .|+.+++++|++++.+++..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~-~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHREL-VHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTC-CCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCC-CCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            56999999999999999998654 578889999999999886 4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601          280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI  359 (418)
Q Consensus       280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  359 (418)
                      +++++++++|++++.++..|.||||+|+..|+.+++++                     |+ .|++++.+|..|+||||+
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~---------------------L~-~~~~~~~~d~~G~TpL~~  139 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF---------------------LA-AESDLHRRDARGLTPLEL  139 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH---------------------HH-TTSCTTCCCTTSCCHHHH
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccc---------------------cc-ccccccccCCCCCCHHHH
Confidence            99999999999999999999999999988888777765                     55 678999999999999999


Q ss_pred             HHHcCCHHHHHHHHHc
Q 048601          360 AAIKGHKHVVLLLIEF  375 (418)
Q Consensus       360 A~~~g~~~~v~~Ll~~  375 (418)
                      |+.+|+.+++++|+++
T Consensus       140 A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         140 ALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHSCCHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHhh
Confidence            9999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.9e-26  Score=185.01  Aligned_cols=151  Identities=33%  Similarity=0.454  Sum_probs=137.3

Q ss_pred             hhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHH
Q 048601          159 AESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLH  238 (418)
Q Consensus       159 ~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~  238 (418)
                      ..+||+.|+.  .|+.++|++|+++|++++     .+..|.||||+|+..++.+++..++....  .....+..+.++++
T Consensus         2 ~~t~L~~Aa~--~g~~~~v~~LL~~ga~~~-----~~~~g~t~L~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   72 (153)
T d1awcb_           2 LGKKLLEAAR--AGQDDEVRILMANGAPFT-----TDWLGTSPLHLAAQYGHFSTTEVLLRAGV--SRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHH--HTCHHHHHHHHHHTCCCC-----CCTTCCCHHHHHHHHTCHHHHHHHHTTTC--CTTCCCTTCCCHHH
T ss_pred             CCHHHHHHHH--CCCHHHHHHHHHcCCCcc-----cccCCCccccccccccccccccccccccc--cccccccccccccc
Confidence            3578888888  789999999999998765     57889999999999999999999987655  34556777889999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Q 048601          239 LAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL  318 (418)
Q Consensus       239 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  318 (418)
                      .++...+.++++++.+++++.+.++..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.+|+.+++++|
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=2.4e-29  Score=229.28  Aligned_cols=235  Identities=14%  Similarity=0.106  Sum_probs=161.0

Q ss_pred             cccchHHHHHHHHCCCHHHHHH---HHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCC
Q 048601          121 AFVGPFLLRHAVSNGDFNAVKS---ILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKD  197 (418)
Q Consensus       121 ~~~g~~~L~~A~~~g~~~~vk~---Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  197 (418)
                      +..|.|+|++|+.+|+.+++++   |++.+++++.  .+..+.||||+|+.  +|+.++|++|++.|++++...  .+.+
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~--~~~~g~taL~~Aa~--~G~~~~v~~Ll~~g~~~~~~~--~~~~  160 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV--IQAENYQAFRLAAE--NGHLHVLNRLCELAPTEIMAM--IQAE  160 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHH--TTCHHHHHHHHHSCTTTHHHH--HSHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccc--cCCCCCCHHHHHHH--CCCHHHHHHHHHcCCCccccc--cccC
Confidence            4568999999999999888776   6788877633  46788999999999  999999999999999887611  2346


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcccCC-CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-------CCCCccH
Q 048601          198 GWSELHVAAAFGRTEEISSLVRMKEYE-SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK-------GKDGKTS  269 (418)
Q Consensus       198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-------~~~g~t~  269 (418)
                      |.||||+|+..|+.++|++|++.+... ..+..+..+.||++.|+.+|+.+++++|++.|++++..       ...+.++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  240 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  240 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence            899999999999999999999876522 22334456778889999999999999999998765421       1222334


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC--
Q 048601          270 LHNAAANGDRRMVEMLIEMGAD--PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS--  345 (418)
Q Consensus       270 L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~--  345 (418)
                      ++.+...+..+....+.....+  .+..+..       ....+.       ....++..++..|..+++++|++.+..  
T Consensus       241 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~-------~~~~~~-------~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~  306 (346)
T d2ajaa1         241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKS-------ECLQGF-------YMLRNLIRRNDEVLLDDIRFLLSIPGIKA  306 (346)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHH-------HHHHHH-------HHHHHHHHHCCGGGHHHHHHHHTSTTTGG
T ss_pred             HHHHhhccchHHHHHHHHhcccccHhHHhcc-------cccccc-------hhhhHHHHHhcCChHHHHHHHHhCcChhh
Confidence            4443333333332222221111  1111100       000000       011245567777888888889887653  


Q ss_pred             ---CCcCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 048601          346 ---TNYCDQYGLTPLHIAAIKGHKHVVLLLIEF  375 (418)
Q Consensus       346 ---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  375 (418)
                         .+..+..|+||||+|+++||.++|++|++.
T Consensus       307 ~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         307 LAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             GSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence               344556799999999999999999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-27  Score=181.87  Aligned_cols=119  Identities=33%  Similarity=0.429  Sum_probs=84.6

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601          266 GKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS  345 (418)
Q Consensus       266 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~  345 (418)
                      +.++||+|+..|+.++|++|+++|++++.++..|.||+|.|+ .|+.++++                     +|+++|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~---------------------~Ll~~ga~   60 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAE---------------------LLLLHGAE   60 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHH---------------------HHHTTTCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccc---------------------cccccccc
Confidence            345677777777777777777777777777777777766443 34444433                     36677777


Q ss_pred             CCcCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601          346 TNYCDQYGL-TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       346 ~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  406 (418)
                      ++.++..|. ||||+|+.+|+.++|++|+++|++++.+|..|+|||++|+++|+.+++++|+
T Consensus        61 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          61 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            777666654 5788888888888888888888888888888888888888888888887776

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.6e-27  Score=180.51  Aligned_cols=115  Identities=31%  Similarity=0.382  Sum_probs=99.8

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC
Q 048601          267 KTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST  346 (418)
Q Consensus       267 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~  346 (418)
                      .|||++|+++|+.++|++|+++|++++.++..|+||||+|+..|+.+++++                     |+++|+++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~---------------------ll~~g~di   61 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF---------------------LLLKGADI   61 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHH---------------------HHHSSCTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccc---------------------ccccccee
Confidence            478899999999999999999999988888889998888887776665554                     78889999


Q ss_pred             CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601          347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIW  406 (418)
Q Consensus       347 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  406 (418)
                      |.+|..|+||||+|+.+|+.++|++|+++|+|++.+|..|+|||++|.    .+.++.||
T Consensus        62 n~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          62 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             TCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             eecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            999999999999999999999999999999999999999999999883    35666666

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=177.54  Aligned_cols=120  Identities=27%  Similarity=0.382  Sum_probs=87.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC-CHHHHHHHcCC
Q 048601          233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGR-SCFDVARDKGH  311 (418)
Q Consensus       233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~  311 (418)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||||.|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            456777777777777777777777777777777777777553 5777777777777777777766654 57777766666


Q ss_pred             HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 048601          312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE  374 (418)
Q Consensus       312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  374 (418)
                      .+++++                     |+++|++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        82 ~~~v~~---------------------Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVV---------------------LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHH---------------------HHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccc---------------------ccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            555544                     677777777777777778887777777777777754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.8e-26  Score=205.19  Aligned_cols=186  Identities=21%  Similarity=0.233  Sum_probs=119.2

Q ss_pred             cCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCC-------HHHHHHHHHc
Q 048601          183 AGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS-------IGCAKVLLES  255 (418)
Q Consensus       183 ~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~-------~~~v~~Ll~~  255 (418)
                      .+.+++.   ..|.+|.||||+|+..|+.++|++|++.+.  +++.+|..|.||||.|+..++       .++++++.+ 
T Consensus        95 ~~~dvn~---~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga--d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-  168 (301)
T d1sw6a_          95 TQLNLNI---PVDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-  168 (301)
T ss_dssp             SCCCSCS---CCSTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-
T ss_pred             cCCCcCc---CcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh-
Confidence            3455553   127778888888888888888888887654  677888888888888887654       244454433 


Q ss_pred             CCCCCCCCCCCccHHHHHHHcCC----HH--------HHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 048601          256 GADKEAKGKDGKTSLHNAAANGD----RR--------MVEMLIEMGADP-TIKDDRGRSCFDVARDKGHIEVLEVLQRGE  322 (418)
Q Consensus       256 ~~~~~~~~~~g~t~L~~A~~~g~----~~--------~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  322 (418)
                        .+...|..|+||||+++..+.    ..        ++.++++.+... ......+.++++.+........+..+    
T Consensus       169 --~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  242 (301)
T d1sw6a_         169 --CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL----  242 (301)
T ss_dssp             --GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC----
T ss_pred             --hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHH----
Confidence              345567778888887775433    22        334444544332 22333344444444433333322221    


Q ss_pred             hHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHH
Q 048601          323 AVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV  394 (418)
Q Consensus       323 ~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  394 (418)
                                  .+.+++..  .+|.+|..|+||||+|+++|+.++|++|+++|||++.+|+.|.|||++|+
T Consensus       243 ------------~~~~~~~~--~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         243 ------------DLKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ------------SHHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ------------hhHHHHhc--CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                        12223332  37889999999999999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.9e-26  Score=174.77  Aligned_cols=119  Identities=27%  Similarity=0.379  Sum_probs=88.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCC
Q 048601          268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN  347 (418)
Q Consensus       268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~  347 (418)
                      ++|+.|+..|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++                     |+++|++++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~---------------------ll~~g~~~~   61 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF---------------------LVQFGVNVN   61 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHHTCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccc---------------------ccccccccc
Confidence            46677777777777777777777777777777777777766666555544                     667777777


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCcHhHHH--HhcCCcceeehhhh
Q 048601          348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN-EGHAPLHLA--VEGGRVEPLLFIWL  407 (418)
Q Consensus       348 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A--~~~g~~~~v~~Ll~  407 (418)
                      .+|.+|+||||+|+.+|+.++|++|+++|++++.++. .|.||++++  .+.|+.+++++|+.
T Consensus        62 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          62 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             cccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            7778888888888888888888888888888876664 477776665  46778888888874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.8e-26  Score=174.73  Aligned_cols=79  Identities=24%  Similarity=0.318  Sum_probs=39.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 048601          235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE  313 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  313 (418)
                      |||++|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            4455555555555555555555555555555555555555555555555555555555555555555555544444333

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.7e-25  Score=169.37  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=78.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 048601          235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV  314 (418)
Q Consensus       235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  314 (418)
                      ++|+.|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            45666666666666666666666666666666677777766666777777766666666666666676666666655554


Q ss_pred             HHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC-CCCcHHHHH--HHcCCHHHHHHHHHc
Q 048601          315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ-YGLTPLHIA--AIKGHKHVVLLLIEF  375 (418)
Q Consensus       315 ~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A--~~~g~~~~v~~Ll~~  375 (418)
                      +++                     |+++|++++..+. .|+||++++  +.+|+.+++++|++.
T Consensus        83 v~~---------------------Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKF---------------------LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHH---------------------HHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHH---------------------HHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            444                     6666666665543 356665544  455677777777654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-23  Score=167.09  Aligned_cols=125  Identities=20%  Similarity=0.188  Sum_probs=107.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhC
Q 048601          269 SLHNAAANGDRRMVEMLIEMGADPTIK------DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDK  342 (418)
Q Consensus       269 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~  342 (418)
                      .|..|++.++...+..++..|+|++..      +..|+||||+|+..+.                  .|..+++++|+++
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~------------------~~~~~iv~~Ll~~   70 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD------------------RTSLHIVDFLVQN   70 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC------------------TTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC------------------CCCHHHHHHHHHc
Confidence            345677888888888888888776643      6678999999987532                  2345566679999


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCC
Q 048601          343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG  411 (418)
Q Consensus       343 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g  411 (418)
                      |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++.|+.+++++|++.+.|
T Consensus        71 gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          71 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999977665

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.2e-22  Score=161.30  Aligned_cols=121  Identities=25%  Similarity=0.278  Sum_probs=84.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601          237 LHLAVNKTSIGCAKVLLESGADKEAK------GKDGKTSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSCFDVAR  307 (418)
Q Consensus       237 L~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  307 (418)
                      |..|++.+.+..+..++..|.+++..      +..|.||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            34555566666665566555554433      45677777777753   5667777777777777777777777777777


Q ss_pred             HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601          308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD  378 (418)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  378 (418)
                      ..|+.+++++                     |+++|++++.+|..|.||||+|+++|+.+++++|++.++.
T Consensus        90 ~~~~~~~v~~---------------------Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          90 LTDNAECLKL---------------------LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccc---------------------ccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            7666655554                     6777778888888888888888888888888888887654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2e-22  Score=179.81  Aligned_cols=141  Identities=22%  Similarity=0.224  Sum_probs=102.7

Q ss_pred             hhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCH-------HHHHHHHhcccCCCCcc
Q 048601          156 SAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRT-------EEISSLVRMKEYESLDC  228 (418)
Q Consensus       156 ~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~-------~~v~~Ll~~~~~~~~~~  228 (418)
                      +..+.|+||+|+.  .|+.++|++|+++|++++.    +|..|+||||.|+..++.       ++++++.+     ....
T Consensus       104 D~~G~T~LH~Aa~--~g~~~~v~~Ll~~gad~~~----~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-----~~~~  172 (301)
T d1sw6a_         104 DEHGNTPLHWLTS--IANLELVKHLVKHGSNRLY----GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-----CLIL  172 (301)
T ss_dssp             STTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTB----CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-----GGGE
T ss_pred             CCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCc----CCcccccHHHHhhhcccchhhhhHHHHHHHHhh-----hhhh
Confidence            3566777777777  7777888887777777776    777777888777765541       33333321     3345


Q ss_pred             CCCCCCcHHHHHHHcCC----HHH--------HHHHHHcCC-------------------------------------CC
Q 048601          229 RDKEGRTPLHLAVNKTS----IGC--------AKVLLESGA-------------------------------------DK  259 (418)
Q Consensus       229 ~~~~~~t~L~~A~~~~~----~~~--------v~~Ll~~~~-------------------------------------~~  259 (418)
                      .|..|+||||+++..+.    ..+        +.++.+.+.                                     .+
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  252 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCc
Confidence            66777778777765433    222        233333221                                     16


Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601          260 EAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR  307 (418)
Q Consensus       260 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  307 (418)
                      |.+|..|+||||+|++.|+.++|++|+++|++++.+|..|+|||++|+
T Consensus       253 n~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            788999999999999999999999999999999999999999999985

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=6.6e-13  Score=102.65  Aligned_cols=87  Identities=28%  Similarity=0.372  Sum_probs=74.0

Q ss_pred             cccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCC
Q 048601            3 RLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFP   81 (418)
Q Consensus         3 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~   81 (418)
                      .||.++|. +|.|..+++.++++.++|+|. +..+||||++||+|.+|.|+|..|+|.|.+...+.+.+.....      
T Consensus        17 ~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~-s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~~------   89 (152)
T d1wica_          17 PLLHISPAEELYFGSIESGEKKTLIVLTNV-TKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT------   89 (152)
T ss_dssp             SSBCBBSSSCBCCCCSSSSCCCEEEEEEBC-SSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC------
T ss_pred             CeEEEcCCCCeEeCCCCCCeEEEEEEEECC-CCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCCc------
Confidence            48999996 799999999999999999999 6679999999999999999999999999999999998865432      


Q ss_pred             CCCchHHHHHHhccC
Q 048601           82 RSPSDRFLIKATVFG   96 (418)
Q Consensus        82 ~~~~~~~l~~a~~~~   96 (418)
                      ....+.|++.+....
T Consensus        90 ~~~kdKFli~~~~v~  104 (152)
T d1wica_          90 VSAQDRFLIMAAEME  104 (152)
T ss_dssp             CCSSCCEEEEEEECC
T ss_pred             ccCCCcEEEEEEEeC
Confidence            223466777666553

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.26  E-value=3.3e-12  Score=94.89  Aligned_cols=89  Identities=15%  Similarity=0.281  Sum_probs=76.4

Q ss_pred             ccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCC
Q 048601            4 LLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPR   82 (418)
Q Consensus         4 l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~   82 (418)
                      .|+++|+ +|.|..++++.+.+.++++|. +..++|||++||+|.+|.|+|+.|+|.|.++..+.+.+++....+.   .
T Consensus         6 ~l~i~P~~~L~F~~p~~~~~~~~l~l~N~-s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~~~~~~~~~---~   81 (124)
T d1grwa_           6 DIQTQPGTKIVFNAPYDDKHTYHIKVINS-SARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQE---D   81 (124)
T ss_dssp             CEEEESSSCEEEESCCSSCEEEEEEEEEC-SSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECCCCGGGS---C
T ss_pred             ceEECCCCeEEEecCCCcEEEEEEEEECC-CCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEEecCCCCCc---c
Confidence            5889994 799999999999999999999 6779999999999999999999999999999999999987653322   2


Q ss_pred             CCchHHHHHHhccC
Q 048601           83 SPSDRFLIKATVFG   96 (418)
Q Consensus        83 ~~~~~~l~~a~~~~   96 (418)
                      ...+.|++.+....
T Consensus        82 ~~~dkF~v~~~~~p   95 (124)
T d1grwa_          82 TNNDRITVEWTNTP   95 (124)
T ss_dssp             CTTCEEEEEEEECC
T ss_pred             cCCceEEEEEEECC
Confidence            34578888777554

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.07  E-value=1.6e-10  Score=83.45  Aligned_cols=94  Identities=19%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             ccccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCCC
Q 048601            4 LLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRS   83 (418)
Q Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~~   83 (418)
                      ||.++|.++.|..+.+   .+.++|+|. +..++|||++||+|.+|.|+|..|+|.|.....+.+.++.+.        .
T Consensus         3 ~L~i~P~~l~F~~~~g---~~~~~l~N~-s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~~~~~--------~   70 (109)
T d1m1sa_           3 MINVDPPTGNYPATGG---NSTHNITSE-SDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPGP--------P   70 (109)
T ss_dssp             SEEEESSEEEECTTCE---EEEEEEEEC-SSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSCC--------S
T ss_pred             eEEEeCCEEEeecCCC---cEEEEEECC-CCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEeCCCC--------C
Confidence            7999999999986644   568999999 777999999999999999999999999999999999987653        1


Q ss_pred             CchHHHHHHhccC-CccccccccccCC
Q 048601           84 PSDRFLIKATVFG-SADSVNSLCVTLP  109 (418)
Q Consensus        84 ~~~~~l~~a~~~~-~~~~~~~l~~~~~  109 (418)
                      ..++|++.+.... +..+...+|....
T Consensus        71 ~~DKf~I~~~~~~~~~~d~~~~fk~~~   97 (109)
T d1m1sa_          71 KEDKIVIQYAEVPAEETDPMAPFKAGA   97 (109)
T ss_dssp             CEEEEEEEEEEECTTCCCTTHHHHTTC
T ss_pred             CCCEEEEEEEECCCCCcCHHHHHhcCC
Confidence            2466776666653 3345566654433

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.02  E-value=1.8e-10  Score=82.44  Aligned_cols=93  Identities=14%  Similarity=0.291  Sum_probs=73.4

Q ss_pred             cccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCCCC
Q 048601            5 LAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSP   84 (418)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~~~   84 (418)
                      |.++|.++.|.-.   ..++.++|+|. +..++|||++||+|.+|.|+|..|+|.|.....+++.++++.        ..
T Consensus         1 l~~dP~~~~f~~~---~g~~~~~l~N~-s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~~~~~--------~~   68 (107)
T d1rowa_           1 LTADPPACTVPAA---GVSSTHKLVNG-GAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGA--------PK   68 (107)
T ss_dssp             CEEESSSEEEETT---CEEEEEEEEEC-SSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSCC--------CE
T ss_pred             CeeCCCcceeeCC---CCeEEEEEEcC-CCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEeCCCC--------CC
Confidence            5789999988744   35679999999 777999999999999999999999999999999999887653        12


Q ss_pred             chHHHHHHhccC-CccccccccccCC
Q 048601           85 SDRFLIKATVFG-SADSVNSLCVTLP  109 (418)
Q Consensus        85 ~~~~l~~a~~~~-~~~~~~~l~~~~~  109 (418)
                      .|.|++.++... +..+...++....
T Consensus        69 ~DKf~I~~~~~~~~~~d~~~~fk~~~   94 (107)
T d1rowa_          69 EDKLVVHFASAPADATDAQAAFVAVA   94 (107)
T ss_dssp             EEEEEEEEEECCTTCSCHHHHHTTCC
T ss_pred             CCEEEEEEEECCCCCcCHHHHhhcCC
Confidence            467777666653 4456666665543