Citrus Sinensis ID: 048608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MEKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVIELEYLDDKVLEEMLESEDEKKERKKD
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHccccccccccccccccHHHHccccccccEEEEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHcccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccHcccccccccccccccccccccccccEEEEccccHHHHHHHccccHHHHHHccc
Coil and Loop (DISEMBL)
mekpskgkerqEKEEKRREEVRyrgvrrrpwgkfaaeirdpsrqgARLWLGTFETAEEAARAYDRAAFNMRGhlailnfpneyysqvmgyagphrlssssssssvsserfekggssssgqsqRQVIELEYLDDKVLEEMLESEDEKKERKKD
Flexible Loop (DISEMBL)
mekpskgkerqekeekrreevryrgvrrrpwgkfaaeirdpsrqgaRLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFekggssssgqsqrqvIELEYLDDKVleemlesedekkerkkd
Low Complexity Region (SEG)
MEKPSkgkerqekeekrreevryrgvrrrPWGKFAAEIRDPSRQGARLWLGTFETaeeaaraydraaFNMRGHLAILNFPNEYYSQVMGYAGPHRLssssssssvssERFEKggssssgqsqrqVIELEYLDDKVleemlesedekkerkkd
Disordered region (IsUnstruct)
***************************RRPWGKFAAEIRD**RQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNEYYSQVMGYA*************************************************************
Disordered Region (DISOPRED)
*************************VRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNE**********************************************EYLDDKVLE***************
Disordered Region (DISEMBL)
**********************YRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGP*****************************RQVIELEYLDDKVLEEML************
Disordered Region (DISPRO)
******************EEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNE**************************************SQRQVIELEYLDDKVLEEMLESE*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVIELEYLDDKVLEEMLESEDEKKERKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q9LTC5	139	Ethylene-responsive trans	yes	no	0.809	0.884	0.664	2e-40
Q9LSX0	131	Ethylene-responsive trans	no	no	0.684	0.793	0.547	2e-25
O04681	161	Pathogenesis-related gene	N/A	no	0.638	0.602	0.57	2e-24
O80338	243	Ethylene-responsive trans	no	no	0.598	0.374	0.587	7e-24
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.519	0.280	0.632	1e-23
O80337	268	Ethylene-responsive trans	no	no	0.381	0.216	0.810	2e-23
Q8VY90	221	Ethylene-responsive trans	no	no	0.486	0.334	0.607	3e-23
Q40478	291	Ethylene-responsive trans	N/A	no	0.421	0.219	0.734	3e-23
O80341	300	Ethylene-responsive trans	no	no	0.493	0.25	0.65	4e-23
Q8LDC8	218	Ethylene-responsive trans	no	no	0.434	0.302	0.742	5e-23

>sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=1 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 100/128 (78%), Gaps = 5/128 (3%)

Query: 20  EVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNF 79
           + R+RGVRRRPWGKFAAEIRDPSR GARLWLGTFETAEEAARAYDRAAFN+RGHLAILNF
Sbjct: 17  QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNF 76

Query: 80  PNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVIELEYLDDKVLEEM 139
           PNEYY ++  Y+          +SS SS       ++ S Q+QR+V E EYLDDKVLEE+
Sbjct: 77  PNEYYPRMDDYS-----LRPPYASSSSSSSSGSTSTNVSRQNQREVFEFEYLDDKVLEEL 131

Query: 140 LESEDEKK 147
           L+SE+ K+
Sbjct: 132 LDSEERKR 139

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX0|ERF96_ARATH Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 78/117 (66%), Gaps = 13/117 (11%)

Query: 19  EEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILN 78
           E  +YRGVRRRPWGK+AAEIRD  + G R+WLGTF+TAEEAARAYD+AA++MRG  AILN
Sbjct: 11  EHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILN 70

Query: 79  FPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVIELEYLDDKV 135
           FP+EY             +  S  SS ++       S+S+  S RQV E EYLDD V
Sbjct: 71  FPHEY-------------NMGSGVSSSTAMAGSSSASASASSSSRQVFEFEYLDDSV 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 3/100 (3%)

Query: 22  RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPN 81
           +YRGVRRRPWGK+AAEIRD +R GAR+WLGTFETAEEAA AYDRAAF MRG  A+LNFP+
Sbjct: 58  KYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPS 117

Query: 82  EYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQS 121
           E    V       +LS  S+S + ++         SSG +
Sbjct: 118 EI---VNASVSVDKLSLCSNSYTTNNNSDSSLNEVSSGTN 154

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 66/97 (68%), Gaps = 6/97 (6%)

Query: 2   EKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAAR 61
           EKP K     E   K +    YRGVR+RPWGKFAAEIRDP++ GAR+WLGTFETAE+AA 
Sbjct: 99  EKPKKAIPVTETAVKAK---HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAL 155

Query: 62  AYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSS 98
           AYD AAF MRG  A+LNFP    S   G   P R++S
Sbjct: 156 AYDIAAFRMRGSRALLNFPLRVNS---GEPDPVRITS 189

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query: 4   PSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAY 63
           P K +  Q+ E    E+  YRGVR+RPWGKFAAEIRDP+R+G R+WLGTF+TA EAA+AY
Sbjct: 119 PVKQEVVQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAY 178

Query: 64  DRAAFNMRGHLAILNFPNE 82
           DRAA+ +RG  AI+NFP E
Sbjct: 179 DRAAYKLRGSKAIVNFPLE 197

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 53/58 (91%)

Query: 23  YRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFP 80
           YRGVR+RPWGKFAAEIRDP++ GAR+WLGTFETAE+AA AYDRAAF MRG  A+LNFP
Sbjct: 148 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 60/79 (75%), Gaps = 5/79 (6%)

Query: 4   PSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAY 63
           P+     QE +++      YRGVRRRPWGK+AAEIRDP+++G R+WLGTF+TA EAAR Y
Sbjct: 58  PTTAPVVQENDQRH-----YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGY 112

Query: 64  DRAAFNMRGHLAILNFPNE 82
           D+AAF +RG  AILNFP E
Sbjct: 113 DKAAFKLRGSKAILNFPLE 131

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%)

Query: 19  EEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILN 78
           E+  YRGVR+RPWGKFAAEIRDP+R+G R+WLGTF+TA EAA+AYDRAAF +RG  AI+N
Sbjct: 141 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVN 200

Query: 79  FPNE 82
           FP E
Sbjct: 201 FPLE 204

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 5/80 (6%)

Query: 3   KPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARA 62
           KP   K   E+E+K      YRGVR+RPWGKFAAEIRDP+++G+R+WLGTF+TA EAARA
Sbjct: 141 KPEVTKPVSEEEKKH-----YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARA 195

Query: 63  YDRAAFNMRGHLAILNFPNE 82
           YD AAF +RG  AILNFP E
Sbjct: 196 YDEAAFRLRGSKAILNFPLE 215

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 55/66 (83%)

Query: 17  RREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAI 76
           R+ E  YRGVRRRPWGKFAAEIRD +R G R+WLGTFE+AEEAA AYD+AAF+MRG  AI
Sbjct: 76  RKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAI 135

Query: 77  LNFPNE 82
           LNF  E
Sbjct: 136 LNFSAE 141

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
224107871	148	AP2/ERF domain-containing transcription	0.973	1.0	0.730	1e-45
356574758	134	PREDICTED: ethylene-responsive transcrip	0.789	0.895	0.642	1e-40
42565130	139	ethylene-responsive transcription factor	0.809	0.884	0.664	1e-38
356533783	141	PREDICTED: ethylene-responsive transcrip	0.894	0.964	0.625	6e-38
225433059	215	PREDICTED: ethylene-responsive transcrip	0.940	0.665	0.718	1e-37
147774120	152	hypothetical protein VITISV_032916 [Viti	0.967	0.967	0.707	3e-37
356536641	137	PREDICTED: ethylene-responsive transcrip	0.763	0.846	0.635	4e-36
297744133	238	unnamed protein product [Vitis vinifera]	0.953	0.609	0.518	2e-35
224062151	142	AP2/ERF domain-containing transcription	0.901	0.964	0.587	2e-35
356556169	132	PREDICTED: ethylene-responsive transcrip	0.822	0.946	0.580	2e-34

>gi|224107871|ref|XP_002314634.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222863674|gb|EEF00805.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 129/152 (84%), Gaps = 4/152 (2%)

Query: 1   MEKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAA 60
           ME+P KGKE   KE K REEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTF+TAEEAA
Sbjct: 1   MEEPDKGKE---KELKGREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDTAEEAA 57

Query: 61  RAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQ 120
           RAYDRAAF+MRGHLAILNFPN+Y SQ +G +      SSSSS   +SE F++G SSS+GQ
Sbjct: 58  RAYDRAAFSMRGHLAILNFPNDYLSQAIGSSPRRPPVSSSSSDVGASESFQRGSSSSAGQ 117

Query: 121 SQRQVIELEYLDDKVLEEMLESEDEKKERKKD 152
             +QVIE EYLDDK+LEE+LE+E+EKK+R++D
Sbjct: 118 G-KQVIEFEYLDDKILEELLETEEEKKKRQQD 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574758|ref|XP_003555512.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 104/137 (75%), Gaps = 17/137 (12%)

Query: 18  REEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAIL 77
           +EEVRYRGVRRRPWGK+AAEIRDPS+QG+RLWLGTF+TAEEAARAYDRAAFN+RGHLAIL
Sbjct: 13  KEEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAIL 72

Query: 78  NFPNEYYSQVMGYAG-PHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVIELEYLDDKVL 136
           NFP+EYYSQ+ G    P  L++                SSSSG  QR V E+  LDDKVL
Sbjct: 73  NFPSEYYSQIRGSPPYPPHLATP---------------SSSSGAQQRPVFEIPCLDDKVL 117

Query: 137 EEML-ESEDEKKERKKD 152
           E++L +SE+ KK+ K D
Sbjct: 118 EDLLGQSEEHKKKNKGD 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565130|ref|NP_188964.2| ethylene-responsive transcription factor ERF098 [Arabidopsis thaliana] gi|75274087|sp|Q9LTC5.1|ERF98_ARATH RecName: Full=Ethylene-responsive transcription factor ERF098 gi|7939533|dbj|BAA95736.1| Nicotiana EREBP-3-like protein [Arabidopsis thaliana] gi|34221729|emb|CAE45639.1| putative ethylene responsive element binding protein [Arabidopsis thaliana] gi|332643216|gb|AEE76737.1| ethylene-responsive transcription factor ERF098 [Arabidopsis thaliana]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 100/128 (78%), Gaps = 5/128 (3%)

Query: 20  EVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNF 79
           + R+RGVRRRPWGKFAAEIRDPSR GARLWLGTFETAEEAARAYDRAAFN+RGHLAILNF
Sbjct: 17  QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNF 76

Query: 80  PNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVIELEYLDDKVLEEM 139
           PNEYY ++  Y+          +SS SS       ++ S Q+QR+V E EYLDDKVLEE+
Sbjct: 77  PNEYYPRMDDYS-----LRPPYASSSSSSSSGSTSTNVSRQNQREVFEFEYLDDKVLEEL 131

Query: 140 LESEDEKK 147
           L+SE+ K+
Sbjct: 132 LDSEERKR 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533783|ref|XP_003535438.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 90/144 (62%), Positives = 111/144 (77%), Gaps = 8/144 (5%)

Query: 9   ERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAF 68
           E Q+ + + +EEVR+RGVRRRPWGK+AAEIRDPS+QG+RLWLGTF+TAEEAARAYDRAAF
Sbjct: 3   EHQKGKLQGKEEVRFRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAF 62

Query: 69  NMRGHLAILNFPNEYYSQVMGYAG-PHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVIE 127
           N+RGHLAILNFP+EYYSQ+ G    P  L++ SSSS  S        S+SS   QR V E
Sbjct: 63  NLRGHLAILNFPSEYYSQIRGSPPYPPHLATPSSSSHASE-------STSSAAQQRHVFE 115

Query: 128 LEYLDDKVLEEMLESEDEKKERKK 151
           +  LDDKVLE++L   +E K++KK
Sbjct: 116 IPCLDDKVLEDLLGLSEEHKKKKK 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433059|ref|XP_002281036.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Vitis vinifera]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 122/153 (79%), Gaps = 10/153 (6%)

Query: 1   MEKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAA 60
           ME  SKG E+QE+E K +EEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTF+ AE+AA
Sbjct: 1   MEDHSKGNEKQEQEGKEKEEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDRAEDAA 60

Query: 61  RAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVS-----SERFEKGGS 115
           RAYDRAAFN+RGHLAILNFPNEYYS++M   G HR   S SSSS S         E GG 
Sbjct: 61  RAYDRAAFNLRGHLAILNFPNEYYSEIM---GSHRPPPSPSSSSSSSSSGPCRSLEMGG- 116

Query: 116 SSSGQSQRQVIELEYLDDKVLEEMLESEDEKKE 148
           SSSGQ ++QVIE E LDD VLEE+L SEDEKK+
Sbjct: 117 SSSGQ-EKQVIEFECLDDTVLEELLGSEDEKKK 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774120|emb|CAN73824.1| hypothetical protein VITISV_032916 [Vitis vinifera]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/157 (70%), Positives = 124/157 (78%), Gaps = 10/157 (6%)

Query: 1   MEKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAA 60
           ME  SKG E+QE+E K +EEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTF+ AE+AA
Sbjct: 1   MEDHSKGNEKQEQEGKEKEEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDRAEDAA 60

Query: 61  RAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVS-----SERFEKGGS 115
           RAYDRAAFN+RGHLAILNFPNEYYS++M   G HR   S SSSS S         E GG 
Sbjct: 61  RAYDRAAFNLRGHLAILNFPNEYYSEIM---GSHRPPPSPSSSSSSSSSGPCRSLEMGG- 116

Query: 116 SSSGQSQRQVIELEYLDDKVLEEMLESEDEKKERKKD 152
           SSSGQ ++QVIE E LDD VLEE+L SEDEKK+  K+
Sbjct: 117 SSSGQ-EKQVIEFECLDDTVLEELLGSEDEKKKGAKN 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536641|ref|XP_003536845.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 94/129 (72%), Gaps = 13/129 (10%)

Query: 8   KERQEK-EEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRA 66
           KE+ +K +EK R+EVRYRGVRRRPWGK+AAEIRDPS+QG+RLWLGTFET EEAARAYD A
Sbjct: 6   KEKHDKLKEKGRKEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFETGEEAARAYDHA 65

Query: 67  AFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQVI 126
           AF MRGH+AILNFPNEY+S        H +   S + + SS      G    G  QRQV 
Sbjct: 66  AFTMRGHVAILNFPNEYHS--------HHVRGYSPNLASSSSSITHAG----GGQQRQVF 113

Query: 127 ELEYLDDKV 135
           E EYLDDKV
Sbjct: 114 EFEYLDDKV 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744133|emb|CBI37103.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 103/162 (63%), Gaps = 17/162 (10%)

Query: 1   MEKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAA 60
           ME+  KGK ++EK E     +RYRGVRRRPWGKFAAEIRD +RQGARLWLGTF TAEEAA
Sbjct: 80  MEEHPKGKCKEEKGE-----IRYRGVRRRPWGKFAAEIRDSTRQGARLWLGTFTTAEEAA 134

Query: 61  RAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSS-----------SSSSSSVSSER 109
           RAYD+AA+ MRGHLAILNFP E + QV   A   R S                       
Sbjct: 135 RAYDKAAYAMRGHLAILNFPEE-HQQVASPANTERTSDVHEKLVFEFEYLDDKLLEDLLE 193

Query: 110 FEKGGSSSSGQSQRQVIELEYLDDKVLEEMLESEDEKKERKK 151
             +   + +  +Q QV E EYLDDKVLE++LE E+++  +K+
Sbjct: 194 TSENPDNDTVTNQNQVFEFEYLDDKVLEDLLECEEKETTQKR 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062151|ref|XP_002300780.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842506|gb|EEE80053.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 105/143 (73%), Gaps = 6/143 (4%)

Query: 6   KGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDR 65
           +G++  +K+EKRRE   YRG+RRRPWGKFAAEIRDP+R G R WLGTF+TAEEAARAYDR
Sbjct: 5   QGEKNTKKQEKRRENA-YRGIRRRPWGKFAAEIRDPTRNGTRRWLGTFDTAEEAARAYDR 63

Query: 66  AAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQSQRQV 125
           AAF  RGHLAILNFPNEY  Q          SSS S+ +  S  +    SS++GQ   +V
Sbjct: 64  AAFAFRGHLAILNFPNEYQHQETNSTMSFASSSSFSTENPLS--YGNEVSSTNGQ---EV 118

Query: 126 IELEYLDDKVLEEMLESEDEKKE 148
           IE EYLD+K+LEE+LE++D  ++
Sbjct: 119 IEFEYLDNKLLEELLETDDHSRQ 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556169|ref|XP_003546399.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 102/143 (71%), Gaps = 18/143 (12%)

Query: 1   MEKPSKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAA 60
           ME+  KG   ++ +EK  EEV+YRGVRRRPWGKF AEIRDP++   R WLGTF+TAEEAA
Sbjct: 1   MEEAHKG---EQDKEKGGEEVKYRGVRRRPWGKFGAEIRDPTKSTGRQWLGTFDTAEEAA 57

Query: 61  RAYDRAAFNMRGHLAILNFPNEYYSQVMGYAGPHRLSSSSSSSSVSSERFEKGGSSSSGQ 120
           RAYDRAA  +RG LAILNFP+EYY+          L   SS+ S+SS      GSS + Q
Sbjct: 58  RAYDRAAIELRGALAILNFPDEYYAH---------LPFVSSNPSISS-----NGSSYAAQ 103

Query: 121 SQRQVIELEYLDDKVLEEMLESE 143
            Q++VIE E LD+KVLE++LESE
Sbjct: 104 -QKEVIEFECLDNKVLEDLLESE 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.651	0.712	0.481	1e-20
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.427	0.467	0.538	2.9e-17
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.355	0.406	0.537	2.2e-15
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.335	0.190	0.607	3.4e-13
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.335	0.209	0.607	3.4e-13
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.348	0.187	0.603	4.8e-13
TAIR|locus:2176511	131	AT5G43410 [Arabidopsis thalian	0.611	0.709	0.377	1.2e-12
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.335	0.253	0.549	1.9e-12
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.348	0.176	0.566	1.9e-12
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.348	0.239	0.547	3.1e-12

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 52/108 (48%), Positives = 58/108 (53%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFPNEYYSQVMG 89
             PWGKFAAEIRDPSR GARLWLGTFET            FN+RGHLAILNFPNEYY ++  
Sbjct:    27 PWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNEYYPRMDD 86

Query:    90 YA--GPHRLXXXXXXXXXXXERFEKXXXXXXXXXXXXVIELEYLDDKV 135
             Y+   P+                 +            V E EYLDDKV
Sbjct:    87 YSLRPPYASSSSSSSSGSTSTNVSRQNQRE-------VFEFEYLDDKV 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 35/65 (53%), Positives = 39/65 (60%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFPNEYYSQVMG 89
             PWGK+AAEIRD +R GAR+WLGTF T            F MRG  AILNFP+EY     G
Sbjct:    21 PWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHEYQMMKDG 80

Query:    90 YAGPH 94
               G H
Sbjct:    81 PNGSH 85

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 29/54 (53%), Positives = 36/54 (66%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFPNEY 83
             PWGK+AAEIRD  + G R+WLGTF+T            ++MRG  AILNFP+EY
Sbjct:    27 PWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHEY 80

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/51 (60%), Positives = 35/51 (68%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFP 80
             PWGKFAAEIRDP++ GAR+WLGTFET            F MRG  A+LNFP
Sbjct:   155 PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/51 (60%), Positives = 35/51 (68%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFP 80
             PWGKFAAEIRDP++ GAR+WLGTFET            F MRG  A+LNFP
Sbjct:   124 PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 32/53 (60%), Positives = 36/53 (67%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFPNE 82
             PWGKFAAEIRDP+R+G R+WLGTFET            F +RG  AILNFP E
Sbjct:   144 PWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLE 196

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2176511 AT5G43410 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 40/106 (37%), Positives = 48/106 (45%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFPNEYYSQVMG 89
             PWGK+AAEIRD  + G R+WLGTF+T            ++MRG  AILNFP+EY    MG
Sbjct:    22 PWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYN---MG 78

Query:    90 YAGPHRLXXXXXXXXXXXERFEKXXXXXXXXXXXXVIELEYLDDKV 135
              +G                                V E EYLDD V
Sbjct:    79 -SG---------VSSSTAMAGSSSASASASSSSRQVFEFEYLDDSV 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFP 80
             PWGKFAAEIRDP+++G+R+WLGTFE+            F +RG  A+LNFP
Sbjct:   114 PWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFPNE 82
             PWGKFAAEIRDP+++G+R+WLGTF+T            F +RG  AILNFP E
Sbjct:   163 PWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 29/53 (54%), Positives = 36/53 (67%)

Query:    30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFPNE 82
             PWGK+AAEIRDP+++G R+WLGTF+T            F +RG  AILNFP E
Sbjct:    79 PWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTC5	ERF98_ARATH	No assigned EC number	0.6640	0.8092	0.8848	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G23230	ethylene-responsive factor, putative; encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. ; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (139 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	PFT1	PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator; Encodes a nuclear protein t [...] (836 aa)					•				0.932
	AT4G07700	transposable element gene; gypsy-like retrotransposon family (Athila), has a 3.9e-13 P-value bl [...] (843 aa)							•		0.679
	AT2G37430	zinc finger (C2H2 type) family protein (ZAT11); zinc finger (C2H2 type) family protein (ZAT11); [...] (178 aa)				•					0.573
	AT2G22880	VQ motif-containing protein; VQ motif-containing protein; FUNCTIONS IN- molecular_function unkn [...] (114 aa)				•					0.556
	AT1G22810	AP2 domain-containing transcription factor, putative; encodes a member of the DREB subfamily A- [...] (144 aa)				•				•	0.526
	AT2G32030	GCN5-related N-acetyltransferase (GNAT) family protein; GCN5-related N-acetyltransferase (GNAT) [...] (188 aa)				•					0.504
	WRKY40	WRKY40; transcription factor; Pathogen-induced transcription factor. Binds W-box sequences in v [...] (302 aa)				•					0.502
	AtPP2-B13	AtPP2-B13 (Phloem protein 2-B13); carbohydrate binding; Phloem protein 2-B13 (AtPP2-B13); FUNCT [...] (284 aa)				•					0.501
	AT3G02840	immediate-early fungal elicitor family protein; immediate-early fungal elicitor family protein; [...] (379 aa)				•					0.495
	ERF11	ERF11 (ERF DOMAIN PROTEIN 11); DNA binding / transcription factor/ transcription repressor; enc [...] (166 aa)				•			•	•	0.493

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-29
pfam00847	53	pfam00847, AP2, AP2 domain	7e-11

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  106 bits (266), Expect = 3e-31
 Identities = 47/65 (72%), Positives = 53/65 (81%), Gaps = 1/65 (1%)

Query: 22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPN 81
          +YRGVR+RPWGK+ AEIRDPS +G R+WLGTF+TAEEAARAYDRAAF  RG  A LNFPN
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 82 EYYSQ 86
            Y  
Sbjct: 60 SLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  101 bits (253), Expect = 3e-29
 Identities = 44/60 (73%), Positives = 52/60 (86%), Gaps = 1/60 (1%)

Query: 22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPN 81
          +YRGVR+RPWGK+ AEIRDPS  G R+WLGTF+TAEEAARAYDRAA  +RG  A+LNFP+
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 53.8 bits (130), Expect = 7e-11
 Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 22 RYRGVRRRP-WGKFAAEIRDPS-RQGARLWLGTFETAEEAARAYDRAAFNMRG 72
           Y+GVR    WG++ AEIRDP  ++  R  LGTF T EEAARA   A   +RG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.87
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.87
PHA00280	121	putative NHN endonuclease	99.72
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.35
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	89.23

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.87  E-value=2.3e-22  Score=134.26  Aligned_cols=63  Identities=75%  Similarity=1.330  Sum_probs=59.6

Q ss_pred             ceeEeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCchhh
Q 048608           22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNEYYS   85 (152)
Q Consensus        22 ~yrGV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~a~~Nfp~~~y~   85 (152)
                      +|+||+++++|+|.|+|+++. +|+++|||+|+|+||||.|||.++++++|..+.+|||.++|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999988999999999976 479999999999999999999999999999999999999986

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.87  E-value=2.2e-22  Score=132.89  Aligned_cols=61  Identities=72%  Similarity=1.310  Sum_probs=57.0

Q ss_pred             cceeEeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 048608           21 VRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNE   82 (152)
Q Consensus        21 S~yrGV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~a~~Nfp~~   82 (152)
                      |+|+||+++++|+|+|+|+++. .|+++|||+|+|+||||.|||.++++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999999954 289999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.72  E-value=8.1e-18  Score=125.94  Aligned_cols=71  Identities=10%  Similarity=0.141  Sum_probs=64.1

Q ss_pred             CCCCcchhhhhhhhcCCCCcceeEeEECC-CCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 048608            2 EKPSKGKERQEKEEKRREEVRYRGVRRRP-WGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAI   76 (152)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~S~yrGV~~~~-~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~a~   76 (152)
                      +..+..+|.+|+..+++|+|+|+||++.+ .|||.|+|.+   +||+++||.|+|+|+|+.||+ ++.++||++|.
T Consensus        48 r~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         48 RLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            44577899999999999999999999754 6999999999   899999999999999999997 77899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.35  E-value=2e-12  Score=83.26  Aligned_cols=53  Identities=36%  Similarity=0.486  Sum_probs=46.0

Q ss_pred             cceeEeEECC-CCcEEEEEeCCCCCC--eEEecCCCCCHHHHHHHHHHHHHhhcCC
Q 048608           21 VRYRGVRRRP-WGKFAAEIRDPSRQG--ARLWLGTFETAEEAARAYDRAAFNMRGH   73 (152)
Q Consensus        21 S~yrGV~~~~-~gkw~A~I~~~~~~g--k~~~LGtF~t~EeAA~AYD~aa~~~~G~   73 (152)
                      |+|+||++.+ .++|.|+|+++..+|  +.++||.|++++||++|++.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999655 699999999854443  9999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=89.23  E-value=1.4  Score=27.06  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             cEEEEEe--CC-CCCCeEEecCCCCCHHHHHHHHHHHHHhh
Q 048608           33 KFAAEIR--DP-SRQGARLWLGTFETAEEAARAYDRAAFNM   70 (152)
Q Consensus        33 kw~A~I~--~~-~~~gk~~~LGtF~t~EeAA~AYD~aa~~~   70 (152)
                      +|...|.  ++ ..+-++++-+.|.|..||-.+...+...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  33 23337788999999999999988877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		7e-13
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		9e-13

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 35/51 (68%)
Query: 30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFP 80
          PWGKFAAEIRDP++ GAR+WLGTFET            F MRG  A+LNFP
Sbjct: 13 PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 35/51 (68%)
Query: 30 PWGKFAAEIRDPSRQGARLWLGTFETXXXXXXXXXXXXFNMRGHLAILNFP 80
          PWGKFAAEIRDP++ GAR+WLGTFET            F MRG  A+LNFP
Sbjct: 10 PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
1gcc_A	63	Ethylene responsive element binding factor 1; tran	5e-39

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  125 bits (316), Expect = 5e-39
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPN 81
           YRGVR+RPWGKFAAEIRDP++ GAR+WLGTFETAE+AA AYDRAAF MRG  A+LNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 82 E 82
           
Sbjct: 62 R 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	95.29
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.52
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	80.3

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=7.8e-27  Score=155.48  Aligned_cols=61  Identities=77%  Similarity=1.329  Sum_probs=58.4

Q ss_pred             ceeEeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 048608           22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNE   82 (152)
Q Consensus        22 ~yrGV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~a~~Nfp~~   82 (152)
                      +|+||+++++|||.|+|+++.++|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999998899999999999987789999999999999999999999999999999999975

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=95.29  E-value=0.00033  Score=53.33  Aligned_cols=55  Identities=5%  Similarity=-0.054  Sum_probs=38.8

Q ss_pred             CcchhhhhhhhcCCCCcceeEeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHH
Q 048608            5 SKGKERQEKEEKRREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYD   64 (152)
Q Consensus         5 ~~~~~~~~~~~~~~~~S~yrGV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD   64 (152)
                      +..+|.+++.......+ .+||.....++|.|.|..   + +..+||.|+|.+|||++|.
T Consensus        92 t~~eN~~~~~~~~~~~~-~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           92 TQKINVENQMSRGTLNV-SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CHHHHHHHHHHHTCCCC-HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             CHHHHhhcccccCcccc-eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            45667777665554322 467765334678999988   3 4578999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.52  E-value=0.029  Score=38.08  Aligned_cols=28  Identities=21%  Similarity=0.194  Sum_probs=22.1

Q ss_pred             CCCcceeEeEECC-CCcEEEEEeCCCCCCeEE
Q 048608           18 REEVRYRGVRRRP-WGKFAAEIRDPSRQGARL   48 (152)
Q Consensus        18 ~~~S~yrGV~~~~-~gkw~A~I~~~~~~gk~~   48 (152)
                      ..+|+|+||++.+ .+.|.|.-.+   +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            4579999999766 5999999887   56653

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=80.30  E-value=1.7  Score=34.30  Aligned_cols=41  Identities=17%  Similarity=0.143  Sum_probs=30.6

Q ss_pred             EeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhh
Q 048608           25 GVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNM   70 (152)
Q Consensus        25 GV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~   70 (152)
                      ||+.++.|.|..+...   +|+++.+|.  |..||..+...+...+
T Consensus        15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            5777778999988755   688999996  8888877665554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-30

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (256), Expect = 2e-30
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPN 81
           YRGVR+RPWGKFAAEIRDP++ GAR+WLGTFETAE+AA AYDRAAF MRG  A+LNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 82 E 82
           
Sbjct: 62 R 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.1e-27  Score=156.86  Aligned_cols=61  Identities=77%  Similarity=1.329  Sum_probs=58.3

Q ss_pred             ceeEeEECCCCcEEEEEeCCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 048608           22 RYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFETAEEAARAYDRAAFNMRGHLAILNFPNE   82 (152)
Q Consensus        22 ~yrGV~~~~~gkw~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~a~~Nfp~~   82 (152)
                      .||||+++++|||.|+|+++..+++++|||+|+|+||||+|||.|++.++|..+.+|||++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            4999998889999999999888889999999999999999999999999999999999985