Citrus Sinensis ID: 048625

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGLNHN
Secondary Structure (PSIPRED)
cEEHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEHHEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccc
Coil and Loop (DISEMBL)
SAFFLGTVGFGIgirlgdlspgvvyglhRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGLNHN
Flexible Loop (DISEMBL)
SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKskeeklrregligglnhn
Low Complexity Region (SEG)
SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGLNHN
Disordered region (IsUnstruct)
**FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK******************
Disordered Region (DISOPRED)
SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWV***********************
Disordered Region (DISEMBL)
SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGLNHN
Disordered Region (DISPRO)
SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKE***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLRREGLIGGLNHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
224131728	402	predicted protein [Populus trichocarpa]	0.95	0.330	0.924	1e-66
224068855	400	predicted protein [Populus trichocarpa]	0.971	0.34	0.904	2e-66
296084991	478	unnamed protein product [Vitis vinifera]	0.971	0.284	0.882	9e-66
359485809	400	PREDICTED: uncharacterized protein LOC10	0.971	0.34	0.882	2e-65
255582443	399	dopamine beta-monooxygenase, putative [R	0.964	0.338	0.888	2e-65
357495381	442	Auxin-induced in root cultures protein [	0.957	0.303	0.843	3e-62
388507436	442	unknown [Medicago truncatula]	0.957	0.303	0.843	4e-62
388497076	403	unknown [Lotus japonicus]	0.971	0.337	0.808	4e-60
255641599	392	unknown [Glycine max]	0.95	0.339	0.849	5e-60
356551564	392	PREDICTED: uncharacterized protein LOC10	0.95	0.339	0.849	5e-60

>gi|224131728|ref|XP_002321163.1| predicted protein [Populus trichocarpa] gi|222861936|gb|EEE99478.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 126/133 (94%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
           AF +GTVGF IGIRLG+LSPGVVYGLHRKLGF AF  GALQTLALLFRPKTTNKFRKYWK
Sbjct: 258 AFIIGTVGFAIGIRLGELSPGVVYGLHRKLGFAAFSFGALQTLALLFRPKTTNKFRKYWK 317

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGYACVVLGVVNVFQGFEVMGE RSYAKL YCLCLSTLIGVCIALEVNSWV+FCR
Sbjct: 318 SYHHFVGYACVVLGVVNVFQGFEVMGESRSYAKLGYCLCLSTLIGVCIALEVNSWVVFCR 377

Query: 122 KSKEEKLRREGLI 134
           KSKEEKLRREGLI
Sbjct: 378 KSKEEKLRREGLI 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068855|ref|XP_002302842.1| predicted protein [Populus trichocarpa] gi|222844568|gb|EEE82115.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 126/136 (92%)

Query: 1   SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
           SA F+GTVGF IGIRLG+LSPGVVYGLHRKLGF AF  GALQTLALLFRPKTTNKFRKYW
Sbjct: 255 SALFIGTVGFAIGIRLGELSPGVVYGLHRKLGFAAFSFGALQTLALLFRPKTTNKFRKYW 314

Query: 61  KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
           KSYHHFVGYACVVLGVVNVFQG EVMGE RSYAKL YCLCLSTLIG CIALEVNSWV+FC
Sbjct: 315 KSYHHFVGYACVVLGVVNVFQGLEVMGESRSYAKLGYCLCLSTLIGACIALEVNSWVVFC 374

Query: 121 RKSKEEKLRREGLIGG 136
           RKSKEEKLRRE LIGG
Sbjct: 375 RKSKEEKLRRERLIGG 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084991|emb|CBI28406.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (649), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 127/136 (93%)

Query: 1   SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
           S FFLGTVGF IGI+LG++SPGVVYGLHRKLGF AFCLG LQTLALLFRPKTTNKFRKYW
Sbjct: 74  SGFFLGTVGFAIGIKLGEMSPGVVYGLHRKLGFGAFCLGGLQTLALLFRPKTTNKFRKYW 133

Query: 61  KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
           KSYHHFVGYACVVLGVVNVFQGFEVMG  RSYAKLAYCL L+TLIG+CIA EVNSWVIFC
Sbjct: 134 KSYHHFVGYACVVLGVVNVFQGFEVMGSSRSYAKLAYCLSLATLIGICIASEVNSWVIFC 193

Query: 121 RKSKEEKLRREGLIGG 136
           RK+KEE +RREGLIGG
Sbjct: 194 RKAKEETMRREGLIGG 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485809|ref|XP_002262661.2| PREDICTED: uncharacterized protein LOC100253083 [Vitis vinifera]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 127/136 (93%)

Query: 1   SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
           S FFLGTVGF IGI+LG++SPGVVYGLHRKLGF AFCLG LQTLALLFRPKTTNKFRKYW
Sbjct: 256 SGFFLGTVGFAIGIKLGEMSPGVVYGLHRKLGFGAFCLGGLQTLALLFRPKTTNKFRKYW 315

Query: 61  KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
           KSYHHFVGYACVVLGVVNVFQGFEVMG  RSYAKLAYCL L+TLIG+CIA EVNSWVIFC
Sbjct: 316 KSYHHFVGYACVVLGVVNVFQGFEVMGSSRSYAKLAYCLSLATLIGICIASEVNSWVIFC 375

Query: 121 RKSKEEKLRREGLIGG 136
           RK+KEE +RREGLIGG
Sbjct: 376 RKAKEETMRREGLIGG 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582443|ref|XP_002532009.1| dopamine beta-monooxygenase, putative [Ricinus communis] gi|223528340|gb|EEF30382.1| dopamine beta-monooxygenase, putative [Ricinus communis]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/135 (88%), Positives = 125/135 (92%)

Query: 1   SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
           SAF LGTVGF IGIRLG+ SPGVVY LHRKLGF  FCLGALQTLALLFRPKTTNK+RKYW
Sbjct: 255 SAFLLGTVGFAIGIRLGESSPGVVYSLHRKLGFAVFCLGALQTLALLFRPKTTNKYRKYW 314

Query: 61  KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
           KSYHHFVGYACVVLGVVNVFQGFEV+GEGRSYAKL YCLCLSTL+G  IALEVNSWVIFC
Sbjct: 315 KSYHHFVGYACVVLGVVNVFQGFEVLGEGRSYAKLGYCLCLSTLVGASIALEVNSWVIFC 374

Query: 121 RKSKEEKLRREGLIG 135
           RKSKEEK+RREGLI 
Sbjct: 375 RKSKEEKMRREGLIS 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495381|ref|XP_003617979.1| Auxin-induced in root cultures protein [Medicago truncatula] gi|355519314|gb|AET00938.1| Auxin-induced in root cultures protein [Medicago truncatula]

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/134 (84%), Positives = 121/134 (90%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
            F LGTVGFGIGI+LG ++PGV YGLHRKLG   FCLGALQTLALLFRP TTNKFRKYWK
Sbjct: 297 GFILGTVGFGIGIQLGKMTPGVEYGLHRKLGIAVFCLGALQTLALLFRPNTTNKFRKYWK 356

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGY+CVVLG VNVFQGFEV+G  RSYAKL+YCL LSTLIGV IALEVNSWVIFCR
Sbjct: 357 SYHHFVGYSCVVLGFVNVFQGFEVIGASRSYAKLSYCLGLSTLIGVSIALEVNSWVIFCR 416

Query: 122 KSKEEKLRREGLIG 135
           KSKEEK+R+EGLIG
Sbjct: 417 KSKEEKMRKEGLIG 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507436|gb|AFK41784.1| unknown [Medicago truncatula]

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 113/134 (84%), Positives = 121/134 (90%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWK 61
            F LGTVGFGIGI+LG ++PGV YGLHRKLG   FCLGALQTLALLFRP TTNKFRKYWK
Sbjct: 297 GFILGTVGFGIGIQLGKMTPGVEYGLHRKLGIAVFCLGALQTLALLFRPNTTNKFRKYWK 356

Query: 62  SYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCR 121
           SYHHFVGY+CVVLG VNVFQGFEV+G  RSYAKL+YCL LSTLIGV IALEVNSWVIFCR
Sbjct: 357 SYHHFVGYSCVVLGFVNVFQGFEVIGASRSYAKLSYCLGLSTLIGVSIALEVNSWVIFCR 416

Query: 122 KSKEEKLRREGLIG 135
           KSKEEK+R+EGLIG
Sbjct: 417 KSKEEKMRKEGLIG 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497076|gb|AFK36604.1| unknown [Lotus japonicus]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/136 (80%), Positives = 120/136 (88%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           F LGTVGF IGIRLG+LSPGV Y LHRKLG   FCLGA+QTLALLFRP   N+FRKYWKS
Sbjct: 260 FILGTVGFAIGIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKS 319

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGY+CVVLG VNVFQGFEVMG  RSYAKL+YCL LST+IGVCIALEVNSWV+FCRK
Sbjct: 320 YHHFVGYSCVVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTMIGVCIALEVNSWVVFCRK 379

Query: 123 SKEEKLRREGLIGGLN 138
           SKE+K+RREGLIG  +
Sbjct: 380 SKEDKMRREGLIGSSD 395

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641599|gb|ACU21072.1| unknown [Glycine max]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 113/133 (84%), Positives = 118/133 (88%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           F LGTVGF IGIRLG LSPGV Y LHRKLG   FCLGALQTLALLFRP T NKFRKYWKS
Sbjct: 257 FVLGTVGFVIGIRLGQLSPGVEYRLHRKLGMAVFCLGALQTLALLFRPNTRNKFRKYWKS 316

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGY+CVVLG VNVFQGFEVMG  RSYAKL YCL LSTLIG+CIALEVNSWV+FCRK
Sbjct: 317 YHHFVGYSCVVLGFVNVFQGFEVMGASRSYAKLTYCLGLSTLIGLCIALEVNSWVVFCRK 376

Query: 123 SKEEKLRREGLIG 135
           SKE+K+RREGLIG
Sbjct: 377 SKEDKMRREGLIG 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551564|ref|XP_003544144.1| PREDICTED: uncharacterized protein LOC100775680 [Glycine max]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 113/133 (84%), Positives = 118/133 (88%)

Query: 3   FFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKS 62
           F LGTVGF IGIRLG LSPGV Y LHRKLG   FCLGALQTLALLFRP T NKFRKYWKS
Sbjct: 257 FVLGTVGFVIGIRLGQLSPGVEYRLHRKLGMAVFCLGALQTLALLFRPNTRNKFRKYWKS 316

Query: 63  YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122
           YHHFVGY+CVVLG VNVFQGFEVMG  RSYAKL YCL LSTLIG+CIALEVNSWV+FCRK
Sbjct: 317 YHHFVGYSCVVLGFVNVFQGFEVMGASRSYAKLTYCLGLSTLIGLCIALEVNSWVVFCRK 376

Query: 123 SKEEKLRREGLIG 135
           SKE+K+RREGLIG
Sbjct: 377 SKEDKMRREGLIG 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.964	0.334	0.777	3.6e-57
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.871	0.309	0.419	3.3e-24
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.914	0.325	0.364	8.7e-24
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.964	0.335	0.379	1e-22
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.892	0.316	0.365	1.1e-22
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.871	0.301	0.396	1.4e-22
TAIR|locus:2077690	466	AT3G59070 [Arabidopsis thalian	0.878	0.263	0.328	5.8e-15
TAIR|locus:2091097	369	AT3G07570 [Arabidopsis thalian	0.828	0.314	0.341	3e-13
TAIR|locus:2076770	398	AT3G61750 [Arabidopsis thalian	0.792	0.278	0.307	7.3e-11
FB|FBgn0032810	269	CG13077 [Drosophila melanogast	0.557	0.289	0.325	0.0003

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 105/135 (77%), Positives = 118/135 (87%)

Query:     1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
             + F LGT+GF IGI LG  SPGV YGLHR LG   F   ALQTLALLFRPKTTNKFR+YW
Sbjct:   261 TGFLLGTIGFSIGIVLGHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYW 320

Query:    61 KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
             KSYHHFVGYACVV+GVVNVFQGFEV+ EGRSYAKL YCLCLSTL+GVC+A+EVNSWV+FC
Sbjct:   321 KSYHHFVGYACVVMGVVNVFQGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWVVFC 380

Query:   121 RKSKEEKLRREGLIG 135
             RK+KEEK++R+GL G
Sbjct:   381 RKAKEEKMKRDGLTG 395

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 52/124 (41%), Positives = 76/124 (61%)

Query:     1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
             SA+ +G  G+  G++LG  S G+ Y  HR +G   F +  LQ  A+L RP+  +KFR  W
Sbjct:   263 SAYVIGVAGWATGLKLGSESKGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVW 322

Query:    61 KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
               YHH VGY+ ++LG++NVF+G  ++    +Y K AY   + TL G+ + LEV +WVI  
Sbjct:   323 NIYHHGVGYSILILGIINVFKGLSILNPKHTY-KTAYIAVIGTLGGITLLLEVVTWVIVL 381

Query:   121 -RKS 123
              RKS
Sbjct:   382 KRKS 385

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/129 (36%), Positives = 77/129 (59%)

Query:     1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
             SA+ +G  G+  G++LG+ S G+ +  HR +G   F L  +Q  A+L RPK  +K+R YW
Sbjct:   262 SAYVIGVAGWATGLKLGNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYW 321

Query:    61 KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
               YHH VGYA + LG++NVF+G  ++    +Y K AY   ++ L G+ + LE  +WV+  
Sbjct:   322 NIYHHGVGYAILTLGIINVFKGLNILKPQDTY-KTAYIAVIAVLGGIALLLEAITWVVVL 380

Query:   121 RKSKEEKLR 129
             ++     ++
Sbjct:   381 KRKSNNSMK 389

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 52/137 (37%), Positives = 75/137 (54%)

Query:     1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
             SA+ +G  G+  G++LG  SPG+ Y  HR +G   F L  +Q  A+  RPK  +K R YW
Sbjct:   261 SAYIIGVAGWATGLKLGGDSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYW 320

Query:    61 KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSW-VIF 119
               YHH +GY  ++LGVVNVF+G  ++   + + K AY   +  L  V   LE  +W V+ 
Sbjct:   321 NIYHHTIGYTIIILGVVNVFKGLGILSPKKQW-KNAYIGIIVVLAIVATLLEAFTWYVVI 379

Query:   120 CRKSKEEKLRREGLIGG 136
              R+  E K  + G   G
Sbjct:   380 KRRKLEAKTAQHGASNG 396

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 46/126 (36%), Positives = 74/126 (58%)

Query:     1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
             SA+ +G  G+  G++LG+ S G+ +  HR +G   FCL  +Q  A+  RPK  +K+R YW
Sbjct:   253 SAYIIGVAGWATGLKLGNESAGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYW 312

Query:    61 KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFC 120
               YHH VGY+ ++L VVNVF+G +++   + +   AY   +  L  V + LE  +W +  
Sbjct:   313 NIYHHTVGYSVIILAVVNVFKGLDILSPEKQWRN-AYTAIIVVLGIVAVVLEGFTWYVVI 371

Query:   121 RKSKEE 126
             ++ K E
Sbjct:   372 KRGKAE 377

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 50/126 (39%), Positives = 75/126 (59%)

Query:     1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
             S + +G  G+  GI+LG+ SPG  Y  HR LG   F    LQ  ALL RPK  +K+R YW
Sbjct:   251 SGYVIGVAGWATGIKLGNDSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTYW 310

Query:    61 KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA-LEVNSW-VI 118
               YHH VGY  ++L +VN+F+GF+++     + + AY + +   +G C+  LE  +W ++
Sbjct:   311 NVYHHTVGYTTIILSIVNIFKGFDILDPEDKW-RWAY-IGILIFLGACVLILEPLTWFIV 368

Query:   119 FCRKSK 124
               RKS+
Sbjct:   369 LRRKSR 374

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 43/131 (32%), Positives = 70/131 (53%)

Query:     1 SAFFLGTVGFGIGIRLGDLS-PGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKY 59
             + +F G +G G+G  +      G+   LH  +G   F LG LQ L+L  RP   +K+RKY
Sbjct:   262 TGYFSGLIG-GLGTAIYMARHTGMRTTLHTVIGLLLFALGFLQILSLKARPNKDHKYRKY 320

Query:    60 WKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEV----NS 115
             W  YHH +GY  +VL + N+++G  ++  G S  K+AY   +  +    + +E+      
Sbjct:   321 WNWYHHTMGYIVIVLSIYNIYKGLSILQPG-SIWKIAYTTIICCIAAFAVVMEILQFKKR 379

Query:   116 WV-IFCRKSKE 125
             W  +F +KSK+
Sbjct:   380 WARLFFKKSKD 390

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 40/117 (34%), Positives = 58/117 (49%)

Query:     1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
             + F LG  G   G+ L +         H+ LG T   +G LQ LALL RP   +K+RKYW
Sbjct:   252 TGFLLGLTGVICGLVLENRLKANNVSKHKGLGITILVMGVLQMLALLARPDKQSKYRKYW 311

Query:    61 KSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWV 117
               YHH +G   ++L + N+F G  +   G S+    Y   ++ L    I LEV  ++
Sbjct:   312 NWYHHNIGRLLIILAISNIFYGIHLAKAGTSWNG-GYGFAVAVLALTAIGLEVRKFL 367

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 7.3e-11, P = 7.3e-11
 Identities = 35/114 (30%), Positives = 53/114 (46%)

Query:     1 SAFFLGTVGFGIGIRLGD-LSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKY 59
             + F  G     +GI+L + + P +    HR +G     L  LQ LA   RP+   K R+Y
Sbjct:   259 TGFIFGLAAVILGIQLYNRIQPDIP--AHRGIGIFLLVLSTLQVLAFFARPQKETKMRRY 316

Query:    60 WKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEV 113
             W  YHH++G   +  G VN+  G  +   G    K+ Y   LS  +   + LE+
Sbjct:   317 WNWYHHWIGRISLFFGAVNIVLGIRMADNGGDGWKIGYGFVLSVTLLAFVVLEI 370

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

FB|FBgn0032810 CG13077 [Drosophila melanogaster (taxid:7227)]

 Score = 100 (40.3 bits), Expect = 0.00030, P = 0.00030
 Identities = 28/86 (32%), Positives = 47/86 (54%)

Query:    28 HRKLGFTAF--CLGALQT-LALLFRPKTTNKFRKYW-KSYHHFVGYACVVLGVVNVFQGF 83
             H +LG TAF  C+ A+ + LA LF  +          K++H+F+G+AC V+ +V  + G+
Sbjct:   163 HGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNKTFHNFLGFACFVIALVTQYYGY 222

Query:    84 EV-MGEGRS---YAKLAYCLCLSTLI 105
             +    + RS   +  L  CL L +L+
Sbjct:   223 QTGYFKSRSETDFQILMKCLTLISLV 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.146   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       140   0.00091  102 3  11 22  0.50    30
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.96u 0.15s 14.11t   Elapsed:  00:00:01
  Total cpu time:  13.96u 0.15s 14.11t   Elapsed:  00:00:01
  Start:  Sat May 11 10:40:09 2013   End:  Sat May 11 10:40:10 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00141092 hypothetical protein (402 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	9e-28
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	3e-18
pfam03188	137	pfam03188, Cytochrom_B561, Eukaryotic cytochrome b	0.002

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  100 bits (252), Expect = 9e-28
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 1   SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYW 60
            A  L   GF +GI L     G +   H  LG     L  LQ L  L RP   +K R  W
Sbjct: 78  LAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIW 137

Query: 61  KSYHHFVGYACVVLGVVNVFQGFEVMGEG-RSYAKLAYCLCLSTLIGVCIALEV 113
              H ++G A ++L +VN+F G ++ G G     K+AY + ++ L  V + LE+
Sbjct: 138 NWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI 191

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score = 74.6 bits (184), Expect = 3e-18
 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 1   SAFFLGTVGFGIGIRLGDLSPGVV-YGLHRKLGFTAFCLGALQTLALLFR---PKTTNKF 56
            A  LG +G        + S     Y LH  LG  AF L  LQ L+   R   P   +K+
Sbjct: 43  LALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKY 102

Query: 57  RKYWKSYHHFVGYACVVLGVVNVFQGF 83
           R Y   YH FVG A  +L +V +F G 
Sbjct: 103 RSYLNPYHRFVGLAAFILAIVTIFLGL 129

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 2   AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL---ALLFRPKTTNKFR 57
           A  LG VG     +  +       Y LH  LG T   L  LQ L   AL   P  +   R
Sbjct: 45  ALILGVVGLLAVFKFHNELGIPHFYSLHSWLGLTTVILFLLQWLSGFALFLFPGLSRSIR 104

Query: 58  KYWKSYHHFVGYACVVLGVVNVFQGF 83
                +H F G    VL +V    G 
Sbjct: 105 SLLLPWHVFFGLVIFVLAIVTALLGL 130

Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a eukaryotic family. Members of the 'prokaryotic cytochrome b561' family can be found in Pfam: PF01292. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	99.82
KOG4293	403	consensus Predicted membrane protein, contains DoH	99.76
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.58
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.37
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.28
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.12
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	98.57
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	98.51
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	98.35
PLN02680	232	carbon-monoxide oxygenase	98.27
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	98.23
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	98.14
PLN02351	242	cytochromes b561 family protein	98.05
PLN02810	231	carbon-monoxide oxygenase	97.73
KOG1619	245	consensus Cytochrome b [Energy production and conv	97.7
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	97.07
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	94.15
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	93.63
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	92.42
PRK09546	324	zntB zinc transporter; Reviewed	91.65
PF10067	103	DUF2306: Predicted membrane protein (DUF2306); Int	90.96
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	90.23
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	89.81
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	88.31
COG0598	322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	88.2
PF10951	347	DUF2776: Protein of unknown function (DUF2776); In	87.49
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	87.15
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	86.48
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	85.32
PRK11085	316	magnesium/nickel/cobalt transporter CorA; Provisio	85.3
PF11044	49	TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 tran	85.01
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	84.37
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	83.62
COG5658	204	Predicted integral membrane protein [Function unkn	82.57
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	82.5
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	81.98
PLN02680	232	carbon-monoxide oxygenase	81.02

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=99.82  E-value=2.9e-20  Score=143.33  Aligned_cols=112  Identities=34%  Similarity=0.567  Sum_probs=97.5

Q ss_pred             eehhhHHHhhhHhhcccCCCCcccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQ   81 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~l   81 (140)
                      +++++++|+++++...++......+.|+++|+++++++++||+.+++||.+.++.|.+|++.|+++||++.++|++|+++
T Consensus        79 ~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~  158 (191)
T cd08760          79 AVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFL  158 (191)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999751212224689999999999999999999999999999899999999999999999999999999


Q ss_pred             hcccccccc-CCcchhHHHHHHHHHHHHHHHHH
Q 048625           82 GFEVMGEGR-SYAKLAYCLCLSTLIGVCIALEV  113 (140)
Q Consensus        82 Gl~l~~~~~-~~w~i~y~~~~~~~~~~~i~lEv  113 (140)
                      |+++..++. +.|.++|++++++++++++++|.
T Consensus       159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (191)
T cd08760         159 GLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI  191 (191)
T ss_pred             HHHHhcCCcccchhhHHHHHHHHHHHHHHHHcC
Confidence            999995541 46888999999999999998873

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=99.76  E-value=1.8e-20  Score=159.85  Aligned_cols=128  Identities=38%  Similarity=0.678  Sum_probs=114.6

Q ss_pred             CeehhhHHHhhhHhhcccCCCCcccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHH
Q 048625            1 SAFFLGTVGFGIGIRLGDLSPGVVYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVF   80 (140)
Q Consensus         1 ~g~~l~~~G~~lgi~l~~~s~~~~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~   80 (140)
                      ++++++++|+..|.++.+++.+.....|+.+|+..++++++|+++.++||.|++|.|++|||+||..||.+.++|++|++
T Consensus       257 ~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~  336 (403)
T KOG4293|consen  257 TGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIF  336 (403)
T ss_pred             eEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHh
Confidence            35788899999999998887777789999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHhh
Q 048625           81 QGFEVMGEGRSYAK-LAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKLR  129 (140)
Q Consensus        81 lGl~l~~~~~~~w~-i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~~  129 (140)
                      .|+++. .|+..|. ++|+.+.+....+.+++|+.+|....++.+.+++.
T Consensus       337 ~~~~l~-~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~  385 (403)
T KOG4293|consen  337 DGLELL-YPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPSPSSMS  385 (403)
T ss_pred             hhHhhh-cCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccCccccc
Confidence            999999 6666687 79999999999999999999987766666644443

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.58  E-value=1.3e-15  Score=110.86  Aligned_cols=82  Identities=38%  Similarity=0.648  Sum_probs=71.9

Q ss_pred             eehhhHHHhhhHhhcccCCC-CcccccchhHHHHHHHHHHHHHHHhhhccCCC---CCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALLFRPKTT---NKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~-~~~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~---~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+++++...+++. ....+.|+++|++++++..+|++.+++||.++   ++.|..|+++|+++||++.++|++
T Consensus        44 a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~  123 (129)
T smart00665       44 ALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIV  123 (129)
T ss_pred             HHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999998866532 22358999999999999999999888888876   778999999999999999999999


Q ss_pred             HHHHhc
Q 048625           78 NVFQGF   83 (140)
Q Consensus        78 ni~lGl   83 (140)
                      |+++|+
T Consensus       124 ~~~lG~  129 (129)
T smart00665      124 TIFLGL  129 (129)
T ss_pred             HHHccC
Confidence            999986

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.37  E-value=7.3e-13  Score=96.45  Aligned_cols=84  Identities=29%  Similarity=0.505  Sum_probs=69.0

Q ss_pred             eehhhHHHhhhHhhcccCCC-CcccccchhHHHHHHHHHHHHHHHhhhc---cCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALLFR---PKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~-~~~~~~H~~iGi~v~~l~~lQ~l~~~~r---p~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      |+++.++|+.+.+...++.+ ....+.|.++|++++++.++|++.++++   |+++.+.|+.|++.|+++|+++.++|++
T Consensus        45 ~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~  124 (137)
T PF03188_consen   45 ALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIA  124 (137)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999888665422 1225899999999999999999865543   5566778899999999999999999999


Q ss_pred             HHHHhccc
Q 048625           78 NVFQGFEV   85 (140)
Q Consensus        78 ni~lGl~l   85 (140)
                      |+++|++.
T Consensus       125 ~i~~G~~~  132 (137)
T PF03188_consen  125 TIFLGLTE  132 (137)
T ss_pred             HHHHHHHH
Confidence            99999953

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.28  E-value=4.3e-12  Score=92.30  Aligned_cols=82  Identities=29%  Similarity=0.417  Sum_probs=66.6

Q ss_pred             eehhhHHHhhhHhhcccCCCC-cccccchhHHHHHHHHHHHHHHHhhh---ccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPG-VVYGLHRKLGFTAFCLGALQTLALLF---RPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~-~~~~~H~~iGi~v~~l~~lQ~l~~~~---rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+++++...++.+. -..+.|.++|++++++.++|++.++.   .|++..++|..++++|++.|+++.+++++
T Consensus        46 ~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~  125 (131)
T cd08554          46 AFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIA  125 (131)
T ss_pred             HHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999987643221 12589999999999999999976553   45555556999999999999999999999


Q ss_pred             HHHHhc
Q 048625           78 NVFQGF   83 (140)
Q Consensus        78 ni~lGl   83 (140)
                      |+++|.
T Consensus       126 t~~~G~  131 (131)
T cd08554         126 TILLGI  131 (131)
T ss_pred             HHHhcC
Confidence            999984

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.12  E-value=6.8e-11  Score=90.81  Aligned_cols=84  Identities=25%  Similarity=0.316  Sum_probs=65.6

Q ss_pred             eehhhHHHhhhHhhcccCCC-CcccccchhHHHHHHHHHHHHHHHhh---hccCCC--CCcceeeeehhhhHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSP-GVVYGLHRKLGFTAFCLGALQTLALL---FRPKTT--NKFRKYWKSYHHFVGYACVVLG   75 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~-~~~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~--~~~R~~w~~~H~~~Gr~~iiLg   75 (140)
                      +.+++++|+...+...++.+ ....+.|.++|++++++.++|++.++   ++|.+.  .++|+.++++|++.|+++.++|
T Consensus        68 a~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~  147 (183)
T cd08761          68 ALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLG  147 (183)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            45677888877776544321 11258999999999999999997544   344333  2578889999999999999999


Q ss_pred             HHHHHHhccc
Q 048625           76 VVNVFQGFEV   85 (140)
Q Consensus        76 ivni~lGl~l   85 (140)
                      ++|+.+|++.
T Consensus       148 ~~t~~lGl~~  157 (183)
T cd08761         148 LATLVLGLET  157 (183)
T ss_pred             HHHHHHhcCc
Confidence            9999999987

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=98.57  E-value=7.8e-08  Score=72.12  Aligned_cols=84  Identities=26%  Similarity=0.338  Sum_probs=62.9

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHh---hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLAL---LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~---~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+..-+...++.+.. ..+.|.++|++++++..+|.+.+   ++.|....+.|.---.+|++.|+++.+++++
T Consensus        51 a~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~  130 (144)
T cd08766          51 ALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIA  130 (144)
T ss_pred             HHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788887777665443211 24889999999999999998643   3578754334544455899999999999999


Q ss_pred             HHHHhccc
Q 048625           78 NVFQGFEV   85 (140)
Q Consensus        78 ni~lGl~l   85 (140)
                      ++.+|+.-
T Consensus       131 t~~lGl~e  138 (144)
T cd08766         131 TAETGLLE  138 (144)
T ss_pred             HHHHHHHH
Confidence            99999853

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=98.51  E-value=3.4e-07  Score=72.76  Aligned_cols=84  Identities=30%  Similarity=0.456  Sum_probs=60.8

Q ss_pred             eehhhHHHhhhHhhcccCC-CCc--ccccchhHHHHHHHHHHHHHHHhh---hccCCCCCcceeeeehhhhHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLS-PGV--VYGLHRKLGFTAFCLGALQTLALL---FRPKTTNKFRKYWKSYHHFVGYACVVLG   75 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s-~~~--~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~~~~R~~w~~~H~~~Gr~~iiLg   75 (140)
                      |++++++|+...+...++. ++.  .++.|.++|++++++..+|.+.++   +.|.-....|...-.+|+..|+.+.+++
T Consensus        68 Al~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLa  147 (214)
T cd08764          68 AFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLA  147 (214)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHH
Confidence            5677788877766654443 112  248899999999999999986433   5675433334333447999999999999


Q ss_pred             HHHHHHhccc
Q 048625           76 VVNVFQGFEV   85 (140)
Q Consensus        76 ivni~lGl~l   85 (140)
                      ++++.+|+.-
T Consensus       148 iaT~~lGl~e  157 (214)
T cd08764         148 VATALLGITE  157 (214)
T ss_pred             HHHHHHHHHH
Confidence            9999999954

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=98.35  E-value=6.6e-07  Score=67.04  Aligned_cols=83  Identities=25%  Similarity=0.318  Sum_probs=63.2

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHh---hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLAL---LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~---~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+..-+.--++.+.. .++.|.++|++++++..+|-+.+   ++-|....+.|..+-.+|++.|+++.+++++
T Consensus        51 a~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~  130 (143)
T cd08763          51 ALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVG  130 (143)
T ss_pred             HHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4566777776666544432211 25899999999999999997533   2567655566888888899999999999999


Q ss_pred             HHHHhcc
Q 048625           78 NVFQGFE   84 (140)
Q Consensus        78 ni~lGl~   84 (140)
                      +..+|+.
T Consensus       131 t~~lG~~  137 (143)
T cd08763         131 TSLLGLT  137 (143)
T ss_pred             HHHHHHH
Confidence            9999984

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=98.27  E-value=1.3e-06  Score=70.17  Aligned_cols=84  Identities=25%  Similarity=0.312  Sum_probs=62.7

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHh---hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLAL---LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~---~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+..-++..++++.. .++.|.++|++++++..+|.+.+   ++-|......|...--+|.+.|+.+.+++++
T Consensus        90 A~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~Laia  169 (232)
T PLN02680         90 AFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVA  169 (232)
T ss_pred             HHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888877766653322 24899999999999999997533   2567543334443346899999999999999


Q ss_pred             HHHHhccc
Q 048625           78 NVFQGFEV   85 (140)
Q Consensus        78 ni~lGl~l   85 (140)
                      +..+|+.-
T Consensus       170 T~~lG~~E  177 (232)
T PLN02680        170 TATTGILE  177 (232)
T ss_pred             HHHHHHHH
Confidence            99999853

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=98.23  E-value=1.7e-06  Score=65.58  Aligned_cols=83  Identities=19%  Similarity=0.252  Sum_probs=61.5

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHhh---hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLALL---FRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+..-+..-++.+.. .++.|.++|++++++..+|-+.++   +-|......|.-.-.+|.+.|+...+++++
T Consensus        58 a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~  137 (153)
T cd08765          58 AFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIA  137 (153)
T ss_pred             HHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777776666654443221 258999999999999999975332   456544445666667899999999999999


Q ss_pred             HHHHhcc
Q 048625           78 NVFQGFE   84 (140)
Q Consensus        78 ni~lGl~   84 (140)
                      +..+|+.
T Consensus       138 t~~lG~~  144 (153)
T cd08765         138 TALMGIT  144 (153)
T ss_pred             HHHHHHH
Confidence            9999985

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=98.14  E-value=3.8e-06  Score=65.14  Aligned_cols=84  Identities=23%  Similarity=0.340  Sum_probs=64.1

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHhh---hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLALL---FRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~~---~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+...+...++++-- .++.|..+|++++++..+|-+.++   +-|......|.-.-.+|...|+...+++++
T Consensus        81 Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laia  160 (179)
T cd08762          81 AFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIA  160 (179)
T ss_pred             HHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence            5678888888888876664321 137899999999999999975332   445433345666688999999999999999


Q ss_pred             HHHHhccc
Q 048625           78 NVFQGFEV   85 (140)
Q Consensus        78 ni~lGl~l   85 (140)
                      +..+|+.-
T Consensus       161 t~~lGl~e  168 (179)
T cd08762         161 SCISGINE  168 (179)
T ss_pred             HHHHHHHH
Confidence            99999853

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02351 cytochromes b561 family protein

Probab=98.05  E-value=2.2e-05  Score=63.49  Aligned_cols=83  Identities=22%  Similarity=0.246  Sum_probs=59.3

Q ss_pred             eehhhHHHhhhHhhcccC-CCCcccccchhHHHHHHHHHHHHHH-Hhh--hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDL-SPGVVYGLHRKLGFTAFCLGALQTL-ALL--FRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~-s~~~~~~~H~~iGi~v~~l~~lQ~l-~~~--~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+..-+...++ .+. .++.|.++|++++++..+|-+ ++.  +-|......|.-.-.+|..+|+...+++++
T Consensus        94 Ali~~vvGl~a~fh~~~~~i~n-lySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~Laia  172 (242)
T PLN02351         94 ALASGVFGIWTKFHGQDGIVAN-FYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVA  172 (242)
T ss_pred             HHHHHHHHHHHHHhcccCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHH
Confidence            566777777774332221 121 258999999999999999965 332  445544445555556899999999999999


Q ss_pred             HHHHhccc
Q 048625           78 NVFQGFEV   85 (140)
Q Consensus        78 ni~lGl~l   85 (140)
                      +..+|+.-
T Consensus       173 Ta~lGl~E  180 (242)
T PLN02351        173 TAETGLLE  180 (242)
T ss_pred             HHHHHHHH
Confidence            99999854

>PLN02810 carbon-monoxide oxygenase

Probab=97.73  E-value=5.3e-05  Score=60.88  Aligned_cols=84  Identities=26%  Similarity=0.368  Sum_probs=65.1

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHH-Hh--hhccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL-AL--LFRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l-~~--~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      +++++++|+..-+.-.++++-- .++.|..+|++++++..+|-+ ++  ++-|......|...-.+|..+|....+++++
T Consensus        90 Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAia  169 (231)
T PLN02810         90 ALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVG  169 (231)
T ss_pred             HHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence            5677888888877766654321 259999999999999999975 43  2567655555665568899999999999999


Q ss_pred             HHHHhccc
Q 048625           78 NVFQGFEV   85 (140)
Q Consensus        78 ni~lGl~l   85 (140)
                      +..+|+.-
T Consensus       170 ta~lGi~E  177 (231)
T PLN02810        170 NAALGFLE  177 (231)
T ss_pred             HHHHHHHH
Confidence            99999854

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=97.70  E-value=0.00012  Score=59.01  Aligned_cols=85  Identities=25%  Similarity=0.414  Sum_probs=64.2

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHH-Hhh--hccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTL-ALL--FRPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l-~~~--~rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      ++++++.|+..-|...+...-- .++.|.++|+.++.+-.+|-+ +++  +-|--..+.|.-.=..|..+|....+++++
T Consensus        99 Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~  178 (245)
T KOG1619|consen   99 ALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIV  178 (245)
T ss_pred             HHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHH
Confidence            4566777777777766553311 248999999999999999964 433  455554566766677899999999999999


Q ss_pred             HHHHhcccc
Q 048625           78 NVFQGFEVM   86 (140)
Q Consensus        78 ni~lGl~l~   86 (140)
                      +.-+|+...
T Consensus       179 ta~~Gl~ek  187 (245)
T KOG1619|consen  179 TALTGLLEK  187 (245)
T ss_pred             HHHHHHHHH
Confidence            999999544

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=97.07  E-value=0.00061  Score=48.49  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=38.5

Q ss_pred             eehhhHHHhhhHhhcccCCCCc-ccccchhHHHHHHHHHHHHHHHhhh
Q 048625            2 AFFLGTVGFGIGIRLGDLSPGV-VYGLHRKLGFTAFCLGALQTLALLF   48 (140)
Q Consensus         2 g~~l~~~G~~lgi~l~~~s~~~-~~~~H~~iGi~v~~l~~lQ~l~~~~   48 (140)
                      ++++.++|+.+|....++.+++ ..++|.++|.+++++++.|++.+++
T Consensus        54 ~~~l~~~g~~~g~~~~~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~  101 (105)
T PF10348_consen   54 FLVLMILGLFLGSVYNGSTPDLYPNNAHGKMGWILFVLMIVQVILGVI  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999887776544 5799999999999999999875543

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=94.15  E-value=0.47  Score=34.06  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=14.8

Q ss_pred             eeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625           58 KYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (140)
Q Consensus        58 ~~w~~~H~~~Gr~~iiLgivni~lGl~l~   86 (140)
                      +.|...|+...-++.+++++.+..++...
T Consensus        31 ~~~~~~H~~lq~~a~~~~~~g~~~~~~~~   59 (129)
T smart00665       31 PTWFLLHVVLQILALVLGVIGLLAIFISH   59 (129)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44455555555555555555555544443

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=93.63  E-value=0.75  Score=32.97  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=17.3

Q ss_pred             ceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625           57 RKYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (140)
Q Consensus        57 R~~w~~~H~~~Gr~~iiLgivni~lGl~l~   86 (140)
                      |+.|.+.|+.+.-.+.+++++-...++...
T Consensus        32 ~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~   61 (131)
T cd08554          32 KRALKLLHAILHLLAFVLGLVGLLAVFLFH   61 (131)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445555666666666666665555555444

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=92.42  E-value=0.35  Score=39.51  Aligned_cols=51  Identities=16%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625           69 YACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS  123 (140)
Q Consensus        69 r~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~  123 (140)
                      -+.+.+.+++++.||+..+-|...|..+|..++++++++.++    .++.++||+
T Consensus       266 ~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~----~~~~fkrk~  316 (318)
T TIGR00383       266 TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG----PLIYFRRKG  316 (318)
T ss_pred             HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH----HHHHHHHcC
Confidence            345567788889999987667667888888877777776655    333455554

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PRK09546 zntB zinc transporter; Reviewed

Probab=91.65  E-value=0.56  Score=38.75  Aligned_cols=43  Identities=7%  Similarity=0.006  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHH
Q 048625           68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA  110 (140)
Q Consensus        68 Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~  110 (140)
                      .-+.+.+.+++++.||+..+-|...|..+|.+++++++++.++
T Consensus       271 t~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~  313 (324)
T PRK09546        271 AMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG  313 (324)
T ss_pred             HHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHH
Confidence            3455667889999999987667667888887777776666554

>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function

Probab=90.96  E-value=1.3  Score=31.01  Aligned_cols=27  Identities=11%  Similarity=0.228  Sum_probs=22.5

Q ss_pred             eehhhhHHHHHHHHHHHHHHHhccccc
Q 048625           61 KSYHHFVGYACVVLGVVNVFQGFEVMG   87 (140)
Q Consensus        61 ~~~H~~~Gr~~iiLgivni~lGl~l~~   87 (140)
                      ...|++.||+-+....+....|+-+..
T Consensus         6 ~~~HR~lGrvyv~~~~~~a~sa~~i~~   32 (103)
T PF10067_consen    6 PRLHRWLGRVYVAAMLISALSALFIAF   32 (103)
T ss_pred             ccHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            456999999999998888888888774

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=90.23  E-value=1.1  Score=33.16  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=43.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhc--------------------cCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625           25 YGLHRKLGFTAFCLGALQTLALLFR--------------------PKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE   84 (140)
Q Consensus        25 ~~~H~~iGi~v~~l~~lQ~l~~~~r--------------------p~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~   84 (140)
                      ...|..+|++.+++..+..+..+.+                    +.++.+.+.-+|...++.-.+...+.++-+.+|+-
T Consensus        47 ~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~  126 (188)
T PF00033_consen   47 RWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLI  126 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999998876666                    22222334455777788888888888888888888


Q ss_pred             c
Q 048625           85 V   85 (140)
Q Consensus        85 l   85 (140)
                      +
T Consensus       127 ~  127 (188)
T PF00033_consen  127 M  127 (188)
T ss_dssp             C
T ss_pred             H
Confidence            8

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=89.81  E-value=1  Score=34.83  Aligned_cols=63  Identities=22%  Similarity=0.241  Sum_probs=44.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHhh----hccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccccccCCcc
Q 048625           26 GLHRKLGFTAFCLGALQTLALL----FRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMGEGRSYAK   94 (140)
Q Consensus        26 ~~H~~iGi~v~~l~~lQ~l~~~----~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~~~~~~w~   94 (140)
                      ..|..+|.++++++.+-.++..    .+.++      +|.-.|.|.|-.+..|-.++..+.-++..++++.|+
T Consensus        81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~------lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R  147 (175)
T PF13301_consen   81 DRHYRLGFALLAFMGLGALGGQLGTYRQNGK------LFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWAR  147 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHcCCC------CccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHH
Confidence            5788888888888777766443    22222      556668888888888888888888888754433454

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=88.31  E-value=4.8  Score=28.66  Aligned_cols=59  Identities=22%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625           26 GLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (140)
Q Consensus        26 ~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~   86 (140)
                      ..|..+-.+.+++.++=....+..  ++.+..+-++-.|.++|-+++++.+.+...|+-..
T Consensus        36 ~~H~~lq~l~~~~~~~G~~~~~~~--~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~   94 (137)
T PF03188_consen   36 RIHWILQVLALVFAIIGFVAIFIN--KNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRF   94 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--ccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence            566666655555544443322211  11112234455677777777777777766666554

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

Probab=88.20  E-value=1.2  Score=36.96  Aligned_cols=45  Identities=13%  Similarity=0.164  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHH
Q 048625           66 FVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA  110 (140)
Q Consensus        66 ~~Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~  110 (140)
                      .+.-+.+..-+++++.||+..+-|...|..+|-+++++++++.++
T Consensus       267 i~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~  311 (322)
T COG0598         267 IVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALL  311 (322)
T ss_pred             HHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHH
Confidence            345666777888999999999767667888888877777777655

>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function

Probab=87.49  E-value=1.6  Score=36.76  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=48.6

Q ss_pred             hhhHHHhhhHhhcccCCC---CcccccchhHHHHHHHHHHHHHHHhhh---ccCCCCCcceeeeehhhhHHHHHHHHHHH
Q 048625            4 FLGTVGFGIGIRLGDLSP---GVVYGLHRKLGFTAFCLGALQTLALLF---RPKTTNKFRKYWKSYHHFVGYACVVLGVV   77 (140)
Q Consensus         4 ~l~~~G~~lgi~l~~~s~---~~~~~~H~~iGi~v~~l~~lQ~l~~~~---rp~k~~~~R~~w~~~H~~~Gr~~iiLgiv   77 (140)
                      ++.++|++-++.+-.++.   .+.---|.-.|+.+.|-..+-.++-..   |..-+.|.|+.|.++-...|.+.+++|+.
T Consensus       163 ~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~lVl~mGsi~~l~Gl~  242 (347)
T PF10951_consen  163 LCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPKLVLVMGSISILWGLY  242 (347)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHHHHHHHhhHHHHhhhh
Confidence            467888888888754322   111245888888888876666555444   44445677888887666666666666544


Q ss_pred             HH
Q 048625           78 NV   79 (140)
Q Consensus        78 ni   79 (140)
                      -+
T Consensus       243 vl  244 (347)
T PF10951_consen  243 VL  244 (347)
T ss_pred             eE
Confidence            33

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=87.15  E-value=10  Score=29.52  Aligned_cols=64  Identities=17%  Similarity=0.128  Sum_probs=40.6

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccc
Q 048625           24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMG   87 (140)
Q Consensus        24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~   87 (140)
                      .++.||.+=.+-+++..-|.+..+-.|...+..|..+..+|..+--.+++++++.+..=++--+
T Consensus        34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn   97 (179)
T cd08762          34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHN   97 (179)
T ss_pred             ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4689998755555544444444332243322234456689999999999998888877666553

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=86.48  E-value=0.78  Score=31.93  Aligned_cols=27  Identities=26%  Similarity=0.485  Sum_probs=15.9

Q ss_pred             HHHHHhhhhhchhH-----------Hhhhhc--cccCCCC
Q 048625          113 VNSWVIFCRKSKEE-----------KLRREG--LIGGLNH  139 (140)
Q Consensus       113 v~~~~~~~~k~~~~-----------~~~~~~--~~~~~~~  139 (140)
                      +..|...|+|||++           +++-|+  .-+|++|
T Consensus        48 VilwfvCC~kRkrsRrPIYrPvI~~~P~~~~~~~~~GL~~   87 (94)
T PF05393_consen   48 VILWFVCCKKRKRSRRPIYRPVIGLEPQNLQIHRDDGLRN   87 (94)
T ss_pred             HHHHHHHHHHhhhccCCccccccccCCCcccccccCCcce
Confidence            45566666665533           456666  6667665

; GO: 0016021 integral to membrane

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=85.32  E-value=6.8  Score=31.23  Aligned_cols=59  Identities=17%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625           24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE   84 (140)
Q Consensus        24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~   84 (140)
                      .++.||.+=.+-+++..-|.+ ...|+.+..+ +..+...|..+.-.+++++++-+..-++
T Consensus        23 ~Fn~HP~lM~~Gfi~l~geAi-Lvyr~~~~~~-k~~~k~~H~~L~~lAl~~~ivGl~avf~   81 (214)
T cd08764          23 QFNWHPLLMVLGLIFLYGNSI-LVYRVFRNTR-KKRLKLLHAVLHLLAFILAVIGLKAVFD   81 (214)
T ss_pred             eEeecHHHHHHHHHHHHHHHH-HHhccCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888765444433333322 2245544332 2335778888888888887776554443

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional

Probab=85.30  E-value=2.3  Score=35.67  Aligned_cols=43  Identities=12%  Similarity=-0.041  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHH
Q 048625           68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIA  110 (140)
Q Consensus        68 Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~  110 (140)
                      --+.+...+++++.||+..+-|...|..+|...+++++++.++
T Consensus       263 s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~  305 (316)
T PRK11085        263 SVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLA  305 (316)
T ss_pred             HHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            3445667778889999987666666877777766666665543

>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses

Probab=85.01  E-value=2.9  Score=25.61  Aligned_cols=27  Identities=11%  Similarity=-0.015  Sum_probs=17.2

Q ss_pred             Ccc-hhHHHHHHHHHHHHHHHHHHHHHh
Q 048625           92 YAK-LAYCLCLSTLIGVCIALEVNSWVI  118 (140)
Q Consensus        92 ~w~-i~y~~~~~~~~~~~i~lEv~~~~~  118 (140)
                      .|. +.+++++..-..+++.+-++...+
T Consensus         3 ~wlt~iFsvvIil~If~~iGl~IyQkik   30 (49)
T PF11044_consen    3 TWLTTIFSVVIILGIFAWIGLSIYQKIK   30 (49)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            354 467777766677777777766443

The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=84.37  E-value=15  Score=27.81  Aligned_cols=58  Identities=19%  Similarity=0.159  Sum_probs=34.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhh-hccCCCC--CcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625           25 YGLHRKLGFTAFCLGALQTLALL-FRPKTTN--KFRKYWKSYHHFVGYACVVLGVVNVFQGFE   84 (140)
Q Consensus        25 ~~~H~~iGi~v~~l~~lQ~l~~~-~rp~k~~--~~R~~w~~~H~~~Gr~~iiLgivni~lGl~   84 (140)
                      .+.|+.+=.+.  ..+++|.+.+ +||....  +.|+.|.+.|+++.-.+.+++++.....+.
T Consensus        21 f~~Hp~~m~i~--~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~   81 (183)
T cd08761          21 FSWHPLLMSLG--FLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYY   81 (183)
T ss_pred             eehhHHHHHHH--HHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888765433  3444554433 5653211  346667788888887777777666555543

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=83.62  E-value=5.7  Score=30.66  Aligned_cols=60  Identities=13%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             cccccchhHHHHHHHHHHHHH-HHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625           23 VVYGLHRKLGFTAFCLGALQT-LALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (140)
Q Consensus        23 ~~~~~H~~iGi~v~~l~~lQ~-l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~   86 (140)
                      ...++|-.-|+++..|+.++. +.-...++++.    -|...|...+-+++++=.....+|.+..
T Consensus       112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~----~~R~lHi~lN~~~l~Lf~~q~itG~~il  172 (175)
T PF13301_consen  112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRP----WARRLHIYLNSLALLLFAWQAITGWRIL  172 (175)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHHHHccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345889999999999998886 44444443332    3444799999999999999999998764

>COG5658 Predicted integral membrane protein [Function unknown]

Probab=82.57  E-value=5.7  Score=31.58  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=27.6

Q ss_pred             CcceeeeehhhhHHHHHHHHHHHHHHHhcccc
Q 048625           55 KFRKYWKSYHHFVGYACVVLGVVNVFQGFEVM   86 (140)
Q Consensus        55 ~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~   86 (140)
                      +.+..|+..|...|-.+++.+.+..+.++..-
T Consensus        40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~   71 (204)
T COG5658          40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAG   71 (204)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55678999999999999999999888887665

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=82.50  E-value=17  Score=27.60  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccccc
Q 048625           25 YGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEVMG   87 (140)
Q Consensus        25 ~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l~~   87 (140)
                      ...|..+=++.+++++.=....+..-   .+.+..++-.|.++|-+++++.+++...|+-...
T Consensus        69 ~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~  128 (191)
T cd08760          69 FYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPH  128 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCC
Confidence            46888887766666665543333221   2234556778999999999999999999997764

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=81.98  E-value=18  Score=26.97  Aligned_cols=58  Identities=21%  Similarity=0.416  Sum_probs=35.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhcc
Q 048625           24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFE   84 (140)
Q Consensus        24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~   84 (140)
                      .++.||.+=.+-+++...|.+. .+|+.|.+  |+.+..+|+.+--.+++++++-+..=++
T Consensus         7 ~Fn~HP~lM~~gfi~l~~eAiL-~~r~~~~~--k~~~k~iH~~l~~la~~~~vvGl~avf~   64 (144)
T cd08766           7 IFNVHPVLMVIGFIFLAGEAIL-AYKTVPGS--REVQKAVHLTLHLVALVLGIVGIYAAFK   64 (144)
T ss_pred             eeeccHHHHHHHHHHHHHHHHH-Hhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588998766555544455432 24555533  3445668988877777777766654443

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=81.02  E-value=14  Score=29.87  Aligned_cols=59  Identities=12%  Similarity=0.268  Sum_probs=35.0

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhccCCCCCcceeeeehhhhHHHHHHHHHHHHHHHhccc
Q 048625           24 VYGLHRKLGFTAFCLGALQTLALLFRPKTTNKFRKYWKSYHHFVGYACVVLGVVNVFQGFEV   85 (140)
Q Consensus        24 ~~~~H~~iGi~v~~l~~lQ~l~~~~rp~k~~~~R~~w~~~H~~~Gr~~iiLgivni~lGl~l   85 (140)
                      .++.||.+=.+-+++..-|.+.. .|+.+.+  |+.....|+.+--++++++++-+..=++.
T Consensus        46 ~Fn~HPlLM~~Gfi~l~geAIL~-yr~~~~~--k~~~K~iH~~L~~lA~~l~vvGl~avfk~  104 (232)
T PLN02680         46 IFNVHPVLMVIGLVLLNGEAMLA-YKTVPGT--KNLKKLVHLTLQFLAFCLSLIGVWAALKF  104 (232)
T ss_pred             eEechHHHHHHHHHHHHHHHHhc-ccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45899987665555533343322 4555533  33446678777777777776666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	91.32
4ev6_A	339	Magnesium transport protein CORA; membrane protein	91.22
2iub_A	363	CORA, divalent cation transport-related protein; m	89.01
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	85.54

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=91.32  E-value=0.14  Score=31.61  Aligned_cols=38  Identities=13%  Similarity=0.029  Sum_probs=27.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHh
Q 048625           91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSKEEKL  128 (140)
Q Consensus        91 ~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~~~~~  128 (140)
                      +.|.+..+++.+.+.++-+++-..++..|+|+++++..
T Consensus         8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~   45 (54)
T 2l8s_A            8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKME   45 (54)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhh
Confidence            45777777777777777666666777888888875443

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=91.22  E-value=0.29  Score=39.43  Aligned_cols=49  Identities=12%  Similarity=0.093  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625           71 CVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS  123 (140)
Q Consensus        71 ~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~  123 (140)
                      .+.+.+++++.||+..+-|...|.++|-+++++++++.++    .++.++||+
T Consensus       289 flP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~----~~~~fkrk~  337 (339)
T 4ev6_A          289 FAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMI----FVYIFRRSG  337 (339)
T ss_dssp             SSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHH----HHHHHHTTT
T ss_pred             HHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHH----HHHHHHHcC
Confidence            3456778899999988667667888887777777666544    333455554

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=89.01  E-value=0.24  Score=40.41  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048625           68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKS  123 (140)
Q Consensus        68 Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~  123 (140)
                      .-+.+.+.+++++.||+..+-|...|.++|.+++++++++.++    .++.++||+
T Consensus       310 t~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~----~~~~Fkrk~  361 (363)
T 2iub_A          310 ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI----MVVYFKKKK  361 (363)
T ss_dssp             HHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHH----HHTTTTSCC
T ss_pred             HHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHH----HHHHHHHcc
Confidence            3445566778888899887656556888887777777666544    344555554

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=85.54  E-value=0.49  Score=29.05  Aligned_cols=34  Identities=12%  Similarity=-0.042  Sum_probs=23.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 048625           91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK  124 (140)
Q Consensus        91 ~~w~i~y~~~~~~~~~~~i~lEv~~~~~~~~k~~  124 (140)
                      +.|.+..+++.+.+.++-+++-..++..|+|+++
T Consensus        11 p~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~   44 (54)
T 2knc_A           11 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP   44 (54)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence            3466666677777776666665677777888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d2iuba2	64	Magnesium transport protein CorA {Thermotoga marit	88.26

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=88.26  E-value=0.18  Score=29.90  Aligned_cols=43  Identities=12%  Similarity=0.084  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHhccccccccCCcchhHHHHHHHHHHHHH
Q 048625           67 VGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCI  109 (140)
Q Consensus        67 ~Gr~~iiLgivni~lGl~l~~~~~~~w~i~y~~~~~~~~~~~i  109 (140)
                      +.-+.+.+..++.+.|++..+-|...|..+|-.++++.++..+
T Consensus        12 it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~   54 (64)
T d2iuba2          12 IATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAV   54 (64)
T ss_dssp             HHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            3445666778888899988755655566665555555444433