Citrus Sinensis ID: 048699
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 312 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ECP7 | 470 | Sugar transporter ERD6-li | yes | no | 0.871 | 0.578 | 0.412 | 6e-57 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.817 | 0.533 | 0.417 | 2e-56 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.878 | 0.578 | 0.387 | 9e-56 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.788 | 0.531 | 0.409 | 7e-52 | |
| Q94AF9 | 467 | Sugar transporter ERD6-li | no | no | 0.868 | 0.580 | 0.357 | 5e-51 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.875 | 0.580 | 0.370 | 4e-50 | |
| Q93Z80 | 458 | Sugar transporter ERD6-li | no | no | 0.820 | 0.558 | 0.378 | 8e-50 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.878 | 0.552 | 0.363 | 8e-50 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.916 | 0.593 | 0.362 | 1e-46 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.852 | 0.575 | 0.350 | 2e-46 |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 185/315 (58%), Gaps = 43/315 (13%)
Query: 14 DPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQ 73
D L P + N E Q+S + T ++ ++ VA+ GSF+ +
Sbjct: 6 DEANLAPETSLINKEN------QDSSATITTTLLLTTFVAVSGSFVFGSA---------- 49
Query: 74 IGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSD 133
IGYSSP +S +T +L LSV E L + ++TIGA+ G+ ++G+IAD+ G+R M S+
Sbjct: 50 IGYSSPVQSDLTKELNLSVAEYSLFGS---ILTIGAMIGAAMSGRIADMIGRRATMGFSE 106
Query: 134 LFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLL 172
+FCILGWLAI SK +P+YI EI PK +RG +T +QLL
Sbjct: 107 MFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTTVHQLL 166
Query: 173 VASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTT 232
+ G+SVTYL+G+ + +LALI +PC++Q++GLF IPE + + A +GK +E +
Sbjct: 167 ICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWL---AKVGKWEEFEIA 223
Query: 233 LQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGS 292
LQRL G++ADIS ES +I+DYT+ + S I LFQ YA SL VGVGLMV+Q G
Sbjct: 224 LQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFGGV 283
Query: 293 AAIAYYASYIFAAAG 307
IA+YAS IF +AG
Sbjct: 284 NGIAFYASSIFESAG 298
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 174/292 (59%), Gaps = 37/292 (12%)
Query: 37 ESDSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDL 96
+S+ T V+ S+ +A+CGSF + +GY+S AE GI DL LS+ +
Sbjct: 26 DSECRITACVILSTFIAVCGSF----------SFGVSLGYTSGAEIGIMKDLDLSIAQ-- 73
Query: 97 LIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQI------- 149
A L T+GA G+L +GK+A + G+R M +SDL CI+GW +IAF+K +
Sbjct: 74 -FSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGR 132
Query: 150 --------------PIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALI 195
P+YI EI+PK+VRG +T TNQLL SGL++ Y G ++ +LAL+
Sbjct: 133 ISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALL 192
Query: 196 AAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTK 255
A+PC +QV+GLFF+PE + + A +G +KEL+ +L RL G ADIS E+ DI TK
Sbjct: 193 GALPCFIQVIGLFFVPESPRWL---AKVGSDKELENSLLRLRGGNADISREASDIEVMTK 249
Query: 256 TFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAG 307
+NDS++ LFQR Y Y+L VG+GLM++Q GS+A+ YAS I AG
Sbjct: 250 MVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAG 301
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 184/328 (56%), Gaps = 54/328 (16%)
Query: 1 METSESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLM 60
ME S+EEGL+ ++ N + +S+ T V+ S+ VA+CGSF
Sbjct: 3 MEEGRSIEEGLL---------------QLKNKN--DDSECRITACVILSTFVAVCGSFSF 45
Query: 61 ATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIA 120
G Y+S AE+G+ DL LS+ + A T+GA G+L G +A
Sbjct: 46 GVATG----------YTSGAETGVMKDLDLSIAQ---FSAFGSFATLGAAIGALFCGNLA 92
Query: 121 DLTGQRCAMRLSDLFCILGWLAIAFSKQI---------------------PIYITEIAPK 159
+ G+R M +SD CI GWL+IAF+K++ P+YI EI PK
Sbjct: 93 MVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPK 152
Query: 160 NVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIR 219
+VRG +T +NQLL +GL++ Y G ++ LAL+ A+PC +QV+GLFF+PE + +
Sbjct: 153 HVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWL-- 210
Query: 220 RATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSV 279
A +G +KEL+ +L RL G+ ADIS E+ +I+ TK +NDS++ LFQR Y Y+L V
Sbjct: 211 -AKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVV 269
Query: 280 GVGLMVMQPLVGSAAIAYYASYIFAAAG 307
G+GLM++Q GSAA+ YAS IF AG
Sbjct: 270 GIGLMLIQQFSGSAAVISYASTIFRKAG 297
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 166/283 (58%), Gaps = 37/283 (13%)
Query: 46 VVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLM 105
V S+ VA+CGSF + G YSSPA++ I DL L++ E L + L+
Sbjct: 28 VYLSTFVAVCGSFAFGSCAG----------YSSPAQAAIRNDLSLTIAEFSLFGS---LL 74
Query: 106 TIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAI---------------------A 144
T GA+ G++ +G IADL G++ AMR+S FC++GWLAI A
Sbjct: 75 TFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGA 134
Query: 145 FSKQIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQV 204
FS +PI+I EIAPK RGA T NQ+L+ +G+SV++++GT+V+ VLALI +PC
Sbjct: 135 FSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASF 194
Query: 205 VGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAG 264
+GLFFIPE + + A +G++ E + L++L GK ADIS E+ +I+DY +T + +A
Sbjct: 195 LGLFFIPESPRWL---AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAK 251
Query: 265 IFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAG 307
+ LFQR Y S+ + GLMV Q G I +Y S IF AG
Sbjct: 252 MLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAG 294
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 180/327 (55%), Gaps = 56/327 (17%)
Query: 2 ETSESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMA 61
E + S+EEGL+ N+ D T V+ S+ VA+C +F
Sbjct: 5 EENRSMEEGLLQH-----------QND--------RDDRRITACVILSTFVAVCSAF--- 42
Query: 62 THNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD 121
Y GY+S AE+ I +L LS+ + A + +G G+L +G++A
Sbjct: 43 -------SYGCAAGYTSGAETAIMKELDLSMAQ---FSAFGSFLNVGGAVGALFSGQLAV 92
Query: 122 LTGQRCAMRLSDLFCILGWLAIAFSKQI---------------------PIYITEIAPKN 160
+ G+R + D FC+ GWL+IAF+K + P+YI EI PK+
Sbjct: 93 ILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEITPKH 152
Query: 161 VRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRR 220
VRGA+TA+NQLL SG+S+ Y GTV++ V+A+I A+PC+LQ +G+FFIPE + +
Sbjct: 153 VRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWL--- 209
Query: 221 ATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVG 280
A I KE++++L RL GK D+S E+ +I+ TK + DS++ +FQ+ Y +L VG
Sbjct: 210 AKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVG 269
Query: 281 VGLMVMQPLVGSAAIAYYASYIFAAAG 307
+GLM++Q L G++ I YY++ IF AG
Sbjct: 270 IGLMLIQQLSGASGITYYSNAIFRKAG 296
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 173/327 (52%), Gaps = 54/327 (16%)
Query: 2 ETSESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMA 61
E S +LE GL+ N+I+ + T V+FS+ V++CGSF
Sbjct: 5 ENSRNLEAGLLLRK---------NQNDIN--------ECRITAVVLFSTFVSVCGSFCFG 47
Query: 62 THNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD 121
G YSS A++GI DLGLSV + + + +MT G + G++ +GK+AD
Sbjct: 48 CAAG----------YSSVAQTGIINDLGLSVAQYSMFGS---IMTFGGMIGAIFSGKVAD 94
Query: 122 LTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKN 160
L G++ M + +FCI GW+A+A +K IP+YI EI PK+
Sbjct: 95 LMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEITPKH 154
Query: 161 VRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRR 220
VRGA+ NQL+ + GLS+ Y++G V LALI +PC LQVV LFFIPE + +
Sbjct: 155 VRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL--- 211
Query: 221 ATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVG 280
G EKE +LQ L G ADIS E+ I++ F ++ + LFQR YA S+ +G
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 281 VGLMVMQPLVGSAAIAYYASYIFAAAG 307
VGLM++Q L GS+ + YY +F G
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGG 298
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 168/293 (57%), Gaps = 37/293 (12%)
Query: 36 QESDSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVRED 95
D T V+ S+ VA+C SF NG Y+S AE+ I +L LS+ +
Sbjct: 11 DRDDRRITACVILSTFVAVCSSFSYGCANG----------YTSGAETAIMKELDLSMAQ- 59
Query: 96 LLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQI------ 149
A + +G G+L +G++A + G+R + DLFCI GWL+IAF+K +
Sbjct: 60 --FSAFGSFLNLGGAVGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLG 117
Query: 150 ---------------PIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLAL 194
P+YI EI PK+VRGA++A+ LL SG+S+ Y GTV++ VLA+
Sbjct: 118 RISLGIGVGLTSYVVPVYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAV 177
Query: 195 IAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYT 254
I A+PC + V+G++FIPE + + A IG KE++ +L RL GK AD+S E+ +I+ T
Sbjct: 178 IGALPCFIPVIGIYFIPESPRWL---AKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMT 234
Query: 255 KTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAG 307
K + DS++ +FQ+ Y +L VG+GLM++Q L G++ I YY++ IF AG
Sbjct: 235 KMLEEDSKSSFCDMFQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAG 287
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 172/322 (53%), Gaps = 48/322 (14%)
Query: 7 LEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHNGS 66
LE GL P V +P + +G C T +V S+ VA+ GSF
Sbjct: 30 LESGLSRKSPREVKKP-----QNDDGECR------VTASVFLSTFVAVSGSFCTGCG--- 75
Query: 67 LIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQR 126
+G+SS A++GIT DL LSV E + + ++T+G + G++ +GK+AD+ G++
Sbjct: 76 -------VGFSSGAQAGITKDLSLSVAEYSMFGS---ILTLGGLIGAVFSGKVADVLGRK 125
Query: 127 CAMRLSDLFCILGWLAIA---------------------FSKQIPIYITEIAPKNVRGAY 165
M + FCI GWL +A FS IP+YI EIAPK+VRG++
Sbjct: 126 RTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSF 185
Query: 166 TATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGK 225
NQL+ G+S+ +++G + +L ++ VPC+ V LFFIPE + + A +G+
Sbjct: 186 VFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWL---AKLGR 242
Query: 226 EKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMV 285
+KE ++LQRL G DIS E+ IRD +N + LFQR YAY L +GVGLM
Sbjct: 243 DKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMF 302
Query: 286 MQPLVGSAAIAYYASYIFAAAG 307
+Q L GS+ + YYAS +F G
Sbjct: 303 LQQLCGSSGVTYYASSLFNKGG 324
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 180/328 (54%), Gaps = 42/328 (12%)
Query: 5 ESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHN 64
+ +E G I + + +P +T+ + S ES + V+FS+ VA+CGSF +
Sbjct: 7 KDVERGEIVNKVEDLGKPFLTHEDDEKESENNESYLM----VLFSTFVAVCGSFEFGSC- 61
Query: 65 GSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124
+GYS+P +S I DL LS+ E + + ++TIGA+ G++++GKI+D +G
Sbjct: 62 ---------VGYSAPTQSSIRQDLNLSLAEFSMFGS---ILTIGAMLGAVMSGKISDFSG 109
Query: 125 QRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRG 163
++ AMR S FCI GWLA+ F+K +P+YI EI+PKN+RG
Sbjct: 110 RKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRG 169
Query: 164 AYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI 223
T NQL++ G SV++L+G+++S LAL PC++ + GL FIPE + + A
Sbjct: 170 GLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWL---AKA 226
Query: 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGL 283
G EKE LQ+L GK ADI+ E+ I+ + + +A I L + Y S+ +GV L
Sbjct: 227 GHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSL 286
Query: 284 MVMQPLVGSAAIAYYASYIFAAAGKFTT 311
MV Q VG I +YAS F AG FT+
Sbjct: 287 MVFQQFVGINGIGFYASETFVKAG-FTS 313
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 168/305 (55%), Gaps = 39/305 (12%)
Query: 26 NNEISNGSCL--QESDSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESG 83
N + G L +E + TP ++FS+ + + SF IGY++ S
Sbjct: 4 ENNMEKGLLLAKKEDSANTTPLLIFSTFIIVSASFTFGA----------AIGYTADTMSS 53
Query: 84 ITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAI 143
I +DL LS+ + L + L T G + G++ + K A G + + ++DLFCI GWLAI
Sbjct: 54 IMSDLDLSLAQFSLFGS---LSTFGGMIGAIFSAKAASAFGHKMTLWVADLFCITGWLAI 110
Query: 144 AFSKQI---------------------PIYITEIAPKNVRGAYTATNQLLVASGLSVTYL 182
+ +K I P+YI EI PK+VRGA+T +NQLL G++V Y
Sbjct: 111 SLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVRGAFTFSNQLLQNCGVAVVYY 170
Query: 183 VGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTAD 242
G +S LA+I ++PC +QV+GLFFIPE + + ++ G++KE + LQ+L G+ D
Sbjct: 171 FGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAKK---GRDKECEEVLQKLRGRKYD 227
Query: 243 ISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYI 302
I E+ +I+ + K +S I LF++ YA+ L++G+GLM++Q L G+A I+ Y S +
Sbjct: 228 IVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIGIGLMLLQQLCGTAGISSYGSTL 287
Query: 303 FAAAG 307
F AG
Sbjct: 288 FKLAG 292
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 312 | ||||||
| 310877858 | 477 | putative ERD6-like transporter [Vitis vi | 0.814 | 0.532 | 0.498 | 4e-67 | |
| 298205028 | 476 | unnamed protein product [Vitis vinifera] | 0.814 | 0.533 | 0.498 | 4e-67 | |
| 359487977 | 920 | PREDICTED: sugar transporter ERD6-like 5 | 0.801 | 0.271 | 0.484 | 1e-65 | |
| 225451069 | 488 | PREDICTED: putative ERD6-like transporte | 0.913 | 0.584 | 0.429 | 3e-63 | |
| 298205031 | 517 | unnamed protein product [Vitis vinifera] | 0.913 | 0.551 | 0.429 | 3e-63 | |
| 310877856 | 475 | putative ERD6-like transporter [Vitis vi | 0.814 | 0.534 | 0.470 | 6e-63 | |
| 298205029 | 474 | unnamed protein product [Vitis vinifera] | 0.814 | 0.535 | 0.470 | 7e-63 | |
| 255542518 | 492 | D-xylose-proton symporter, putative [Ric | 0.855 | 0.542 | 0.451 | 9e-63 | |
| 255542516 | 476 | sugar transporter, putative [Ricinus com | 0.884 | 0.579 | 0.433 | 1e-62 | |
| 298205021 | 490 | unnamed protein product [Vitis vinifera] | 0.814 | 0.518 | 0.446 | 5e-61 |
| >gi|310877858|gb|ADP37160.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/291 (49%), Positives = 187/291 (64%), Gaps = 37/291 (12%)
Query: 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASL 102
T VFS+ VA+CG+F NG +GYSSPAESGI DLGLSV E + +
Sbjct: 35 TAVAVFSTAVAVCGAF----TNGC------AVGYSSPAESGIMDDLGLSVAEYSVFGS-- 82
Query: 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148
++TIG I G++I GKI DL G+R M SD+FC++GWLAIA +K
Sbjct: 83 -ILTIGGIVGAVICGKITDLFGRRGTMWFSDIFCLMGWLAIALAKDYWWLDLGRLSIGFG 141
Query: 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCL 201
+P+YI EI PKN+RG +T+ N L++ G S+T+ VGTVVS +LA+I A+PC+
Sbjct: 142 IGLICYVVPVYIAEIMPKNIRGGFTSANTLMICCGSSLTFFVGTVVSWRILAVIGAIPCI 201
Query: 202 LQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDS 261
LQV+GLFFIPE + + A +G+E L+ LQRL GK ADIS E+ +IR+YT+ F+ S
Sbjct: 202 LQVIGLFFIPESPRWL---AKVGQEARLEAALQRLRGKNADISQEAAEIREYTEAFQQLS 258
Query: 262 RAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFTTF 312
A I LFQR YA+SL VGVGLMV+Q GS AI YYAS IF +AG TTF
Sbjct: 259 EARILDLFQRRYAHSLIVGVGLMVLQQFGGSNAILYYASSIFESAGFSTTF 309
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205028|emb|CBI34335.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/291 (49%), Positives = 187/291 (64%), Gaps = 37/291 (12%)
Query: 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASL 102
T VFS+ VA+CG+F NG +GYSSPAESGI DLGLSV E + +
Sbjct: 35 TAVAVFSTAVAVCGAF----TNGC------AVGYSSPAESGIMDDLGLSVAEYSVFGS-- 82
Query: 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148
++TIG I G++I GKI DL G+R M SD+FC++GWLAIA +K
Sbjct: 83 -ILTIGGIVGAVICGKITDLFGRRGTMWFSDIFCLMGWLAIALAKDYWWLDLGRLSIGFG 141
Query: 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCL 201
+P+YI EI PKN+RG +T+ N L++ G S+T+ VGTVVS +LA+I A+PC+
Sbjct: 142 IGLICYVVPVYIAEIMPKNIRGGFTSANTLMICCGSSLTFFVGTVVSWRILAVIGAIPCI 201
Query: 202 LQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDS 261
LQV+GLFFIPE + + A +G+E L+ LQRL GK ADIS E+ +IR+YT+ F+ S
Sbjct: 202 LQVIGLFFIPESPRWL---AKVGQEARLEAALQRLRGKNADISQEAAEIREYTEAFQQLS 258
Query: 262 RAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFTTF 312
A I LFQR YA+SL VGVGLMV+Q GS AI YYAS IF +AG TTF
Sbjct: 259 EARILDLFQRRYAHSLIVGVGLMVLQQFGGSNAILYYASSIFESAGFSTTF 309
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487977|ref|XP_002263553.2| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 185/293 (63%), Gaps = 43/293 (14%)
Query: 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASL 102
T VFS+ VA+CG+F NG +GYSSPAESGI DLGLSV E + +
Sbjct: 35 TAVAVFSTAVAVCGAF----TNGC------AVGYSSPAESGIMDDLGLSVAEYSVFGS-- 82
Query: 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK--------------- 147
++TIG I G++I GKI DL G+R M SD+FC++GWLAIA +K
Sbjct: 83 -ILTIGGIVGAVICGKITDLFGRRGTMWFSDIFCLMGWLAIALAKCTACWKDYWWLDLGR 141
Query: 148 ------------QIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALI 195
+P+YI EI PKN+RG +T+ N L++ G S+T+ VGTVVS +LA+I
Sbjct: 142 LSIGFGIGLICYVVPVYIAEIMPKNIRGGFTSANTLMICCGSSLTFFVGTVVSWRILAVI 201
Query: 196 AAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTK 255
A+PC+LQV+GLFFIPE + + A +G+E L+ LQRL GK ADIS E+ +IR+YT+
Sbjct: 202 GAIPCILQVIGLFFIPESPRWL---AKVGQEARLEAALQRLRGKNADISQEAAEIREYTE 258
Query: 256 TFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGK 308
F+ S A I LFQR YA+SL VGVGLMV+Q GS AI YYAS IF +AG+
Sbjct: 259 AFQQLSEARILDLFQRRYAHSLIVGVGLMVLQQFGGSNAILYYASSIFESAGR 311
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451069|ref|XP_002263418.1| PREDICTED: putative ERD6-like transporter [Vitis vinifera] gi|310877850|gb|ADP37156.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 199/324 (61%), Gaps = 39/324 (12%)
Query: 5 ESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHN 64
ES+EEG + P + +P N S + S AT +V S+L+A+CGS++ T
Sbjct: 4 ESIEEGQLSSPLIVADKP--CENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGT-- 59
Query: 65 GSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124
+GYSSPAESGI +LGLS+ E L + ++TIGA+ G++++G+IADL G
Sbjct: 60 --------AVGYSSPAESGIMDELGLSLAEYSLFGS---ILTIGAMLGAIVSGRIADLIG 108
Query: 125 QRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRG 163
+R AM S++FCI+GWLA+ FSK +P+YI EI PKN+RG
Sbjct: 109 RRGAMGFSEVFCIMGWLAVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRG 168
Query: 164 AYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI 223
+T +QL++ G S+T+L+GT+V+ +LALI +PCL+Q+VGL FIPE + + R
Sbjct: 169 GFTTVHQLMICCGSSITFLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARS--- 225
Query: 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGL 283
G+ ++ + LQRL G+ A IS E+ +I+DY++T + S A I LFQ YA SL VGVGL
Sbjct: 226 GRWQDCEDALQRLRGEGAIISQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGL 285
Query: 284 MVMQPLVGSAAIAYYASYIFAAAG 307
MV+Q G AI +YAS IF +AG
Sbjct: 286 MVLQQFGGVNAIVFYASAIFVSAG 309
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205031|emb|CBI34338.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 199/324 (61%), Gaps = 39/324 (12%)
Query: 5 ESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHN 64
ES+EEG + P + +P N S + S AT +V S+L+A+CGS++ T
Sbjct: 33 ESIEEGQLSSPLIVADKP--CENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGT-- 88
Query: 65 GSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124
+GYSSPAESGI +LGLS+ E L + ++TIGA+ G++++G+IADL G
Sbjct: 89 --------AVGYSSPAESGIMDELGLSLAEYSLFGS---ILTIGAMLGAIVSGRIADLIG 137
Query: 125 QRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRG 163
+R AM S++FCI+GWLA+ FSK +P+YI EI PKN+RG
Sbjct: 138 RRGAMGFSEVFCIMGWLAVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRG 197
Query: 164 AYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI 223
+T +QL++ G S+T+L+GT+V+ +LALI +PCL+Q+VGL FIPE + + R
Sbjct: 198 GFTTVHQLMICCGSSITFLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARS--- 254
Query: 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGL 283
G+ ++ + LQRL G+ A IS E+ +I+DY++T + S A I LFQ YA SL VGVGL
Sbjct: 255 GRWQDCEDALQRLRGEGAIISQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGL 314
Query: 284 MVMQPLVGSAAIAYYASYIFAAAG 307
MV+Q G AI +YAS IF +AG
Sbjct: 315 MVLQQFGGVNAIVFYASAIFVSAG 338
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877856|gb|ADP37159.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 184/291 (63%), Gaps = 37/291 (12%)
Query: 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASL 102
T AVVFS+ VA+C SF Y GY+SPAESGI DL LSV E +
Sbjct: 36 TAAVVFSTAVAVCASF----------TYGCAAGYTSPAESGIIDDLTLSVAEYSFFGS-- 83
Query: 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148
++TIG I G+ I+GKI DL G+R M S++FC +GWLAIAF+K
Sbjct: 84 -ILTIGGILGAAISGKITDLIGRRGTMWFSEIFCTMGWLAIAFAKDHWWLDLGRLSIGFG 142
Query: 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCL 201
+P+YI EI P+N+RG +T+ + L++ G S+T+ VGT++S +LALI A+PC+
Sbjct: 143 IGLICYVVPVYIAEITPQNIRGGFTSAHMLMICCGFSLTFFVGTIISWRILALIGAIPCI 202
Query: 202 LQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDS 261
LQV+GLFFIPE + + A +G+E++L L+RL G ADIS E+ +I+DYT+ F++ S
Sbjct: 203 LQVIGLFFIPESPRWL---AKVGREEDLVAALRRLRGVNADISQEAAEIQDYTEAFQHLS 259
Query: 262 RAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFTTF 312
A I L QR YA+SL VGVGLMV+Q GS AIAYYAS IF +A +TF
Sbjct: 260 EARILDLLQRRYAHSLIVGVGLMVLQQFGGSNAIAYYASAIFESADFSSTF 310
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205029|emb|CBI34336.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 184/291 (63%), Gaps = 37/291 (12%)
Query: 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASL 102
T AVVFS+ VA+C SF Y GY+SPAESGI DL LSV E +
Sbjct: 36 TAAVVFSTAVAVCASF----------TYGCAAGYTSPAESGIIDDLTLSVAEYSFFGS-- 83
Query: 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148
++TIG I G+ I+GKI DL G+R M S++FC +GWLAIAF+K
Sbjct: 84 -ILTIGGILGAAISGKITDLIGRRGTMWFSEIFCTMGWLAIAFAKDHWWLDLGRLSIGFG 142
Query: 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCL 201
+P+YI EI P+N+RG +T+ + L++ G S+T+ VGT++S +LALI A+PC+
Sbjct: 143 IGLICYVVPVYIAEITPQNIRGGFTSAHMLMICCGFSLTFFVGTIISWRILALIGAIPCI 202
Query: 202 LQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDS 261
LQV+GLFFIPE + + A +G+E++L L+RL G ADIS E+ +I+DYT+ F++ S
Sbjct: 203 LQVIGLFFIPESPRWL---AKVGREEDLVAALRRLRGVNADISQEAAEIQDYTEAFQHLS 259
Query: 262 RAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFTTF 312
A I L QR YA+SL VGVGLMV+Q GS AIAYYAS IF +A +TF
Sbjct: 260 EARILDLLQRRYAHSLIVGVGLMVLQQFGGSNAIAYYASAIFESADFSSTF 310
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542518|ref|XP_002512322.1| D-xylose-proton symporter, putative [Ricinus communis] gi|223548283|gb|EEF49774.1| D-xylose-proton symporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/308 (45%), Positives = 190/308 (61%), Gaps = 41/308 (13%)
Query: 21 RPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPA 80
+PV+ N IS + + DS+ TP+VVF+++VAICGSF G +SSPA
Sbjct: 14 QPVVFGNGIS----IDDDDSLVTPSVVFNTMVAICGSFGTGCATG----------FSSPA 59
Query: 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGW 140
+SGI DLG+SV + + +MTIG + G+L+NG +ADL G+R M +S+ F I GW
Sbjct: 60 QSGIMEDLGMSVAAYSVFGS---VMTIGGVIGALVNGTMADLIGRRYTMWVSEFFFITGW 116
Query: 141 LAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSV 179
LAIAF++ +PIYI EI PK++RG +TA NQLL + GLS+
Sbjct: 117 LAIAFTQVAWLLDFGRLLMGIGMGITLYVVPIYIAEITPKHIRGRFTAANQLLTSCGLSL 176
Query: 180 TYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGK 239
Y VGT++S LALI AVP LQ VG+ FIPE + + A +G+E+EL+ TLQ L GK
Sbjct: 177 IYFVGTIISWHTLALIGAVPFALQAVGILFIPESPRWL---AKVGRERELEGTLQYLRGK 233
Query: 240 TADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYA 299
AD+S E+ +IR+YT TF+ S+ LFQ YA++L VG+G+++ Q G AIAYYA
Sbjct: 234 NADVSEEAANIRNYTGTFQGHSQTRFLDLFQFRYAHTLIVGIGILLFQQFGGINAIAYYA 293
Query: 300 SYIFAAAG 307
S IF AG
Sbjct: 294 SSIFGKAG 301
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542516|ref|XP_002512321.1| sugar transporter, putative [Ricinus communis] gi|223548282|gb|EEF49773.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 192/323 (59%), Gaps = 47/323 (14%)
Query: 5 ESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHN 64
+EE L+P +P +GS L +++S TPAVVFS+++AICGSF
Sbjct: 7 REVEEELLPKSTLAIPI---------SGS-LPQNESSVTPAVVFSTIIAICGSFGSGCAT 56
Query: 65 GSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124
G YSSPAESGI DLG+SV + + ++T G + GSL++GK+AD+ G
Sbjct: 57 G----------YSSPAESGIREDLGMSVAAYSVFGS---VITAGGVMGSLVSGKMADVIG 103
Query: 125 QRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRG 163
+R M +S+LF I+GW AI + +P+YITEI PKNVRG
Sbjct: 104 RRSTMWVSELFFIIGWFAIVSGQAAWLLDLGRLLMGIGVGIIGFVVPVYITEITPKNVRG 163
Query: 164 AYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI 223
A+ ATNQ ++ G+S+ + +GTVVS LALI A PC L VG+FFIPE + + A I
Sbjct: 164 AFAATNQFMICCGISLAFFIGTVVSWRTLALICAAPCALHAVGVFFIPESPRWL---AKI 220
Query: 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGL 283
G+ KE++ LQRL GK AD+S E+ I DYT TF+ S+AG+ LFQ YA++L+ G+G+
Sbjct: 221 GRVKEVEVILQRLRGKKADVSQEAASIIDYTDTFQGHSKAGLLDLFQWRYAHALTAGIGI 280
Query: 284 MVMQPLVGSAAIAYYASYIFAAA 306
M Q G+ AIA+YAS IF A
Sbjct: 281 MAFQQFGGTNAIAFYASSIFEEA 303
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205021|emb|CBI34328.3| unnamed protein product [Vitis vinifera] gi|310877870|gb|ADP37166.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 178/291 (61%), Gaps = 37/291 (12%)
Query: 38 SDSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLL 97
S S T AVVFS+L+A+CGSF+ T +GYSSPAESGI DLGLS E +
Sbjct: 44 SSSFFTIAVVFSTLIAVCGSFIFGT----------AVGYSSPAESGIVNDLGLSTAEYSI 93
Query: 98 IEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------- 148
+ ++TIG + G++++GKIADL G+R AM +S+ FC +GW+AIAFS+
Sbjct: 94 FGS---ILTIGGMIGAVMSGKIADLIGRRGAMWVSEFFCTIGWIAIAFSEGAWLLDIGRL 150
Query: 149 ------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIA 196
+P+YI EI PKN+RG ++ N L ++ G SV Y G VV+ +LALI
Sbjct: 151 LIGCGIGALSYVVPVYIAEITPKNLRGRFSGLNMLFISCGTSVMYFTGGVVTWRILALIG 210
Query: 197 AVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKT 256
+PCLL + GLFF+PE + + A +G+EKE + +LQ L GK DIS E+ DI+DYT+
Sbjct: 211 TIPCLLPLFGLFFVPESPRWL---AKVGREKEFEASLQHLRGKDTDISFEASDIKDYTRY 267
Query: 257 FKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAG 307
+ S I +FQR YAY L+VGVGLM++Q G A+Y S I +AG
Sbjct: 268 LEGLSETRIIDIFQRKYAYCLTVGVGLMIVQEFGGLNGFAFYTSSILDSAG 318
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 312 | ||||||
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.448 | 0.299 | 0.468 | 5.3e-45 | |
| TAIR|locus:2096234 | 458 | AT3G05160 [Arabidopsis thalian | 0.448 | 0.305 | 0.454 | 2.9e-44 | |
| TAIR|locus:2036039 | 464 | AT1G08890 [Arabidopsis thalian | 0.483 | 0.325 | 0.396 | 1.5e-41 | |
| TAIR|locus:2138927 | 482 | AT4G04750 [Arabidopsis thalian | 0.509 | 0.329 | 0.419 | 1.7e-39 | |
| TAIR|locus:2036009 | 462 | AT1G08900 [Arabidopsis thalian | 0.483 | 0.326 | 0.376 | 1.9e-38 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.788 | 0.518 | 0.364 | 2e-33 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.804 | 0.525 | 0.337 | 3.2e-33 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.846 | 0.561 | 0.347 | 4.1e-33 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.759 | 0.511 | 0.365 | 1.8e-30 | |
| TAIR|locus:2092379 | 488 | AT3G20460 [Arabidopsis thalian | 0.801 | 0.512 | 0.350 | 1.3e-29 |
| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 67/143 (46%), Positives = 101/143 (70%)
Query: 149 IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLF 208
+P+YI EI PK+VRGA+TA+NQLL SG+S+ Y GTV++ V+A+I A+PC+LQ +G+F
Sbjct: 141 VPVYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIF 200
Query: 209 FIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYL 268
FIPE + + A I KE++++L RL GK D+S E+ +I+ TK + DS++ +
Sbjct: 201 FIPESPRWL---AKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDM 257
Query: 269 FQRNYAYSLSVGVGLMVMQPLVG 291
FQ+ Y +L VG+GLM++Q L G
Sbjct: 258 FQKKYRRTLVVGIGLMLIQQLSG 280
|
|
| TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 65/143 (45%), Positives = 99/143 (69%)
Query: 149 IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLF 208
+P+YI EI PK+VRGA++A+ LL SG+S+ Y GTV++ VLA+I A+PC + V+G++
Sbjct: 132 VPVYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGIY 191
Query: 209 FIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYL 268
FIPE + + A IG KE++ +L RL GK AD+S E+ +I+ TK + DS++ +
Sbjct: 192 FIPESPRWL---AKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMTKMLEEDSKSSFCDM 248
Query: 269 FQRNYAYSLSVGVGLMVMQPLVG 291
FQ+ Y +L VG+GLM++Q L G
Sbjct: 249 FQKKYRRTLVVGIGLMLIQQLSG 271
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| TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 61/154 (39%), Positives = 97/154 (62%)
Query: 138 LGWLAIAFSKQIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAA 197
LG+ S +P+YI EI PK RG ++ +NQLL + G+S+ + G LAL++A
Sbjct: 127 LGFGVGLISYVVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSA 186
Query: 198 VPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTF 257
+PC +Q++ LFFIPE + + A G+E+EL+ TL+RL G+ DI E+ +IR+ +T
Sbjct: 187 IPCGIQMICLFFIPESPRWL---AMYGRERELEVTLKRLRGENGDILEEAAEIRETVETS 243
Query: 258 KNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVG 291
+ +SR+G+ LF A+ L +G+GLM++Q G
Sbjct: 244 RRESRSGLKDLFNMKNAHPLIIGLGLMLLQQFCG 277
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| TAIR|locus:2138927 AT4G04750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 70/167 (41%), Positives = 104/167 (62%)
Query: 129 MRLSDLFCILGWLAIAFSKQI-PIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV 187
+RL DL +L +++ S + PIYI+E+AP+N+RGA ++ QL V GLS Y +GT V
Sbjct: 126 VRLLDLGRLLQGISVGISSYLGPIYISELAPRNLRGAASSLMQLFVGVGLSAFYALGTAV 185
Query: 188 SCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMES 247
+ LA++ ++P L+ + LFFIPE + + A +G+EKE++ L L G +D+S E+
Sbjct: 186 AWRSLAILGSIPSLVVLPLLFFIPESPRWL---AKVGREKEVEGVLLSLRGAKSDVSDEA 242
Query: 248 PDIRDYTKTFKN---DSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVG 291
I +YTK + DSR G F LFQR YA L++GV L+ M L G
Sbjct: 243 ATILEYTKHVEQQDIDSR-GFFKLFQRKYALPLTIGVVLISMPQLGG 288
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| TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 58/154 (37%), Positives = 95/154 (61%)
Query: 138 LGWLAIAFSKQIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAA 197
LG+ S +P+YI EI PK RG ++ +NQLL G+S+ + G LAL++A
Sbjct: 125 LGFGVGLISYVVPVYIAEITPKTFRGGFSYSNQLLQCLGISLMFFTGNFFHWRTLALLSA 184
Query: 198 VPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTF 257
+P QV+ LFFIPE + + A G+++EL+ +L++L G+ +DI E+ +IR+ +
Sbjct: 185 IPSAFQVICLFFIPESPRWL---AMYGQDQELEVSLKKLRGENSDILKEAAEIRETVEIS 241
Query: 258 KNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVG 291
+ +S++GI LF A+SL +G+GLM++Q G
Sbjct: 242 RKESQSGIRDLFHIGNAHSLIIGLGLMLLQQFCG 275
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| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 98/269 (36%), Positives = 147/269 (54%)
Query: 37 ESDSVATPAVVFSSLVAICGSFL--MAT------HNGSLIDYFFQIGYSSPAESGITADL 88
+S+ T V+ S+ VA+CGSF +AT G + D I S G A L
Sbjct: 22 DSECRITACVILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAF--GSFATL 79
Query: 89 GLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCI-LGWL--AIAF 145
G ++ + L M IG G++ +TG ++ + G + I F
Sbjct: 80 GAAIGA---LFCGNLAMVIGR-RGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGF 135
Query: 146 ---SKQIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLL 202
S +P+YI EI PK+VRG +T +NQLL +GL++ Y G ++ LAL+ A+PC +
Sbjct: 136 GLTSYVVPVYIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFI 195
Query: 203 QVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSR 262
QV+GLFF+PE + + A +G +KEL+ +L RL G+ ADIS E+ +I+ TK +NDS+
Sbjct: 196 QVIGLFFVPESPRWL---AKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSK 252
Query: 263 AGIFYLFQRNYAYSLSVGVGLMVMQPLVG 291
+ LFQR Y Y+L VG+GLM++Q G
Sbjct: 253 SSFSDLFQRKYRYTLVVGIGLMLIQQFSG 281
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| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 89/264 (33%), Positives = 140/264 (53%)
Query: 37 ESDSVATPAVVFSSLVAICGSFLMATH----NGSLIDYFFQIGYSSPAESGITADLGLSV 92
+S+ T V+ S+ +A+CGSF +G+ I + S S + L
Sbjct: 26 DSECRITACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGA 85
Query: 93 REDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAF-----SK 147
L + ++ +G ++ + + A ++ G ++ S
Sbjct: 86 AIGALFSGKMAII-LGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISY 144
Query: 148 QIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGL 207
+P+YI EI+PK+VRG +T TNQLL SGL++ Y G ++ +LAL+ A+PC +QV+GL
Sbjct: 145 VVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGL 204
Query: 208 FFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFY 267
FF+PE + + A +G +KEL+ +L RL G ADIS E+ DI TK +NDS++
Sbjct: 205 FFVPESPRWL---AKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCD 261
Query: 268 LFQRNYAYSLSVGVGLMVMQPLVG 291
LFQR Y Y+L VG+GLM++Q G
Sbjct: 262 LFQRKYRYTLVVGIGLMLIQQFSG 285
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| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 101/291 (34%), Positives = 151/291 (51%)
Query: 14 DPPFLVPRPVITNNEISNGSCLQESDSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQ 73
D L P + N E N Q+S + T ++ ++ VA+ GSF+ GS I Y
Sbjct: 6 DEANLAPETSLINKE--N----QDSSATITTTLLLTTFVAVSGSFVF----GSAIGYSSP 55
Query: 74 IGYSSPAESGIT-ADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLS 132
+ E ++ A+ L L I A + G I+ + + C +
Sbjct: 56 VQSDLTKELNLSVAEYSL-FGSILTIGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWL 114
Query: 133 DLFC--ILGWLAIA----------FSKQIPIYITEIAPKNVRGAYTATNQLLVASGLSVT 180
++ + WL + FS +P+YI EI PK +RG +T +QLL+ G+SVT
Sbjct: 115 AIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVT 174
Query: 181 YLVGTVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKT 240
YL+G+ + +LALI +PC++Q++GLF IPE + + A +GK +E + LQRL G++
Sbjct: 175 YLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWL---AKVGKWEEFEIALQRLRGES 231
Query: 241 ADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVG 291
ADIS ES +I+DYT+ + S I LFQ YA SL VGVGLMV+Q G
Sbjct: 232 ADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFGG 282
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| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 95/260 (36%), Positives = 143/260 (55%)
Query: 46 VVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLL-L 104
V S+ VA+CGSF GS Y + + +T S+ LL +++
Sbjct: 28 VYLSTFVAVCGSFAF----GSCAGYSSPAQAAIRNDLSLTI-AEFSLFGSLLTFGAMIGA 82
Query: 105 MTIGAISGSLINGKIA-DLTGQRCAMR-LSDLFCI------LGWLAI-----AFSKQIPI 151
+T G I+ L+ K A ++ C + L+ +F LG LA AFS +PI
Sbjct: 83 ITSGPIA-DLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPI 141
Query: 152 YITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFFIP 211
+I EIAPK RGA T NQ+L+ +G+SV++++GT+V+ VLALI +PC +GLFFIP
Sbjct: 142 FIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIP 201
Query: 212 EIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQR 271
E + + A +G++ E + L++L GK ADIS E+ +I+DY +T + +A + LFQR
Sbjct: 202 ESPRWL---AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQR 258
Query: 272 NYAYSLSVGVGLMVMQPLVG 291
Y S+ + GLMV Q G
Sbjct: 259 RYIRSVLIAFGLMVFQQFGG 278
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| TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 93/265 (35%), Positives = 142/265 (53%)
Query: 37 ESDSVATPAVVFSSLVAICGSFLMATHNG--SLIDYFFQIGYS-SPAES---GITADLGL 90
E D T ++F++ A+CG+F T G S G + S AE G +G
Sbjct: 44 EEDGPVTLILLFTTFTALCGTFSYGTAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGG 103
Query: 91 SVREDLLIEASLLLMTIGA--ISGSL-INGKIADLTGQRC-AMRLSDLFCILGWLAIAFS 146
V + + + + GA +S S + G + Q ++ + LF LG A S
Sbjct: 104 LVGAAMSGKLADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIGRLF--LGVAAGVAS 161
Query: 147 KQIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVG 206
+P+YI EIAPK VRG ++A N L++ + ++VTYL+G+V+S LALI+ VPC+ + VG
Sbjct: 162 YVVPVYIVEIAPKKVRGTFSAINSLVMCASVAVTYLLGSVISWQKLALISTVPCVFEFVG 221
Query: 207 LFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIF 266
LFFIPE + + R G+ KE + +LQRL G DI+ E+ +I+ Y + G F
Sbjct: 222 LFFIPESPRWLSRN---GRVKESEVSLQRLRGNNTDITKEAAEIKKYMDNLQEFKEDGFF 278
Query: 267 YLFQRNYAYSLSVGVGLMVMQPLVG 291
LF Y+ ++VG+GL+V+Q L G
Sbjct: 279 DLFNPRYSRVVTVGIGLLVLQQLGG 303
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00006087001 | SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (477 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 312 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 7e-19 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-16 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 6e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 7e-19
Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 39/289 (13%)
Query: 51 LVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAI 110
LVA G FL G + + I + G +G +L + + ++G +
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFF--KRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 111 SGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------- 148
GSL GK+ D G++ ++ + ++ ++G L F+K
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 149 -IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVS--------CLVLALIAAVP 199
+P+YI+EIAPK +RGA + QL + G+ V ++G ++ + L L VP
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGL-QFVP 179
Query: 200 CLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRD-YTKTFK 258
+L ++GL F+PE + ++ + GK +E L +L G +D+ E + +D ++ +
Sbjct: 180 AILLLIGLLFLPESPRWLVLK---GKLEEARAVLAKLRG-VSDVDQEIQEEKDSLERSVE 235
Query: 259 NDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAG 307
+ + + + L +GV L + Q L G AI YY+ IF G
Sbjct: 236 AEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG 284
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 68/282 (24%), Positives = 108/282 (38%), Gaps = 50/282 (17%)
Query: 72 FQIGYSSPAESGITADLGLSVREDLLIEASLL---------LMTIGAISGSLINGKIADL 122
GY + G A + S + +G G+L G ++D
Sbjct: 38 LMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR 97
Query: 123 TGQRCAMRLSDLFCILG--------------WLAIA----------FSKQIPIYITEIAP 158
G++ ++ + L ++G L + S +P+Y++EIAP
Sbjct: 98 FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP 157
Query: 159 KNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLAL-------IAAVPCLLQVVGLFFIP 211
K +RGA T+ QL + G+ V Y G+ L L + +P L +GLFF+P
Sbjct: 158 KALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLP 217
Query: 212 EIAQSIIRRATIGKEKELDTTLQRLMGKT------ADISMESPDIRDYTKTFKNDSRAGI 265
E + ++ + G+ +E +L RL G + D R K S +
Sbjct: 218 ESPRWLVGK---GRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSL 274
Query: 266 FYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAG 307
F +R L +GV L Q G AI YY+ IF AG
Sbjct: 275 FSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAG 315
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 30/188 (15%)
Query: 137 ILGWLAIAFSKQI-PIYITEIAPKNVRGAYTATNQLLVASGLSVTYLV------GTVVSC 189
I+G + + + + P+YI EIAP ++RG + NQ + G V Y V S
Sbjct: 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASW 187
Query: 190 LV------LALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADI 243
L + A+P LL ++ L+F+PE + + + GK+++ + L+++MG T
Sbjct: 188 LNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL---MSRGKQEQAEGILRKIMGNT-LA 243
Query: 244 SMESPDIRDYTKTFKNDSRA----GIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYA 299
+ +I+ + G+ + +GV L V Q VG + YYA
Sbjct: 244 TQALQEIKHSLDHGRKTGGKLLMFGVGVIV---------IGVMLSVFQQFVGINVVLYYA 294
Query: 300 SYIFAAAG 307
IF G
Sbjct: 295 PEIFKTLG 302
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Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 28/167 (16%)
Query: 70 YFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAM 129
G SPA + DLGLS + ++G GSL+ G ++D G+R +
Sbjct: 11 SGLDRGLLSPALPLLAEDLGLS---ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL 67
Query: 130 RLSDLFCILGWLAIAFSKQI---------------------PIYITEIAPKNVRGAYTAT 168
L L LG L +AF+ + I E P RG
Sbjct: 68 LLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGL 127
Query: 169 NQLLVASGLSVTYLVGTVVSCL----VLALIAAVPCLLQVVGLFFIP 211
G + L+G +++ L LI A+ LL + L F+
Sbjct: 128 FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 43/163 (26%)
Query: 104 LMTIGAISGSLINGKIADLTGQRCAMRLSDLF-CILGWLAIAFSKQIPIY---------- 152
+G + GS + G ++D G++ + LS L + G L AFS ++
Sbjct: 135 CFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT-AFSPNYTVFLVFRLLVGMG 193
Query: 153 -----------ITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLV---------L 192
TE PK R +V + + V + +G V+ LV L
Sbjct: 194 IGGIWVQAVVLNTEFLPKKQRA--------IVGTLIQVFFSLGLVLLPLVAYFIPDWRWL 245
Query: 193 ALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQR 235
L ++P L + +F+PE + +I + G+ +E LQR
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQ---GRIEEALKILQR 285
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 312 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.97 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.94 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.88 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.87 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.83 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.82 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.82 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.81 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.8 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.79 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.78 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.78 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.78 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.78 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.78 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.77 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.74 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.74 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.74 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.74 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.73 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.73 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.72 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.72 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.71 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.7 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.7 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.69 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.69 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.68 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.68 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.68 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.67 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.67 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.67 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.67 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.66 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.66 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.65 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.64 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.64 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.64 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.64 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.63 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.62 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.62 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.62 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.62 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.61 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.61 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.6 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.6 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.58 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.58 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.56 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.56 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.55 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.55 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.55 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.55 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.54 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.54 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.53 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.53 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.52 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.52 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.52 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.52 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.52 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.5 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.47 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.45 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.43 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.42 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.41 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.39 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.38 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.38 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.36 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.32 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.28 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.28 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.28 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.27 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.25 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.25 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.21 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.2 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.19 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.16 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.16 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.13 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.12 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.12 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.12 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.12 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.11 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.1 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.07 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.06 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.04 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.03 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.03 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.01 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.01 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.98 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.93 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.91 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.85 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.84 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.84 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.83 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.82 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.81 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.81 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.81 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.8 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.8 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.8 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.79 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.79 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.78 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.76 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.76 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.75 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.75 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.73 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.73 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.71 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.69 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.66 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.64 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.63 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.61 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.59 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.59 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.59 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.58 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.55 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.55 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.54 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.53 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.51 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.5 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.48 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.48 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.47 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.47 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.45 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.44 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.44 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.44 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.43 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.43 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.41 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.39 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.38 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.38 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.37 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.36 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.33 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.33 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.29 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.28 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.27 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.27 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.26 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.25 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.24 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.23 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.23 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.23 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.22 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.21 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.19 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.18 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.18 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.18 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.17 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.14 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.13 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.13 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.13 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.13 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.12 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.1 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.07 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.07 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.01 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.99 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.98 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.97 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.95 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.94 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.92 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.82 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.77 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.75 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.72 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.72 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.66 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.59 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 97.57 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.5 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.47 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.47 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.43 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.4 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.38 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.37 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.31 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.3 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.24 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.18 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.12 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.1 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.06 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 96.97 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.85 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 96.81 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.71 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.5 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 96.37 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.15 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.84 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.81 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 95.72 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 95.7 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.63 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.62 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.51 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 95.12 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.03 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.98 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 94.66 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.98 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.49 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 93.44 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 92.76 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 92.42 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 92.3 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 90.87 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.89 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 87.45 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.22 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 83.42 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 83.17 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 81.7 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.29 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=225.20 Aligned_cols=258 Identities=28% Similarity=0.405 Sum_probs=208.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccc--------cccccCCcccc--h-hHHHHHHHHHHHH
Q 048699 40 SVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESG--------ITADLGLSVRE--D-LLIEASLLLMTIG 108 (312)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~-~~~~~~~~~~~~~ 108 (312)
++++++....++.+.++.+.+|| ..+.++...+. +.+.+|.+.++ . .+.+..++.+.+|
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy----------~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG 72 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGY----------NIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIG 72 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhh----------hheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Confidence 45667777777777788899999 77777765443 33456633332 2 1233344999999
Q ss_pred HHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------------------cceeeeecCCCCchhH
Q 048699 109 AISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------------------IPIYITEIAPKNVRGA 164 (312)
Q Consensus 109 ~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~i~e~~~~~~r~~ 164 (312)
.++|++..|+++||+|||..++++.++..++.++..++.. .+.|+.|..|.+.||.
T Consensus 73 ~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~ 152 (485)
T KOG0569|consen 73 GMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGA 152 (485)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccH
Confidence 9999999999999999999999999988888877766544 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHh-cCCHHHHHHHHHHHh
Q 048699 165 YTATNQLLVASGLSVTYLVG------TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRAT-IGKEKELDTTLQRLM 237 (312)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~-~~~~~~~~~~~~~~~ 237 (312)
...+.+++..+|.++++.++ ..-.|++.+.+..+++++..+...++||||||+ .. ++++++|++.+++++
T Consensus 153 ~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~L---l~~k~~~~~A~~sl~~y~ 229 (485)
T KOG0569|consen 153 LGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYL---LIKKGDEEEARKALKFYR 229 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchH---HHHcCCHHHHHHHHHHHh
Confidence 99999999999999997776 333699999999999999999999999999999 87 899999999999999
Q ss_pred CCCCChhhhhHHHHHhhhhhcc--ccccchhhhccc-cchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHcCCCCC
Q 048699 238 GKTADISMESPDIRDYTKTFKN--DSRAGIFYLFQR-NYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFTT 311 (312)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 311 (312)
+.+++ +++.++..++.++++. +++.++++++++ ..+++..+++++..+++++|.+.+.+|...+++++|++..
T Consensus 230 G~~~~-~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~ 305 (485)
T KOG0569|consen 230 GKEDV-EAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE 305 (485)
T ss_pred CCCcc-hhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH
Confidence 98743 3333333333333222 267789999998 6888889999999999999999999999999999998764
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=206.54 Aligned_cols=254 Identities=27% Similarity=0.441 Sum_probs=208.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhhccCccccccce--eeeeCCCccccccccC---Ccc----cchhHHHHHHHHHHHHHHH
Q 048699 41 VATPAVVFSSLVAICGSFLMATHNGSLIDYFFQ--IGYSSPAESGITADLG---LSV----REDLLIEASLLLMTIGAIS 111 (312)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~i 111 (312)
..........+...++.+.+|+ + .+..+.....+.+... ... .+.+++. +...++.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~----------~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~---s~~~lga~~ 104 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGY----------DGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLT---SILNLGALV 104 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCc----------ccccccchhhHHHHHhcccccccccchhHHHHHHHH---HHHHHHHHH
Confidence 3445666777777888888898 5 4455555555555322 112 2347888 999999999
Q ss_pred HHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHH
Q 048699 112 GSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQ 170 (312)
Q Consensus 112 g~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~ 170 (312)
|++++|+++|++|||+.++++.++..++.++++++++ .+.|++|..|++.||...+..+
T Consensus 105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~ 184 (513)
T KOG0254|consen 105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQ 184 (513)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHH
Confidence 9999999999999999999999999999999999988 7889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhC-CCCChh
Q 048699 171 LLVASGLSVTYLVGTVV-----SCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMG-KTADIS 244 (312)
Q Consensus 171 ~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 244 (312)
....+|.+++..++... +||..+.+..+++++..+..+++||+|+|+ ..+++.+++++.++++++ .+.+..
T Consensus 185 l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L---~~~g~~~~a~~~l~~l~g~~~~~~~ 261 (513)
T KOG0254|consen 185 LFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWL---IEKGRLEEAKRSLKRLRGLSPEDVE 261 (513)
T ss_pred HHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH---HHcCChHHHHHHHHHHhCCCCcchH
Confidence 99999999997777444 799999999999888887788999999999 999999999999999998 445666
Q ss_pred hhhHHHHHhh-hh-hccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHcCCCC
Q 048699 245 MESPDIRDYT-KT-FKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFT 310 (312)
Q Consensus 245 ~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 310 (312)
.+.++++... .+ +..+.+..+++++++..+++..+.+.+..+++++|++.+.+|.+.+++..|.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~ 329 (513)
T KOG0254|consen 262 VELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS 329 (513)
T ss_pred HHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC
Confidence 6666665221 11 112233357888887788889999999999999999999999999999999875
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=216.26 Aligned_cols=247 Identities=13% Similarity=0.121 Sum_probs=196.0
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh
Q 048699 42 ATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD 121 (312)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 121 (312)
..+..+.++++++++.+..++ +...++..+|.+.++++++..+.+++. +++.++.++|++++|+++|
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~----------d~~~is~ilp~i~~~~gls~~~~g~l~---s~~~lG~iiG~li~G~LsD 227 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGV----------EVFVVGFVLPSAEKDLCIPDSGKGMLG---LIVYLGMMVGAFFWGGLAD 227 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888889 888888889999999999999999999 9999999999999999999
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHH
Q 048699 122 LTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVT 180 (312)
Q Consensus 122 r~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~ 180 (312)
|+|||+++++++++.+++.++++++++ .+.++.|++|++.|++.+++..++..+|.+++
T Consensus 228 R~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila 307 (742)
T TIGR01299 228 KLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYA 307 (742)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888887766 56788999999999999999999999988888
Q ss_pred HHhhh-----------------hHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCCh
Q 048699 181 YLVGT-----------------VVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADI 243 (312)
Q Consensus 181 ~~~~~-----------------~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
+.++. ..+||+.+++.++++++.++..+++||||+|+ ..+++.+++.+.++++++.+...
T Consensus 308 ~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL---~~~gr~~eA~~iL~~i~~~n~~~ 384 (742)
T TIGR01299 308 AAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF---LENGKHDEAWMILKLIHDTNMRA 384 (742)
T ss_pred HHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHCCCHHHHHHHHHHHhcCCCCC
Confidence 76541 12699999998888888887788899999999 99999999999999997654211
Q ss_pred ---hh-h--hHHHHHhhhhh------ccccc-----------------cchhhhccccchhHHHHHHHHHHHhhhhchhH
Q 048699 244 ---SM-E--SPDIRDYTKTF------KNDSR-----------------AGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAA 294 (312)
Q Consensus 244 ---~~-~--~~~~~~~~~~~------~~~~~-----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (312)
.. . .+.++.....+ +..+. ..++++|++++++++++++++++...+ ++|+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yyg 463 (742)
T TIGR01299 385 KGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYG 463 (742)
T ss_pred cCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHH
Confidence 00 0 01111111000 00000 135678888888888887777765555 7999
Q ss_pred HHhcHHHHHHH
Q 048699 295 IAYYASYIFAA 305 (312)
Q Consensus 295 ~~~~~~~~~~~ 305 (312)
+..|.|.+++.
T Consensus 464 l~~w~P~~~~~ 474 (742)
T TIGR01299 464 LSVWFPDMIKH 474 (742)
T ss_pred HHHHHHHHHHH
Confidence 99999999765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=198.86 Aligned_cols=252 Identities=17% Similarity=0.137 Sum_probs=179.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccc-----cCCcccchhHHHHHHHHHHHHHHHHH
Q 048699 39 DSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITAD-----LGLSVREDLLIEASLLLMTIGAISGS 113 (312)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ig~ 113 (312)
+.+..+.++.+++++.++.+.+|+ +.+..+...+.+..+ .+.+..+.+++. +...++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ig~~ig~ 73 (502)
T TIGR00887 7 TAPFGWQHFRAIVIAGVGFFTDSY----------DLFCISLVTKMLGYVYYHGKGPLPSSVSAAVN---GSASIGTLAGQ 73 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCcccchHHHHHHHH---HHHHHHHHHHH
Confidence 345567788888888899999999 877777776766543 234455667788 99999999999
Q ss_pred HhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------------cceeeeecCCCCchhHHH
Q 048699 114 LINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------------IPIYITEIAPKNVRGAYT 166 (312)
Q Consensus 114 ~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~i~e~~~~~~r~~~~ 166 (312)
+++|+++||+|||+++.++.++..++.++++++.+ .+.++.|++|++.|+++.
T Consensus 74 ~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~ 153 (502)
T TIGR00887 74 LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMM 153 (502)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHH
Confidence 99999999999999999998888888777665421 567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh---------------------------hHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHH
Q 048699 167 ATNQLLVASGLSVTYLVGT---------------------------VVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIR 219 (312)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~---------------------------~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~ 219 (312)
++.+.+..+|.++++.++. ..+||+++.+.++++++.++..+++||||+|+
T Consensus 154 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l-- 231 (502)
T TIGR00887 154 AAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT-- 231 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--
Confidence 9999988888877766541 12699999988888888877788999999999
Q ss_pred HHhcCCH-HHHHHHHHHHhCCCC-ChhhhhHHHHHhhhhhccccccchhhhccccchh---HHHHHHHHHHHhhhhchhH
Q 048699 220 RATIGKE-KELDTTLQRLMGKTA-DISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAY---SLSVGVGLMVMQPLVGSAA 294 (312)
Q Consensus 220 ~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~ 294 (312)
..+++. +++++.+++..+.+. +..++.++.++ +++..+.+++++++++..+ +..+++...++.....+++
T Consensus 232 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 306 (502)
T TIGR00887 232 -ADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST----AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYG 306 (502)
T ss_pred -HHhCcchHHHHHHHHHHhccccccCcccccchhc----cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 887776 456666776654321 11111111111 1111223678887642211 2223223333333345677
Q ss_pred HHhcHHHHHHHcCCCC
Q 048699 295 IAYYASYIFAAAGKFT 310 (312)
Q Consensus 295 ~~~~~~~~~~~~G~~~ 310 (312)
+..|.|.++++.|+++
T Consensus 307 ~~~~~p~i~~~~G~~~ 322 (502)
T TIGR00887 307 VNLNQKVILSAIGYSP 322 (502)
T ss_pred cccccHHHHHHHcCCC
Confidence 8888999999888864
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=180.66 Aligned_cols=246 Identities=24% Similarity=0.354 Sum_probs=178.2
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCcccccccc--------CCcccchhHHHHHHHHHHHHHHHHHH
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADL--------GLSVREDLLIEASLLLMTIGAISGSL 114 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ig~~ 114 (312)
.+....+++++.++.+..|+ +...+++..+.+++++ +.+..+.+++. +.+.++.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~ig~~~~~~ 73 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGY----------DTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV---ASALIGCIIGGA 73 (479)
T ss_pred chHHHHHHHHHHHHHHhcCc----------ccceehHhHHHHHHHhcccccccccCChhHHHHHH---HHHHHHHHHHHH
Confidence 34566667777788899999 8888887777777766 78888899999 999999999999
Q ss_pred hHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc---------c------------------------cceeeeecCCCCc
Q 048699 115 INGKIADLTGQRCAMRLSDLFCILGWLAIAFSK---------Q------------------------IPIYITEIAPKNV 161 (312)
Q Consensus 115 ~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~---------~------------------------~~~~i~e~~~~~~ 161 (312)
++|+++||+|||++++++.++.+++.+++++.. + .+.+++|++|+++
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 999999999999999999988887776655420 0 4568899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHH
Q 048699 162 RGAYTATNQLLVASGLSVTYLVGT------------VVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKEL 229 (312)
Q Consensus 162 r~~~~~~~~~~~~~g~~~~~~~~~------------~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~ 229 (312)
|++++++.+.+..+|.++++.++. ..+||+.|++.+++.++..+..+++||+|+++ ..+++.+++
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l---~~~~~~~~~ 230 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL---MSRGKQEQA 230 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHH---HHcCCHHHH
Confidence 999999999999999888766542 34899999998888777766677899999998 888888887
Q ss_pred HHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHcCCC
Q 048699 230 DTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKF 309 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 309 (312)
++..++..+.. +..+..++.++..+.+.+ ..+..+. .......+.+....+.++.+++.+.+|.|.++++.|++
T Consensus 231 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~ 304 (479)
T PRK10077 231 EGILRKIMGNT-LATQALQEIKHSLDHGRK----TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304 (479)
T ss_pred HHHHHHHcCCh-hHHHHHHHHHHHHHHhhh----hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCC
Confidence 77777665433 222222222221111010 0111111 11122233334445566677888889999999988876
Q ss_pred C
Q 048699 310 T 310 (312)
Q Consensus 310 ~ 310 (312)
.
T Consensus 305 ~ 305 (479)
T PRK10077 305 T 305 (479)
T ss_pred C
Confidence 5
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=176.93 Aligned_cols=252 Identities=26% Similarity=0.370 Sum_probs=182.0
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCc--------ccchhHHHHHHHHHHHHHHHHHH
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLS--------VREDLLIEASLLLMTIGAISGSL 114 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ig~~ 114 (312)
.++.+...+++.++.+..++ +........+.+..+++.+ ..+.+++. +++.++..++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~ 89 (481)
T TIGR00879 23 YWKVALLSLIAAIGGLMFGY----------DTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVV---SIFLVGGFIGAL 89 (481)
T ss_pred cHHHHHHHHHHHHHHHhccc----------ccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHH---HHHHHHHHHHHH
Confidence 35556666666677777888 7777777888777777766 78889999 999999999999
Q ss_pred hHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------------------cceeeeecCCCCchhHHHHHHH
Q 048699 115 INGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------------------IPIYITEIAPKNVRGAYTATNQ 170 (312)
Q Consensus 115 ~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~i~e~~~~~~r~~~~~~~~ 170 (312)
+.|+++||+|||++++++.++..++.+++.+..+ ...++.|++|+++|+++.++.+
T Consensus 90 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 169 (481)
T TIGR00879 90 FAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQ 169 (481)
T ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHH
Confidence 9999999999999999999988888887754332 3467899999999999999999
Q ss_pred HHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCCh
Q 048699 171 LLVASGLSVTYLVG-------TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADI 243 (312)
Q Consensus 171 ~~~~~g~~~~~~~~-------~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
.+..+|.++++.++ ...+||+.|++.++..++.++..+++||+|++. ..+++.++.++..++..+.+...
T Consensus 170 ~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR00879 170 LAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWL---VGKGRVEEARKSLARLRGTSGED 246 (481)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHH---HHcCChHHHHHHHHHHhCCCCCc
Confidence 99999999998887 345899999997777777766777899999888 77777666666555554333211
Q ss_pred hhhhH---HHHHhhhhhccccccchhhhcccc--chhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHcCCCC
Q 048699 244 SMESP---DIRDYTKTFKNDSRAGIFYLFQRN--YAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFT 310 (312)
Q Consensus 244 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 310 (312)
....+ ..+...+.+.+..+..+.++++.. ..++.++...+..+....+.+.+.+|.|.++++.|++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 318 (481)
T TIGR00879 247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST 318 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc
Confidence 11111 111111111111122344444431 34555666666666666677788899999999888875
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-26 Score=207.96 Aligned_cols=209 Identities=33% Similarity=0.494 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc---c---------------------cc
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK---Q---------------------IP 150 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~---~---------------------~~ 150 (312)
.++.. +...+|..+|++++|+++||+|||+++.++.++..++.++.++++ + .+
T Consensus 48 ~~~~~---~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 48 SSLLT---SSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHH---HHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45667 999999999999999999999999999999999999999999998 5 67
Q ss_pred eeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh----h---HHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhc
Q 048699 151 IYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT----V---VSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI 223 (312)
Q Consensus 151 ~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----~---~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~ 223 (312)
.|+.|..|+++|++..++.+.+..+|.+++..++. . ..||+.+.+.++++++..+..+++||||+|+ ..+
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL---~~~ 201 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWL---LSK 201 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee---ccc
Confidence 89999999999999999999999998888776652 2 2499999999999888777778999999999 999
Q ss_pred CCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhcccc-chhHHHHHHHHHHHhhhhchhHHHhcHHHH
Q 048699 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRN-YAYSLSVGVGLMVMQPLVGSAAIAYYASYI 302 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (312)
++.+++++.++++++.+ ..+++.++.+++.++.++ .+.+++++++++ +++++.+.+.+.+++++++.+.+.+|.+.+
T Consensus 202 ~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i 279 (451)
T PF00083_consen 202 GRDEEAEKVLRKLRGKE-IEDEEIEEIKAEKKESQE-SKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI 279 (451)
T ss_pred ccccccccccccccccc-cccccccccccccccccc-cceeeeecccccccccccccccccccccccccccccccccccc
Confidence 99999999999976653 333333333333332222 226788888874 577888888888889899999999999999
Q ss_pred HHHcCCCCC
Q 048699 303 FAAAGKFTT 311 (312)
Q Consensus 303 ~~~~G~~~~ 311 (312)
+++.|.+..
T Consensus 280 ~~~~~~~~~ 288 (451)
T PF00083_consen 280 FENAGISNS 288 (451)
T ss_pred ccccccccc
Confidence 998887754
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=176.30 Aligned_cols=216 Identities=19% Similarity=0.230 Sum_probs=162.3
Q ss_pred CCccccccccCCc---ccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------
Q 048699 79 PAESGITADLGLS---VREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------- 148 (312)
...+.+.+++|++ ..+.++.. +++.++.++++++.|+++||+|||++++++.++.+++.++.+++++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~---s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQ---SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEEEecceechHHHHHHHH---HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4567899999999 56667777 9999999999999999999999999999999999999988888777
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHhhcccCC
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-SCLVLALIAAVPCLLQVVGLFFIPEI 213 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~pes 213 (312)
...++.|++|+++|+.+.++...+..+|.++++.++... +||+.+++.+++.++..+..+++||+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 446789999999999999999999999999988887443 69999999988888777777889999
Q ss_pred hHhHHHHHhcCCHHHHHHHHHHHhCCCCC-hhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhch
Q 048699 214 AQSIIRRATIGKEKELDTTLQRLMGKTAD-ISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGS 292 (312)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (312)
|+|+ ..+++.+++.+.+++..+.+.. ..++......+.+.+++.++.+++++++++..+...+.+.+.++.....+
T Consensus 267 p~~l---~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 267 PRWL---ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred hHHH---HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999998888887643321 11111111111111112224578889988766666665555554444344
Q ss_pred hHHHhcHH
Q 048699 293 AAIAYYAS 300 (312)
Q Consensus 293 ~~~~~~~~ 300 (312)
+.+..+.+
T Consensus 344 ~~~~~~~~ 351 (505)
T TIGR00898 344 YGLVLDLG 351 (505)
T ss_pred HHHhcccc
Confidence 44444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=164.64 Aligned_cols=157 Identities=14% Similarity=0.089 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh
Q 048699 46 VVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ 125 (312)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr 125 (312)
++...++++++++..++ +....+...|.+.+++|++.++.+++. +.+.++..+++++.|+++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~----------d~~~~~~~~~~l~~~~~~s~~~~g~~~---s~~~~~~~~~~~~~g~l~dr~G~ 72 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFL----------DRINIGFAGLTMGKDLGLSATMFGLAA---TLFYAAYVICGIPSNIMLAIIGA 72 (412)
T ss_pred hhHHHHHHHHHHHHHHh----------hhhhHHHHHHhhHhhcCCCHHHHHHHH---HHHHHHHHHHHhhHHHHHHHhCh
Confidence 34455666667777888 888888888999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 126 RCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 126 k~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
|+++..+.++..++.++++++++ ...++.|++|+++|++++++++.+..+|..+++.++
T Consensus 73 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 73 RRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877 235679999999999999999999989888887775
Q ss_pred h----------hHHHHHHHHHHHHHHHHHH-HHhhcccCChH
Q 048699 185 T----------VVSCLVLALIAAVPCLLQV-VGLFFIPEIAQ 215 (312)
Q Consensus 185 ~----------~~~w~~~~~~~~~~~~~~~-~~~~~~pes~~ 215 (312)
. ..+||+.|++.++++++.. +..+++||+|+
T Consensus 153 ~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 153 GYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3 2489999999887766543 44567788873
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=161.57 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccC---CcccchhHHHHHHHHHHHHHHHHHHhHHhhh
Q 048699 44 PAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLG---LSVREDLLIEASLLLMTIGAISGSLINGKIA 120 (312)
Q Consensus 44 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~ 120 (312)
++++..+....++.+..++ +...++...|.+.++++ .+..+.+......+..+++..+|++++|+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~----------d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~ 87 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWF----------DFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIA 87 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677888888 88888888889998885 4444444444233566677779999999999
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcc-----------------------------cceeeeecCCCCchhHHHHHHHH
Q 048699 121 DLTGQRCAMRLSDLFCILGWLAIAFSKQ-----------------------------IPIYITEIAPKNVRGAYTATNQL 171 (312)
Q Consensus 121 dr~Grk~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~i~e~~~~~~r~~~~~~~~~ 171 (312)
||+|||+++.++.++++++.++++++++ ...++.|++|+++|++..++.+.
T Consensus 88 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~ 167 (432)
T PRK10406 88 DKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYV 167 (432)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHH
Confidence 9999999999999999988888766542 34688999999999999998887
Q ss_pred HHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHhhcccCChH
Q 048699 172 LVASGLSVTYLVG------------TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQ 215 (312)
Q Consensus 172 ~~~~g~~~~~~~~------------~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~ 215 (312)
+...|.++++.+. ..++||+.|++.++++++..+....+||+|+
T Consensus 168 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~ 223 (432)
T PRK10406 168 TLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ 223 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 7777776665432 1468999999988877766555555666653
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=164.54 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccch-hHHH-H-HHHHHHHHHHHHHHhHHhhhhhcCh
Q 048699 49 SSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVRED-LLIE-A-SLLLMTIGAISGSLINGKIADLTGQ 125 (312)
Q Consensus 49 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~ig~~~~g~l~dr~Gr 125 (312)
..+...++.+..+| +..+++...|.+.++++.+.+.. +++. + ..++.+++..+|++++|+++||+||
T Consensus 17 ~~~~~~~g~~~~~~----------d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Gr 86 (490)
T PRK10642 17 AITAASLGNAMEWF----------DFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGR 86 (490)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45566778888999 88888888898988887554332 2221 1 1377889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc-----------------------------cceeeeecCCCCchhHHHHHHHHHHHHH
Q 048699 126 RCAMRLSDLFCILGWLAIAFSKQ-----------------------------IPIYITEIAPKNVRGAYTATNQLLVASG 176 (312)
Q Consensus 126 k~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g 176 (312)
|+++.++.++++++.++++++++ ...++.|++|+++||+..++...+..+|
T Consensus 87 r~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G 166 (490)
T PRK10642 87 QKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAG 166 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999998887654 4567899999999999999988777777
Q ss_pred HHHHHHhh----h--------hHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChh
Q 048699 177 LSVTYLVG----T--------VVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADIS 244 (312)
Q Consensus 177 ~~~~~~~~----~--------~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
..+++.+. . .++||+.|++.+++++++++....+||+|+|. ..+++.++.. .
T Consensus 167 ~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~---~~~~~~~~~~---------~---- 230 (490)
T PRK10642 167 FVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ---QHVDKLEQGD---------R---- 230 (490)
T ss_pred HHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH---HHHHhhhhhc---------c----
Confidence 76665432 1 45899999998777666666667789999876 3221111100 0
Q ss_pred hhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHH-cCCCC
Q 048699 245 MESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAA-AGKFT 310 (312)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~ 310 (312)
+ . ..++++.++++++++ +++.+.+.+...+ .....++.+..|.|.++++ .|++.
T Consensus 231 -~------~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~s~ 285 (490)
T PRK10642 231 -E------G---LQDGPKVSFKEIATK-HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHYSE 285 (490)
T ss_pred -c------c---ccccccCCHHHHHHH-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 0 0 001123356667664 3334443333333 2334577888899999965 48764
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=150.79 Aligned_cols=246 Identities=16% Similarity=0.128 Sum_probs=184.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh
Q 048699 42 ATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD 121 (312)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 121 (312)
..+..+...+..++++..... .....+...|.+...+|.+..+.+++. ...+.|..+|+..+|.++|
T Consensus 72 fgrfq~yl~~~ag~gwmad~m----------~~m~~s~i~~~l~~~w~~s~~q~~llt---~~v~~gmllga~~w~l~~d 138 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAM----------EMMLLSLILPALDEVWGPSEGQAPLLT---LSVFLGMLVGAMVWGLSAD 138 (528)
T ss_pred cccchhhHHHHhhhHHHHHHH----------HHHHHHHHHHHHHhhhchhhhhhhHHH---HHHHhhhhhhhhhhheehh
Confidence 345556666666677666655 444555667788888999999999999 9999999999999999999
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcc--------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHH
Q 048699 122 LTGQRCAMRLSDLFCILGWLAIAFSKQ--------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTY 181 (312)
Q Consensus 122 r~Grk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~ 181 (312)
++|||+.+.+.....++..++.+.+++ ..++-.|..|..+|...+-+. ..+.+|.+...
T Consensus 139 ~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea 217 (528)
T KOG0253|consen 139 TIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEA 217 (528)
T ss_pred hhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHH
Confidence 999999999999999888888888887 122336788888888777666 77788887766
Q ss_pred Hhh----hhHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCC----h----------
Q 048699 182 LVG----TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTAD----I---------- 243 (312)
Q Consensus 182 ~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------- 243 (312)
.++ .++||||.......+..+.....+++|||||++ +.+++++++.+.++|+.+.+.. .
T Consensus 218 ~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~---~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~ 294 (528)
T KOG0253|consen 218 LLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY---LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQ 294 (528)
T ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh---hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhh
Confidence 554 667999999888888777888889999999999 9999999999999999764421 0
Q ss_pred hhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHH
Q 048699 244 SMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAA 305 (312)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (312)
++|..+..+.+....++.+.+..+++..+.++..+..+..++...++ +|+.....+.+++.
T Consensus 295 e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqs 355 (528)
T KOG0253|consen 295 EQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQS 355 (528)
T ss_pred hhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhc
Confidence 11111111222222233455778899988888888877777766664 77777766666653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=157.25 Aligned_cols=162 Identities=23% Similarity=0.160 Sum_probs=135.5
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL 122 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr 122 (312)
+++++.....+.++.+..++ +....+...|.+.+++|++..+.+++. +.+.++..+++++.|+++||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~s~~~~g~~~---~~~~~~~~~~~~~~G~l~Dr 73 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAF----------DFFLVALVLAEVAGEFGLTTVDAASLI---SAALISRWFGALMFGLWGDR 73 (405)
T ss_pred CcccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCChhhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888888 777788888999999999999999999 99999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHH
Q 048699 123 TGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTY 181 (312)
Q Consensus 123 ~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~ 181 (312)
+|||++++++.++.+++.+++++.++ ...++.|++|+++|+++.++.+.+..+|..+++
T Consensus 74 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 153 (405)
T TIGR00891 74 YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAA 153 (405)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888877766 345678999999999999999999889888887
Q ss_pred Hhhh----hHH--HHHHHHHHHHHHHHHHHHhhcccCChHhH
Q 048699 182 LVGT----VVS--CLVLALIAAVPCLLQVVGLFFIPEIAQSI 217 (312)
Q Consensus 182 ~~~~----~~~--w~~~~~~~~~~~~~~~~~~~~~pes~~~~ 217 (312)
.+.. ..+ ||+.|++.+++.++.++....+||++++.
T Consensus 154 ~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 195 (405)
T TIGR00891 154 QVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWK 195 (405)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 7753 334 99999887776666666666778887654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=162.59 Aligned_cols=204 Identities=17% Similarity=0.115 Sum_probs=145.9
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------------------
Q 048699 88 LGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------------- 148 (312)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------------- 148 (312)
+..+.....+.. +++++|.++|++++|+++||+|||++++++.++..++.++.+++++
T Consensus 113 ~c~~~~~~~~~~---s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 113 VCDSSTLVALGQ---SLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred eeCcHhHHHHHH---HHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 344444555566 9999999999999999999999999999999999999999999998
Q ss_pred --cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh-hhH-HHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcC
Q 048699 149 --IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG-TVV-SCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIG 224 (312)
Q Consensus 149 --~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~-~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~ 224 (312)
...++.|+.+++.|+.+.++ ......++.+++..+ ... +||+.+++..++.++.++..++.||+|||+ ..++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl---~~~g 265 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWL---LSKG 265 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHH---HHcC
Confidence 56788999999999999999 544444444444444 333 799999999999888877777777999999 9999
Q ss_pred CHHHHHHHHHHHhCCC---CChhhhhHHH--HHhhhhhccccccchhhhcccc-chhHHHHHHHHHHHhhhhchhHHHhc
Q 048699 225 KEKELDTTLQRLMGKT---ADISMESPDI--RDYTKTFKNDSRAGIFYLFQRN-YAYSLSVGVGLMVMQPLVGSAAIAYY 298 (312)
Q Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (312)
+.+++.+.+++..+.+ .+..+..... ....+....+++..+.++++.+ .++..+. ..+.++....+++++.+.
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~~~~~~~~y~gl~~~ 344 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLY-LLFIWFVFSLVYYGLSLN 344 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHH-HHHHHHHHhHHHHhhhhh
Confidence 9999999999986543 1221111111 1111111122346788899987 4444444 444443333345555544
Q ss_pred H
Q 048699 299 A 299 (312)
Q Consensus 299 ~ 299 (312)
.
T Consensus 345 ~ 345 (521)
T KOG0255|consen 345 V 345 (521)
T ss_pred h
Confidence 3
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=156.40 Aligned_cols=244 Identities=18% Similarity=0.163 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh
Q 048699 46 VVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ 125 (312)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr 125 (312)
.+...+...+..+..++ ......+..|.+.+++|.+..+.+++. +...++.+++.++.|+++||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~g~ 81 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGY----------DLAAMGFAAPAISAEWGLDPVQLGFLF---SAGLIGMAFGALFFGPLADRIGR 81 (398)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHhhccCCCHHHHHHHH---HHHHHHHHHHHHHhHHHHHHhhh
Confidence 33344444445556666 555567778889999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 126 RCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 126 k~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
|+.+..+.++..++.++..+.++ ...++.|++|++.|+++.++...+..+|..+++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 82 KRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 99999999888888888777665 345778999999999999999988888888887766
Q ss_pred ----hhHHHHHHHHHHHHHHHH-HHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhcc
Q 048699 185 ----TVVSCLVLALIAAVPCLL-QVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKN 259 (312)
Q Consensus 185 ----~~~~w~~~~~~~~~~~~~-~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (312)
...+|++.+++.+++.++ ..+..+++||++++. ..+ +.++..+..++......+..++ +..+ .+.+++
T Consensus 162 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~ 234 (398)
T TIGR00895 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL---VSK-RPETVRRIVNAIAPQMQAEAQS--ALPE-QKATQG 234 (398)
T ss_pred HHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHH---Hhc-CHHHHHHHHHHHHHhccccccc--cccc-cccccc
Confidence 445899999887655444 444556788888766 444 3333333333332111000000 0000 000001
Q ss_pred ccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHcCCCC
Q 048699 260 DSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFT 310 (312)
Q Consensus 260 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 310 (312)
..+..++.+++++..+......... +....+.+.+..|.|.+.++.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ 284 (398)
T TIGR00895 235 TKRSVFKALFQGKTARITVLLWLLY-FMLLVGVYFLTNWLPKLMVELGFSL 284 (398)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 1111223344443333333333333 3334456677888888888778765
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=149.85 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh
Q 048699 46 VVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ 125 (312)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr 125 (312)
.+...+...++.|..|. .-.+....+|.+.++++.+....|+.. +.+.++..+++++...+.||+.|
T Consensus 11 ~~~~l~aLa~~~F~igt----------tEfv~~gLLp~iA~dl~vs~~~aG~li---s~yAl~~ai~ap~l~~lt~r~~R 77 (394)
T COG2814 11 MWLALLALALAAFAIGT----------TEFVPVGLLPPIAADLGVSEGAAGQLI---TAYALGVALGAPLLALLTGRLER 77 (394)
T ss_pred chHHHHHHHHHHHHHHh----------HHHHHHhchHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHcccch
Confidence 33444555566666676 556667889999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHH----H
Q 048699 126 RCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSV----T 180 (312)
Q Consensus 126 k~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~----~ 180 (312)
|++++....++.++.++++++++ ...+..++.|+++|++++++...+..++.++ |
T Consensus 78 r~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 78 RRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999 4567789999999999999998877666555 5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHh-hccc
Q 048699 181 YLVGTVVSCLVLALIAAVPCLLQVVGL-FFIP 211 (312)
Q Consensus 181 ~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~p 211 (312)
.++++.+|||..|++.++++++.++.. ..+|
T Consensus 158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566688899999999999888876654 5667
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=157.65 Aligned_cols=226 Identities=17% Similarity=0.037 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC
Q 048699 45 AVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124 (312)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G 124 (312)
.++...+.+.++.+..++ +.....+..|.+.+++|++..+.+++. +.+.++..+++++.|+++||+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~~~s~~~~~~~~---~~~~~~~~l~~~~~g~l~dr~g 81 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGF----------DFMLIFYIMYLIKADLGLTDMEGAFLA---TAAFIGRPFGGALFGLLADKFG 81 (426)
T ss_pred HHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 334445566677777788 777778888999999999999999999 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 048699 125 QRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLV 183 (312)
Q Consensus 125 rk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 183 (312)
||+++.++.++.+++.++++++++ ...++.|++|+++|+++.++...+..+|.++++.+
T Consensus 82 ~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l 161 (426)
T PRK12307 82 RKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF 161 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH
Confidence 999999999999999888887766 34577899999999999999999988988888766
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhcc
Q 048699 184 G----TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKN 259 (312)
Q Consensus 184 ~----~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (312)
. ...+||+.|++..+..++.+......||++++. ..+.+ ..+++. + ....
T Consensus 162 ~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~---~~~~~------------~~~~~~--~---------~~~~ 215 (426)
T PRK12307 162 MPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWE---EAKLS------------GKGKHS--Q---------SAWS 215 (426)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHH---Hhhhh------------cccccc--c---------cchh
Confidence 5 446899999886554444333333346655433 11100 000000 0 0000
Q ss_pred ccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHcCCCC
Q 048699 260 DSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAAGKFT 310 (312)
Q Consensus 260 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 310 (312)
..+..++++++++..+...+.....+ ..+...+.+..+.|.++++.|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ 265 (426)
T PRK12307 216 VFSLSMKGLFNRAQFPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDT 265 (426)
T ss_pred hhhHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 01224567777765554444333222 223334456677888888888764
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=154.56 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 048699 44 PAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT 123 (312)
Q Consensus 44 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 123 (312)
++++.+.+++.+..+.+++ +....+...|.+.+++|.+.++.+++. +...++..+++++.|+++||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~ 77 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGL----------DLQSAGVAAPRMAQEFGLDVAQMGWAF---SAGILGLLPGALLGGRLADRI 77 (406)
T ss_pred hHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777778888888 777778888999999999999999999 999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHH
Q 048699 124 GQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYL 182 (312)
Q Consensus 124 Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~ 182 (312)
|||+++..+.++..++.+++.+.++ ...++.|++|+++|++++++.+.+..+|..+++.
T Consensus 78 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 157 (406)
T PRK11551 78 GRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASV 157 (406)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888887777766 3457789999999999999999999999888877
Q ss_pred hh----hhHHHHHHHHHHHHHHHHHHH-HhhcccCChHhH
Q 048699 183 VG----TVVSCLVLALIAAVPCLLQVV-GLFFIPEIAQSI 217 (312)
Q Consensus 183 ~~----~~~~w~~~~~~~~~~~~~~~~-~~~~~pes~~~~ 217 (312)
++ ...+|++.|++.+++.++..+ ..+++||+|++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (406)
T PRK11551 158 IGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFA 197 (406)
T ss_pred HHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 76 345899999887766555443 445678877544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-19 Score=154.76 Aligned_cols=231 Identities=15% Similarity=0.104 Sum_probs=168.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh
Q 048699 42 ATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD 121 (312)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 121 (312)
..+.++.+.+.+.+++..+.+ ..-.++.+.|.+.++.++|.+|.|.+. +.+++.+.++-++.|.++|
T Consensus 23 y~~~r~qif~~~fiGYa~fYl----------~RknF~~a~p~l~e~~~lsk~~lG~i~---s~f~i~YG~sKf~~G~~sD 89 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYL----------TRKNFNLAMPALIEDGGLSKTQLGILG---SAFSITYGVSKFVMGVLSD 89 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHhHhhccHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHhhhhcc
Confidence 344556667777788888888 888889999999999999999999999 9999999999999999999
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHH
Q 048699 122 LTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVT 180 (312)
Q Consensus 122 r~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~ 180 (312)
|.+.|+.+.+++++.++..++++++++ ....+..|+|+++||+..++++.+-++|+.+.
T Consensus 90 r~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~ 169 (448)
T COG2271 90 RSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA 169 (448)
T ss_pred cCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH
Confidence 999999999999999999999988877 44678999999999999999999999998877
Q ss_pred HHhh------hhHHHHHHHHHHHHHHHHHH-HHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHh
Q 048699 181 YLVG------TVVSCLVLALIAAVPCLLQV-VGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDY 253 (312)
Q Consensus 181 ~~~~------~~~~w~~~~~~~~~~~~~~~-~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (312)
+.+. .+.+||..|++.++++++.. +.++.++++|+.. .-...++ .+++. .+..
T Consensus 170 ~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~----GLP~ie~-------~~~d~-------~e~~-- 229 (448)
T COG2271 170 PLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE----GLPPIEE-------YRGDP-------LEIY-- 229 (448)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc----CCCCHHH-------hhcCc-------hhhh--
Confidence 6665 23389999999988876654 4556667777422 1111121 11111 0000
Q ss_pred hhhhccc-----cccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHc-CCCC
Q 048699 254 TKTFKND-----SRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAA-GKFT 310 (312)
Q Consensus 254 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~ 310 (312)
+++++. ++.-++.+++||+.|.+.+..++ .+..-+++..|.|.++.+. |++.
T Consensus 230 -~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vf----vYivR~gi~dW~p~YL~e~k~~s~ 287 (448)
T COG2271 230 -EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVF----VYVVRYGINDWGPLYLSEVKGFSL 287 (448)
T ss_pred -hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHhcCCCH
Confidence 111111 11223345566555544443333 3445788999999999886 7764
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=157.38 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=117.4
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
+....+...|.+.+++|++..+.+++. +.+.++.++++++.|+++||+|||+++.++.++.+++.++++++++
T Consensus 38 ~~~~~~~~~~~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (434)
T PRK11663 38 TRKSFNAAMPEMLADLGLSRSDIGLLA---TLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAF 114 (434)
T ss_pred hhhhHHHhhHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455557778889999999999999999 9999999999999999999999999999999999998888877766
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH-HHH
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQ-VVG 206 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~-~~~ 206 (312)
...++.|++|+++|++++++.+.+..+|..+++.+. ..++||+.|++.++++++. ++.
T Consensus 115 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 115 ALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 234678999999999999999998888888887665 4568999999887765544 334
Q ss_pred hhcccCChHh
Q 048699 207 LFFIPEIAQS 216 (312)
Q Consensus 207 ~~~~pes~~~ 216 (312)
.++++|+|++
T Consensus 195 ~~~~~~~p~~ 204 (434)
T PRK11663 195 CWRLRDKPQA 204 (434)
T ss_pred HHHcCCCHhh
Confidence 4567777643
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=152.21 Aligned_cols=192 Identities=14% Similarity=-0.002 Sum_probs=135.9
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
.++..|.+.+++|++.++.+++. +.+.+++++++++.|+++||+|||+++..+.+....+.+.....++
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~~~---s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 86 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGLLA---ITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ 86 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 36778899999999999999999 9999999999999999999999998766554444443322222133
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHH-HHhhccc
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQV-VGLFFIP 211 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~-~~~~~~p 211 (312)
....++|++|+++|++++++.+.+..+|.++++.++ ..++||+.|++.++++++.. +..+++|
T Consensus 87 ~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 87 LLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 224458999999999999999999988888887666 44599999999777765544 3456788
Q ss_pred CChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhc
Q 048699 212 EIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVG 291 (312)
Q Consensus 212 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (312)
|+|++. .+. . +.+ +. ...++++++++..+... +..++....
T Consensus 167 ~~p~~~---~~~------------------~---~~~---~~--------~~~~~~ll~~~~~~~~~----~~~~~~~~~ 207 (368)
T TIGR00903 167 ALPFQA---AEG------------------F---GFK---DA--------VKEFGALAGRKDLWIIG----AILGFGVAL 207 (368)
T ss_pred CCCCCC---CCC------------------c---chH---HH--------HHHHHHHHcChhHHHHH----HHHHHHHHH
Confidence 887543 100 0 000 00 01256777765543333 334444556
Q ss_pred hhHHHhcHHHHHHHcCCCC
Q 048699 292 SAAIAYYASYIFAAAGKFT 310 (312)
Q Consensus 292 ~~~~~~~~~~~~~~~G~~~ 310 (312)
++.+..|.|.++++.|++.
T Consensus 208 ~~~~~~wlp~~L~~~g~s~ 226 (368)
T TIGR00903 208 FDNLAIWLEAALRPAGLED 226 (368)
T ss_pred HHHHHHHHHHHHHHCCCCh
Confidence 7788999999999888764
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-17 Score=147.39 Aligned_cols=141 Identities=19% Similarity=0.169 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHH---HHHHHHHHHHHHHhHHhhhhhcCh
Q 048699 49 SSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEAS---LLLMTIGAISGSLINGKIADLTGQ 125 (312)
Q Consensus 49 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ig~~~~g~l~dr~Gr 125 (312)
......++.+...+ +...++...|.+.++++.+..+.+..... .....++..+|+++.|+++||+||
T Consensus 16 ~~~~~~~~~~~~~~----------d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Gr 85 (434)
T PRK15075 16 AILRVTSGNFLEMF----------DFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGR 85 (434)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhch
Confidence 56667778899999 99999999999999999988776543211 122233445789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc-----------------------------cceeeeecCCCCchhHHHHHHHHHHHHH
Q 048699 126 RCAMRLSDLFCILGWLAIAFSKQ-----------------------------IPIYITEIAPKNVRGAYTATNQLLVASG 176 (312)
Q Consensus 126 k~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g 176 (312)
|+.++.+.++..++.++++++++ ...++.|++|+++|++.+++...+..+|
T Consensus 86 r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g 165 (434)
T PRK15075 86 RKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVA 165 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHH
Confidence 99999999999888888876643 3357899999999999999887766555
Q ss_pred HHHHHHhh------------hhHHHHHHHHHHHHH
Q 048699 177 LSVTYLVG------------TVVSCLVLALIAAVP 199 (312)
Q Consensus 177 ~~~~~~~~------------~~~~w~~~~~~~~~~ 199 (312)
..+++.++ ..++||+.|++..+.
T Consensus 166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence 55444332 246899999876544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=146.69 Aligned_cols=135 Identities=12% Similarity=0.015 Sum_probs=114.0
Q ss_pred eeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------
Q 048699 76 YSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------- 148 (312)
...+..|.+.+++|.+.++.++.. +.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLML---TIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLIS 103 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345567889999999999999999 9999999999999999999999999999999999999998888877
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hc
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FF 209 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~ 209 (312)
...++.|++|+++|++++++...+..+|..+++.++ ...+||+.|++.++++++..+.. ..
T Consensus 104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~ 183 (390)
T PRK03545 104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 235778999999999999999998888888887765 55699999999888766654433 33
Q ss_pred ccCC
Q 048699 210 IPEI 213 (312)
Q Consensus 210 ~pes 213 (312)
+||.
T Consensus 184 ~~~~ 187 (390)
T PRK03545 184 LPLL 187 (390)
T ss_pred CCCC
Confidence 4543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=148.63 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=105.4
Q ss_pred eeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------
Q 048699 76 YSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------- 148 (312)
...+..|.+.+++|++..+.+++. +.+.++..+++++.|+++||+|||+++..+.++++++.++++++++
T Consensus 54 ~~~~~~~~l~~~~gls~~~~g~~~---~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 130 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTKSDIGNAG---IASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAV 130 (476)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 345677889999999999999988 9999999999999999999999999999999988888888877766
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHH----HHhhh---------hHHHHHHHHHHHHHHHH
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVT----YLVGT---------VVSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~----~~~~~---------~~~w~~~~~~~~~~~~~ 202 (312)
...++.|++|+++|++++++.+....+|..++ +.+.. ..+||+.|++.++++++
T Consensus 131 r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~ 210 (476)
T PLN00028 131 RFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHII 210 (476)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 22357899999999999998876555555444 33321 24899999998888766
Q ss_pred HHHHhhccc
Q 048699 203 QVVGLFFIP 211 (312)
Q Consensus 203 ~~~~~~~~p 211 (312)
..+..++++
T Consensus 211 ~~l~~~~~~ 219 (476)
T PLN00028 211 MGILVLTLG 219 (476)
T ss_pred HHHHHHHHc
Confidence 655544443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=151.47 Aligned_cols=195 Identities=10% Similarity=-0.026 Sum_probs=134.4
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh--cc----------------
Q 048699 87 DLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS--KQ---------------- 148 (312)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~--~~---------------- 148 (312)
+++++..+.|++. +.+.+++.++++++|+++||+|||+++.++.++.+++.+++.++ .+
T Consensus 70 ~~~~s~~~~g~~~---s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~ 146 (465)
T TIGR00894 70 NFKWSGALQGLIL---SSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQG 146 (465)
T ss_pred CCCCCHHHhhHHH---HHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcc
Confidence 7889999999999 99999999999999999999999999999998888877765433 22
Q ss_pred -----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hh-HHHHHHHHHHHHHHHHHHHHhh-cccCChHhH
Q 048699 149 -----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TV-VSCLVLALIAAVPCLLQVVGLF-FIPEIAQSI 217 (312)
Q Consensus 149 -----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~-~~w~~~~~~~~~~~~~~~~~~~-~~pes~~~~ 217 (312)
...++.|++|+++|++++++...+..+|.++++.+. .. .+||+.|++.+++.++..+.++ +.+|+|+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 147 SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 346789999999999999999998888888887765 34 3899999998888766655444 445665321
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhh--hccccccchhhhccccchhHHHHHHHHHHHhhhhchhHH
Q 048699 218 IRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKT--FKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAI 295 (312)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (312)
.+.++++. +. +++..++ ++.+++..++++++++..+.. .+..+....+.+.+
T Consensus 227 ----~~~~~~~~-~~-----------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 280 (465)
T TIGR00894 227 ----PCISKFEK-KY-----------------INSSLQGQKGSTRQSLPIKAIPKSLPVWAI----WFAIFGHFWLYTIL 280 (465)
T ss_pred ----CCCCHHHH-HH-----------------HHhhcccccCCCCCCCCHHHHhcCHHHHHH----HHHHHHHHHHHHHH
Confidence 11111111 10 1000000 011123357777776433332 33333444467788
Q ss_pred HhcHHHHHHHc-CCCC
Q 048699 296 AYYASYIFAAA-GKFT 310 (312)
Q Consensus 296 ~~~~~~~~~~~-G~~~ 310 (312)
..|.|.++++. |++.
T Consensus 281 ~~~lp~~l~~~~g~s~ 296 (465)
T TIGR00894 281 PTYLPTFISWVLRVSG 296 (465)
T ss_pred HHHHHHHHHHHhCcCh
Confidence 88999998764 7764
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-18 Score=147.86 Aligned_cols=248 Identities=18% Similarity=0.108 Sum_probs=166.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCcccccccc-C-------CcccchhHHHHHHHHHHHHHHH
Q 048699 40 SVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADL-G-------LSVREDLLIEASLLLMTIGAIS 111 (312)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~i 111 (312)
...+|+....+.+++++.|+++| +...++...+.+...| + .+....+.+. .+.++|.++
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsY----------DlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn---~~A~vGti~ 99 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSY----------DLFSISLVTKILGYLYYHGDESGGHYPSGVLALVN---AAALVGTIF 99 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccch----------hhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHH---HHHHHHHHH
Confidence 34578999999999999999999 8888877777554433 1 2333445666 999999999
Q ss_pred HHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------------------------cceeeeecCCCCchh
Q 048699 112 GSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------------------------IPIYITEIAPKNVRG 163 (312)
Q Consensus 112 g~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~i~e~~~~~~r~ 163 (312)
|++++|++.||+|||+++...+++++++++++++... ..+..+|.+..+.||
T Consensus 100 GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 100 GQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG 179 (538)
T ss_pred HHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence 9999999999999999999999999999997776544 446779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hh---------------HHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhc-
Q 048699 164 AYTATNQLLVASGLSVTYLVG----TV---------------VSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI- 223 (312)
Q Consensus 164 ~~~~~~~~~~~~g~~~~~~~~----~~---------------~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~- 223 (312)
...+..-...++|.+.|..++ .. .-||..+.+.++++++.+...+.+|||+++. ...
T Consensus 180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~---al~~ 256 (538)
T KOG0252|consen 180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT---ALVS 256 (538)
T ss_pred ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH---HHhh
Confidence 988866444444444443332 11 1499999999999999988889999999887 332
Q ss_pred CCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhcccccc---chhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHH
Q 048699 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRA---GIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYAS 300 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (312)
++.+++.+..+|-. +.+.++.++. +.+.+..+. .+...+..++.+.++. ....|+..-..+|..+.+..
T Consensus 257 ~~~~~a~~d~~k~~------~~~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg~~Llg-t~~~WFllDiafy~~nL~~s 328 (538)
T KOG0252|consen 257 KKLKQAAGDMKKVL------SVDIEAESTA-ESDVPPPSNSFGLFSRLFLRWHGKHLLG-TAGTWFLLDIAFYGQNLFQS 328 (538)
T ss_pred cCHhhhhhcccccc------ccccchhhcc-ccCCCCcccccchHHHHHHHHHHHHHHH-HHHHHHhhhhhhhccccHHH
Confidence 33333332111111 0111111111 111111111 2333333334444444 45555555557999999999
Q ss_pred HHHHHcCCCCC
Q 048699 301 YIFAAAGKFTT 311 (312)
Q Consensus 301 ~~~~~~G~~~~ 311 (312)
.+++..|..+.
T Consensus 329 ~I~~~ig~~~~ 339 (538)
T KOG0252|consen 329 VIFSAIGVIPS 339 (538)
T ss_pred HHHHhhccCCC
Confidence 99999887654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=144.61 Aligned_cols=124 Identities=17% Similarity=0.128 Sum_probs=106.5
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
..+|.+.+++|.++++.++.. +.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSV---TVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 456778899999999999999 9999999999999999999999999999999999999888888766
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~ 205 (312)
...++.|++|+++|+++.++...+..+|.++++.++ ..++||+.|++.++++++..+
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 445778999999999999999888888877777666 456999999988776655443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=146.02 Aligned_cols=139 Identities=22% Similarity=0.199 Sum_probs=117.2
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
......+.+|.+.++++.+..+.++.. +++.++.++++++.|+++||+|||++++.+.++.+++.++++++++
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 107 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASV---SLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQF 107 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 556678888899999999999999999 9999999999999999999999999999999999999998888877
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH-
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG- 206 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~- 206 (312)
...++.|.+|+++|++++++......+|..+++.++ ...+||+.|++.+++.++..+.
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 235667899999999999988888777777777665 4568999999988877766554
Q ss_pred hhcccCCh
Q 048699 207 LFFIPEIA 214 (312)
Q Consensus 207 ~~~~pes~ 214 (312)
.+.+||++
T Consensus 188 ~~~lp~~~ 195 (413)
T PRK15403 188 LLAMPETV 195 (413)
T ss_pred HHhCCCCc
Confidence 34567754
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=145.83 Aligned_cols=159 Identities=15% Similarity=0.072 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHhhccCccccccceeeeeCCCcc-cccccc--CCcccchhHHH--HHHHHHHHHHHHHHHhHHhhhhh
Q 048699 48 FSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAES-GITADL--GLSVREDLLIE--ASLLLMTIGAISGSLINGKIADL 122 (312)
Q Consensus 48 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~ig~~~~g~l~dr 122 (312)
.......++.+.+++ +....+...+ .+.+++ +.++. .+++. ...++.+++..+|+++.|+++||
T Consensus 22 ~~~~~~~~~~~~~~~----------d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr 90 (438)
T PRK09952 22 RAALGSFAGAVVDWY----------DFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR 90 (438)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 345556667788888 7776666555 344444 55555 34432 11134567788999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcc-----------------------------cceeeeecCCCCchhHHHHHHHHHH
Q 048699 123 TGQRCAMRLSDLFCILGWLAIAFSKQ-----------------------------IPIYITEIAPKNVRGAYTATNQLLV 173 (312)
Q Consensus 123 ~Grk~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~i~e~~~~~~r~~~~~~~~~~~ 173 (312)
+|||+++.++.++++++.++++++++ ...++.|+.|+++|++..+..+.+.
T Consensus 91 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~ 170 (438)
T PRK09952 91 LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY 170 (438)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 99999999999999998887776644 3357899999999999999999988
Q ss_pred HHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHhhcccCChHhH
Q 048699 174 ASGLSVTYLVG------------TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSI 217 (312)
Q Consensus 174 ~~g~~~~~~~~------------~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~ 217 (312)
.+|.+++..+. ..++||+.|++.+++.++........||+|+|.
T Consensus 171 ~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~ 226 (438)
T PRK09952 171 GVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE 226 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 88888775443 136899999998877666555555678887665
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=152.98 Aligned_cols=158 Identities=18% Similarity=0.118 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC
Q 048699 45 AVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124 (312)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G 124 (312)
..+.+..+..++++.... +...++...|.+.+++|++..+.+++. +.+.+++.+++++.|+++||+|
T Consensus 26 ~~~~i~~~~~~~~~~~y~----------~r~~~~~~~~~i~~~~~~s~~~~g~~~---s~~~~~~~~~~~~~G~l~Dr~g 92 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYL----------IRKNFKAAQNDMISTYGLSTTELGMIG---LGFSITYGVGKTLVGYYADGKN 92 (467)
T ss_pred HHHHHHHHHHHHHHHHHH----------HhcChhhhhHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHhhhhhHhhccC
Confidence 344455555666666666 777778889999999999999999999 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-----hcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHH
Q 048699 125 QRCAMRLSDLFCILGWLAIAF-----SKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLS 178 (312)
Q Consensus 125 rk~~~~~~~~~~~~~~~~~~~-----~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~ 178 (312)
||+++.++.++++++.++.++ +++ ...++.|++|+++||+++++.+.+..+|.+
T Consensus 93 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~ 172 (467)
T PRK09556 93 TKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA 172 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh
Confidence 999998888777766655544 233 335789999999999999999888888888
Q ss_pred HHHHhhh----hH---HHHHHHHHHHHHHHHHHHH-hhcccCChH
Q 048699 179 VTYLVGT----VV---SCLVLALIAAVPCLLQVVG-LFFIPEIAQ 215 (312)
Q Consensus 179 ~~~~~~~----~~---~w~~~~~~~~~~~~~~~~~-~~~~pes~~ 215 (312)
+++.+.. .. +|+..|.+.+++.++..+. +++.+++|.
T Consensus 173 l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 173 GAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 8776652 21 5888888777666554443 344566553
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=148.47 Aligned_cols=156 Identities=19% Similarity=0.117 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh
Q 048699 46 VVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ 125 (312)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr 125 (312)
.+...+.++++.+.... +..+.+..+|.+.+++|.+.++.+|+. +.+.++..++.+++|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~l----------d~tiv~~a~p~i~~~l~~s~~~~~~~~---~~~~l~~~~~~~~~G~l~D~~Gr 70 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAI----------DATVLHVAAPTLSMTLGASGNELLWII---DIYSLVMAGMVLPMGALGDRIGF 70 (495)
T ss_pred hHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCHhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677778888888 888889999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeec-CCCCchhHHHHHHHHHHHHHHHHHHHh
Q 048699 126 RCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEI-APKNVRGAYTATNQLLVASGLSVTYLV 183 (312)
Q Consensus 126 k~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~-~~~~~r~~~~~~~~~~~~~g~~~~~~~ 183 (312)
|++++++.++..+++++++++++ ....+.+. .|+++|+++.+++.....+|..+||.+
T Consensus 71 k~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 71 KRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 11233444 477999999999999888888888877
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHH-HhhcccCCh
Q 048699 184 G----TVVSCLVLALIAAVPCLLQVV-GLFFIPEIA 214 (312)
Q Consensus 184 ~----~~~~w~~~~~~~~~~~~~~~~-~~~~~pes~ 214 (312)
+ +..+|||.|++...++++..+ ..+++|+.+
T Consensus 151 gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 151 GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6 455899999998766665544 345567654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-16 Score=143.78 Aligned_cols=160 Identities=21% Similarity=0.177 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC
Q 048699 45 AVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG 124 (312)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G 124 (312)
.++.....+.++.+..++ +....++..|.+.+++|++..+.+++. +.+.++.++++++.|+++||+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g 83 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGF----------DFVLITLVLTEVQGEFGLTTVQAASLI---SAAFISRWFGGLLLGAMGDRYG 83 (496)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 444455566667777777 667777788999999999999999999 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 048699 125 QRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLV 183 (312)
Q Consensus 125 rk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 183 (312)
||+.++++.++.+++.+++++.++ ...++.|.+|+++|+++.++...+..+|..+++.+
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 163 (496)
T PRK03893 84 RRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV 163 (496)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888877665 34567899999999999999998888888888776
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHHHhhcccCChHhH
Q 048699 184 G----TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSI 217 (312)
Q Consensus 184 ~----~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~ 217 (312)
. ...+||+.|++..+..++.++....+||++++.
T Consensus 164 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~ 201 (496)
T PRK03893 164 YSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWK 201 (496)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 5 445899999876655555444445667776544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-16 Score=140.26 Aligned_cols=197 Identities=17% Similarity=0.114 Sum_probs=149.6
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------------
Q 048699 85 TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------- 148 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------- 148 (312)
..+++.+.++.+++. +.++.|+++++++.|+++||+|-|+++.++.++.+++.++...+.+
T Consensus 65 ~~~~~ws~~~k~~i~---ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIF---SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG 141 (466)
T ss_pred CceecCCHHHHHHHH---HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence 557899999999999 9999999999999999999999999999999999999988877655
Q ss_pred -------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hh-HHHHHHHHHHHHHHHHHHHHhh-cccCChH
Q 048699 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TV-VSCLVLALIAAVPCLLQVVGLF-FIPEIAQ 215 (312)
Q Consensus 149 -------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~-~~w~~~~~~~~~~~~~~~~~~~-~~pes~~ 215 (312)
...+.+.|.|+++|++..++...+..+|.+++..++ .. +||+..|++.++++++..++++ +..|+|.
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 456889999999999999999888888877765443 44 7999999999999888777664 3455553
Q ss_pred hHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccc--cccchhhhccccchhHHHHHHHHHHHhhhhchh
Q 048699 216 SIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKND--SRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSA 293 (312)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (312)
.. .. -.++|.+.+++.+.++..+ .+.+|+++++++-.+. +.+..++...+.+
T Consensus 222 ~h------~~----------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwa----i~~~~f~~~~~~~ 275 (466)
T KOG2532|consen 222 KH------PN----------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWA----IWISAFGGNWGFY 275 (466)
T ss_pred cC------CC----------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHH----HHHHHHHHHHHHH
Confidence 11 11 1233444444443333332 3668999999844333 3334445555788
Q ss_pred HHHhcHHHHHHHc-CCCC
Q 048699 294 AIAYYASYIFAAA-GKFT 310 (312)
Q Consensus 294 ~~~~~~~~~~~~~-G~~~ 310 (312)
.+..|.|.|++++ |++-
T Consensus 276 ~l~~y~PtY~~~VL~f~v 293 (466)
T KOG2532|consen 276 LLLTYLPTYLKEVLGFDV 293 (466)
T ss_pred HHHHHhhHHHHHHhCCCh
Confidence 9999999999986 7763
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=143.81 Aligned_cols=139 Identities=19% Similarity=0.086 Sum_probs=116.1
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
+....+...|.+.+++|.+..+.+++. +.+.++..++.++.|+++||+|||+++.++.++.+++.++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~g~s~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (399)
T TIGR00893 9 DRANLSFAAPMLQEDLGLSAAQYGYVF---SAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL 85 (399)
T ss_pred HHHhhhHhHHHHHHhhCCChhhHHHHH---HHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence 334456677889999999999999999 9999999999999999999999999999999998888888877766
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT----VVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
...++.|++|+++|++..++.+....+|.++++.++. ..+||+.|++.+++.++..+..
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLW 165 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999888888877763 4589999998877766655443
Q ss_pred -hcccCCh
Q 048699 208 -FFIPEIA 214 (312)
Q Consensus 208 -~~~pes~ 214 (312)
++.||+|
T Consensus 166 ~~~~~~~~ 173 (399)
T TIGR00893 166 LKFIPDPP 173 (399)
T ss_pred hheecCCC
Confidence 4456654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-16 Score=143.03 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=106.6
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc----c----
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK----Q---- 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~----~---- 148 (312)
.+...|++.++ |++..+.++.. +.+.++.++++++.|+++||+|||++++++.++.+++.+++++.. +
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~---~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFAL---SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 123 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHH---HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHH
Confidence 45667888887 99999999999 999999999999999999999999999999888887777766542 2
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHH-HHHHHhh----hhHHHHHHHHHHHHHHHHH-HH
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGL-SVTYLVG----TVVSCLVLALIAAVPCLLQ-VV 205 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~----~~~~w~~~~~~~~~~~~~~-~~ 205 (312)
....+.+++|+++|++++++++.+..+|. +.++.+. ...+||+.|++.++++++. ++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 22456788999999999999988888875 4455432 2348999999887776554 44
Q ss_pred HhhcccCChH
Q 048699 206 GLFFIPEIAQ 215 (312)
Q Consensus 206 ~~~~~pes~~ 215 (312)
..+++||+|+
T Consensus 204 ~~~~~~~~~~ 213 (452)
T PRK11273 204 AFAMMRDTPQ 213 (452)
T ss_pred HHHHccCCHh
Confidence 4566788764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=137.77 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHH
Q 048699 49 SSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCA 128 (312)
Q Consensus 49 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~ 128 (312)
......++.+..+. .....+...|.+.+++|++.++.+++. +.+.++..+++++.|++.||+|||++
T Consensus 8 ~~~~~~~~~~~~~~----------~~~~~g~~~~~i~~~~~~s~~~~g~~~---s~~~~~~~i~~~~~g~l~dr~g~r~~ 74 (394)
T PRK03699 8 LTWISFLSYALTGA----------LVIVTGMVMGPIAEYFNLPVSSMSNTF---TFLNAGILISIFLNAWLMEIIPLKRQ 74 (394)
T ss_pred HHHHHHHHHHHHHH----------HHHHHhhhhHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33344555666666 556667888999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh---
Q 048699 129 MRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG--- 184 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--- 184 (312)
+..+.++.+++.++++++++ ...++.|++|+++|+.+.+..+....+|..+++.+.
T Consensus 75 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 75 LIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888777655 345678899999999999888777777777766554
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHH
Q 048699 185 --TVVSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 185 --~~~~w~~~~~~~~~~~~~~~~~ 206 (312)
...+||+.|.+.+++.++..+.
T Consensus 155 ~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 155 LARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HhccccHHHHHHHHHHHHHHHHHH
Confidence 3458999999877776655443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-17 Score=146.44 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=115.5
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
+....+...|.+.+++|.+..+.+++. +...++..+++++.|+++||+|||+++.++.++..++.++.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLL---SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVM 86 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHH---HHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445557778899999999999999999 9999999999999999999999999999999999998888887766
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHH-Hhh----hhHHHHHHHHHHHHHHHHHH-H
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTY-LVG----TVVSCLVLALIAAVPCLLQV-V 205 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~----~~~~w~~~~~~~~~~~~~~~-~ 205 (312)
...++.|++|+++|+++.++.+.+..+|..+++ .+. ...+||+.|++.+++.++.. +
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (379)
T TIGR00881 87 AALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLI 166 (379)
T ss_pred HHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 345778999999999999999888888888887 333 44589999988777665543 3
Q ss_pred HhhcccCChH
Q 048699 206 GLFFIPEIAQ 215 (312)
Q Consensus 206 ~~~~~pes~~ 215 (312)
..++.||+|+
T Consensus 167 ~~~~~~~~~~ 176 (379)
T TIGR00881 167 CFLLLRDSPQ 176 (379)
T ss_pred HheeeCCCcc
Confidence 4455666653
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=149.37 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=116.6
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK----- 147 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~----- 147 (312)
..++.+..++.++++|+++..+.|++. +.+.++.+++.++.++++||+|||+.+.++.++++++++++++.+
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~---s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLIN---GSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeee---ehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCC
Confidence 556677888999999999999999999 999999999999999999999999999999999999998876542
Q ss_pred --------------------------------------------c-----------------------cceeeeecCCCC
Q 048699 148 --------------------------------------------Q-----------------------IPIYITEIAPKN 160 (312)
Q Consensus 148 --------------------------------------------~-----------------------~~~~i~e~~~~~ 160 (312)
+ ...++.|++|++
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~ 204 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK 204 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc
Confidence 1 557889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhh-------------------------H-HHHHHHHHHHHHHHHHHHHhhcccCC
Q 048699 161 VRGAYTATNQLLVASGLSVTYLVGTV-------------------------V-SCLVLALIAAVPCLLQVVGLFFIPEI 213 (312)
Q Consensus 161 ~r~~~~~~~~~~~~~g~~~~~~~~~~-------------------------~-~w~~~~~~~~~~~~~~~~~~~~~pes 213 (312)
+|+...++++.+..+|..+|++++.. . +|+..|++.+++.++..+.++++|++
T Consensus 205 ~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 205 NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999998888888777521 1 37888888888777766666666654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-16 Score=137.85 Aligned_cols=137 Identities=22% Similarity=0.255 Sum_probs=114.4
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
....+..|.+.+++|.+.++.+++. +.+.++..+++++.|+++||+|||+.+..+.++.+++.+++++.++
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTL---TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLV 98 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 4456778899999999999999999 9999999999999999999999999999999999998888887766
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-h
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-F 208 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~ 208 (312)
...++.|++|+++|++..++.+....+|..+++.++ ...+||+.+++.+++.++..+.. +
T Consensus 99 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 99 LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999888888887777665 44589999988777766554443 4
Q ss_pred cccCCh
Q 048699 209 FIPEIA 214 (312)
Q Consensus 209 ~~pes~ 214 (312)
+.||++
T Consensus 179 ~~~~~~ 184 (385)
T TIGR00710 179 ILPETL 184 (385)
T ss_pred hCCCCC
Confidence 456543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=142.93 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHH
Q 048699 51 LVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMR 130 (312)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~ 130 (312)
+.+.++.+...+ +....+...|.+.+++|.+.++.+++. +.+.++.+++.++.|+++||+|||+.++
T Consensus 5 ~~~~~~~~~~~~----------~~~~~~~~~p~~~~~~g~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 71 (485)
T TIGR00711 5 IVLMLGTFMAVL----------DSTIVNVAIPTIAGDLGSSLSQVQWVI---TSYMLANAISIPLTGWLAKRFGTRRLFL 71 (485)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHhcCCChhhhhHHH---HHHHHHHHHHHHhHHHHHHHhCcHHHHH
Confidence 344555666666 667777889999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----h
Q 048699 131 LSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----T 185 (312)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~ 185 (312)
++.++..++.++++.+++ ...++.|++|+++|+++.+++..+..+|..+++.++ .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 72 ISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 999999999988887766 446778999999999999999998888888887766 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-hhcccCCh
Q 048699 186 VVSCLVLALIAAVPCLLQVVG-LFFIPEIA 214 (312)
Q Consensus 186 ~~~w~~~~~~~~~~~~~~~~~-~~~~pes~ 214 (312)
..+||+.|++.++++++..+. .+++||++
T Consensus 152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 152 NYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred CcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 468999999887776655443 34556543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=138.59 Aligned_cols=221 Identities=13% Similarity=0.078 Sum_probs=153.0
Q ss_pred eeeeCCCccccccccCCcccc-hhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 74 IGYSSPAESGITADLGLSVRE-DLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
....+...|++.+++|++.++ .+.+. ++++.+++++.+++|+++||+|.|+++.++.+.+++..++.+++++
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~---s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEII---PVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999 99999 9999999999999999999999999999999999999999988866
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHH---HHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT---VVSCLVLAL---IAAVPCLLQVVG 206 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~---~~~w~~~~~---~~~~~~~~~~~~ 206 (312)
...++..++|+++|+++.++...+..+|.++++.++. .++||+... +......++++.
T Consensus 119 ~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~ 198 (511)
T TIGR00806 119 QLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999888877763 347876544 334444555666
Q ss_pred hhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhh---ccccchhHHHHHHHH
Q 048699 207 LFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYL---FQRNYAYSLSVGVGL 283 (312)
Q Consensus 207 ~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~ 283 (312)
.+++|..++-+ .-+++.+.......+....+++ +. .+..+..+......++.+ ++.-+..+.++.+.+
T Consensus 199 a~~LP~~~~sl---~f~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSl 269 (511)
T TIGR00806 199 ALFLKRPKRSL---FFNRLEDVRGALPCELDQMVPG---PG---GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSL 269 (511)
T ss_pred HHhCCCCchhh---hhccccccccccccccccCCCC---Cc---cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhH
Confidence 67888555433 2222111000000000000000 00 000000000111122222 233566778888999
Q ss_pred HHHhhhhchhHHHhcHHHHHHHc
Q 048699 284 MVMQPLVGSAAIAYYASYIFAAA 306 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~ 306 (312)
|++...+|++-+.+|...+.+.+
T Consensus 270 Wwa~a~~g~~qv~~Y~Q~LW~~v 292 (511)
T TIGR00806 270 WWVFNSAGYYLITYYVHTLWGTL 292 (511)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHc
Confidence 99999999999999998888766
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=134.95 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=104.1
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
...++..|.+++++|++.++.++.. +.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~---s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~ 102 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLT---ALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS 102 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence 4457889999999999999999999 9999999999999999999999999999999999999999999988
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hh-HHHHHHHHHHHHHHHHH
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TV-VSCLVLALIAAVPCLLQ 203 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~-~~w~~~~~~~~~~~~~~ 203 (312)
...++.+++| ++|+++++.+..+..+|..+++.++ .. .+||+.+.+.++..++.
T Consensus 103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3456678886 7899999998877666666655544 33 37999887665554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-16 Score=138.55 Aligned_cols=137 Identities=25% Similarity=0.283 Sum_probs=112.1
Q ss_pred eeeCCCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----
Q 048699 75 GYSSPAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----- 148 (312)
Q Consensus 75 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----- 148 (312)
....+..| .+.+++|.+..+.+++. +.+.++..+++++.|+++||+|||+++.++.++.+++.++..++++
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLF---SAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLL 89 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHH---HHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHh
Confidence 33455666 78899999999999999 9999999999999999999999999999999999998666666554
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH-h
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG-L 207 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~-~ 207 (312)
...++.|++|+++|++.++....+..+|.++++.++ ...+||+.|++.+++.++..+. .
T Consensus 90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~ 169 (352)
T PF07690_consen 90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFI 169 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHh
Confidence 456889999999999999999999999999888877 3558999999998888777653 3
Q ss_pred hcccCCh
Q 048699 208 FFIPEIA 214 (312)
Q Consensus 208 ~~~pes~ 214 (312)
+++++++
T Consensus 170 ~~~~~~~ 176 (352)
T PF07690_consen 170 LFLPEPP 176 (352)
T ss_dssp CCC---S
T ss_pred hhhhhcc
Confidence 4454443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-16 Score=138.29 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=107.0
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
.++..|.+.+++|++..+.+++. +.+.++..+++++.|+++||+|||+++.++.++.+++.++++++++
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~---s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWF---TLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999 9999999999999999999999999999999999999988888777
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hcc
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFI 210 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~ 210 (312)
....+.+++| ++|+++.++...+..+|.++++.+. ...+||+.|++.++++++..+.. +++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 1224466665 6799999999998888876644333 33479999999888776665544 344
Q ss_pred cC
Q 048699 211 PE 212 (312)
Q Consensus 211 pe 212 (312)
++
T Consensus 178 ~~ 179 (377)
T TIGR00890 178 GY 179 (377)
T ss_pred ec
Confidence 43
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=136.19 Aligned_cols=158 Identities=20% Similarity=0.116 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 048699 44 PAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT 123 (312)
Q Consensus 44 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 123 (312)
++.++..+.+.++.+...+ ......+..|.+.+++|.+..+.++.. +.+.++..+++++.|+++||+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~G~l~dr~ 75 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYI----------ANDMIQPGMLAVVEDFNAGAEWVPTSM---TAYLAGGMFLQWLLGPLSDRI 75 (406)
T ss_pred HHHHHHHHHHHHHHHHHHh----------hhhhHhcchHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666566 556667778888999999999999999 999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHH
Q 048699 124 GQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYL 182 (312)
Q Consensus 124 Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~ 182 (312)
|||+++.++.++..++.+++.++++ ...++.|.+|+++|++..++......+|..+++.
T Consensus 76 g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 155 (406)
T PRK15402 76 GRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPL 155 (406)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888777666 3345688899999999888877666667677666
Q ss_pred hh----hhHHHHHHHHHHHHHHHHHHHHh-hcccCCh
Q 048699 183 VG----TVVSCLVLALIAAVPCLLQVVGL-FFIPEIA 214 (312)
Q Consensus 183 ~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~pes~ 214 (312)
++ ...+||+.+++.+++.++..+.. +..||++
T Consensus 156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 64 44689999998877766655433 4456653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=136.85 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=108.3
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc----c
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK----Q 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~----~ 148 (312)
.........|.+++ +|++.++.++.. +++.++..+++++.|+++||+|||+.+..+.++.+++.++.+..+ +
T Consensus 42 ~~~~~~~~~p~~~~-~g~s~~~~g~~~---~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (438)
T TIGR00712 42 VRKNFALAMPYLVE-QGFSKGELGFAL---SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSS 117 (438)
T ss_pred HhccHHhhhHHHHH-cCCCHhHhHHHH---HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccch
Confidence 33444556677776 599999999999 999999999999999999999999999988888777776654421 1
Q ss_pred ---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG-----TVVSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 ---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-----~~~~w~~~~~~~~~~~~~ 202 (312)
....+.|++|+++|+++.++.+.+..+|..+++.+. ...+||+.|++.++++++
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i 197 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII 197 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 224567889999999999999998888887776443 345899999998877666
Q ss_pred HH-HHhhcccCChH
Q 048699 203 QV-VGLFFIPEIAQ 215 (312)
Q Consensus 203 ~~-~~~~~~pes~~ 215 (312)
.. +..+++||+|+
T Consensus 198 ~~~~~~~~~~~~~~ 211 (438)
T TIGR00712 198 VALFAFAMMRDTPQ 211 (438)
T ss_pred HHHHHHHhccCCHH
Confidence 44 44566777764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-17 Score=141.66 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChh
Q 048699 47 VFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQR 126 (312)
Q Consensus 47 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk 126 (312)
.+.++++.+...+... +...+....+.+++.+|++++..|++. +.+.++.++.++++|+++|||.||
T Consensus 32 ~~~l~il~~vnlmny~----------Dr~~iagv~~~v~~~fni~~s~~Gll~---~vf~v~~~i~sPl~gyLadryNR~ 98 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYA----------DRYTIAGVLKEVQTYFNISDSELGLLQ---TVFIVVFMIASPLFGYLADRYNRK 98 (493)
T ss_pred hHHHHHHHHHHHHHHh----------hhhhhhhhhHHHHHhcCCCchhccchh---HHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3344455555666666 677777788899999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 127 CAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
+++.+|..++.++.++++++.+ .+.+++|.+|..+|++++++++++..+|..+|.+.+.
T Consensus 99 ~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 99 RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 9999999999999999998865 6789999999999999999999999999888877662
Q ss_pred h-----HHHHHHHHHHHHHHHHHHHHh-hcccCC
Q 048699 186 V-----VSCLVLALIAAVPCLLQVVGL-FFIPEI 213 (312)
Q Consensus 186 ~-----~~w~~~~~~~~~~~~~~~~~~-~~~pes 213 (312)
. ..|||.|...+++++++.++. ++.+|.
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence 2 249999999999988876655 455554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=134.07 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=114.6
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
......+.+|.+.+++|.+..+.+++. +.+.++.++++++.|+++||+|||+++.++.++.+++.++++++++
T Consensus 18 ~~~~~~~~l~~~~~~~g~s~~~~g~~~---s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l 94 (382)
T PRK10091 18 AEFGIMGVLTELAHDVGISIPAAGHMI---SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLML 94 (382)
T ss_pred hHHHHHhChHHHHHHcCCCHHHHhHHH---HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 444556778899999999999999999 9999999999999999999999999999999999999999988877
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH-
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG- 206 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~- 206 (312)
...++.|+.++++|+++++....+..+|..+++.++ ...+||+.|++.+++.++..+.
T Consensus 95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 234668889999999999998888888887776654 4568999999988776655443
Q ss_pred hhcccCC
Q 048699 207 LFFIPEI 213 (312)
Q Consensus 207 ~~~~pes 213 (312)
.+++||.
T Consensus 175 ~~~lp~~ 181 (382)
T PRK10091 175 YFWVPDI 181 (382)
T ss_pred HHhCCCC
Confidence 3445654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=134.18 Aligned_cols=136 Identities=20% Similarity=0.154 Sum_probs=108.7
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
+...+..|.+.+++|.+.++.++.. +++.++..+++++.|+++||+|||+.+..+.++..++.+++.+.++
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g~~~---s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVSASL---SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHHHHH---HHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3345667788899999999999999 9999999999999999999999999999999888888887777666
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...++.|++|+++++...+.......+|..+++.++ ...+||+.|++.+++.++..+..++
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 234568889998888888877766666666666554 4569999999887777666555555
Q ss_pred ccCC
Q 048699 210 IPEI 213 (312)
Q Consensus 210 ~pes 213 (312)
++|+
T Consensus 180 ~~~~ 183 (401)
T PRK11043 180 LKPS 183 (401)
T ss_pred cCCC
Confidence 5543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=133.98 Aligned_cols=129 Identities=15% Similarity=0.035 Sum_probs=106.4
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-----c---
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-----Q--- 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-----~--- 148 (312)
....+|.+..+++.+..+.+++. ++..++.++++++.|+++||+|||++++.+.++..++.++..+.. +
T Consensus 18 ~~~~~~~~~~~~~~s~~~~g~~~---~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
T TIGR00900 18 TQVALPLYVLAGTGSASVLSLAA---LAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQ 94 (365)
T ss_pred HHHHHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 34556667778899999999999 999999999999999999999999999998888777776666554 4
Q ss_pred ------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH
Q 048699 149 ------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 ------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~ 206 (312)
...++.|+.|+++|++..++.+.+..+|.++++.++ ...+||+.|++.++..++..+.
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999988888887776 4568999998877766655444
Q ss_pred hh
Q 048699 207 LF 208 (312)
Q Consensus 207 ~~ 208 (312)
.+
T Consensus 175 ~~ 176 (365)
T TIGR00900 175 IV 176 (365)
T ss_pred HH
Confidence 33
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=132.57 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=115.8
Q ss_pred HHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHH
Q 048699 52 VAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRL 131 (312)
Q Consensus 52 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~ 131 (312)
.++...+..|+ ..+..++..|.+++++|++..+.+++. +.++++..+++++.|++.||+|||+++.+
T Consensus 7 ~~~~~f~~~G~----------~~~~~~~l~~~~~~~~~~s~~~~g~l~---s~~~~g~~i~~~~~g~l~~r~G~r~~~~~ 73 (410)
T TIGR00885 7 LITSLFALWGF----------ANDITNPMVPQFQQAFTLTAFQAALVQ---SAFYGGYFIMAIPAAIFMKKLSYKAGILL 73 (410)
T ss_pred HHHHHHHHHHH----------HHHhHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 44455666777 667778889999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh---cc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-
Q 048699 132 SDLFCILGWLAIAFS---KQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV- 186 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~---~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~- 186 (312)
+.++.+++.++...+ ++ ...++.+..|+++|++..++.+.+..+|..+++.+...
T Consensus 74 g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 74 GLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888775432 22 34577788899999999999988888888888766521
Q ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHH
Q 048699 187 -----------------------------VSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 187 -----------------------------~~w~~~~~~~~~~~~~~~~~ 206 (312)
.+||++|++.+++.++..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 154 ILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999998887766554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-15 Score=134.60 Aligned_cols=206 Identities=16% Similarity=0.142 Sum_probs=144.4
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------- 148 (312)
.+..+.++.++...+.+.+. +++++++++|.++++.+.||++-.+.+....+++++..++....++
T Consensus 68 ~l~g~~edl~~~~~~l~~~~---t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~ll 144 (495)
T KOG2533|consen 68 SLSGLKEDLKLVGNQLGVLD---TVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLL 144 (495)
T ss_pred HHcCCccccchhhhhhhhHH---HHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34457788899999999999 9999999999999999999999888888887777777766655555
Q ss_pred ----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHH-HHh
Q 048699 149 ----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV----------VSCLVLALIAAVPCLLQV-VGL 207 (312)
Q Consensus 149 ----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----------~~w~~~~~~~~~~~~~~~-~~~ 207 (312)
...+++.++.+++|+..++++..+..+|+++|.+++.. .+|||.|++.++++++.. +++
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 34577999999999999999998888888888777644 389999999988877765 455
Q ss_pred hcccCChH--hHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHH
Q 048699 208 FFIPEIAQ--SIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMV 285 (312)
Q Consensus 208 ~~~pes~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 285 (312)
+++|+.|. +. . .++|.+-..++.++.+.+ . .+++.+...+++.++++..+.+.++ .
T Consensus 225 ~~lp~~P~~~~f---l---~~~ek~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~a~~dp~vw~~~l~----~ 282 (495)
T KOG2533|consen 225 FFLPDNPSKAWF---L---TDEEKELVVERLRESPSG-----------G-IENKFKWKGFKEALKDPGVWPFSLC----Y 282 (495)
T ss_pred EEecCChhhccc---c---chHHHHHHHHHHHhccCC-----------C-cccccCHHHHHHHHhchhHHHHHHH----H
Confidence 77899885 22 1 111111111111111100 0 0001234466777777655554443 3
Q ss_pred HhhhhchhHHHhcHHHHHHH-cCCCC
Q 048699 286 MQPLVGSAAIAYYASYIFAA-AGKFT 310 (312)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~G~~~ 310 (312)
++.....+++.+|+|.++++ .|+++
T Consensus 283 ~~~~lv~~~~~~~lpl~l~~~~~~s~ 308 (495)
T KOG2533|consen 283 FFLKLVNYGFSYWLPLYLKSNGGYSE 308 (495)
T ss_pred HHHhhccccHHHHHHHHHHcCCCcCh
Confidence 33344578899999999998 35654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=132.26 Aligned_cols=135 Identities=20% Similarity=0.126 Sum_probs=103.9
Q ss_pred eCCCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-c------
Q 048699 77 SSPAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-Q------ 148 (312)
Q Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-~------ 148 (312)
..+..| .+++++|++..+.+++. +.+.++.++++++.|+++||+|||+.+.++.++..++.+++++++ +
T Consensus 20 ~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (366)
T TIGR00886 20 FSPLAVQMIKDDLGLSTAQLGNLV---AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLL 96 (366)
T ss_pred hHHhhhHHHHHHhCCCHHHhhHhh---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 466777 48899999999999999 999999999999999999999999999999999999988888887 6
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHh----hh----------hHHHHHHHH-HHHHH
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLV----GT----------VVSCLVLAL-IAAVP 199 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~----~~----------~~~w~~~~~-~~~~~ 199 (312)
...++.|++|+++|+++.++...+..+|..+++.+ .. ..+||+.++ ..+++
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 97 LRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176 (366)
T ss_pred HHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 34567899999999999998875555555444333 33 237999984 33444
Q ss_pred HH-HHHHHhhcccCCh
Q 048699 200 CL-LQVVGLFFIPEIA 214 (312)
Q Consensus 200 ~~-~~~~~~~~~pes~ 214 (312)
.+ +..+...+.+|+|
T Consensus 177 ~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 177 LLLPALLIFFVGADTP 192 (366)
T ss_pred HHHHHHHHHHhcccCC
Confidence 33 3333444556654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=132.09 Aligned_cols=135 Identities=15% Similarity=0.104 Sum_probs=109.6
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
..+.+|.+.+++|.+..+.+++. +.+.++..+++++.|+++||+|||+.+.++.++..++.+++.+.++
T Consensus 27 ~~p~~~~i~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (394)
T PRK11652 27 YVPAIADMARDLNVREGAVQAVM---AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAAS 103 (394)
T ss_pred HhccHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 45678889999999999999999 9999999999999999999999999999999988888888777665
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH-Hhhcc
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV-GLFFI 210 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~-~~~~~ 210 (312)
...+..|.+++++|+.+.+..+.+..+|..+++.++ +..+||+.|++.+++.++..+ ..++.
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 183 (394)
T PRK11652 104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWM 183 (394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhC
Confidence 223456778888999999998888888877777665 445899999988776555433 34556
Q ss_pred cCCh
Q 048699 211 PEIA 214 (312)
Q Consensus 211 pes~ 214 (312)
||++
T Consensus 184 ~~~~ 187 (394)
T PRK11652 184 PETR 187 (394)
T ss_pred CccC
Confidence 6653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=133.60 Aligned_cols=129 Identities=15% Similarity=-0.003 Sum_probs=104.5
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
.+...+.+.+++|.+.++.+++. +.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~---s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWIS---SIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHH---HHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45567888999999999999999 9999999999999999999999999999998888888887777655
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...++.++++ ++|+++.++.+.+..+|..+++.+. ..++||+.|++.+++.+++.+..++
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 1234467775 7899999999888888777766554 5568999999988877665544433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=131.33 Aligned_cols=123 Identities=12% Similarity=0.052 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHH
Q 048699 49 SSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCA 128 (312)
Q Consensus 49 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~ 128 (312)
.+..+....+..++ .........|.+++++|++..+.++.. +.+.++..+++++.|+++||+|||++
T Consensus 27 ~~~~~~~~~~~~~~----------~~~~~~~~~p~i~~~~~~s~~~~gl~~---~~~~~g~~i~~~~~g~l~dr~G~r~~ 93 (438)
T PRK10133 27 PFALLCSLFFLWAV----------ANNLNDILLPQFQQAFTLTNFQAGLIQ---SAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 33344455566666 666667788999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---Hhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 129 MRLSDLFCILGWLAIA---FSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~~---~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
+.++.++..++.+++. .+++ ...++.|+.++++|+..++..+..+.+|..+++.++
T Consensus 94 l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987753 3444 345667777777777778888888888888877664
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=137.23 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=113.3
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHH-H--HHhcc----------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLA-I--AFSKQ---------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~-~--~~~~~---------- 148 (312)
+++.+.+|.+..+.++.. ....++..++.+++|+++||+|||+.+.++.++..++.+. . ....+
T Consensus 275 ~~l~~~~g~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (490)
T PRK10642 275 SYLSHNLHYSEDHGVLII---IAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM 351 (490)
T ss_pred HHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345567788877777777 8888999999999999999999999887776543322211 1 11111
Q ss_pred -----------cceeeeecCCCCchhHHHHH-HHHHHHHHHHHHHHhhh----h-HHHHHHHHHHHHHHHHHHHHhhccc
Q 048699 149 -----------IPIYITEIAPKNVRGAYTAT-NQLLVASGLSVTYLVGT----V-VSCLVLALIAAVPCLLQVVGLFFIP 211 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~----~-~~w~~~~~~~~~~~~~~~~~~~~~p 211 (312)
...++.|.+|++.|+++.++ ++++...| .+++.+.. . .+|+.++++..+++++.++..+++|
T Consensus 352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 34466789999999999996 55554444 44444432 2 2467777776777777777777789
Q ss_pred CChHhHHHHHhc-----CCHHHHHHHHHHHhCCCCChhhhhHHHHHhh
Q 048699 212 EIAQSIIRRATI-----GKEKELDTTLQRLMGKTADISMESPDIRDYT 254 (312)
Q Consensus 212 es~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (312)
|+|+|+ .++ ++.+|+++.+++++. +.+.|.++++++.
T Consensus 431 es~~~~---~~~~~~~~~~~~~a~~~l~~~~~---~~~~~~~~i~~~~ 472 (490)
T PRK10642 431 ETANRP---LKGATPAASDIQEAKEILVEHYD---NIEQKIDDIDQEI 472 (490)
T ss_pred cccCCC---CCCccccccchhhHHHHhhcccc---cccchhhhccccc
Confidence 999998 765 889999999999873 3455555555433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=130.36 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=102.9
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
.+.+..+++.+..+.+++. +.+.++..++.+++|+++||+|||++++++.++.+++.+++++..+
T Consensus 26 ~~~~~~~~~~s~~~~~~~~---~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 102 (393)
T PRK11195 26 AIALLKELHYPDWSQPLLQ---MFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHPLLAYGLVGIGA 102 (393)
T ss_pred HHHHHHHcCCcHHHHHHHH---HHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888899999 9999999999999999999999999999999888877766555433
Q ss_pred ------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhcccCCh
Q 048699 149 ------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV---SCLVLALIAAVPCLLQVVGLFFIPEIA 214 (312)
Q Consensus 149 ------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pes~ 214 (312)
...++.|++|+++|++++++.+....+|.++||.++... .|+..+.+.+...++..+..+++||+|
T Consensus 103 a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 103 AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 346789999999999999999988888888888876332 466666555544444445556677765
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-14 Score=130.22 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
+....++..|.+.+++|.+..+.+++. +.+.++..++.++.|+++||+|||++++.+.++..++.+++.++++
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVI---VSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNEL 101 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 555567788989999999999999999 9999999999999999999999999999998888888887777665
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
...++.|.+|+++|+++.+.......+|..+++.++ +..+||+.|.+....+++..+..
T Consensus 102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~ 181 (471)
T PRK10504 102 LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT 181 (471)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 334568899999999999999888888887777665 45689999998777665554433
Q ss_pred -hcccCC
Q 048699 208 -FFIPEI 213 (312)
Q Consensus 208 -~~~pes 213 (312)
...|+.
T Consensus 182 ~~~~~~~ 188 (471)
T PRK10504 182 LMLMPNY 188 (471)
T ss_pred HHhCCCc
Confidence 334443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=128.34 Aligned_cols=135 Identities=23% Similarity=0.297 Sum_probs=113.2
Q ss_pred eeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------
Q 048699 76 YSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------- 148 (312)
...+..|.+.+++|++..+.+++. +.+.++..++.++.|+++||+|||+++..+.++.+++.+++.+.++
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTL---SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 345778888899999999999999 9999999999999999999999999999999999988888877766
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH-Hhhc
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV-GLFF 209 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~-~~~~ 209 (312)
...++.|++|+++|++..++.+.+..+|..+++.++ ...+||+.|++.+++.++..+ ..++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 346778999999999999999888888888887765 445899999888777666544 3455
Q ss_pred ccCC
Q 048699 210 IPEI 213 (312)
Q Consensus 210 ~pes 213 (312)
+||+
T Consensus 166 ~~~~ 169 (377)
T PRK11102 166 IPET 169 (377)
T ss_pred CCcc
Confidence 6664
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=132.84 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=101.4
Q ss_pred eeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------
Q 048699 76 YSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------- 148 (312)
..+..++++..++|-+ +...|+. +...++..++.++.|+++|.+|||++++.+.++..+|.++++.+++
T Consensus 62 ~~a~~l~~I~~diG~~-~~~~w~~---~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag 137 (599)
T PF06609_consen 62 LPASILPYINADIGGS-DNWSWFS---TAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAG 137 (599)
T ss_pred ccHHHHHHHHHhcCCC-ccchHHH---HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHH
Confidence 3355677888889864 6778888 8999999999999999999999999999999999999999999888
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
....++|..|.+.|+...++......+...+++.++ ..-+|||.|++.+++..+.++..
T Consensus 138 ~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 138 MVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 334579999999998887766655544333344443 34489999999888766655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=119.45 Aligned_cols=207 Identities=17% Similarity=0.129 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHH
Q 048699 50 SLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAM 129 (312)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~ 129 (312)
.+.+....+++|+ ........+|.+++.|+++..+.+++. ..++.|+.+++++.|++.+|+|+|+.+
T Consensus 15 ~v~~t~lFfl~G~----------~~~l~diLip~l~~~f~ls~~~a~liq---faff~gYf~~~lpa~~~~kk~gyk~gi 81 (422)
T COG0738 15 FVLLTSLFFLWGF----------ITCLNDILIPHLKEVFDLTYFEASLIQ---FAFFGGYFIMSLPAGLLIKKLGYKAGI 81 (422)
T ss_pred HHHHHHHHHHHHH----------HhhcchhhHHHHHHHhCccHHHHHHHH---HHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence 3444555677788 777778899999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc------------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 130 RLSDLFCILGWLAIAFSKQ------------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~------------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
++|..++++++.+..-+.+ ...|+....+++.....+++.+.++++|.+++|+++.
T Consensus 82 ~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 82 VLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999988864433 6678888999988899999999999999999998873
Q ss_pred hH-----------------------HHHHHHHHHHHHHHHHHHHhhc--ccCChHhHHHHHhcCCHHHHHHHHHHHhCCC
Q 048699 186 VV-----------------------SCLVLALIAAVPCLLQVVGLFF--IPEIAQSIIRRATIGKEKELDTTLQRLMGKT 240 (312)
Q Consensus 186 ~~-----------------------~w~~~~~~~~~~~~~~~~~~~~--~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (312)
.+ .|+++|...+...++..+.... .|+.+.
T Consensus 162 ~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~------------------------- 216 (422)
T COG0738 162 SLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV------------------------- 216 (422)
T ss_pred HHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-------------------------
Confidence 22 3667777666555444443322 122110
Q ss_pred CChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHH-cCCCC
Q 048699 241 ADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAA-AGKFT 310 (312)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~ 310 (312)
+ .+++.+.++....+++++++.+.-.+..+++...+.. +..|++.++.+ .|++.
T Consensus 217 -----~-------~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva----~gsfl~~y~~~~~g~~~ 271 (422)
T COG0738 217 -----A-------APSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVA----IGSFLVSYLEELLGLNE 271 (422)
T ss_pred -----c-------cccccccccchHHHHHhChHHHHHHHHHHHHHhHHHH----HHHHHHHHHHhcCCccH
Confidence 0 0000111112567899999999999999999888876 44556666666 56554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-14 Score=126.25 Aligned_cols=133 Identities=17% Similarity=0.130 Sum_probs=110.4
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------- 148 (312)
.+..|.+.+++|.+..+.++.. +.+.++..+++++.|+++||+|||+.+.++.++..++.+++...++
T Consensus 23 ~~~lp~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 99 (392)
T PRK10473 23 LVGLPRIAADLNASEAQLHIAF---SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRF 99 (392)
T ss_pred hhhHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4678889999999999999999 9999999999999999999999999999999988888888777665
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH-hhccc
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG-LFFIP 211 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~-~~~~p 211 (312)
...++.|.+|+++|+++.++.+....+|..+++.++ ...+|++.+++.+++.++..+. .+++|
T Consensus 100 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 100 LQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred HHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345778999999999999999888888877777765 3458999998887776555443 34556
Q ss_pred CC
Q 048699 212 EI 213 (312)
Q Consensus 212 es 213 (312)
|+
T Consensus 180 ~~ 181 (392)
T PRK10473 180 ET 181 (392)
T ss_pred CC
Confidence 54
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=124.52 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------------------------cceeee
Q 048699 104 LMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-----------------------------IPIYIT 154 (312)
Q Consensus 104 ~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~i~ 154 (312)
...++..+++++.|+++||+|||++++++.++..++.++++++++ .+.++.
T Consensus 43 ~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~ 122 (394)
T TIGR00883 43 AGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLA 122 (394)
T ss_pred HHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhh
Confidence 344455678999999999999999999999988888877665543 345789
Q ss_pred ecCCCCchhHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHhhcccCChH
Q 048699 155 EIAPKNVRGAYTATNQLLVASGLSVTYLVG------------TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQ 215 (312)
Q Consensus 155 e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~------------~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~ 215 (312)
|++|+++|++..+..+.+..+|.++++.+. ..++||+.+++.+++.++..+.....||+++
T Consensus 123 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (394)
T TIGR00883 123 EYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPV 195 (394)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 999999999999999999888888887654 2357999998877776666555555666553
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=123.67 Aligned_cols=138 Identities=19% Similarity=0.117 Sum_probs=107.0
Q ss_pred eeeeeCCCccccccccCCcccch-----hHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc
Q 048699 73 QIGYSSPAESGITADLGLSVRED-----LLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK 147 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~ 147 (312)
..+...+.+|.+.+++|.+..+. +++. +...++..+++++.|+++||+|||+.+..+.++.+++.+++.+.+
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 105 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVF---SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ 105 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667888888899886653 5666 999999999999999999999999999999888888877776665
Q ss_pred c--------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH
Q 048699 148 Q--------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQ 203 (312)
Q Consensus 148 ~--------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~ 203 (312)
+ ...++.+..|+++|+++.+....+..+|..+++.++ +..+||+.+++.+++.++.
T Consensus 106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 185 (408)
T PRK09874 106 NIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLC 185 (408)
T ss_pred hHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 5 223567888999999999999888888887777665 4568999999887776655
Q ss_pred HHHh-hcccCC
Q 048699 204 VVGL-FFIPEI 213 (312)
Q Consensus 204 ~~~~-~~~pes 213 (312)
.+.. +++||.
T Consensus 186 ~~~~~~~~~~~ 196 (408)
T PRK09874 186 FLVTLFCIREN 196 (408)
T ss_pred HHHHHHHhccC
Confidence 4433 444543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=118.34 Aligned_cols=191 Identities=21% Similarity=0.167 Sum_probs=138.8
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
.++..+.+.+++++|+.|.+++. ++..+...+.-++.|.+.||+|.|++..++.++..+-++..+++.+
T Consensus 33 ~s~l~~~i~~~~~LS~~q~~ll~---aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll 109 (417)
T COG2223 33 FSPLGVFIKSDFGLSEGQKGLLV---AIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLL 109 (417)
T ss_pred HHHHHhhhccccCCCHHHHHHHH---HHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHH
Confidence 35566777899999999999999 9999999999999999999999999999999999998888877755
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHH---HHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHH-
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQ---LLVASGLSVTYLVGTVVS---CLVLALIAAVPCLLQVVG- 206 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~---~~~~~g~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~- 206 (312)
...++++++|++++|.++++.. .+..+.++++|.+....+ |+....+..+..++..+.
T Consensus 110 ~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~ 189 (417)
T COG2223 110 VIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA 189 (417)
T ss_pred HHHHHHhcccceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999996 334455566677777777 998888877776665444
Q ss_pred hhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHH
Q 048699 207 LFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVM 286 (312)
Q Consensus 207 ~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 286 (312)
++.+.+.|... ...+. ..+..++.+++++..|.+.+ ..+
T Consensus 190 ~~~~~d~p~~r---~~~~~----------------------------------~~~~~~~~v~~~~~~W~lsl----lY~ 228 (417)
T COG2223 190 WLGMNDVPEHR---ASVKP----------------------------------QLPAQLKAVFSNKDTWLLSL----LYF 228 (417)
T ss_pred HHHhCCChhhh---ccccc----------------------------------cchhHHHHHhcCcchHHHHH----HHH
Confidence 34444444211 00000 00023445666655444333 333
Q ss_pred hhhhchhHHHhcHHHHHHHc-CCCCC
Q 048699 287 QPLVGSAAIAYYASYIFAAA-GKFTT 311 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-G~~~~ 311 (312)
..|.++-++..|.|.++++. |+++.
T Consensus 229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~ 254 (417)
T COG2223 229 ATFGGFVGFSAYLPMYLVTQFGLSPV 254 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 44556778899999999875 87753
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=124.46 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=99.3
Q ss_pred eCCCcccccc-ccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh-----cc--
Q 048699 77 SSPAESGITA-DLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS-----KQ-- 148 (312)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~-----~~-- 148 (312)
.++..+.+.+ ++|++.++.+++. ++..+++.++.++.|+++||+|.|+++.++.++..+..+..+++ ++
T Consensus 53 ~~~l~~~~~~~~~~ls~~q~g~l~---ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~ 129 (462)
T PRK15034 53 FSAVTVNLNKIGFNFTTDQLFLLT---ALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFG 129 (462)
T ss_pred HHHHHHHhhhhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHH
Confidence 3555566655 7999999999999 99999999999999999999999999999999999998888875 34
Q ss_pred ------------------cceeeeecCCCCchhHHHHHHHHHHHHHHH----HHHHhh-----h-------------hHH
Q 048699 149 ------------------IPIYITEIAPKNVRGAYTATNQLLVASGLS----VTYLVG-----T-------------VVS 188 (312)
Q Consensus 149 ------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~----~~~~~~-----~-------------~~~ 188 (312)
....+++++|+++||+++++.....++|.. ++|.+. . ..+
T Consensus 130 ~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 130 IFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 345679999999999999999655555554 444322 1 234
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 048699 189 CLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 189 w~~~~~~~~~~~~~~~~~~~ 208 (312)
||..+++..++.++..+..+
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~ 229 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAW 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777766655554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=120.76 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=97.7
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
...++.+|.+.+++|.+.++.+++. +.+.++..+++++.|+++||+|||+++.++.++..++.+.+ ..++
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~---s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLT---ALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 4457788999999999999999999 99999999999999999999999999999888777766655 3333
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhH--HHHHHHHHHHHHHHH
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVV--SCLVLALIAAVPCLL 202 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~--~w~~~~~~~~~~~~~ 202 (312)
.+.++.|.+| ++|+++.+..+.+..+|..+++.+. ... +||+.|.+.+++.++
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3345577775 6899999999888888887776554 222 389888776654433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=125.51 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=95.7
Q ss_pred eCCCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc--------
Q 048699 77 SSPAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-------- 147 (312)
Q Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-------- 147 (312)
..+.+| ++.+++|.+..+.+++. +.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++.
T Consensus 34 ~~~~l~~~i~~~~g~s~~~~g~~~---~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 34 PLAVLPGYVHDQLGFSAFLAGLVI---SLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHH---HHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence 445555 46788999999999999 999999999999999999999999999998877766544433211
Q ss_pred c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q 048699 148 Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLL 202 (312)
Q Consensus 148 ~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~ 202 (312)
+ ...++.|+.|+++|+++.++.+.+..+|..+++.++ ..++|++.+++..+..++
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1 234567889999999999988777776666665554 556899988776665544
Q ss_pred HH
Q 048699 203 QV 204 (312)
Q Consensus 203 ~~ 204 (312)
..
T Consensus 191 ~~ 192 (399)
T PRK05122 191 GL 192 (399)
T ss_pred HH
Confidence 43
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=120.51 Aligned_cols=122 Identities=18% Similarity=0.125 Sum_probs=92.7
Q ss_pred eCCCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH---Hh-----c
Q 048699 77 SSPAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA---FS-----K 147 (312)
Q Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~---~~-----~ 147 (312)
..+.+| ++.+++|.+..+.+++. +.+.++..+++++.|+++||+|||+++..+.+...++.+... .. .
T Consensus 34 ~~p~l~~~l~~~lg~s~~~~g~~~---s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (392)
T PRK12382 34 PLPVIPLFVHHDLGFGNTMVGIAV---GIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPF 110 (392)
T ss_pred HhhhhhHHHHHhcCCcHHHHHHHH---HHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhH
Confidence 345566 46788999999999999 999999999999999999999999999988776655433211 10 1
Q ss_pred c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHH
Q 048699 148 Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCL 201 (312)
Q Consensus 148 ~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~ 201 (312)
+ ...++.|+.|+++|+++++..+.+...|..+++.++ ...+|++.+.+..+..+
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~ 189 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPL 189 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 1 224567889999999999999888877777776665 44689887666544433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=121.58 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=97.5
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
..+...+..|.+.+++|.+..+.+++. +.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 21 ~~~~~~~~lp~~~~~~~~s~~~~G~~~---s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (381)
T PRK03633 21 AIAVLNTLVPLWLAQEHLPTWQVGVVS---SSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSW 97 (381)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 667778889999999999999999999 9999999999999999999999999999999999999888888777
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV 186 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 186 (312)
....+.+..++++|+++++.+..+..+|..+++.+...
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12345677888999999999999999999988888743
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-14 Score=125.72 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=99.4
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-----ChhHHH-HHHHHHHHHHHHHHHHhcc
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-----GQRCAM-RLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----Grk~~~-~~~~~~~~~~~~~~~~~~~ 148 (312)
+..++..|.+.+++|++.++.++.. .. .+...+ .+++|+++||+ |||+.+ +.+.++.++.....++..+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~---~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFS---LV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHH---HH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4456678888999999999999887 66 444444 88999999998 898875 4556655555555544422
Q ss_pred ------------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHH--------HHHH
Q 048699 149 ------------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVS--------CLVL 192 (312)
Q Consensus 149 ------------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~--------w~~~ 192 (312)
...++.|++|+++|+++.++...+..+|.++++.++ ...+ ||..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 345688999999999999999998888888887776 4456 9999
Q ss_pred HHHHHHHHHHHHHHhhc-ccC
Q 048699 193 ALIAAVPCLLQVVGLFF-IPE 212 (312)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~pe 212 (312)
|++.+++.++..+..++ .||
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e 180 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKE 180 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 99988877666554443 455
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=123.03 Aligned_cols=138 Identities=19% Similarity=0.153 Sum_probs=97.5
Q ss_pred eeeCCCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHH-HHHHHHHHHHHHHHhcc----
Q 048699 75 GYSSPAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRL-SDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 75 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~-~~~~~~~~~~~~~~~~~---- 148 (312)
+...+.+| ++.+++|.+..+.+++. +.+.++..+.+++.|+++||+|||+.+++ +.++..++.++++++++
T Consensus 14 ~~~~~~l~~~l~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (375)
T TIGR00899 14 ALQFPTLSLFLSEEVRARPAMIGLFY---TGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLL 90 (375)
T ss_pred HHHhhHHHHHHHcccCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44455555 46788999999999999 99999999999999999999999887654 45555566666666655
Q ss_pred -----------------cceeeeecCCCCchhHH--HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 048699 149 -----------------IPIYITEIAPKNVRGAY--TATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~ 205 (312)
...++.|+.|++.|+.. .+....+..+|..+++.++ +.++||+.|++.+++.++..+
T Consensus 91 ~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~ 170 (375)
T TIGR00899 91 LVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGV 170 (375)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 12344566777666643 4555555566666665554 566899999998887666554
Q ss_pred H-hhcccCChH
Q 048699 206 G-LFFIPEIAQ 215 (312)
Q Consensus 206 ~-~~~~pes~~ 215 (312)
. .+++||.|+
T Consensus 171 ~~~~~~~~~~~ 181 (375)
T TIGR00899 171 LVWLFLPSYPR 181 (375)
T ss_pred HHHHhCCCccc
Confidence 4 345777653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.8e-14 Score=126.04 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=104.8
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
.+++.+++|++..+.++.. +...++..+++++.|+++||+|||+++.++.++.+++.++.++.++
T Consensus 31 ~~~l~~~~g~s~~~~g~~~---s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 107 (395)
T PRK10054 31 TIYLSRQYSLSVDLIGYAM---TIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALIN 107 (395)
T ss_pred HHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567788999999999999 9999999999999999999999999999998888887777776665
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHh-hcccC
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV---VSCLVLALIAAVPCLLQVVGL-FFIPE 212 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~-~~~pe 212 (312)
...+..|..|+++|+++.++......+|..+++.++.. .+|+..|++.+++.++..+.. +++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 23455788899999999999988888888888877633 479999998877766654433 33444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=122.10 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=86.8
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH---Hh-cc--------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA---FS-KQ-------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~---~~-~~-------- 148 (312)
++.+.+++|.+.++.+++. +.+.++..++.++.|+++||+|||+++..+.++.+++.+++. .. .+
T Consensus 36 ~~~~~~~~g~s~~~~g~~~---~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 36 LSPFLKALGLSPQQSASAF---TLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred HHHHHHHhCCCHHHhHHHH---HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 3445578999999999999 999999999999999999999999999999988887765442 21 22
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHH-HHHHHhh----hhHHHHHHHHH
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGL-SVTYLVG----TVVSCLVLALI 195 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~----~~~~w~~~~~~ 195 (312)
...++.+.+|+++|++++++.+.+..+|. ++++.++ ..++|+..++.
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 12345678899999999999998888886 4666654 34565544443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-13 Score=119.56 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=105.7
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------- 148 (312)
..+++++++|.+..+.|+.. +...++..+.+++.|+++||+|||+++..+.++..++.+++.+.++
T Consensus 33 ~~~~~~~~~g~s~~~~gl~~---~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 33 ISIRFVDQLGWAAVMVGIAL---GLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHhCCcHHHHHHHH---HHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34467788999999999999 9999999999999999999999999999999999999888877766
Q ss_pred ----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHH-hhcccC
Q 048699 149 ----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT---VVSCLVLALIAAVPCLLQVVG-LFFIPE 212 (312)
Q Consensus 149 ----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~-~~~~pe 212 (312)
...++.|..|+++|+++.++......+|..+|+.++. ..+|++.|++.++..++..+. .++.||
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2356688999999999999998888888887777653 458999999877765554433 334443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-13 Score=116.88 Aligned_cols=134 Identities=31% Similarity=0.361 Sum_probs=113.4
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
......+..|.+.++++.+..+.+++. +...++..+++++.|+++||+|||+.+.++.++..++.++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIV---SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 445567777888888999999999999 9999999999999999999999999999999999998888877655
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
...++.|+.|+++|++..++.+....+|..+++.++ +..+|++.+++.+++.++..+..
T Consensus 91 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred HHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999999988888887776 44579999998887776665554
Q ss_pred hc
Q 048699 208 FF 209 (312)
Q Consensus 208 ~~ 209 (312)
++
T Consensus 171 ~~ 172 (352)
T cd06174 171 LF 172 (352)
T ss_pred HH
Confidence 43
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=122.72 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=102.6
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHH-----hcc----
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAF-----SKQ---- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~-----~~~---- 148 (312)
....|.+.++++.+..+.+++. +...++..+++++.|+++||+|||+++..+.++.+++.+..+. .++
T Consensus 37 ~~~~~~~~~~~~~s~~~~g~~~---~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (417)
T PRK10489 37 GVAVPVQIQMMTGSTLQVGLSV---TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 4456777778888888999999 9999999999999999999999999887766555544433221 111
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
...++.|+.|+++|+++.++.+....+|..+|+.++ ...+|++.+++.++..++..+..
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999998888888888877765 44589999988877766666656
Q ss_pred hcccCCh
Q 048699 208 FFIPEIA 214 (312)
Q Consensus 208 ~~~pes~ 214 (312)
+.+|+++
T Consensus 194 ~~l~~~~ 200 (417)
T PRK10489 194 LRLPALP 200 (417)
T ss_pred HhCCCCC
Confidence 6666643
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.2e-13 Score=119.68 Aligned_cols=137 Identities=18% Similarity=0.127 Sum_probs=104.8
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-----ChhH-HHHHHHHHHHHHHHHHHHh
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-----GQRC-AMRLSDLFCILGWLAIAFS 146 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----Grk~-~~~~~~~~~~~~~~~~~~~ 146 (312)
..+.....+|.+.++.|++.++.|++. .+... .+..+++|+++||+ |||+ .+.++.++.+++..+.++.
T Consensus 14 ~~~~~~~~~~~~l~~~g~~~~~ig~~~---~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 14 PLALTSGTLQAWMTVEGLDIQTIGFFS---LVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 566667778877778899999999988 66665 58899999999999 8876 5677677776666665554
Q ss_pred cc------------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----h-hHHHHHHHHHHH
Q 048699 147 KQ------------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----T-VVSCLVLALIAA 197 (312)
Q Consensus 147 ~~------------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~-~~~w~~~~~~~~ 197 (312)
.. ..+++.|+.|+++|+++.++...+..+|.++++.+. . ..+||..|++.+
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a 168 (402)
T PRK11902 89 PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMA 168 (402)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHH
Confidence 21 345778999999999999999888888888876654 3 248999999988
Q ss_pred HHHHHHHHHhhcccCCh
Q 048699 198 VPCLLQVVGLFFIPEIA 214 (312)
Q Consensus 198 ~~~~~~~~~~~~~pes~ 214 (312)
++.++..+..++.||++
T Consensus 169 ~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 169 GLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 77766655555666653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=120.80 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=106.7
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh------cc---
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS------KQ--- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~------~~--- 148 (312)
+...+.+++++|++.++.+++. ++. ....++++++|+++||+|+|+++.++.+++.++.++++++ .+
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~---svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~ 122 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTIT---TVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR 122 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence 3455678999999999998887 663 3445677789999999999999999999999999998886 22
Q ss_pred ------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHH-HHHhhhhH--HHHHHHHHHHHHHHHHHHH-
Q 048699 149 ------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSV-TYLVGTVV--SCLVLALIAAVPCLLQVVG- 206 (312)
Q Consensus 149 ------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~--~w~~~~~~~~~~~~~~~~~- 206 (312)
....+.+++| ++||++.++...+.++|+.+ +++....+ +|+..|++.+++.++..+.
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345677886 78999999999999999975 44443333 7888887777665554433
Q ss_pred hhcc--cCChHhHHHHHhcCCHHHHHHHHHH
Q 048699 207 LFFI--PEIAQSIIRRATIGKEKELDTTLQR 235 (312)
Q Consensus 207 ~~~~--pes~~~~~~~~~~~~~~~~~~~~~~ 235 (312)
.+++ |+.+++. ..+++.++.++..++
T Consensus 202 ~~~vr~p~~~~~~---~~~~~~~~~~~~~~~ 229 (591)
T PTZ00207 202 IVFMRLPPFHLTG---YQEKHLDEEEKAQRL 229 (591)
T ss_pred HhheeCCcchhhc---ccccCCCHHHHHHHh
Confidence 3333 4455544 444443444444333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=120.79 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=99.7
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-----ChhHH-HHHHHHHHHHHHHHHHHh
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-----GQRCA-MRLSDLFCILGWLAIAFS 146 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----Grk~~-~~~~~~~~~~~~~~~~~~ 146 (312)
........+|.+.++.|.+.++.+... . ..... ++.+++|+++||+ |||+. ++++.+..+++...+++.
T Consensus 27 ~~~~~~~~l~~~l~~~g~~~~~ig~~~---~-~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~ 101 (491)
T PRK11010 27 PLALTSGTLQAWMTVENIDLKTIGFFS---L-VGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL 101 (491)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHH---H-HHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 334455667777777888888887754 2 22222 6889999999999 99986 556666666666555554
Q ss_pred cc------------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----h-hHHHHHHHHHHH
Q 048699 147 KQ------------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----T-VVSCLVLALIAA 197 (312)
Q Consensus 147 ~~------------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~-~~~w~~~~~~~~ 197 (312)
.. ..+++.|++|+++|+++.++...+..+|.++++.+. . ..+||..|++.+
T Consensus 102 ~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a 181 (491)
T PRK11010 102 EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMA 181 (491)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 21 446778999999999999999998888888876554 4 458999999988
Q ss_pred HHHHHHHHHhhcccCCh
Q 048699 198 VPCLLQVVGLFFIPEIA 214 (312)
Q Consensus 198 ~~~~~~~~~~~~~pes~ 214 (312)
++.++..+..+++||++
T Consensus 182 ~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 182 ALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 87777666555667754
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=112.52 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=85.1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------------c
Q 048699 90 LSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------------------I 149 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------------------~ 149 (312)
.+..-.|.+. +.+.++..+.++.+|.++||+|||.+++.|++..++..++.+.+.+ .
T Consensus 65 ~~~~yaGflG---SsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~ 141 (451)
T KOG2615|consen 65 ASVFYAGFLG---SSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVI 141 (451)
T ss_pred ccchhhhhHh---hHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH
Confidence 3455678899 9999999999999999999999999999999999998888777766 4
Q ss_pred ceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 048699 150 PIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVS 188 (312)
Q Consensus 150 ~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 188 (312)
-++++|+++++.|+.+++..+..+++|.++||.++.++.
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla 180 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLA 180 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHH
Confidence 478899999999999999999999999999999986553
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=106.83 Aligned_cols=192 Identities=17% Similarity=0.135 Sum_probs=145.7
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
.....++.++.+++++|++.+..|++. ++..+...+.+++..+++.|+|.++.+..++++..++.++-.....
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~aGlLT---tLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~ 103 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSVAGLLT---TLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLF 103 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 345567889999999999999999999 9999999999999999999999999999999999999887655422
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhH-HHHHHHHHHHHHHHHHHHHh
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVV-SCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~-~w~~~~~~~~~~~~~~~~~~ 207 (312)
.|..+-+.+|++. +..+++|.+...+|+.+++.+. .+. +||....+-+.+++++++.+
T Consensus 104 ~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W 182 (395)
T COG2807 104 LGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW 182 (395)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 6788888887654 8999999888888777776554 344 79999999999988887765
Q ss_pred hcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHh
Q 048699 208 FFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQ 287 (312)
Q Consensus 208 ~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 287 (312)
+ |...|. +. ...+.+..+-..++|++.-|. +.+++..
T Consensus 183 l--Pq~~r~--------~~-----------------------------~~~~~~~~~~~~vw~~~~aW~----vtLfmGl 219 (395)
T COG2807 183 L--PQALRE--------QA-----------------------------ASIATKLVSVRKVWRSPLAWQ----VTLFMGL 219 (395)
T ss_pred h--hhcccc--------cc-----------------------------cccccccccccccccCchhHH----HHHHHHh
Confidence 4 321110 00 000112223345677755555 4445555
Q ss_pred hhhchhHHHhcHHHHHHHcCCCCC
Q 048699 288 PLVGSAAIAYYASYIFAAAGKFTT 311 (312)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~G~~~~ 311 (312)
+...+|.+..|+|.++.+.|+|+.
T Consensus 220 qS~~~Y~~~~WLP~ili~~G~sa~ 243 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRGLSAA 243 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHH
Confidence 566788999999999999999874
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=118.44 Aligned_cols=129 Identities=11% Similarity=0.099 Sum_probs=100.8
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh-cChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL-TGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
.....++++++|++.++.+++. +.+.....+..+++|+++|| +|||++++++.+++.++.++++++.+
T Consensus 35 ~~l~~yl~~~lg~~~~~a~~i~---~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~ 111 (489)
T PRK10207 35 GILAVFFVKQLGFSQEQAFITF---GAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIA 111 (489)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 3445577888999999999998 88888888889999999999 99999999999999999988877643
Q ss_pred --------------cceeeeecCCCC--chhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 --------------IPIYITEIAPKN--VRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 --------------~~~~i~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
...++.|.+|++ +|+.+.+++.++.++|..+++.++ ..++||+.|++.++..++.++.+.
T Consensus 112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~ 191 (489)
T PRK10207 112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYF 191 (489)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 346789999877 457778878777777776665554 667999999886554444443333
Q ss_pred c
Q 048699 209 F 209 (312)
Q Consensus 209 ~ 209 (312)
+
T Consensus 192 ~ 192 (489)
T PRK10207 192 A 192 (489)
T ss_pred H
Confidence 3
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-12 Score=114.10 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=97.0
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh----hcChhHHHHHH-HHHHHHHHHHHHHhc------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD----LTGQRCAMRLS-DLFCILGWLAIAFSK------ 147 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~Grk~~~~~~-~~~~~~~~~~~~~~~------ 147 (312)
+..+.+.+++|.+....+++. .+..+..++.+++.|+++| |+|||+.++++ .+...++.++++++.
T Consensus 25 ~~l~~yl~~lg~~~~~~~~i~---~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~ 101 (477)
T TIGR01301 25 SLLTPYVQELGIPHAWASIIW---LCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLF 101 (477)
T ss_pred HHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence 334445677999999999998 9999999999999999999 59999998875 444444444433311
Q ss_pred ---------------------------c-----cceeeeecCCCCch--hHHHHHHHHHHHHHHHHHHHhhhhH------
Q 048699 148 ---------------------------Q-----IPIYITEIAPKNVR--GAYTATNQLLVASGLSVTYLVGTVV------ 187 (312)
Q Consensus 148 ---------------------------~-----~~~~i~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~------ 187 (312)
+ ..+++.|..|+++| +.+.++.+...++|.++++.++...
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 1 44688999998865 5788888888888888888776321
Q ss_pred -------------HHHHHHHHHHHHHHHHHHH-hhcccCCh
Q 048699 188 -------------SCLVLALIAAVPCLLQVVG-LFFIPEIA 214 (312)
Q Consensus 188 -------------~w~~~~~~~~~~~~~~~~~-~~~~pes~ 214 (312)
+.+..|++.+++.++..+. .+..+|.|
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 4577888877776665544 45677765
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=115.12 Aligned_cols=132 Identities=16% Similarity=0.029 Sum_probs=108.1
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------- 148 (312)
+...+.++++++.+.++.+|+. ++......+.+++.+.+.||+|.|.+.+.|.++..++.++..++++
T Consensus 66 Gv~~~~~~~~f~~s~~~~~~i~---sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~g 142 (509)
T KOG2504|consen 66 GLLFEELMDYFGSSSSQIAWIG---SLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFG 142 (509)
T ss_pred hhhHHHHHHHhCCCccHHHHHH---HHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3567788999999999999999 9999999999999999999999999999999999999999999988
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hcc
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFI 210 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~ 210 (312)
..+.+. .+.+++|+.++|+...+.++|.++-+.+. ...|||+.+++.+.+.+-.++.. ..-
T Consensus 143 vi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 143 VIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred HHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 223334 45578999999999999999988777665 45599999988777765544443 333
Q ss_pred cCC
Q 048699 211 PEI 213 (312)
Q Consensus 211 pes 213 (312)
|.+
T Consensus 222 p~~ 224 (509)
T KOG2504|consen 222 PLS 224 (509)
T ss_pred CCC
Confidence 433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=111.72 Aligned_cols=128 Identities=14% Similarity=0.047 Sum_probs=84.2
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH---Hh----cc----
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA---FS----KQ---- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~---~~----~~---- 148 (312)
...++.+++|++..+.+++. +.+.++..+++++.|+++||+|||++++++..+.+++..... .. ..
T Consensus 33 ~~~~l~~~~g~s~~~~g~~~---s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (420)
T PRK09528 33 FPIWLHDINGLSGTDTGIIF---SANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLG 109 (420)
T ss_pred HHHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777999999999999 999999999999999999999999998775544333221100 00 00
Q ss_pred --------------cceeeeecCC--CCchhHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 --------------IPIYITEIAP--KNVRGAYTATNQLLVASGLSVTYLVGTV---VSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 --------------~~~~i~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
....+.++.+ .++++...+.......+|..+++.++.. .+|++.|++.++++++..+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 110 AIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhc
Confidence 1111222222 2345556666666666666666666532 37999998888777666555544
Q ss_pred c
Q 048699 210 I 210 (312)
Q Consensus 210 ~ 210 (312)
+
T Consensus 190 ~ 190 (420)
T PRK09528 190 A 190 (420)
T ss_pred c
Confidence 3
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=110.05 Aligned_cols=120 Identities=11% Similarity=-0.021 Sum_probs=82.0
Q ss_pred eeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHH----HHHHHHHHHHHHHHHHhcc-
Q 048699 74 IGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAM----RLSDLFCILGWLAIAFSKQ- 148 (312)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~----~~~~~~~~~~~~~~~~~~~- 148 (312)
.+...+.+|.+.+++|.+..+.+++. +.+.++..+++++.|+++||+||+... ..+..+..+ ..+..+++
T Consensus 20 ~~~~~p~l~~~l~~~g~s~~~ig~~~---s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 94 (382)
T TIGR00902 20 YGIFLPFFPAWLKGIGLGEEMIGLLI---GAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNA 94 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhH
Confidence 35556778888889999999999999 999999999999999999999984332 222221111 11122222
Q ss_pred --------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH
Q 048699 149 --------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPC 200 (312)
Q Consensus 149 --------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~ 200 (312)
...+..+. .++|++..+....+..+|.++++.++ +.++||..|.+..+..
T Consensus 95 ~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 95 WLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 11222332 46678888888777777777777654 5569999988765553
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=109.99 Aligned_cols=122 Identities=13% Similarity=0.106 Sum_probs=78.3
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH---Hh-------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA---FS------------- 146 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~---~~------------- 146 (312)
++.+++|.+..+.+++. +...++..+++++.|+++||+|||+.++.+.+...++..... +.
T Consensus 28 ~~~~~~g~s~~~~g~~~---~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (396)
T TIGR00882 28 WLHDVNGLSKTDTGIVF---SCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIV 104 (396)
T ss_pred HHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55677999999999999 999999999999999999999999998876544433221110 00
Q ss_pred --------cc-----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 147 --------KQ-----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT---VVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 147 --------~~-----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
.. ...+..+.. +.++...+.......+|..+++.++. ..+|++.|++.+++.++..+..+.
T Consensus 105 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 105 GGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 00 111222221 22233344444444555555555542 348999999888777766544443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=108.52 Aligned_cols=131 Identities=12% Similarity=0.001 Sum_probs=81.5
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChh----HHHHHHHHHHHHHHHHHHHhcc--
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQR----CAMRLSDLFCILGWLAIAFSKQ-- 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk----~~~~~~~~~~~~~~~~~~~~~~-- 148 (312)
+...+.+|.+.+++|.+..+.|++. +++.++..+++++.|+++||+||| +.+.++..+..+ ......++
T Consensus 21 g~~~p~l~~~l~~~g~s~~~iG~~~---~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 95 (382)
T PRK11128 21 GVFLPFWSVWLKGQGYTPETIGLLL---GAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV--AFWFGAHSFW 95 (382)
T ss_pred HHHhhhHHHHHHhcCCCHHHHHHHH---HHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH--HHHHhcccHH
Confidence 4456677777788999999999999 999999999999999999999983 333222221111 11111122
Q ss_pred -------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 048699 149 -------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 -------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~ 205 (312)
...++.++ .++|++..+.......+|..+++.++ ..++||..|++.++..++..+
T Consensus 96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 96 LLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 11233333 34456655555555555555555554 667999999877765444443
Q ss_pred HhhcccC
Q 048699 206 GLFFIPE 212 (312)
Q Consensus 206 ~~~~~pe 212 (312)
..++.||
T Consensus 174 ~~~~~~~ 180 (382)
T PRK11128 174 GQLLRPT 180 (382)
T ss_pred HHHccCC
Confidence 3333343
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-11 Score=111.85 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=100.3
Q ss_pred cccccc--cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh-cChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 82 SGITAD--LGLSVREDLLIEASLLLMTIGAISGSLINGKIADL-TGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
.++.++ +|++..+.+++. +.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++
T Consensus 35 ~yl~~~~~lg~s~~~ag~~~---~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 111 (475)
T TIGR00924 35 VYLVQQAGLGFSQEQAFIIF---GAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGT 111 (475)
T ss_pred HHHHhCCCCCCCHHHHHHHH---HHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 355555 899999999999 99999999999999999999 89999999999999998888777654
Q ss_pred -----------cceeeeecCCCCc---hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 -----------IPIYITEIAPKNV---RGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
...++++++|++. |+.+.++...+.++|.++++.++ ...+|++.|.+.++..+++.+.++
T Consensus 112 ~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~ 189 (475)
T TIGR00924 112 IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFF 189 (475)
T ss_pred HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 2356678887654 88888988888888888887776 445899999987765555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=122.66 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=89.7
Q ss_pred cccccccCCccc--chhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHH---hcc--------
Q 048699 82 SGITADLGLSVR--EDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAF---SKQ-------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~---~~~-------- 148 (312)
+.+..+++.+.+ ..+++. +++.++.+++++++|+++||+|||++++++.++.+++.++..+ ..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 110 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVN---ALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT 110 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHH---HHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 344445555432 346666 9999999999999999999999999998887655544443322 222
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-------------HHHHHHHHHHH-HHH
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-------------SCLVLALIAAV-PCL 201 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------------~w~~~~~~~~~-~~~ 201 (312)
...++.|++|+++|++++++...+..+|.++++.++..+ +|++.+.+..+ ..+
T Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1146)
T PRK08633 111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV 190 (1146)
T ss_pred HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence 346889999999999999999999888888887776322 23444433333 333
Q ss_pred HHHHHhhcccCChH
Q 048699 202 LQVVGLFFIPEIAQ 215 (312)
Q Consensus 202 ~~~~~~~~~pes~~ 215 (312)
+.++..+.+|++|.
T Consensus 191 ~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 191 LGLIFAYRLPKVPA 204 (1146)
T ss_pred HHHHHHhcCcCCCC
Confidence 34444556677654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-10 Score=103.22 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=84.9
Q ss_pred ccccccccCCcccchhHHHHHHHHHHH-HHHHHHHhHHhhhhhcChhHHHH-HHHHHHHHHHHHHHHhcc----------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTI-GAISGSLINGKIADLTGQRCAMR-LSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~Grk~~~~-~~~~~~~~~~~~~~~~~~---------- 148 (312)
.+++.+++|++.++.|++. +...+ +..++.+++++ +||+|||+.++ .+.++..++..+.+++++
T Consensus 39 ~~~l~~~~~~s~~~~g~~~---~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (393)
T PRK15011 39 SIFLTDEVHARPAMVGFFF---TGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVF 114 (393)
T ss_pred HHHHHhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3357888999999999986 66544 66666666666 99999998754 445554455555555444
Q ss_pred -----------cceeeeecCCCCch--hHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH-hhcc
Q 048699 149 -----------IPIYITEIAPKNVR--GAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG-LFFI 210 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~-~~~~ 210 (312)
...++.++.+++.| +...+..+.+..+|.++++.++ ..+|||..|++.++.+++..+. .+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 194 (393)
T PRK15011 115 LSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFL 194 (393)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhc
Confidence 22344555555544 2334666667777777776665 5669999999888776665443 4456
Q ss_pred cCCh
Q 048699 211 PEIA 214 (312)
Q Consensus 211 pes~ 214 (312)
||.+
T Consensus 195 ~~~~ 198 (393)
T PRK15011 195 PSMR 198 (393)
T ss_pred CccC
Confidence 7653
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-11 Score=109.55 Aligned_cols=124 Identities=16% Similarity=0.090 Sum_probs=97.9
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHHHHHHHhc---c--------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGWLAIAFSK---Q-------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~---~-------- 148 (312)
..++.+++|++..+.+.+. +.+.....++++++|+++||+ |||++++++.++..++.++++... .
T Consensus 33 ~~yL~~~lgls~~~a~~i~---~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l 109 (493)
T PRK15462 33 ILYLTNQLKYDDNHAYELF---SAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI 109 (493)
T ss_pred HHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3456777899999999998 999999999999999999999 999999999888877765554321 1
Q ss_pred -----------cceeeeecCCCC--chhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -----------IPIYITEIAPKN--VRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -----------~~~~i~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
...+++|.+|++ +|.++.++...+.++|+.++|.+. ...+|++.|.+.++..+++++.+
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 346779999875 788899988888888888888776 34589999988766554444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=104.92 Aligned_cols=151 Identities=11% Similarity=-0.057 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhH-HhhhhhcChhHHH
Q 048699 51 LVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLIN-GKIADLTGQRCAM 129 (312)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~-g~l~dr~Grk~~~ 129 (312)
+.+...++..|. ..+...+.+|.+.++.|.+.++.|... ..+...+...+.+++. ++..||+|||+.+
T Consensus 4 ~~~~~ly~~~g~----------~~~~~~p~lp~~l~~~g~~~~~iGl~~-~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~ 72 (390)
T TIGR02718 4 ITLGLLYLSQGI----------PIGLAMDALPTLLREDGAPLTALAFLP-LVGLPWVVKFLWAPLVDNWWSWRLGRRRSW 72 (390)
T ss_pred HHHHHHHHHHHh----------HHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccccccCCcchhH
Confidence 344555677788 777778889999999999999999863 1155677777777777 5579999999886
Q ss_pred HHHHHHHHH-HHHHHHH---hcc----------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHH-
Q 048699 130 RLSDLFCIL-GWLAIAF---SKQ----------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYL- 182 (312)
Q Consensus 130 ~~~~~~~~~-~~~~~~~---~~~----------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~- 182 (312)
++++.+... .....+. ..+ .-.+..|..+++.++...+....+..+|.+++..
T Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~ 152 (390)
T TIGR02718 73 VLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG 152 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 554422211 1111110 111 1123456666677677777777777777777764
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 048699 183 ---VGTVVSCLVLALIAAVPCLLQVVGLFFIPE 212 (312)
Q Consensus 183 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~~pe 212 (312)
+...++||..|++.+++.++..+..++++|
T Consensus 153 ~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 153 TLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346679999999988887766555544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=106.61 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=92.7
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh-cChhHHHHHHHHHHHHHHHHHHHhcc---------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL-TGQRCAMRLSDLFCILGWLAIAFSKQ--------- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~~--------- 148 (312)
....++.+++|++.++.++.. +.+........+++|+++|| +|||++++++.++..++.++++++.+
T Consensus 43 ~l~~yl~~~lg~s~~~a~~~~---~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~ 119 (500)
T PRK09584 43 IMAVYLVKQLGMSEADSITLF---SSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM 119 (500)
T ss_pred HHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 345567788999988888777 77666666666789999999 59999999999999888888777532
Q ss_pred -------------cceeeeecCCCCc--hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHH
Q 048699 149 -------------IPIYITEIAPKNV--RGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQV 204 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~ 204 (312)
...++.|++|++. |..+.++++++.++|..+++.++ +..+||+.|++.++..++..
T Consensus 120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 2356788887643 44567777788888888777665 45689999998776544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=111.68 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCc
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNV 161 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~ 161 (312)
.+..++.++|.+++|+++||+|||++++++.++.+++.++.++.++ ...+++|++|++.
T Consensus 602 ~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~ 681 (742)
T TIGR01299 602 FLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDK 681 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 6777999999999999999999999999999888888777666554 4567899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhcccCCh
Q 048699 162 RGAYTATNQLLVASGLSVTYLVGTVV---SCLVLALIAAVPCLLQVVGLFFIPEIA 214 (312)
Q Consensus 162 r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pes~ 214 (312)
|++++++.+....+|.+++|.++..+ +...+|++.+++.+++.++.+++||+.
T Consensus 682 Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 682 RATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999887432 345677777777777666667779874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=101.32 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=93.3
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------- 148 (312)
.++++++|++..+.+++. +...++.+++.+++|+++||+|||+.+..+.+...+........++
T Consensus 241 ~~l~~~~~~~~~~~g~~~---~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 241 LFIINELHLPEKLAGVMM---GTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356677899988888887 7777888889999999999999999887765554443333332322
Q ss_pred --------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 048699 149 --------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFFIPE 212 (312)
Q Consensus 149 --------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~pe 212 (312)
.+.+..|..|+ +|+++.++++....+|..+++.++ +.++|+..+++.+++.++.++..+++||
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 22455788875 589999988777777777776655 5568999999888888777777766654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=116.55 Aligned_cols=117 Identities=11% Similarity=0.030 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHH---HHHHHHHHHHHHHHhcc---------------------cc
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRL---SDLFCILGWLAIAFSKQ---------------------IP 150 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~---~~~~~~~~~~~~~~~~~---------------------~~ 150 (312)
.++.. +++.+..+++++++|+++||+|||+++.. +.++..+..+......+ ..
T Consensus 54 ~~l~~---~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 54 VTLAG---AVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHH---HHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 45556 89999999999999999999999997533 21222222122212222 44
Q ss_pred eeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhhcccCCh
Q 048699 151 IYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT----VVSCLVLALIAAVPCLLQVVGLFFIPEIA 214 (312)
Q Consensus 151 ~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~~~~pes~ 214 (312)
+++.+++++++|+.++++.+++..+|.++|+.++. ..+|++.|++.++..+++++..+++|+++
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 67899999999999999999999999988888773 44899988555555555555556666543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=102.06 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=95.0
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (312)
.+.++++.+..+.++.. +...++..++.++.|++.||+|||+.+.++.++..++.++..+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 230 PYGQSLGLSDGFLVLAV---SISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 34566788887888888 9999999999999999999999999988887777666655544331
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHH
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQV 204 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~ 204 (312)
.+.++.|.+|+++|++..++.+....+|..+++.+. +..+|++.|.+.+++.+++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 345678999999999999999998888888887765 45689999988777666543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.2e-12 Score=116.23 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
..++....+..+++.|+++.++.|++. +.+-++.++..++..++.+|..|-+.+-+|.++.+++++++++-+-
T Consensus 18 ~~g~~~~~lttiErRF~l~S~~~G~i~---s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 18 VSGYVNSSLTTIERRFGLSSSQSGLIS---SSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 556677788899999999999999999 9999999999999999999988888888999999999988765321
Q ss_pred -------------------------------------------------------------------cceeeeecCCCCc
Q 048699 149 -------------------------------------------------------------------IPIYITEIAPKNV 161 (312)
Q Consensus 149 -------------------------------------------------------------------~~~~i~e~~~~~~ 161 (312)
..+|+-|..+++.
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 5679999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh-------------------------H-HHHHHHHHHHHHHHHHHHHhhcccCChH
Q 048699 162 RGAYTATNQLLVASGLSVTYLVGTV-------------------------V-SCLVLALIAAVPCLLQVVGLFFIPEIAQ 215 (312)
Q Consensus 162 r~~~~~~~~~~~~~g~~~~~~~~~~-------------------------~-~w~~~~~~~~~~~~~~~~~~~~~pes~~ 215 (312)
-+...|+......+|..+|.+++.. . .|+.-|++.+++.++..+.++++|+..+
T Consensus 175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 175 SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 9999999988888888888766511 1 3777788888777777777777776421
Q ss_pred hHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhc---cccchhHHHHHHHHHHHhhhhch
Q 048699 216 SIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLF---QRNYAYSLSVGVGLMVMQPLVGS 292 (312)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~ 292 (312)
.. ++..++.+...++.. + ..++ +.++. ++.+.....+++++ +....+++++...+.........
T Consensus 255 ~~-----~~~~~~~~~~~~~~~--~--~~~~--~~~~~--~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~ 321 (539)
T PF03137_consen 255 GT-----SERQEEKESSERKEE--D--SDKD--SFKDP--KSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIV 321 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cc-----ccccchhhhhhcchh--h--hhhh--ccccc--ccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 10 000011000000000 0 0000 00000 00000111222222 22344566666777777777788
Q ss_pred hHHHhcHHHHHHHc-CCCCC
Q 048699 293 AAIAYYASYIFAAA-GKFTT 311 (312)
Q Consensus 293 ~~~~~~~~~~~~~~-G~~~~ 311 (312)
.++..|.|.++|.. |++++
T Consensus 322 ~G~~tF~pKylE~QF~~sas 341 (539)
T PF03137_consen 322 SGFATFLPKYLESQFGLSAS 341 (539)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHhCCCHH
Confidence 89999999999864 77754
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-10 Score=102.03 Aligned_cols=133 Identities=17% Similarity=0.104 Sum_probs=98.2
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc--c--------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK--Q-------- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~--~-------- 148 (312)
+..|.+.++.|.+.....+.. ....++.+++.++.|+++||+|||+.++.+.++.+++.++.+... +
T Consensus 292 ~~~p~i~~~~g~~~~~~~~~~---~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 292 YYAPEIFKTLGASTDIALLQT---IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHcCCCCchHHHHH---HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 345677777888877777777 778888999999999999999999999988887777665543321 1
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----------TVVSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----------~~~~w~~~~~~~~~~~~~ 202 (312)
...++.|.+|+++|+++.++......+|.++++.+. +..+|++.|++.++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 235679999999999999999888877777664332 245677888877766555
Q ss_pred HHHHh-hcccCCh
Q 048699 203 QVVGL-FFIPEIA 214 (312)
Q Consensus 203 ~~~~~-~~~pes~ 214 (312)
+.+.. ++.||++
T Consensus 449 ~~~~~~~~~~e~~ 461 (479)
T PRK10077 449 AALFMWKFVPETK 461 (479)
T ss_pred HHHHHHhccccCC
Confidence 55444 4556653
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=87.47 Aligned_cols=110 Identities=21% Similarity=0.249 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCc
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNV 161 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~ 161 (312)
+.+.++..+++++.|++.||+|||+.+..+..+..++.+......+ ...++.|..|++.
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 5667888999999999999999999999988888877777666554 3456789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hcccC
Q 048699 162 RGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFIPE 212 (312)
Q Consensus 162 r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~pe 212 (312)
|++..++.+....+|..+++.+. +..+|++.+++.+++.++..+.. ++.||
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999988888888887766 34579999888777766655444 34444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=105.76 Aligned_cols=232 Identities=16% Similarity=0.153 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHH
Q 048699 51 LVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMR 130 (312)
Q Consensus 51 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~ 130 (312)
.+.++..+..++ ..+++...+..+.+.|+++.++.|++. +.+-++..+...+..+..-|.-|-+.+-
T Consensus 100 ~~l~~~~~~q~l----------~~~y~~s~IttiErRF~i~Ss~sG~I~---s~~dig~~l~i~fVsYfG~r~HrPr~Ig 166 (735)
T KOG3626|consen 100 VLLSLAAFAQGL----------YVGYFNSVITTIERRFKISSSQSGLIA---SSYDIGNLLLIIFVSYFGSRGHRPRWIG 166 (735)
T ss_pred HHHHHHHHHHHh----------hhhhhhhhhhhhhhhcCCCCCcceeEe---eecccchhhhhHhHHHhccccCccceee
Confidence 344555666677 667778889999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc--------------------------------------------------------------
Q 048699 131 LSDLFCILGWLAIAFSKQ-------------------------------------------------------------- 148 (312)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 148 (312)
+|+++++++++++++-+-
T Consensus 167 ~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l 246 (735)
T KOG3626|consen 167 IGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLL 246 (735)
T ss_pred echhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHH
Confidence 999999999999876422
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----------------------HHHHHHH
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-----------------------SCLVLAL 194 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~w~~~~~ 194 (312)
...|+-|...+++-+...++......+|.++|.+++... .|+.-|+
T Consensus 247 ~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL 326 (735)
T KOG3626|consen 247 LGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL 326 (735)
T ss_pred hhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence 567889999889889999999888888888887776211 4888899
Q ss_pred HHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccch
Q 048699 195 IAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYA 274 (312)
Q Consensus 195 ~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (312)
+.+.+.++..+.++++|...+.. .++.+++ ..+.. +.+.+..++.....+. -++=....+.+++
T Consensus 327 i~g~~~~~~a~p~f~fPk~lp~~------~~~~~~~-~~~~~-k~~~~~~~~~~~~~~~----ikdfp~s~~~ll~---- 390 (735)
T KOG3626|consen 327 ICGALLLFSAVPLFFFPKELPKS------QKRKRAR-DLHVL-KTESGGAKSDKTFGKK----IKDFPKSIKRLLS---- 390 (735)
T ss_pred HHHHHHHHHHHHHHhCcccCccc------cccchhh-hhccc-ccccccccCCcchhhh----HHHHHHHHHHHhc----
Confidence 99998888888888888764311 1110000 00000 0000000000000000 0000122333444
Q ss_pred hHHHHHHHHHHHhhhhchhHHHhcHHHHHHHc-CCCCC
Q 048699 275 YSLSVGVGLMVMQPLVGSAAIAYYASYIFAAA-GKFTT 311 (312)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~ 311 (312)
+++++++.+........+.++..|+|.++|+. |.+++
T Consensus 391 N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas 428 (735)
T KOG3626|consen 391 NPIFMLVVLASVIESLAITGYITFLPKYLETQFGISAS 428 (735)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHH
Confidence 46677777777777888999999999999964 88764
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.9e-10 Score=100.36 Aligned_cols=68 Identities=19% Similarity=0.002 Sum_probs=56.6
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh-hHHHHHHHHHHHHHHHHHHHhcc
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ-RCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr-k~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
++..+++.+++|++..+.|++. +...++.++++++.|.++||+|| |+++.++.++..++..+..+.++
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~---a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~ 91 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVY---SSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT 91 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556678888999999999999 99999999999999999999965 77878777777676666665544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-09 Score=93.00 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=104.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHh
Q 048699 39 DSVATPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGK 118 (312)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 118 (312)
..+..+++|++++.+++..+.+++ .....++...+...-|+ +.+..-|.+ -++.+.....++++-|
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~----------qWI~ya~i~n~~~~~Yg-s~~~~~wls---mIym~v~vp~gf~~mw 101 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGM----------QWIQYAPINNYVNSFYG-SSSAADWLS---MIYMVVSVPFGFAAMW 101 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcc----------hheeehhHHHHHHHHhc-chHHHHHHH---HHHHHHHHHHhhHHHH
Confidence 345678888888888888888888 55444555566677778 767777888 9999999999999999
Q ss_pred hhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------------------------cce-eeeecCCCCchhHHHHHH
Q 048699 119 IADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------------------------IPI-YITEIAPKNVRGAYTATN 169 (312)
Q Consensus 119 l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~-~i~e~~~~~~r~~~~~~~ 169 (312)
+.|++|-|...+++..+.++|+.+-..+.. .|. ...-|+++++|+.+..+.
T Consensus 102 ~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~ 181 (480)
T KOG2563|consen 102 ILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLG 181 (480)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHH
Confidence 999999999999999999999987655433 333 334578999999999988
Q ss_pred HHHHHHHHHHHHHhh
Q 048699 170 QLLVASGLSVTYLVG 184 (312)
Q Consensus 170 ~~~~~~g~~~~~~~~ 184 (312)
.++..+|..++.++.
T Consensus 182 v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 182 VMGNPLGVAVGFLLP 196 (480)
T ss_pred HhcchHHHHHHhhcc
Confidence 887777777776654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-10 Score=103.45 Aligned_cols=131 Identities=15% Similarity=0.052 Sum_probs=94.5
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh----cChhH-HHHHHHHHHHHHHHHHHHhcc------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL----TGQRC-AMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~Grk~-~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
..+++.+++|+++.+.|++. ++..+..++..++.|+++|| +|||| .++++.+..+++.+++...++
T Consensus 22 l~~~~~~~~g~s~~~~g~i~---~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLF---LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK 98 (437)
T ss_pred HHHHHHHccCCCHHHHHHHH---HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence 45567888999999999999 99999999999999999997 67754 566677777766666554432
Q ss_pred ---------------------cceeeeecC-CCCchhHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIA-PKNVRGAYTATNQLLVASGLSVTYLVG-----------TVVSCLVLALI 195 (312)
Q Consensus 149 ---------------------~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~-----------~~~~w~~~~~~ 195 (312)
..++..|.. ++++|++..++.+.+..+|.+++..+. ...+||+.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i 178 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 124556776 568899999888777777665543332 13479999988
Q ss_pred HHHHHHHHHHH-hhcccCC
Q 048699 196 AAVPCLLQVVG-LFFIPEI 213 (312)
Q Consensus 196 ~~~~~~~~~~~-~~~~pes 213 (312)
.++++++..+. .+..+|.
T Consensus 179 ~~~l~~~~~~~~~~~~~e~ 197 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKER 197 (437)
T ss_pred HHHHHHHHHHHHHcCCEec
Confidence 88776665544 3445553
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.6e-10 Score=100.97 Aligned_cols=126 Identities=18% Similarity=0.167 Sum_probs=94.9
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
.|.+.++.|.+..+.+... +...++.+++.++.|+++||+|||+.+..+.+...++.++....++
T Consensus 243 ~p~~~~~~g~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 243 LPSLLVGQGLSRSQAGLVQ---IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHhCCCChhhhhHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4555566899988999988 9999999999999999999999999888766655555544444333
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-----SCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...++.|.+|++.|++..++.+....+|..+++.+...+ +|...++......+++.+..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 335678899999999999999999999998888886433 4555666555555555444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=99.00 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=103.6
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh-----c--
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS-----K-- 147 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~-----~-- 147 (312)
.......|.+.+++|.+..+.++.. ....++..++.++.|+++||+|||+.+.++.++.+++.++.++. .
T Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTDHAFLVS---IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS 377 (481)
T ss_pred eehHHHHHHHHHHcCCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 3344556777778898888888888 88999999999999999999999999888777666655444310 0
Q ss_pred ----c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHH
Q 048699 148 ----Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAV 198 (312)
Q Consensus 148 ----~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~ 198 (312)
+ ...++.|.+|++.|+++.++.++...+|.++++.+. ...+|++.|++.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~ 457 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG 457 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHH
Confidence 1 234568999999999999999999999988887765 34478888888877
Q ss_pred HHHHHHHHh-hcccCCh
Q 048699 199 PCLLQVVGL-FFIPEIA 214 (312)
Q Consensus 199 ~~~~~~~~~-~~~pes~ 214 (312)
++++..+.. ++.||++
T Consensus 458 ~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 458 LNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHheecccCC
Confidence 776665544 4556543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=98.72 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL 122 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr 122 (312)
.|+...+.+++..+..+.|. ..+......+-.+.|++..+..++. ....+...+.++++.++.||
T Consensus 267 lR~~~~i~~~v~~~qq~sGi------------~ai~~Yst~i~~~aG~~~~~a~~an---~~~g~v~~~~t~~~~~lid~ 331 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGI------------NAIFFYSTSIFKTAGFTPEEAQYAN---LGIGIVNLLSTLVSPFLIDR 331 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCc------------ceeHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666666 3344445566677899999999999 99999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcc-------------------------------cceeeeecCCCCchhHHHHHHHH
Q 048699 123 TGQRCAMRLSDLFCILGWLAIAFSKQ-------------------------------IPIYITEIAPKNVRGAYTATNQL 171 (312)
Q Consensus 123 ~Grk~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~i~e~~~~~~r~~~~~~~~~ 171 (312)
+|||+.++.+..+..+..+++..... ...+.+|++|++.|+.+.+...+
T Consensus 332 ~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~ 411 (485)
T KOG0569|consen 332 LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATA 411 (485)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHH
Confidence 99999999998887776665543221 33467999999999999998877
Q ss_pred HHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHH-HHHhhcccCCh
Q 048699 172 LVASGLSVT----YLVGTVVSCLVLALIAAVPCLLQ-VVGLFFIPEIA 214 (312)
Q Consensus 172 ~~~~g~~~~----~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~pes~ 214 (312)
...+..++. +.+...+|- +.|++..+++++. +..+.++|||+
T Consensus 412 ~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 412 VNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 665555443 333344554 5555555555544 45567899985
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=100.29 Aligned_cols=135 Identities=15% Similarity=0.154 Sum_probs=89.0
Q ss_pred CccccccccCCcccchhHH--------HH-HHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc---
Q 048699 80 AESGITADLGLSVREDLLI--------EA-SLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK--- 147 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~--- 147 (312)
..|.+.++.|.+..+.+.. .. ...+..++..++.++.++++||+|||++++++.++.+++.++.++..
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566656677765432211 00 01344556677889999999999999998877665554433322210
Q ss_pred --c--------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHH
Q 048699 148 --Q--------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV--------------VSCLV 191 (312)
Q Consensus 148 --~--------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--------------~~w~~ 191 (312)
+ ...+..|.+|++.|+++.++.+....+|.++++.+... .++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 0 23566999999999999999999888888888766421 23355
Q ss_pred HHHHHHHHHHHHHHHhhcccCCh
Q 048699 192 LALIAAVPCLLQVVGLFFIPEIA 214 (312)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~pes~ 214 (312)
.+++.++++++..+..+++||++
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 66776666666655567779874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=99.82 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=89.4
Q ss_pred CCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH--Hhcc-------
Q 048699 79 PAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA--FSKQ------- 148 (312)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~--~~~~------- 148 (312)
...| ++++++|++..+.++.. +...++..++.+++|+++||+|||+.+.....+..++..+.. ...+
T Consensus 279 ~~~p~yl~~~~g~s~~~a~~~~---~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T PRK09556 279 NWSPVYAFQELGFSKEDAINTF---TLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLAS 355 (467)
T ss_pred HHHHHHHHHccCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444 66778999999999888 999999999999999999999998876654333332221111 1111
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHH-HHHHHHHhh----h------------hHHHHHHHHHHH
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVAS-GLSVTYLVG----T------------VVSCLVLALIAA 197 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~----~------------~~~w~~~~~~~~ 197 (312)
......|..|++.||++.++.+....+ |..+++.+. + ..+|+..|++..
T Consensus 356 ~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~ 435 (467)
T PRK09556 356 LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD 435 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence 124557999999999999999877775 545554443 3 346999998877
Q ss_pred HHHHHHHHHhh
Q 048699 198 VPCLLQVVGLF 208 (312)
Q Consensus 198 ~~~~~~~~~~~ 208 (312)
+..+++.+..+
T Consensus 436 ~~~~~~~~~~~ 446 (467)
T PRK09556 436 IAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHH
Confidence 77666655444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-10 Score=104.85 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=86.1
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (312)
++++++|.+..+.+++. +...++.+++.+++|+++||+|||+++.++.++..++.++.....+
T Consensus 301 ~l~~~~g~~~~~~g~~~---~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (496)
T PRK03893 301 YLKTDLGYDPHTVANVL---FFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQ 377 (496)
T ss_pred HHHhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 44468899999999999 9999999999999999999999999888776655444332221111
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVP 199 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~ 199 (312)
.+.++.|.+|++.|++.+++......+|..+++.+. +.++|+..+.+.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 345678999999999999998887778777777665 455788777554433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=97.16 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=88.3
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHH---hcc---------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAF---SKQ--------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~---~~~--------- 148 (312)
.+++.+++|.+......+. ....+...++.++.|+++||+|||+.+..+.++..++.+.... ..+
T Consensus 274 ~~y~~~~~g~s~~~~~~~~---~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T PRK09952 274 LNYSTQNLGLPRELFLNIG---LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSI 350 (438)
T ss_pred HHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3355667787766555555 5666777888999999999999999888776554433221111 001
Q ss_pred -------------cceeeeecCCCCchhHHHHHH-HHHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHhh
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATN-QLLVASGLSVTYLVGTVV------SCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~ 208 (312)
.+.++.|.+|++.|+++.++. +.+..+|+.++|.+.... +|+..+.+.++++++..+..+
T Consensus 351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 345778999999999888875 444557777777665221 478888877777777766666
Q ss_pred cccCCh
Q 048699 209 FIPEIA 214 (312)
Q Consensus 209 ~~pes~ 214 (312)
.++|+.
T Consensus 431 ~~~~~~ 436 (438)
T PRK09952 431 LMKDNQ 436 (438)
T ss_pred Hccccc
Confidence 666643
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=94.62 Aligned_cols=124 Identities=27% Similarity=0.341 Sum_probs=103.4
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhH-HHHHHHHHHHHHHHHHHHhcc-------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRC-AMRLSDLFCILGWLAIAFSKQ------------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~-~~~~~~~~~~~~~~~~~~~~~------------- 148 (312)
...+.+|.+..+.++.. +...++..++.++.+++.||+|||+ .+..+.++..++.+.....++
T Consensus 201 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 277 (352)
T cd06174 201 YLQEVLGLSAAEAGLLL---SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGF 277 (352)
T ss_pred HHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444588888999999 9999999999999999999999999 888888888888877776654
Q ss_pred --------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 --------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT----VVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 --------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...++.|..|+++|++..++.+....+|..+++.+.. ..+|+..+++.+++.++..+..++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 4567789999999999999999999988888877763 458999999988888777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=90.96 Aligned_cols=126 Identities=21% Similarity=0.156 Sum_probs=91.9
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------- 148 (312)
.++.+++|.+..+.++.. +.......++.++.|++.||+|||+.+.++.++..+..+.....++
T Consensus 224 ~~~~~~~g~~~~~~g~~~---~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 300 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMM---GTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAI 300 (375)
T ss_pred HHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899888888877 7777777888999999999999999888776655444433333322
Q ss_pred --------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhccc
Q 048699 149 --------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFFIP 211 (312)
Q Consensus 149 --------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~p 211 (312)
...++.|..|+ +++++.++++....+|..+++.+. +..+|+..+++.+++.+++.+...+++
T Consensus 301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 23456777765 567899988887778887777665 445899999988888777776665544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=94.08 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=104.1
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------------------
Q 048699 88 LGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------------- 148 (312)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------------- 148 (312)
.+-+.++.|++. +...+.+.+..++.|.+.||+|+|..+++|.+++..++++.++..+
T Consensus 101 ~~~e~~~iG~LF---askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 101 LDRENTQIGLLF---ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccccccchhHHH---HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 455677788888 9999999999999999999999999999999999999999998877
Q ss_pred --cceeeeecCCCCc-hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 048699 149 --IPIYITEIAPKNV-RGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFFI 210 (312)
Q Consensus 149 --~~~~i~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (312)
...++++.+|.+. |++++|+...+.++|.++||.++ +..|.+.+|++.++++++-..+.+++
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 4567788888765 79999999999999999998887 44589999999999888877666554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.6e-10 Score=100.81 Aligned_cols=116 Identities=13% Similarity=-0.001 Sum_probs=87.1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------------
Q 048699 89 GLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------------- 148 (312)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------------- 148 (312)
+.+..+.+++. ++..++..++.+++|++.||+|||+.+.++.++.+++.++.++.++
T Consensus 258 ~~~~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 258 EQGTRVFGYLN---SFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred CcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 45556677878 8889999999999999999999999998888888877777766655
Q ss_pred -cceeeeecCCCCchhHHHHH-HHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -IPIYITEIAPKNVRGAYTAT-NQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -~~~~i~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
...++.|..|++.|++..+. +++...+|..+++.+. +..||+..|.+.+++.++..+..
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 22456788899998877654 4555666666665554 55689999998777765554433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=94.17 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------------------cceeeeecCCC
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-----------------------IPIYITEIAPK 159 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~i~e~~~~ 159 (312)
....+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++ ...+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 5566777889999999999999999999888887777666555432 45677999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhhcccCCh
Q 048699 160 NVRGAYTATNQLLVASGLSVTYLVGT--VVSCLVLALIAAVPCLLQVVGLFFIPEIA 214 (312)
Q Consensus 160 ~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~pes~ 214 (312)
+.|++++++.++...+|.+++|.+.. ..++...+++.++..+++.+..+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999988875 23456677777777777766677888864
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.4e-09 Score=94.26 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=89.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc----c--------------------
Q 048699 93 REDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK----Q-------------------- 148 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~----~-------------------- 148 (312)
+..+... ++..++.+++.++.|+++||+|||+++.++.++.+++..+..... +
T Consensus 251 ~~~g~~~---~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 251 KNASIWM---SLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777 899999999999999999999999999998887777654443311 0
Q ss_pred -cceeeeecCCCCchhHHHHHHH-HHHHHHHHHHHHhh----hh------HHHHHHHHHHHHHHHHHHH-HhhcccCC
Q 048699 149 -IPIYITEIAPKNVRGAYTATNQ-LLVASGLSVTYLVG----TV------VSCLVLALIAAVPCLLQVV-GLFFIPEI 213 (312)
Q Consensus 149 -~~~~i~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~----~~------~~w~~~~~~~~~~~~~~~~-~~~~~pes 213 (312)
...++.|.+|++.|++..++.+ ....+|..+|+.++ +. ++|+..|.+.+++.+++.+ ..++++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3456799999999999999996 56777887777776 33 3599999887777655544 34556665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=95.03 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=86.7
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhH--H------HHHHHHHHHHHHHHHHHhcc-----
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRC--A------MRLSDLFCILGWLAIAFSKQ----- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~--~------~~~~~~~~~~~~~~~~~~~~----- 148 (312)
.++.+.+|.+..+.++.. +...++..++.++.|+++||+|||+ . ...+.++..+........++
T Consensus 240 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (399)
T TIGR00893 240 TYLVQERGLSILEAGFMA---SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAAL 316 (399)
T ss_pred HHHHHHhcccHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 355667888888889888 9999999999999999999999995 1 11111111111110000001
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHH-HHHHHHHHHHHHHHHHHHh
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVS-CLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~-w~~~~~~~~~~~~~~~~~~ 207 (312)
...++.|..|++.|+++.++.+....+|..+++.+. +..+ |+..+++.+++.++..+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 317 ALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999998888888887776 3346 8888888777766655544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=91.78 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=87.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------ccee
Q 048699 94 EDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIY 152 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 152 (312)
+.++.. +.+.++..++.++.|++.||+|+|+.+..+.++.+++.++....++ ....
T Consensus 250 ~~~~~~---~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 326 (399)
T PRK05122 250 GAALAL---TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVE 326 (399)
T ss_pred cchHHH---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445666 7888899999999999999999999988887777776666555544 1234
Q ss_pred eeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 048699 153 ITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFFIPE 212 (312)
Q Consensus 153 i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~pe 212 (312)
+.|..|++.|+++.++++....+|..+++.+. +..+|+..+++.+++.+++.+..+++++
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788999999999999888877776655443 4558999999888777776665554433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-09 Score=90.12 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCc
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNV 161 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~ 161 (312)
....+...-|.++.+++.||+|||+.+..+.+++++..++...+.+ .++|..|++|...
T Consensus 388 litslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence 3456777889999999999999999999999999998888776655 7789999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHhhcccC
Q 048699 162 RGAYTATNQLLVASGLSVTYLVGTVV--SCLVLALIAAVPCLLQVVGLFFIPE 212 (312)
Q Consensus 162 r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~pe 212 (312)
|+++.|.......+|+++.|+++-.. .-..+..+.+.+++++.+...++|-
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999988332 2334555566666666666666663
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=89.95 Aligned_cols=127 Identities=9% Similarity=-0.009 Sum_probs=91.6
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
.+++++.+|++..+.++.. +.+.++..+|.++.|+++||+|||+.+.....+..+...+....++
T Consensus 229 p~~l~~~~g~s~~~~~~~~---~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 229 PEYAQKKFGMSLEDAGNLV---SNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHcCCChHHhhHHH---HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3455577899999999999 9999999999999999999999999888777666655554444433
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhccc
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFFIP 211 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~p 211 (312)
...+..|..| +.++...+....+..+|..++|.+. +..+|+..+++.+++.+++.+.....+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 1223345444 4456777777777778887777665 456888888887777666655554443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=90.54 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=90.8
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
+|.+.++.|.+.++.++.. +...++.+++.++.|+++||+|+|+.+..+..+..++.+.......
T Consensus 223 lp~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 299 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWM---ALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAG 299 (381)
T ss_pred HHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4545556788888888888 8999999999999999999999999887766665554432210000
Q ss_pred ------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 ------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
...++.|..|+++++...+..+....+|..++|.++ +..+|++.|.+.+.+.++..+..+
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 334567888888888777777777788888887765 455889988887777666554443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=91.90 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=82.5
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--ChhHHHH-HHHHHHHHHHHHHHHh--cc-------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT--GQRCAMR-LSDLFCILGWLAIAFS--KQ------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--Grk~~~~-~~~~~~~~~~~~~~~~--~~------- 148 (312)
..+++++.|.+..+.++.. ..+.++..++.+++|+++||+ |||.... ....+..++.++..+. .+
T Consensus 277 P~~l~~~~g~s~~~~~~~~---~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 353 (452)
T PRK11273 277 PTYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC 353 (452)
T ss_pred HHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 3456666888888888888 888999999999999999999 5554322 1112212211111110 00
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHH-HHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSV-TYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
...++.|.+|++.||++.++.+....+|+.+ ++.+. +..+|+..|++.++.++++.+...
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 1234578999999999999987766665433 45443 566899999888777776655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=89.94 Aligned_cols=128 Identities=15% Similarity=0.104 Sum_probs=93.2
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (312)
+..+.+|.+..+.+++. +...++..++.++.+++.||.++++.+..+.++..++.++..+.++
T Consensus 249 ~~~~~~g~~~~~~g~~~---~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (417)
T PRK10489 249 LADEVWQMGAAQIGLLY---AAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYL 325 (417)
T ss_pred HHHhccCCChhHhHHHH---HHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 44444899988999998 9999999999999999999988887777777666666655544443
Q ss_pred -------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH-HHHHHHhhcccCC
Q 048699 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPC-LLQVVGLFFIPEI 213 (312)
Q Consensus 149 -------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~-~~~~~~~~~~pes 213 (312)
...++.|..|++.||+..+++.....+|..+++.+. +..+++..+++.+++. ++..+....+++.
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 326 SAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 235678899999999999998877777777766665 4556777776655443 3344444555554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-08 Score=89.61 Aligned_cols=112 Identities=14% Similarity=0.106 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------ccee
Q 048699 94 EDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIY 152 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 152 (312)
+.++.. ..+.++.+++.++.|++.||+|+|+.+..+..+.+++.++..+.++ ....
T Consensus 250 ~~~~~~---~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 326 (392)
T PRK12382 250 MAGFTL---TAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVE 326 (392)
T ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555 7778888999999999999999999988888777777666655544 2234
Q ss_pred eeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 153 ITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 153 i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
+.|..|+++||+..++++....+|..+++.+. +..+|+..|.+.+++.++..+..+
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 327 VVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999888888877777665 556899999988877776655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=88.84 Aligned_cols=121 Identities=24% Similarity=0.211 Sum_probs=88.9
Q ss_pred cccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh---cc------------
Q 048699 84 ITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS---KQ------------ 148 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~---~~------------ 148 (312)
+..+..-|+...+++. .+..+-.++.++++|.++||+.||++++.+-++..+..++.++. ..
T Consensus 36 lv~~lt~S~~~valv~---~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl 112 (524)
T PF05977_consen 36 LVTQLTGSPLMVALVQ---AASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFL 112 (524)
T ss_pred HHHHHhCCHHHHHHHH---HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3334445666677777 99999999999999999999999999999887766544433322 11
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
-.+++.|+.|+++...++++.++..+++.++||.++ ..+|-.+.|++.++..++.++..
T Consensus 113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999998888877777777666 44577778877766555544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-08 Score=87.14 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=91.5
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
.|.+..++|.+..+.+... +.+.++.++|.++.|++.||+|||+.+..+..+..++.++....+.
T Consensus 228 lp~~l~~~g~s~~~ag~~~---~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~ 304 (393)
T PRK09705 228 LPAFYIEIGASAQYSGSLL---ALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGL 304 (393)
T ss_pred HHHHHHHcCCChhhhhHHH---HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 3433445899999999999 9999999999999999999999999888877666665554332121
Q ss_pred --------cceeeeecC-CCCchhHHHHHHHHHHHHHHHHHHHhh----hhH-HHHHHHHHHHHHHHHHHHH-hhcccCC
Q 048699 149 --------IPIYITEIA-PKNVRGAYTATNQLLVASGLSVTYLVG----TVV-SCLVLALIAAVPCLLQVVG-LFFIPEI 213 (312)
Q Consensus 149 --------~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~-~w~~~~~~~~~~~~~~~~~-~~~~pes 213 (312)
......+.. |++.|++..++.+....++..++|.+. +.. +|...+.+.++.+++..+. ..+.||+
T Consensus 305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 112334445 457889999988887777777777665 333 3677777766666555443 4556665
Q ss_pred h
Q 048699 214 A 214 (312)
Q Consensus 214 ~ 214 (312)
+
T Consensus 385 ~ 385 (393)
T PRK09705 385 F 385 (393)
T ss_pred c
Confidence 4
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=91.00 Aligned_cols=127 Identities=12% Similarity=0.037 Sum_probs=80.3
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH--H--hcc---------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA--F--SKQ--------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~--~--~~~--------- 148 (312)
+++.+.+|.+..+.+... ++..++..+++++.|+++||+|||+.+.++.++..+..+... . ..+
T Consensus 268 ~~l~~~~g~s~~~~~~~~---~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T PRK10406 268 KYLVNTAGMHANVASGIM---TAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM 344 (432)
T ss_pred HHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 345667888888888877 888888889999999999999999887765443322211110 0 000
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHHH-HHHHHHHHhhhh---HH-HHHHHHHHHHHHHHHHHHhhccc
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLVA-SGLSVTYLVGTV---VS-CLVLALIAAVPCLLQVVGLFFIP 211 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~---~~-w~~~~~~~~~~~~~~~~~~~~~p 211 (312)
...+++|.+|++.|+++.++.+.... +++...+.+... .+ |...+++.++..++..+..++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 33567899999999999998765433 222234443322 23 55555656566666555544443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.5e-08 Score=86.36 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=100.0
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
..+++.-|.+++..|++.+..+++. ..+.++..+|..+.|+++|| +.|+.+.....+..+..+...+..+
T Consensus 229 ~~ftYi~P~L~~v~g~s~~~vs~~L---l~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~ 304 (394)
T COG2814 229 ALYTYIRPFLESVAGFSVSAVSLVL---LAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304 (394)
T ss_pred hhHHhHHHHHHHccCCCHhHHHHHH---HHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3346778899999999999999999 99999999999999999999 8888888887777766666555444
Q ss_pred -------------cceeeeec--CCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 -------------IPIYITEI--APKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 -------------~~~~i~e~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
.+.+..+. ..++.+..+.+++...+++|..+|..++ +.+++....++.+++.+++++..+.
T Consensus 305 ~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 305 ALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 22233333 3367888888888776666666655554 6678999999998888877765543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-07 Score=83.29 Aligned_cols=139 Identities=19% Similarity=0.151 Sum_probs=100.1
Q ss_pred eeeeeCCC-cccccc-ccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh-hHHHHHHHHHHHHHHHHHH-Hhc-
Q 048699 73 QIGYSSPA-ESGITA-DLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ-RCAMRLSDLFCILGWLAIA-FSK- 147 (312)
Q Consensus 73 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr-k~~~~~~~~~~~~~~~~~~-~~~- 147 (312)
...+..+. -|++++ |.+-+.+..|++. ++..+|.+++++.+|+...|.|. |+.++.+.++..+|.++.. +..
T Consensus 49 ~~sI~~~s~wpYl~~lD~~A~~~ffG~vi---aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~ 125 (488)
T KOG2325|consen 49 QFSIYLTSMWPYLQKLDPTATATFFGLVI---AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV 125 (488)
T ss_pred hheEEEeecchhhhhcCCCCCcchhhHHH---HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44444433 344443 3566677789999 99999999999999999999996 7788899999999988873 221
Q ss_pred -c----------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----------------
Q 048699 148 -Q----------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV----------------- 187 (312)
Q Consensus 148 -~----------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------------- 187 (312)
+ .-.|+++....+.|.++.+....+..+|.++||.++..+
T Consensus 126 ~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n 205 (488)
T KOG2325|consen 126 PNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFN 205 (488)
T ss_pred ccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEE
Confidence 1 235788888889999999999888888888888776332
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcccCCh
Q 048699 188 SCLVLALIAAVPCLLQVVGL-FFIPEIA 214 (312)
Q Consensus 188 ~w~~~~~~~~~~~~~~~~~~-~~~pes~ 214 (312)
-+..+-++.+++.++..+.. +++.|.+
T Consensus 206 ~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 206 MYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred ecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 13345666666666655443 4556654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=93.90 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=86.8
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhH-------HHHHHHHHHHHHHHHHHHhcc-----
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRC-------AMRLSDLFCILGWLAIAFSKQ----- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~-------~~~~~~~~~~~~~~~~~~~~~----- 148 (312)
.+++.+++|++..+.+.+. ++..++..++.+++|+++||+|||+ ...+..++.++..++.....+
T Consensus 276 p~~l~~~~g~s~~~a~~~~---~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 352 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIA---ASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI 352 (476)
T ss_pred HHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 3455677899999999888 9999999999999999999998762 222222222222121111111
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT---VVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...++.+.. ++.||...++.+.+..+|+.+++.+.. ..+|+..|++.+++.+++.++.++
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 223445544 578999999998888888888877653 236899998888777777666655
Q ss_pred cc
Q 048699 210 IP 211 (312)
Q Consensus 210 ~p 211 (312)
++
T Consensus 432 ~~ 433 (476)
T PLN00028 432 IH 433 (476)
T ss_pred ee
Confidence 54
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-08 Score=87.52 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=89.1
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHH-HHHHHHHHHHHHHHH-----hcc-----
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMR-LSDLFCILGWLAIAF-----SKQ----- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~-~~~~~~~~~~~~~~~-----~~~----- 148 (312)
..|.+.+++|.+..+.++.. +...++..++.++.|+++||+|||+.+. .+.+...++.+.... .++
T Consensus 244 ~~p~~~~~~g~s~~~~~~~~---~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 320 (402)
T TIGR00897 244 FLPMFVAELGFSTSEWLQIW---GTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL 320 (402)
T ss_pred HHHHHHHHcCCChhHHHHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH
Confidence 45556677899988888888 8899999999999999999999887653 222222222222111 011
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
....+.|. ++++|+++.++.+....+|..++|.+. +..+|+..+++.+++.++..+...+
T Consensus 321 ~~~~~~G~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 321 IIAIALGIFLAGYVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 11234555 456899999999999999888888766 4458899988888777776655544
Q ss_pred c
Q 048699 210 I 210 (312)
Q Consensus 210 ~ 210 (312)
+
T Consensus 400 ~ 400 (402)
T TIGR00897 400 I 400 (402)
T ss_pred h
Confidence 3
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=93.77 Aligned_cols=124 Identities=11% Similarity=0.002 Sum_probs=85.1
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh----cChhHH-HHHHHHHHHHHHHHHHHhcc------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL----TGQRCA-MRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~Grk~~-~~~~~~~~~~~~~~~~~~~~------ 148 (312)
...++.+.+|++....|.+. ++..+..++..++.|+++|| +|||+. ++++.+..+++.++....++
T Consensus 32 l~~~~t~~~gls~~~~g~i~---~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMF---LVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHH---HHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 45567888999999999999 99999999999999999998 787544 44565555555544433321
Q ss_pred ---------------------cceeeeecC-CCCchhHHHHHHHHHHHHHHHHHHHhh----h-------hHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIA-PKNVRGAYTATNQLLVASGLSVTYLVG----T-------VVSCLVLALI 195 (312)
Q Consensus 149 ---------------------~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~----~-------~~~w~~~~~~ 195 (312)
..++..|+. ++++|.+..+.-..+..+|..+++.+. . ..+|+..+.+
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i 188 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 224557766 557788877776666666655554321 1 2368877777
Q ss_pred HHHHHHHHHHH
Q 048699 196 AAVPCLLQVVG 206 (312)
Q Consensus 196 ~~~~~~~~~~~ 206 (312)
.++++++..+.
T Consensus 189 ~~ii~~v~~~~ 199 (444)
T PRK09669 189 MGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=89.92 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=77.3
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
.|.+.++.|.+..+.+... +...++..++.++.|++.||+|||+.+..+.++..++.++.....+
T Consensus 254 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
T PRK12307 254 LPTYLAGEGFDTGVVSNLM---TAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 4444455688888888888 8899999999999999999999999888777655444333222111
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
.+.++.|.+|++.||++.++......+|+.++|.+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g 378 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT 378 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH
Confidence 3356689999999999999988877888888877763
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=89.05 Aligned_cols=103 Identities=28% Similarity=0.291 Sum_probs=78.9
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHH-HHHhcc----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLA-IAFSKQ---------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~-~~~~~~---------- 148 (312)
..+++.+++|.+..+.+++. +...++..++.++.|++.||+|||+.+.++.++..+..+. .....+
T Consensus 261 ~~~~~~~~~g~s~~~~~~~~---~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (405)
T TIGR00891 261 LPTYLKADLGLSPHTVANIV---VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF 337 (405)
T ss_pred hHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 34456677899999999998 9999999999999999999999999887776544222211 111111
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
.+.++.|..|++.|+++.++.+....+|..+++.+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g 385 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999998888888888877763
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9e-08 Score=86.58 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=85.2
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHH-HHHhcc----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLA-IAFSKQ---------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~-~~~~~~---------- 148 (312)
..+++.+.+|.+..+.+++. +...++..++.++.|+++||+|||.... +..+..++... ....++
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~---~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l 303 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLL---LLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIF 303 (390)
T ss_pred HHHHHHHhcCCCccHHHHHH---HHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 34556667889988899988 9999999999999999999999887543 43333333322 222222
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLV----GTVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
....+.+..| +.|+++++++.....+|..+|+.+ .+.++++..+.+.+++.+++.+..
T Consensus 304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 2234456555 688998887766666655555555 466789999998888877765544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-09 Score=92.49 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=80.9
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHH--HHHHHh--cc---------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGW--LAIAFS--KQ--------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~--~~~~~~--~~--------- 148 (312)
.++++++|.+..+.+... ....++..++.++.|+++||+|||+.+..+..+..+.. +...+. .+
T Consensus 244 ~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (394)
T TIGR00883 244 TYLTQTLGLSANSALLVL---MLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVL 320 (394)
T ss_pred HHHHHhcCCChhHHHHHH---HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345577888888888888 89999999999999999999999998775444333222 111121 11
Q ss_pred ------------cceeeeecCCCCchhHHHHH-HHHHHHHHHHHHHHhh----hhHH-HHHHHHHHHHHHH
Q 048699 149 ------------IPIYITEIAPKNVRGAYTAT-NQLLVASGLSVTYLVG----TVVS-CLVLALIAAVPCL 201 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~----~~~~-w~~~~~~~~~~~~ 201 (312)
...++.|.+|++.|+++.++ ++++..+|..++|.+. +..+ |++.++...+.++
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 321 GLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 34567899999999998886 4555566666666554 4445 7777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-08 Score=86.59 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=91.2
Q ss_pred cccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------
Q 048699 84 ITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------------- 148 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------------- 148 (312)
+.+++|.+..+.++.. +...++.+++.++.+++.||+|+|+.+.++.+...+..++.++.++
T Consensus 231 ~l~~~g~s~~~~g~l~---~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~ 307 (382)
T TIGR00902 231 YWQAAGISASATGLLW---GIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTF 307 (382)
T ss_pred HHHHCCCCHhHHHHHH---HHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 3356899999999988 8999999999999999999999999999999999888887777666
Q ss_pred ------cceeeeecCCCCchhHHHHHHH-HHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH
Q 048699 149 ------IPIYITEIAPKNVRGAYTATNQ-LLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 ------~~~~i~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~ 206 (312)
...++.+. |+++|++..++++ ...++|..+++.++ +.+++ ..|++.+++++++++.
T Consensus 308 ~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 308 AVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 44577777 8999999999875 45666666666665 44565 4555666665555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=89.69 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=87.6
Q ss_pred HHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------------------cceeeeecCCCCchhH
Q 048699 111 SGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------------------------IPIYITEIAPKNVRGA 164 (312)
Q Consensus 111 ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~i~e~~~~~~r~~ 164 (312)
.|..+...+.|++|||+..+.+.+++.+..+..+...+ .-++.+|.+|.+.|++
T Consensus 363 PGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t 442 (538)
T KOG0252|consen 363 PGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST 442 (538)
T ss_pred CceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence 35566778899999999999999999988887776554 3456699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----h-----hHHHHHHHHHHHHHHHHHHHHhhcccCChHh
Q 048699 165 YTATNQLLVASGLSVTYLVG----T-----VVSCLVLALIAAVPCLLQVVGLFFIPEIAQS 216 (312)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~----~-----~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~ 216 (312)
..++.....-+|++++...- . ..+.++.+++.+.++++..+..+++||+.+.
T Consensus 443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK 503 (538)
T ss_pred hhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence 99999999888888886554 2 3478899999999999988888899998643
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=82.74 Aligned_cols=221 Identities=15% Similarity=0.120 Sum_probs=131.7
Q ss_pred CCccccccc-cCCcccchh-HHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 79 PAESGITAD-LGLSVREDL-LIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
...|++.+. .|++.++.. -+. -...-..+...++...+.|.+|.|++++++.+...+...+..+.++
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~---Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIY---PVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 345566665 788877754 233 4555667778889999999999999999999988888877777766
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHhhcc
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT------VVSCLVLALIAAVPCLLQVVGLFFI 210 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (312)
.++|+--..++++--++.+....+..+|..++.+++. ..+++....+......++++..+++
T Consensus 102 ~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 102 FFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666677777777777666655555555554442 2356667667666666666666778
Q ss_pred cCChHhHHHHHhcCCHHHHHHHHHHHhCCCC-ChhhhhHHHHHhhhhhccccccchhhhcc---ccchhHHHHHHHHHHH
Q 048699 211 PEIAQSIIRRATIGKEKELDTTLQRLMGKTA-DISMESPDIRDYTKTFKNDSRAGIFYLFQ---RNYAYSLSVGVGLMVM 286 (312)
Q Consensus 211 pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 286 (312)
|..++-. .-+++..+... .++....+. +.+++..+..+..+......+..++.+++ .-+..+.++.+.+||+
T Consensus 182 P~~~~S~---~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa 257 (412)
T PF01770_consen 182 PMPKRSL---FFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWA 257 (412)
T ss_pred CCCCccc---ceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 8765433 22221111100 000000000 00000000000000001111122233333 3466777888999999
Q ss_pred hhhhchhHHHhcHHHHHHHc
Q 048699 287 QPLVGSAAIAYYASYIFAAA 306 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~ 306 (312)
...+|++-+.+|...+.++.
T Consensus 258 ~atcgy~qv~nYvQ~LW~~v 277 (412)
T PF01770_consen 258 FATCGYYQVINYVQSLWDTV 277 (412)
T ss_pred HHHhHHHHHHHHHHHHHHhc
Confidence 99999999999999988877
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.8e-08 Score=88.01 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=84.2
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--Ch-hHHHHH---HHHHHHHHHHHHH-----------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT--GQ-RCAMRL---SDLFCILGWLAIA----------- 144 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--Gr-k~~~~~---~~~~~~~~~~~~~----------- 144 (312)
+++.+++|++..+.+... +.+.++..+|.++.|+++||+ ++ |..... +.++..++.....
T Consensus 268 ~~l~~~~g~s~~~a~~~~---~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (434)
T PRK11663 268 LYMSETLGVDLVTANSAV---SMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACF 344 (434)
T ss_pred HHHHhccCCCHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 345577899999999888 999999999999999999999 32 332111 1111111111000
Q ss_pred ----Hhcc-----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 145 ----FSKQ-----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 145 ----~~~~-----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
+... ...++.|.+|++.|+++.++.+....+|..++|.+. +..+|+..|++.++++++..+..
T Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 345 FTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 0000 123457889999999999999999999998887655 45689999988877766655444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=91.17 Aligned_cols=130 Identities=20% Similarity=0.185 Sum_probs=93.8
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh----hcChhHHHH-HHHHHHHHHHHHHHHh-c-c----
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD----LTGQRCAMR-LSDLFCILGWLAIAFS-K-Q---- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~Grk~~~~-~~~~~~~~~~~~~~~~-~-~---- 148 (312)
..+++.+.+|+++...+.+. .+.-+..++..++.|.++| |+|||+.++ ++.+..+++.+++... + +
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~---~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLIL---LVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHH---HHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 45567778899998888888 8999999999999999999 899876655 5677777777766655 3 1
Q ss_pred -----------------------cceeeeecCC-CCchhHHHHHHHHHHHHHHHHHHHhh----hh-------HHHHHHH
Q 048699 149 -----------------------IPIYITEIAP-KNVRGAYTATNQLLVASGLSVTYLVG----TV-------VSCLVLA 193 (312)
Q Consensus 149 -----------------------~~~~i~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~----~~-------~~w~~~~ 193 (312)
..++..|..+ +++|.+..+.-..+..+|.++...+. .. .+|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 2357788886 57899888888777777775443332 11 1688888
Q ss_pred HHHHHHHHHHHHHh-hcccC
Q 048699 194 LIAAVPCLLQVVGL-FFIPE 212 (312)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~pe 212 (312)
++.+++.++..+.. +..+|
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHhhhhhheeee
Confidence 88777766655543 33344
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-08 Score=85.88 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=92.4
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--ChhHHHHH-HHHHHHHHHHHHHHhcc---------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT--GQRCAMRL-SDLFCILGWLAIAFSKQ--------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--Grk~~~~~-~~~~~~~~~~~~~~~~~--------- 148 (312)
..++.+..|.+..+.++.. +.+-++++.|++++|+++||+ |||....+ .+++..++.+....+++
T Consensus 276 p~YL~e~k~~s~~~a~~a~---~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~ 352 (448)
T COG2271 276 PLYLSEVKGFSLVKANWAI---SLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAIL 352 (448)
T ss_pred HHHHHHhcCCCHHHHHHHH---HHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 3477778899999999999 999999999999999999996 67765544 34444444444445443
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHH-HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVAS-GLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
+.....|..|++.-|++.|+.+.+..+ |...+.... +.+||...|++..+.++++.+..
T Consensus 353 l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 353 LFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 223458999999999999999988877 666553332 45799999988777766665544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-08 Score=89.27 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cceeeeecCCCCc
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPIYITEIAPKNV 161 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~i~e~~~~~~ 161 (312)
++..++..++.+..|+++||+|||+.+..+.++..++.+...+.++ ...++.+..|++.
T Consensus 265 ~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (408)
T PRK09874 265 SVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI 344 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc
Confidence 6677888899999999999999999998887777666655554443 2234456778899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 162 RGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 162 r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
||+..++.+....+|..+++.++ +..+|+..|++.+++.++..+..+
T Consensus 345 ~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 345 AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999988887777877777765 445899999998887777665443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-08 Score=89.43 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=87.6
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh--cChhHHHHH--HHHHHHHHHHHHHHhcc--------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL--TGQRCAMRL--SDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr--~Grk~~~~~--~~~~~~~~~~~~~~~~~-------- 148 (312)
++.+.+++|.+..+.+++. ++..++.+++.++.|+++|| +++|+...+ +.++.+++.++....++
T Consensus 264 l~~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 264 LVPYAKDKGVDEYEAAFLL---SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3444456799999999988 99999999999999999997 344433333 23333333333333333
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhH-HHHHHHHHHHHHHHHHHH
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVV-SCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~-~w~~~~~~~~~~~~~~~~ 205 (312)
...++.|.+|++++++..++++....+|.++++.++ +.. +|++.|++.+++.+++.+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 345667889999999999999999999999998776 334 588998888777655544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-07 Score=84.30 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=91.6
Q ss_pred CccccccccCCcccchhHHHHHHH-HHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHH---HHhc-c------
Q 048699 80 AESGITADLGLSVREDLLIEASLL-LMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAI---AFSK-Q------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~---~~~~-~------ 148 (312)
..|++.+++|.+.++.++.. . ...++.++|.+++|+++||+|+|+.+.++.++.+++.++. +... +
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~---~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~ 321 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVN---KTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA 321 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34556667899999988875 5 4457999999999999999999887766555433322211 1111 1
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...+..+..+++.+++..++.+....+|..+++.+. +..||+..|.+.+++++++++....
T Consensus 322 ~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 322 AVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 334556788888999999988887777776554443 5568999999888888887666655
Q ss_pred ccC
Q 048699 210 IPE 212 (312)
Q Consensus 210 ~pe 212 (312)
+++
T Consensus 402 ~~~ 404 (491)
T PRK11010 402 CRQ 404 (491)
T ss_pred HHh
Confidence 443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-07 Score=77.25 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=92.5
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------- 148 (312)
+..-|.+++.+|++.++...+. +.-.+|..+| ++.|.+.|++|++.++.+|.+...+|..+..++.+
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~---~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~ 97 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLS---TAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW 97 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHH---HHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence 4566789999999999999999 9999998875 88999999999999999999999999888776544
Q ss_pred -------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH---H-HHHHHHHHHHHHHHHHH
Q 048699 149 -------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV---S-CLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 -------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~ 205 (312)
......+.+| ++||++.++.-...++++.+-..+...+ + -...++....+.++.++
T Consensus 98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 98 LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 1112235676 5799999999888888776654443222 2 23333334444444444
Q ss_pred Hhhccc
Q 048699 206 GLFFIP 211 (312)
Q Consensus 206 ~~~~~p 211 (312)
..++++
T Consensus 177 ~~~~vr 182 (250)
T PF06813_consen 177 AMFFVR 182 (250)
T ss_pred Hhhhee
Confidence 444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=87.70 Aligned_cols=132 Identities=18% Similarity=0.032 Sum_probs=86.9
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC-----hhHHHHHHHHHHH-HHHHHHHHhcc---
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG-----QRCAMRLSDLFCI-LGWLAIAFSKQ--- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G-----rk~~~~~~~~~~~-~~~~~~~~~~~--- 148 (312)
....+.+.+++|++.++.+... +...+...+-.+ +|.++||++ ||+.++++.++.. ++....+..++
T Consensus 46 ~~~~~~l~~~lg~s~~~i~~~~---sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~ 121 (468)
T TIGR00788 46 LPLSPMLTDDLGLDGARYQRLV---GLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAK 121 (468)
T ss_pred hhhhHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3456677888999999998888 899999988666 999999998 7777777766652 33222222222
Q ss_pred -------------------cceeeeecCCCCchhHH---HHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 048699 149 -------------------IPIYITEIAPKNVRGAY---TATNQ----LLVASGLSVTYLVGTVVSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 -------------------~~~~i~e~~~~~~r~~~---~~~~~----~~~~~g~~~~~~~~~~~~w~~~~~~~~~~~~~ 202 (312)
.-.+..|..+ +.++.. .+... .+..+|..++..+...++|+..|++.+++.++
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll 200 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLL 200 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 3346667766 333332 22222 34444444444445667899999998887777
Q ss_pred HHHHhhcccCCh
Q 048699 203 QVVGLFFIPEIA 214 (312)
Q Consensus 203 ~~~~~~~~pes~ 214 (312)
..+..++++|++
T Consensus 201 ~~~~~~~~~E~~ 212 (468)
T TIGR00788 201 QLFVSNLSKERR 212 (468)
T ss_pred HHHHHHhccccc
Confidence 766667778753
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-07 Score=85.51 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=78.4
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
...|.+.+++|.+..+.++.. +...++..++.++.|+++||+|||+.+....+......++.....+
T Consensus 271 ~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR00895 271 NWLPKLMVELGFSLSLAATGG---ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347 (398)
T ss_pred HHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 345577778899988888888 9999999999999999999999995544333332222222221222
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
...++.|.+|++.|+++.++......+|..+++.+..
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4467799999999999999999999999999987764
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=86.80 Aligned_cols=123 Identities=14% Similarity=0.025 Sum_probs=81.7
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh----hcCh-hHHHHHHHHHHHHHHHHHHHhcc------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD----LTGQ-RCAMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~Gr-k~~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
...++.+.+|+++...|.+. .+.-+..++..++.|+++| |+|| |+.++++.+..+++.+++...++
T Consensus 29 l~~yyt~v~Gls~~~vg~i~---~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~ 105 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLF---LVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQ 105 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHH---HHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHH
Confidence 34566777899999999999 9999999999999999999 6699 45555566666666544433221
Q ss_pred ---------------------cceeeeecC-CCCchhHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIA-PKNVRGAYTATNQLLVASGLSVTYLVG-----------TVVSCLVLALI 195 (312)
Q Consensus 149 ---------------------~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~-----------~~~~w~~~~~~ 195 (312)
..+++.|+. ++++|.+..+.-..+..+|+++.+.+. ...+|+....+
T Consensus 106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i 185 (473)
T PRK10429 106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLV 185 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 224668887 588999888875555555544432221 11256666666
Q ss_pred HHHHHHHHHH
Q 048699 196 AAVPCLLQVV 205 (312)
Q Consensus 196 ~~~~~~~~~~ 205 (312)
.+++.++..+
T Consensus 186 ~~~~~~~~~~ 195 (473)
T PRK10429 186 LIAFFIVSTI 195 (473)
T ss_pred HHHHHHHHHH
Confidence 6555544433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-07 Score=83.25 Aligned_cols=132 Identities=22% Similarity=0.194 Sum_probs=101.4
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChh--HHHHHHHHHHHHHHHHHHH--------hc
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQR--CAMRLSDLFCILGWLAIAF--------SK 147 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk--~~~~~~~~~~~~~~~~~~~--------~~ 147 (312)
.....+..+++|++..+...+. .+..+..++|++++|++.||+|.| ++++++.+++.+..+...+ .+
T Consensus 302 ~~~~i~a~~~lg~s~~~l~~~~---l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~ 378 (477)
T PF11700_consen 302 SFAGIYATEVLGMSTTQLIVFG---LVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK 378 (477)
T ss_pred HHHHHHHHHhcCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence 3344566778999999988888 999999999999999999999999 8888877776443333222 11
Q ss_pred c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHH
Q 048699 148 Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-----SCLVLALIAAVPCL 201 (312)
Q Consensus 148 ~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~ 201 (312)
+ .-++.+|+.|+++.+...|++.+..-..+.+||++.... +-|+.++...++.+
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~ 458 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFL 458 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 2 336789999999999999999999988888888876332 47788887777777
Q ss_pred HHHHHhhcccC
Q 048699 202 LQVVGLFFIPE 212 (312)
Q Consensus 202 ~~~~~~~~~pe 212 (312)
+.+++.+.++.
T Consensus 459 ~gl~ll~~v~~ 469 (477)
T PF11700_consen 459 IGLILLFFVDV 469 (477)
T ss_pred HHHHHHhhccc
Confidence 77766665543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=87.19 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=82.3
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHH---HHHHHHHHHh--cc-------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFC---ILGWLAIAFS--KQ------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~---~~~~~~~~~~--~~------- 148 (312)
..++++..|.+..+.++.. ....++..++.+++|+++||+|+++....+..+. .++.+..... .+
T Consensus 275 p~~l~~~~g~s~~~~~~~~---~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T TIGR00712 275 PTYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMIC 351 (438)
T ss_pred HHHHHHccCCChhhHHHHH---HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 3455566788988889888 8999999999999999999996543212221111 1111111000 00
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHH-HHHHHHh----hhhHHHHHHHHHHHHHHHHHHH-Hhh
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASG-LSVTYLV----GTVVSCLVLALIAAVPCLLQVV-GLF 208 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g-~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~-~~~ 208 (312)
......|.+|++.|+++.++.+....+| ..++|.+ .+..+|...+++.++..+++.+ ..+
T Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 1124578899999999999887665554 3455544 3556888888876666555444 345
Q ss_pred cccCCh
Q 048699 209 FIPEIA 214 (312)
Q Consensus 209 ~~pes~ 214 (312)
.+||.+
T Consensus 432 ~~~~~~ 437 (438)
T TIGR00712 432 VMIGEK 437 (438)
T ss_pred HHhhcc
Confidence 566653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.6e-07 Score=84.10 Aligned_cols=124 Identities=21% Similarity=0.189 Sum_probs=97.7
Q ss_pred Ccccc-ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 80 AESGI-TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
.+|.+ .+.+|.++...|++. +.+.+|.++|+++.+++.+|+++++.+..+.++.+++.+..++.++
T Consensus 240 LlPl~a~~~l~~~a~~yGll~---a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l 316 (524)
T PF05977_consen 240 LLPLFARDVLGGGASGYGLLL---AAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL 316 (524)
T ss_pred hhhHHHHHHhCCcHHHHHHHH---HHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45544 466899999999999 9999999999999999999999999988888888888888877766
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVA----SGLSVTYLVGTVVSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~----~g~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 206 (312)
..+.+++..|++.||++++++.+... +|.++...+++.++-+..+.+.++..++..+.
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 34566888999999999998876554 45555555567778888887776654444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.8e-07 Score=82.96 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=77.4
Q ss_pred Cccccc-cccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 80 AESGIT-ADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
..|++. ..+|.++.+.++.. ....++..++.++.|++.||+|||+++..+.++..++.++..+...
T Consensus 283 ~~~~~~~~~~g~~~~~~g~~~---~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (471)
T PRK10504 283 MTPVFLQIGLGFSPFHAGLMM---IPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFV 359 (471)
T ss_pred HHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 345443 35788888888888 8888888888899999999999999998887766665554433211
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
...++.+..|++.++.+.++.++...+|..+|+.+.
T Consensus 360 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 360 LFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 223445778999999999999888888877776665
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=78.82 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=82.7
Q ss_pred cccccccCCcccchhHHHHHHHHHH-HHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHH---HHhc-c--------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMT-IGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAI---AFSK-Q-------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~---~~~~-~-------- 148 (312)
+.+.+++|++.++.+++. .... ++..++.+++|++.||+|+|+.+.++.++..+..+.. +..+ +
T Consensus 234 ~~l~~~~G~~~~~~g~~~---~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVN---KTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHHhcCCCHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 456677899988888876 6654 4688999999999999999988776655444332221 2211 1
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
...++.+..|.+.++...++...+..+++.++..+.+.+||+..|.+.+++++++++...
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 233556666666655544444444444445566666888999999998888877665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.7e-07 Score=81.78 Aligned_cols=100 Identities=23% Similarity=0.229 Sum_probs=68.0
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHH-HHH-H--hcc---------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWL-AIA-F--SKQ--------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~-~~~-~--~~~--------- 148 (312)
+++++.+|.+..+.++.. ....++..++.++.|+++||+|||+.+..+.++..+..+ ... . .++
T Consensus 263 ~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T PRK15075 263 TFGKTVLHLSAADSLLVT---LCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVEL 339 (434)
T ss_pred HHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 345556899888888888 888999999999999999999999987765443322111 000 0 000
Q ss_pred ------------cceeeeecCCCCchhHHHHHH-HHHHHHHHHHHHHhh
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATN-QLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~ 184 (312)
...++.|.+|++.|+++.++. +++..+++.++|.+.
T Consensus 340 ~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~ 388 (434)
T PRK15075 340 WLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIS 388 (434)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHH
Confidence 235678999999999999875 444444344455444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=80.06 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=67.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------------------
Q 048699 91 SVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------- 148 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------- 148 (312)
+....+++. +...++.+++.+++++++||+|||+++.++.++.+++.++..+.++
T Consensus 255 ~~~~~~~~~---~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 331 (437)
T TIGR00792 255 DPELFSYMG---SIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGL 331 (437)
T ss_pred ChHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666 7788999999999999999999999998888777766655544322
Q ss_pred cceeeeecCC-------CCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 IPIYITEIAP-------KNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ~~~~i~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
..++++|..+ ++.+|...++.+....+|..+++.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 332 VWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred HHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555543 56679999998888888877776654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-07 Score=82.69 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=94.1
Q ss_pred ccccccccC----CcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHHHHHHHhc--c-----
Q 048699 81 ESGITADLG----LSVREDLLIEASLLLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGWLAIAFSK--Q----- 148 (312)
Q Consensus 81 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~--~----- 148 (312)
.-++..+++ ++.+++.-+. +.+..-.=+..+++||++||+ |+|+++..|.++..+|-++.+.+. .
T Consensus 45 ~~Yl~~~~~~gLg~~~~~A~~l~---~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~ 121 (498)
T COG3104 45 ILYLYYQLGDGLGFDETHATGLF---SAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLY 121 (498)
T ss_pred HHHHHHhccccCCcChHhhHHHH---HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence 334444444 8877766666 666666667788999999995 999999999999999999988874 2
Q ss_pred ----------------cceeeeecCCCC--chhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKN--VRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~ 206 (312)
....++|.+|++ +|-...+++.++.++|++++|.+. ...+|...|...++-..+.++.
T Consensus 122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 456778888653 355666677777788888877765 5568999999888877777665
Q ss_pred hhcc
Q 048699 207 LFFI 210 (312)
Q Consensus 207 ~~~~ 210 (312)
+++.
T Consensus 202 f~~~ 205 (498)
T COG3104 202 FLLG 205 (498)
T ss_pred HHHc
Confidence 5544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=77.44 Aligned_cols=120 Identities=12% Similarity=-0.057 Sum_probs=82.6
Q ss_pred cccccccCCcccchhHHHHHHHHHH-HHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHH---------------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMT-IGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAF--------------- 145 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~--------------- 145 (312)
+++ ++.|.+.++.+++. .... .+..++.++.|++.||+|+|+.+.++.++.++..+....
T Consensus 233 ~~l-~~~G~s~~~ig~~~---~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
T TIGR02718 233 LYL-VDAGWPLEWIGRLG---MAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS 308 (390)
T ss_pred HHH-HhcCCCHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence 344 45799999999887 7665 466778899999999999999988766544222111100
Q ss_pred -------hcc-----cceeeeecCCC-CchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 048699 146 -------SKQ-----IPIYITEIAPK-NVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 146 -------~~~-----~~~~i~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~ 205 (312)
... ....+.+..++ +.+++..+..+....+|..+++.++ +..|++..|++.+++.+++.+
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 001 12233444554 8899999999888888888887776 455788888887776666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.8e-07 Score=74.37 Aligned_cols=126 Identities=17% Similarity=0.057 Sum_probs=90.0
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHH-HHHHHhcc-----------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGW-LAIAFSKQ----------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~-~~~~~~~~----------- 148 (312)
...+++.||+|+.+.+.+. +..+...++.+++.|.++||+|++...+.+..+..+.. .+..++.-
T Consensus 288 ~~fF~~rfGlS~~~a~~i~---s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGL 364 (459)
T KOG4686|consen 288 PMFFQKRFGLSAVSAGNIL---STVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGL 364 (459)
T ss_pred HHHHHHhhCCChhhccchh---hhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhh
Confidence 4467899999999999999 99999999999999999999999988877665544433 22222211
Q ss_pred --------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHH-HHHHHHHHHHhhc
Q 048699 149 --------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV-------VSCLVLALIA-AVPCLLQVVGLFF 209 (312)
Q Consensus 149 --------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~~w~~~~~~~-~~~~~~~~~~~~~ 209 (312)
....++-+.|.+.-|++.+..+...++|-.+.++++.. ..|--.|++. ..+++..+.+.+.
T Consensus 365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33455667888999999999999999998887777622 2354455443 4444444444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-07 Score=81.85 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=81.3
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------------
Q 048699 89 GLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------------- 148 (312)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------------- 148 (312)
+.+....+... +...+...++.+..|++.||+|||+.+.++.++.+++..+....++
T Consensus 250 ~~~~~~~g~~~---~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 326 (396)
T TIGR00882 250 QQGTRVFGYVT---TMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLV 326 (396)
T ss_pred ccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 34445567777 8888889999999999999999999999888877776666555544
Q ss_pred -cceeeeecCCCCchhHHHHH-HHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 048699 149 -IPIYITEIAPKNVRGAYTAT-NQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 -~~~~i~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~ 205 (312)
...+..+..+++.+++..+. ++....+|..+++.+. +..||+..|.+.+++.++..+
T Consensus 327 ~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 327 GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 11244566677777776655 4566666666665444 556899999887777655544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-07 Score=83.67 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=71.9
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC-hhHH-HHHHH-HHHHHHHHHHHH-------------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG-QRCA-MRLSD-LFCILGWLAIAF------------- 145 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G-rk~~-~~~~~-~~~~~~~~~~~~------------- 145 (312)
.++.+.+|.+..+.++.. +...++..++.++.|+++||.+ ||+. +.... ....++..+...
T Consensus 241 ~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T TIGR00881 241 LYLTQEKGFSKEKASWAF---TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL 317 (379)
T ss_pred HHHHHHhCCCHHHHHHHH---HHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 355667899988999888 9999999999999999999864 3322 21111 111111111110
Q ss_pred -----hcc-----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHH
Q 048699 146 -----SKQ-----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVL 192 (312)
Q Consensus 146 -----~~~-----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~ 192 (312)
... ...++.|..|++.|+++.++.+....+|..+++.+. +..+|++.
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 318 FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 000 234668999999999999999888888887777654 44566653
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=80.31 Aligned_cols=123 Identities=11% Similarity=-0.061 Sum_probs=86.3
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh----cChhHHHH-HHHHHHHHHHHHHHHhcc------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL----TGQRCAMR-LSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~Grk~~~~-~~~~~~~~~~~~~~~~~~------ 148 (312)
...++.+..|+++...|.+. .+.-+--++..++.|.++|| +|||+.++ ++.+..+++.+++...+.
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~---~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~ 108 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMF---LVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK 108 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHH---HHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence 34456778899999999988 99999999999999999995 79876655 565666666665554432
Q ss_pred ---------------------cceeeeecCC-CCchhHHHHHHHHHHHHHHHHHHHhh----hh-------HHHHHHHHH
Q 048699 149 ---------------------IPIYITEIAP-KNVRGAYTATNQLLVASGLSVTYLVG----TV-------VSCLVLALI 195 (312)
Q Consensus 149 ---------------------~~~~i~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~----~~-------~~w~~~~~~ 195 (312)
..++..|..+ +++|.+..+....+..+|.++++.+. .. .+|+....+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i 188 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAV 188 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 2245567765 78999999988888777766654442 11 256766666
Q ss_pred HHHHHHHHHH
Q 048699 196 AAVPCLLQVV 205 (312)
Q Consensus 196 ~~~~~~~~~~ 205 (312)
.+++.+++..
T Consensus 189 ~~ii~~i~~~ 198 (460)
T PRK11462 189 LSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHHH
Confidence 6655544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-06 Score=75.49 Aligned_cols=69 Identities=23% Similarity=0.208 Sum_probs=52.5
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC-hhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG-QRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G-rk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
..+..+.+.++.|++..|.|.+. ++..+..+++++++|+++||.+ +|+.+.++.++.++........++
T Consensus 21 ~~p~~~~~L~~~G~s~~qIG~l~---a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~ 90 (400)
T PF03825_consen 21 FLPYLPLYLESRGFSGTQIGILL---AVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS 90 (400)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445666677899999999999 9999999999999999999986 566666666665555544444444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-06 Score=76.87 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=80.8
Q ss_pred cccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------------
Q 048699 86 ADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------------- 148 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------------- 148 (312)
++.|.+..+.+... +...++..++.++.|++.||+|+|+.+.++.+..+++.++.+..++
T Consensus 233 ~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 233 QAAGYSASTIGYLW---SLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV 309 (382)
T ss_pred HHCCCCHhHHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 56888888888888 8888899999999999999999999999888888877666665555
Q ss_pred ----cceeeeecCCCCchhHHHHHHH-HHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 048699 149 ----IPIYITEIAPKNVRGAYTATNQ-LLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 ----~~~~i~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~ 205 (312)
...++.+. +++++++..+..+ ....+|..+++.++ +.+++ ..++..+++.+++++
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 22344554 5566788888765 44455555555554 44465 355555555554433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=90.11 Aligned_cols=118 Identities=20% Similarity=0.167 Sum_probs=87.0
Q ss_pred CccccccccCCccc-chhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 80 AESGITADLGLSVR-EDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
..+++.+.+|.+.. +.+++. +...++.+++++++|+++||+++++.+.++.++.+++.++..+..+
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~---~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLL---AASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL 331 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHH---HHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34456677899888 888888 9999999999999999999999998887777666655555444333
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHH
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-----SCLVLALIAAVPC 200 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~ 200 (312)
...++.+..|++.||+++++.++...+|.++++.++..+ ++...+++.+.+.
T Consensus 332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 345678889999999999999888888876665554322 3444555444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-07 Score=80.55 Aligned_cols=127 Identities=22% Similarity=0.249 Sum_probs=101.8
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (312)
+-..++|++..+...+. ....+..++|++++|+|.||+|.|+++.++.+++.+.++...+...
T Consensus 278 fg~~~~gls~~~lll~g---~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s 354 (438)
T COG2270 278 FGAADLGLSSTELLLIG---IALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTS 354 (438)
T ss_pred HHHHHcCccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHh
Confidence 44558999999999999 9999999999999999999999999999998888777665544433
Q ss_pred -------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHhhcccC
Q 048699 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-----SCLVLALIAAVPCLLQVVGLFFIPE 212 (312)
Q Consensus 149 -------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pe 212 (312)
.-+|..+..|+++-++..|++++....++.+||++...+ +-|..+....++.++.++..+++|+
T Consensus 355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 346889999999999999999999999999998876333 4566666666666666666666554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-06 Score=76.95 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=79.7
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (312)
.+.+++|.+..+.+... +...++.+++.++.+++.||+|||+.+.++.++..++.++..+..+
T Consensus 229 ~~~~~~g~~~~~~~~~~---~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 305 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIM---ALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAG 305 (392)
T ss_pred HHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888 8899999999999999999999999998888777766665554332
Q ss_pred -----cceeeeecCCCCch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 048699 149 -----IPIYITEIAPKNVR-GAYTATNQLLVASGLSVTYLVGTVVSCLVLALIAAV 198 (312)
Q Consensus 149 -----~~~~i~e~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~w~~~~~~~~~ 198 (312)
......+..|.++| +.+.++..++..+|..+++.+...+++.....+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 306 FSVGFGVAMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHhHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 11233344454434 555566677777788888777777776554444333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.2e-06 Score=71.99 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=50.6
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLA 142 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~ 142 (312)
.-.+.+++|.+..+.+.+- ...+...++.+.+.|.++||+|||+.-++.+++..++++.
T Consensus 57 ~Y~LY~~yg~~~~qIa~Lf---~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 57 LYALYESYGFSEHQIAILF---VAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred hHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3345567999999999888 8999999999999999999999999988888888877754
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-07 Score=80.82 Aligned_cols=118 Identities=16% Similarity=0.058 Sum_probs=79.2
Q ss_pred CCcccccccc--CCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHH-HHHHHHHHHHHHHHHHHhcc-------
Q 048699 79 PAESGITADL--GLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCA-MRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 79 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~-~~~~~~~~~~~~~~~~~~~~------- 148 (312)
...|.+.+++ +.+..+.+... ....++..+|.++.|+++||+|||+. .....++..++.++.....+
T Consensus 263 ~~~p~~l~~~~~~~s~~~~~~~~---~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (412)
T TIGR02332 263 IWTPQILQSFNQGSSNIMIGLLA---AIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLG 339 (412)
T ss_pred HHHHHHHHhcCCCCcHHHhHHHh---hHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455444543 56777778888 99999999999999999999997764 33222222222111111100
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhH-HHHHHHHHHHHH
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVV-SCLVLALIAAVP 199 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~-~w~~~~~~~~~~ 199 (312)
......|.+|++.|+++.++.+....+|..++|.+. +.. +|++.+++.++.
T Consensus 340 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 340 IIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 123446778999999999999999999999888665 333 488887766554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=79.39 Aligned_cols=123 Identities=19% Similarity=0.257 Sum_probs=82.7
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHH-hcc----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAF-SKQ---------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~-~~~---------- 148 (312)
..|++.+.+|.+..+.++.. +...++..++.++.|++.||+|+|+.+.++..+.+++.++... .++
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~---~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIM---MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFI 298 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHH---HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34566667899999999988 9999999999999999999999999888877766666544432 222
Q ss_pred --------c---c-eeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----h-hHHHHHHHHHHHHHHHHHHHHh
Q 048699 149 --------I---P-IYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----T-VVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 --------~---~-~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~-~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
. . ....+..+++.++.. ..+....+|..+|+.++ + ..+|+..+.+.++.+++.+...
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 299 CCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 1 1 122333344444443 33455566766666655 3 3478888888776665554433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-06 Score=73.96 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=74.7
Q ss_pred cccccc--ccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 81 ESGITA--DLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
..++.+ .+|+++++.++.. +.+..+.++|.++.+++.||+|+|+.+.++.++..++.++....+.
T Consensus 164 ~~yl~~~~~~g~s~~~a~~~~---s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~ 240 (310)
T TIGR01272 164 VNFLSDPHALGLPEDQAAHFT---AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLAL 240 (310)
T ss_pred HHHHHhcccCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334443 3689999999999 9999999999999999999999999888877776666554443322
Q ss_pred ----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHH
Q 048699 149 ----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIA 196 (312)
Q Consensus 149 ----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~ 196 (312)
......+..|+ +.+.+.++. ....+|+.+.|.+. +..+.+..+++.
T Consensus 241 g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 241 GLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 12233444443 334555554 34557777777643 445666666543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-05 Score=75.35 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL 122 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr 122 (312)
.++...+...+...+.+.|+ ....+..+.+.+..|.+... .+.. ....+...++..++.++.||
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~------------~~~~~Y~~~if~~~g~~~~~-~~~~---~~~~~v~~~~t~~~~~lvd~ 355 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGI------------NYVFYYSTTIFKSAGLKSDT-FLAS---IILGVVNFLGTLVATYLVDR 355 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCC------------ceEEeehHHHHHhcCCCCch-HHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555566 34444555566666665443 5555 67777778888888999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcc----------------------------------cceeeeecCCCCchhHHHHH
Q 048699 123 TGQRCAMRLSDLFCILGWLAIAFSKQ----------------------------------IPIYITEIAPKNVRGAYTAT 168 (312)
Q Consensus 123 ~Grk~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~i~e~~~~~~r~~~~~~ 168 (312)
+|||+.++.+...+.++.++.+.... ...+.+|.+|.+.|+++.++
T Consensus 356 ~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~ 435 (513)
T KOG0254|consen 356 FGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASL 435 (513)
T ss_pred hccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHH
Confidence 99999999999998888887664311 22477999999999999997
Q ss_pred HHHHHHHHHH-HHHHhh---hhHHHHHHHHHHHHHHHH-HH-HHhhcccCCh
Q 048699 169 NQLLVASGLS-VTYLVG---TVVSCLVLALIAAVPCLL-QV-VGLFFIPEIA 214 (312)
Q Consensus 169 ~~~~~~~g~~-~~~~~~---~~~~w~~~~~~~~~~~~~-~~-~~~~~~pes~ 214 (312)
......+... +....- ...++...|.+.+..+.+ .. ...+++||+.
T Consensus 436 ~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 436 AVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 7555444333 322211 111223455444444333 33 3567789875
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=77.20 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=68.9
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHH---HHHhcc----------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLA---IAFSKQ---------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~---~~~~~~---------- 148 (312)
..+.+.+|.+..+.++.. +...++..++.++.|++.||+|||+.+.++..+..+..+. ....+.
T Consensus 219 ~~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (377)
T PRK11102 219 FVYIELNGVSPQNFGYYF---ALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVA 295 (377)
T ss_pred HHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345666899999999988 9999999999999999999999999888776543322111 111110
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHH-HHHHHHHHHHHhh
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQL-LVASGLSVTYLVG 184 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~ 184 (312)
...++.|..| +.++.+.++.+. ...+|..+++.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 296 AFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455555 788999987754 3567777777665
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=76.44 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=81.5
Q ss_pred Ccccccc-ccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-c---------
Q 048699 80 AESGITA-DLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-Q--------- 148 (312)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-~--------- 148 (312)
..|.+.+ .+|.+..+.++.. +...++..++.++.+++.||+|||+.+..+.++.+++..+..+.+ +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 233 LFPYVQSKYLGRGSTHYGWVL---AAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HhHHHHHHHhCCchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 3455544 4888888899888 999999999999999999999999988877666655555444433 1
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
...++.|..|++.|++..++.+....+|..+++.+..
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g 358 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAG 358 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999988888888877653
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=78.08 Aligned_cols=125 Identities=17% Similarity=0.044 Sum_probs=91.9
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh----cChhHH-HHHHHHHHHHHHHHHHHhcc-------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL----TGQRCA-MRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~Grk~~-~~~~~~~~~~~~~~~~~~~~------- 148 (312)
+-++.+.+|+++...|.+. .+.-+.-++..|+.|.++|| +||+|. ++++.+-.++.+.++..+++
T Consensus 36 l~fYTdv~Gis~~~aG~if---lv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~ 112 (467)
T COG2211 36 LFFYTDVFGLSAALAGTIF---LVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL 112 (467)
T ss_pred HHHHhcccCCcHHHHHHHH---HHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence 3356778999999999888 88889999999999999995 787555 45677888888888877774
Q ss_pred --------------------cceeeeecC-CCCchhHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHH
Q 048699 149 --------------------IPIYITEIA-PKNVRGAYTATNQLLVASGLSVTYLVG-----------TVVSCLVLALIA 196 (312)
Q Consensus 149 --------------------~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~-----------~~~~w~~~~~~~ 196 (312)
..++..|+. .+++|.+..+.-..+..+|.++...+. ...+|+...++.
T Consensus 113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~ 192 (467)
T COG2211 113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL 192 (467)
T ss_pred HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence 124455555 468999999988888888866543332 144788887777
Q ss_pred HHHHHHHHHHhh
Q 048699 197 AVPCLLQVVGLF 208 (312)
Q Consensus 197 ~~~~~~~~~~~~ 208 (312)
+++.++..+.++
T Consensus 193 ~vi~~i~~l~~~ 204 (467)
T COG2211 193 GVIGVILLLFCF 204 (467)
T ss_pred HHHHHHHHHHHH
Confidence 777666655444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-05 Score=70.83 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-------c-----------cceeeeecCCCCchhH
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-------Q-----------IPIYITEIAPKNVRGA 164 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~i~e~~~~~~r~~ 164 (312)
....+..++.++..|.++||+|||..+.+..+...+..+...+.. . ..+++++....+.|..
T Consensus 69 ~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 69 VTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHH
Confidence 344677888999999999999999999988887777766665544 2 5678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHH-HhhcccCCh
Q 048699 165 YTATNQLLVASGLSVTYLVGTV----VSCLVLALIAAVPCLLQVV-GLFFIPEIA 214 (312)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~-~~~~~pes~ 214 (312)
..++.+..+..+..+++.++.. .+.-..|.+.++..++..+ ..+++||+.
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999888777777777643 3566677777777666554 446788874
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-06 Score=76.52 Aligned_cols=125 Identities=20% Similarity=0.088 Sum_probs=82.2
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHH--------HHHHHHHH--HHHHHHHHH-hcc--
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCA--------MRLSDLFC--ILGWLAIAF-SKQ-- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~--------~~~~~~~~--~~~~~~~~~-~~~-- 148 (312)
.++.+.+|.+..+.++.. ++..++..++.+++|+++||+++|+. +..+.... .+..+.... ..+
T Consensus 286 ~~l~~~~g~s~~~~g~~~---~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (465)
T TIGR00894 286 TFISWVLRVSGKENGLLS---SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY 362 (465)
T ss_pred HHHHHHhCcChHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 355677899999999999 99999999999999999999875421 11111111 111111111 011
Q ss_pred -------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHH
Q 048699 149 -------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV-------VSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 -------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~~w~~~~~~~~~~~~~ 202 (312)
......|..| +.+|.+.++.+....+|+++++.+... .+|+..|.+.++..++
T Consensus 363 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i 441 (465)
T TIGR00894 363 LTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNIL 441 (465)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHH
Confidence 1122235554 589999999999999999998877532 3488888888877777
Q ss_pred HHHHhhcc
Q 048699 203 QVVGLFFI 210 (312)
Q Consensus 203 ~~~~~~~~ 210 (312)
..+...+.
T Consensus 442 ~~i~~~~~ 449 (465)
T TIGR00894 442 CVIFYLIF 449 (465)
T ss_pred HHHHeeee
Confidence 66655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-08 Score=93.01 Aligned_cols=133 Identities=21% Similarity=0.213 Sum_probs=87.0
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH--H----hc---
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA--F----SK--- 147 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~--~----~~--- 147 (312)
.....+.+.+..+.+.. -... ....+...++.+++.++.||+|||+.++.+.++.+++.+..+ . ..
T Consensus 272 ~~~~~~~i~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T PF00083_consen 272 IFYYSPSIFENAGISNS--FLAT---LILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSW 346 (451)
T ss_pred ccccccccccccccccc--cccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445666666676655 2223 444455667777778999999999999888887776666553 1 11
Q ss_pred -c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH-H
Q 048699 148 -Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVP-C 200 (312)
Q Consensus 148 -~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~-~ 200 (312)
+ ...+..|.+|.+.|+++.++......++.++++.+. ...+-...+.+.+++ .
T Consensus 347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~ 426 (451)
T PF00083_consen 347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCL 426 (451)
T ss_pred cccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence 1 236779999999999999988877777777666554 223312333443333 3
Q ss_pred HHHHHHhhcccCCh
Q 048699 201 LLQVVGLFFIPEIA 214 (312)
Q Consensus 201 ~~~~~~~~~~pes~ 214 (312)
+..++..+++||+.
T Consensus 427 i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 427 IAIIFVYFFLPETK 440 (451)
T ss_pred HHHhheeEEEeeCC
Confidence 44445567889985
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=79.67 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=79.9
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh--cc------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS--KQ------------ 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~--~~------------ 148 (312)
++++.+|.++.+.++.. ....++..++.++.|++.||+|||+.+.++.++.+++..+..+. .+
T Consensus 281 ~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 357 (485)
T TIGR00711 281 YLQQVLGYTALQAGLHI---LPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFI 357 (485)
T ss_pred HHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 45566899999999998 99999999999999999999999999988888777776665521 11
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
......+..|+++|+.+.++.+....+|..+|+.+..
T Consensus 358 ~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 358 RGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456678899999999999888888888876653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=77.56 Aligned_cols=47 Identities=23% Similarity=0.080 Sum_probs=37.5
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHH
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLS 132 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~ 132 (312)
.+.+..|++.++.|.+. ++..+..++.+++.|.++||+|.||-++..
T Consensus 33 WL~~~~GLs~~~iG~i~---s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~ 79 (412)
T PF01306_consen 33 WLTQVAGLSGTEIGIIF---SAGSLFALLAQPVYGFISDKLGLKKHLLWF 79 (412)
T ss_dssp HHHHHH---HHHHHHHH---HHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred HHccccCCCHHHHHHHH---HHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence 45566899999999999 999999999999999999999976655433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-05 Score=71.77 Aligned_cols=99 Identities=9% Similarity=0.089 Sum_probs=67.7
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ-------------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (312)
++++.+|.+....++.. ....++.+++.++.+++.||+|+|+.+.++.++.+++.++..+.+.
T Consensus 254 ~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g 330 (448)
T PRK09848 254 YVRYVLNDTGLFTVLVL---VQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIAS 330 (448)
T ss_pred eEeeecCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 34555676554444444 4446778889999999999999999999988877776665554331
Q ss_pred ---------cceeeeecCCC-------CchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ---------IPIYITEIAPK-------NVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ---------~~~~i~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
..++..|..+. +.+|...++.++...+|..+++.+.
T Consensus 331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 22344555443 3458888888888878777765554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-05 Score=70.90 Aligned_cols=98 Identities=23% Similarity=0.262 Sum_probs=70.8
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-----c---------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-----Q--------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-----~--------- 148 (312)
.+.+++|.++.+.+++. +...++..++.++.|++.||+|||+.+..+.++..++.++..... .
T Consensus 232 ~~~~~~g~~~~~~g~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
T TIGR00710 232 VYIDIMGVSPSVFGLLF---ALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMM 308 (385)
T ss_pred HHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45567899988899888 899999999999999999999999988877666555544433211 1
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHH-HHHHHHHHHhh
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLV-ASGLSVTYLVG 184 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~ 184 (312)
...+..|..| ++|+++.++.+... ..|.+.++.++
T Consensus 309 ~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 309 FVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334456555 67899999876554 45666666655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=72.56 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=73.5
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-----c---------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-----Q--------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-----~--------- 148 (312)
++.+++|.+..+.++.. ....++..++.++.|+++||+|+|+.+.++.++..++.++..... +
T Consensus 241 ~~~~~~g~~~~~~g~~~---~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 241 ILISGEQLSSYEYGLLQ---VPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred HHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 44567888888888877 777888999999999999999999998888776655555443321 1
Q ss_pred ---------cce--eeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048699 149 ---------IPI--YITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV 186 (312)
Q Consensus 149 ---------~~~--~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 186 (312)
.+. ......++++||+..+.+++...+|..+|+.+...
T Consensus 318 ~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 366 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKH 366 (406)
T ss_pred HHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 11223345899999999988888888888777643
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.6e-06 Score=76.39 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=75.5
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc-c-----------------
Q 048699 87 DLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK-Q----------------- 148 (312)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~-~----------------- 148 (312)
+.+.+....+++. +...+......++.|++.||+|+|+.+..++++..++.++..+.. +
T Consensus 238 ~~~~~~~~~g~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (395)
T PRK10054 238 DSDFAEKVVAVVL---PVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEII 314 (395)
T ss_pred ccchHHHHHHHHH---HhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 3455555556666 666677777788999999999999998888777766665554432 2
Q ss_pred ----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHH
Q 048699 149 ----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQV 204 (312)
Q Consensus 149 ----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~ 204 (312)
...++.+..|++.|++..+..+ ...+|..+||.++ ++.+....|++.++...+..
T Consensus 315 ~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 315 YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW 377 (395)
T ss_pred HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 1234667789999999887654 3335666666554 55566777766555544433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=71.63 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=74.3
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChh---HHHHH-HHHHHHHHHHHHHHhcc------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQR---CAMRL-SDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk---~~~~~-~~~~~~~~~~~~~~~~~------ 148 (312)
.+.|.+.++.|.+.. .+... .+..++..++ .++++||..|| +.... ..++.++.....+...+
T Consensus 213 ~wlp~~L~~~g~s~~-~~~~~---~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AGDAV---ALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFA 285 (368)
T ss_pred HHHHHHHHHCCCChH-HHHHH---HHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHH
Confidence 345555566676643 44444 5555555544 47777777543 33222 22222222222222111
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHHHHHHHhhccc
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT-VV-SCLVLALIAAVPCLLQVVGLFFIP 211 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~w~~~~~~~~~~~~~~~~~~~~~p 211 (312)
...+.+|.+|++.|+++.++.+....+|+.+++.+.. .. +-...|.+.+++.+++.+....++
T Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~ 365 (368)
T TIGR00903 286 FIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLP 365 (368)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3356789999999999999999988888877776652 22 556667666666666555444434
Q ss_pred C
Q 048699 212 E 212 (312)
Q Consensus 212 e 212 (312)
+
T Consensus 366 ~ 366 (368)
T TIGR00903 366 N 366 (368)
T ss_pred C
Confidence 4
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.4e-06 Score=74.70 Aligned_cols=125 Identities=18% Similarity=0.079 Sum_probs=95.0
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------- 148 (312)
...+++++|+++..+.+... +.+.+...+.-+.+|+++||+|.+|+..+....+.++..+.....+
T Consensus 241 l~~~~~~~fg~~~~~Ag~~a---~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~ 317 (417)
T COG2223 241 LPMYLVTQFGLSPVTAGLIA---FLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVF 317 (417)
T ss_pred HHHHHHHhcCCChhhHHHHH---HHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHH
Confidence 34478889999999999999 9999999999999999999999999999888888887777766642
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhH-HHHHHHHHHHHHHHHHHHH
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVV-SCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~-~w~~~~~~~~~~~~~~~~~ 206 (312)
+..++...+|+ .-|.+.++..+..++|+..-|..- +.. .+...|++.....+++.+.
T Consensus 318 ~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~ 396 (417)
T COG2223 318 VAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVL 396 (417)
T ss_pred HHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44555555554 457788888888888876554443 122 4888888877776666654
Q ss_pred hh
Q 048699 207 LF 208 (312)
Q Consensus 207 ~~ 208 (312)
.+
T Consensus 397 ~~ 398 (417)
T COG2223 397 TW 398 (417)
T ss_pred HH
Confidence 43
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-06 Score=78.44 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=80.9
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc---c----------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK---Q---------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~---~---------- 148 (312)
.+++..+|.++.+.++.. ....++..++.++.|++.||+|+|+.+..+.++..++.++..... +
T Consensus 284 ~~lq~v~g~s~~~ag~~~---~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 360 (495)
T PRK14995 284 QELQFVHGLSPLEAGMFM---LPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMAL 360 (495)
T ss_pred HHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 356677899999999999 999999999999999999999999998888887777665544322 1
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
....+.+..|+++++.+.+++++...+|..+|+.+..
T Consensus 361 ~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 361 LGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG 408 (495)
T ss_pred HHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566788899999999999888888888876653
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=70.94 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=66.5
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
..|.+.++.|.+..+.+... +...++.+++.++.|+++||+ +||+.+.++.++..++.++..+..+
T Consensus 219 ~lp~~~~~~g~~~~~~g~~~---~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (355)
T TIGR00896 219 WLPAILISHGASAATAGSLL---ALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALVL 295 (355)
T ss_pred HHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34545556789988999999 999999999999999999999 5666666666666665554443322
Q ss_pred ----------cceeee-ecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ----------IPIYIT-EIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ----------~~~~i~-e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
....+. +..+++.++...++.+....+|..++|.+.
T Consensus 296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222 223345556666666655555555555444
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.5e-06 Score=84.75 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=82.8
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh--------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS-------------- 146 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~-------------- 146 (312)
..++.+.+|.+..+.+++. +.+.+|.++|+++.|+++|+.++++.+..+.++.+++.+...+.
T Consensus 249 p~~~~~~~g~~~~~~g~~~---~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (1140)
T PRK06814 249 PLLAKETLGGDENVATLFL---AVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI 325 (1140)
T ss_pred HHHHHHHcCCchHHHHHHH---HHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence 4456667899999999999 99999999999999999998887665555544444433322221
Q ss_pred ------cc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHH
Q 048699 147 ------KQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV-----VSCLVLAL 194 (312)
Q Consensus 147 ------~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----~~w~~~~~ 194 (312)
.+ ..+++.+..|++.||+++++.++...+|..+++++... .++...++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~ 405 (1140)
T PRK06814 326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL 405 (1140)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 11 34567899999999999999998888888777766532 24455555
Q ss_pred HHHHH
Q 048699 195 IAAVP 199 (312)
Q Consensus 195 ~~~~~ 199 (312)
+.+++
T Consensus 406 ~~~~~ 410 (1140)
T PRK06814 406 FIALA 410 (1140)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.2e-05 Score=70.53 Aligned_cols=90 Identities=7% Similarity=0.047 Sum_probs=57.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh---c-c------------------
Q 048699 91 SVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS---K-Q------------------ 148 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~---~-~------------------ 148 (312)
+.+..+++. +...++.+++.++.++++||+|+|+.+.++.++.+++.+..... . +
T Consensus 264 ~~~~~~~~~---~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~ 340 (473)
T PRK10429 264 DADLFPYYL---SYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTAL 340 (473)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 344455556 77778889999999999999999999987776655544433221 1 1
Q ss_pred ----cceeeeecCC-------CCchhHHHHHHHHHHHHHHHHHHHh
Q 048699 149 ----IPIYITEIAP-------KNVRGAYTATNQLLVASGLSVTYLV 183 (312)
Q Consensus 149 ----~~~~i~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~ 183 (312)
..++++|..+ .+..|...+...+..-+|..+++.+
T Consensus 341 ~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 341 FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3345666644 2334556677766666666555444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00013 Score=67.61 Aligned_cols=121 Identities=21% Similarity=0.155 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHH-HHHHHHHHHHHHhcc-----------------------cc
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSD-LFCILGWLAIAFSKQ-----------------------IP 150 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~-~~~~~~~~~~~~~~~-----------------------~~ 150 (312)
.++..+.+++..+..++..++.|.++|+-|+||.++... ++..+++.++.+... ..
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444448999999999999999999999777766544 444455555555432 44
Q ss_pred eeeeecCCCCch--------------------------hHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHH
Q 048699 151 IYITEIAPKNVR--------------------------GAYTATNQLLVASGLSVTYLVGT------------VVSCLVL 192 (312)
Q Consensus 151 ~~i~e~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~------------~~~w~~~ 192 (312)
+++.|+.+++.+ ++..+.......+|+++...+.. ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 677888888777 78887777777777776655431 2245777
Q ss_pred HHHHHHHHHHHH-HHhhcccCChH
Q 048699 193 ALIAAVPCLLQV-VGLFFIPEIAQ 215 (312)
Q Consensus 193 ~~~~~~~~~~~~-~~~~~~pes~~ 215 (312)
+.+.++.-++.. ...+++|+.|+
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 877777655544 44566777653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-06 Score=58.13 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=63.7
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
.++.+|.++++.++|.++.+++. +..++|+.+|.+...++.++..+++.+..+.+...+..+.+++.++
T Consensus 11 yTplLP~M~~~~~ls~~~ag~la---saNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLA---SANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999 9999999999999999999988889999999999999998887654
|
Note that many members are hypothetical proteins. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-05 Score=70.35 Aligned_cols=119 Identities=10% Similarity=0.084 Sum_probs=73.2
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------ 148 (312)
.|.+.+++|++.++.+... ....++..++.++.+++.||.+++..+....+......++.....+
T Consensus 240 ~p~~~~~~g~s~~~~g~~~---~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G 316 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVL---LSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHhcCCChhHHHHHH---HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4666778899988888888 8999999999999999999965554333222222222222222111
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQ 203 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~ 203 (312)
...++.+..| +.+++..+.......+|..+|+.++ +..|++..+...+++.++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 2335666666 4455565555455555555555444 5567777777766554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.4e-05 Score=73.77 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=42.6
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc----ChhHHH-HHHHH
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT----GQRCAM-RLSDL 134 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~----Grk~~~-~~~~~ 134 (312)
..++++.+|++..+.|.+. +...+..++..++.|+++||. |||+.+ +++.+
T Consensus 32 ~~y~~~~~gl~~~~~g~~~---~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTML---LLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHHHHcCCCHHHHHHHH---HHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 4577888899999999999 999999999999999999996 777655 44444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-06 Score=76.88 Aligned_cols=100 Identities=25% Similarity=0.283 Sum_probs=77.3
Q ss_pred CCccc-cccccCCc-ccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHH---hcc-----
Q 048699 79 PAESG-ITADLGLS-VREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAF---SKQ----- 148 (312)
Q Consensus 79 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~---~~~----- 148 (312)
...|. +.+++|.+ ..+.++.. +...++..++.++.|++.||+|+|+...+......++.+.... ..+
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (352)
T PF07690_consen 227 FFLPLYLQEVLGFSGPSQAGLLF---SIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLI 303 (352)
T ss_dssp HHHHHHCCHHHHCCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHH
T ss_pred cccchhhhhccCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444 57888888 67888888 9999999999999999999999877766665555544433321 111
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTY 181 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~ 181 (312)
...++.|..|+++||++.++.+....+|..++|
T Consensus 304 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 304 IALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456778999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-06 Score=74.65 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=64.7
Q ss_pred ccccccccCCcccchhHHHHHHHHHH-HHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh-----------cc
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMT-IGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS-----------KQ 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~-----------~~ 148 (312)
.|.+.+++|.+.++.+.+. .... ++.+++.+++|++.||+|||+.+.++.++.+++..+..+. ++
T Consensus 232 ~~~~l~~~g~~~~~~g~~~---~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 232 TTLFLLDMGFSKEEIALVA---KINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HHHHHHHcCCCHHHHHHHh---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 3333344888888888776 6555 6778999999999999999999888777766655433322 11
Q ss_pred ---------------------cceeeeecCCCCchhHHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIAPKNVRGAYTATNQLLV 173 (312)
Q Consensus 149 ---------------------~~~~i~e~~~~~~r~~~~~~~~~~~ 173 (312)
...++.|.+|+++||+..++.+...
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 4457788888888888888776543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=70.14 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=83.9
Q ss_pred cccccC-CcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh-cc-------------
Q 048699 84 ITADLG-LSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS-KQ------------- 148 (312)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~-~~------------- 148 (312)
..++.| .+.+..+.+. ++..++-++.-...+++..|+|.|+++.++.+..++=..+.+.. ++
T Consensus 233 yl~~~gg~~~~~~g~~~---~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~ 309 (400)
T PF03825_consen 233 YLQELGGYSGSTIGILW---ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQL 309 (400)
T ss_pred HHHHcccchhhHHHHHH---HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 344555 5666667666 77777888888999999999999999999988776644444433 11
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHH-HHHHHHHHHHHhh----hhH------HHHHHHHHHHHHHHHHHH
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQL-LVASGLSVTYLVG----TVV------SCLVLALIAAVPCLLQVV 205 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~----~~~------~w~~~~~~~~~~~~~~~~ 205 (312)
...|+.+..|++.|+++.+++.. ..++|..+|..++ +.+ .|...+.+.+++.++..+
T Consensus 310 lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~ 389 (400)
T PF03825_consen 310 LHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILV 389 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 45688999999999999998754 4577777776665 222 355555566655555444
Q ss_pred H
Q 048699 206 G 206 (312)
Q Consensus 206 ~ 206 (312)
.
T Consensus 390 ~ 390 (400)
T PF03825_consen 390 L 390 (400)
T ss_pred H
Confidence 3
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6e-06 Score=76.05 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=92.0
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh---------hHHHHHHHHHHHHHHHHHHHhcc-
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ---------RCAMRLSDLFCILGWLAIAFSKQ- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr---------k~~~~~~~~~~~~~~~~~~~~~~- 148 (312)
+...++.+.+|.+..+.|+.+ ++..+...+..+++|.++||.-+ |..-.++....+++.++.++...
T Consensus 280 y~PtY~~~VL~f~v~~~G~~s---alP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~ 356 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETGFLS---ALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDE 356 (466)
T ss_pred HhhHHHHHHhCCChhhhhHHH---HHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCC
Confidence 344477888999999999999 99999999999999999998755 22222333344444444444332
Q ss_pred --------------------cceeeeecC-CCCchhHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHH
Q 048699 149 --------------------IPIYITEIA-PKNVRGAYTATNQLLVASGLSVTYLVGT-------VVSCLVLALIAAVPC 200 (312)
Q Consensus 149 --------------------~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-------~~~w~~~~~~~~~~~ 200 (312)
...+..-.- .+++-+..+++.+....++++++|.+.. .-.|++.|++.+++.
T Consensus 357 ~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~ 436 (466)
T KOG2532|consen 357 HRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGIL 436 (466)
T ss_pred cchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHH
Confidence 111222222 5778899999999999999999988862 337999999998888
Q ss_pred HHHHHHhhcc
Q 048699 201 LLQVVGLFFI 210 (312)
Q Consensus 201 ~~~~~~~~~~ 210 (312)
++..+.+.+.
T Consensus 437 ~~~~i~f~~f 446 (466)
T KOG2532|consen 437 IVGNIIFLFF 446 (466)
T ss_pred HHhchheeEe
Confidence 7776555443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-05 Score=68.87 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=70.9
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh-hcChhHHHHHHHHHHHHHHHHHHHhcc-----------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD-LTGQRCAMRLSDLFCILGWLAIAFSKQ----------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d-r~Grk~~~~~~~~~~~~~~~~~~~~~~----------- 148 (312)
.|.+.++.+.++.+.++.. +...++...+..+.+++.| |++.++.+..+.++.+++.++.+..++
T Consensus 231 ~p~~~~~~~~~~~~~g~l~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 307 (400)
T PRK11646 231 LPIMVNDIAGSPSAVKWMY---AIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF 307 (400)
T ss_pred hhhhHHhhcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4544445444667777777 7777766666655666665 566666666777666666655555444
Q ss_pred ----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
...++.+..|++.||+..++.+....+|..+|+.+.
T Consensus 308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence 235667889999999999999999999988888776
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00018 Score=69.08 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=91.3
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh-cChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL-TGQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
.....++.+.+|.+.+....+. ..+....-+.++++|+++|+ +||++.++++.++..+|.++.++...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~---~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~ 84 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLF---HTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLH 84 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchH
Confidence 3444566667888877777666 77777777888899999995 69999999999988888776655310
Q ss_pred ---------------------cceeeeecCCCC---chhHHHHHHHHHHHHHHHHHHHhhhh-----------HHHHHHH
Q 048699 149 ---------------------IPIYITEIAPKN---VRGAYTATNQLLVASGLSVTYLVGTV-----------VSCLVLA 193 (312)
Q Consensus 149 ---------------------~~~~i~e~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~-----------~~w~~~~ 193 (312)
..+...|.++++ .|.....++..+.++|+++++.+... .+|...|
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF 164 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence 445556666543 35566667777888888887666422 1488899
Q ss_pred HHHHHHHHHHHHHhh
Q 048699 194 LIAAVPCLLQVVGLF 208 (312)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (312)
.+.++..+++++...
T Consensus 165 ~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 165 GVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777665543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.5e-06 Score=76.32 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=106.4
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC--hhHHHHHHHHHHHHHHHHHHHhcc-------
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG--QRCAMRLSDLFCILGWLAIAFSKQ------- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G--rk~~~~~~~~~~~~~~~~~~~~~~------- 148 (312)
...+|.+.+..+.+..+.+.+. +...+...+|-++.|+++|+.. ++.+..++.++.+++.+.+.+.++
T Consensus 318 ~~~l~~~~~~~g~~~~~aa~l~---Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~ 394 (509)
T KOG2504|consen 318 FVYLPSYAKSLGLSSNDAAFLL---SIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVF 394 (509)
T ss_pred HHHHHHHHhhcCCChhhhHHHH---HHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3456667778999999999999 9999999999999999999988 556666777777777767777666
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV-----SCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
.+..+.|....++-..+.|+..++.+++.++|+.++..+ +|...|++.++..+++.+.++.
T Consensus 395 ~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 395 SILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 335678889999999999999999999999998887432 4888899988888777776666
Q ss_pred cc
Q 048699 210 IP 211 (312)
Q Consensus 210 ~p 211 (312)
.|
T Consensus 475 ~~ 476 (509)
T KOG2504|consen 475 LR 476 (509)
T ss_pred hH
Confidence 55
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=67.30 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=71.8
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhc--c--------------
Q 048699 85 TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSK--Q-------------- 148 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~--~-------------- 148 (312)
+..++.+ ...+... ....++..++.++.++++||+|+|+.+..+.++.+++.++..+.. +
T Consensus 253 ~~vl~~~-~~~~~~~---~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~ 328 (428)
T PF13347_consen 253 TYVLGNE-GLISIFM---LIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIG 328 (428)
T ss_pred HHHhcCc-hhhHHHH---HHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhh
Confidence 3334544 5566777 889999999999999999999999999999999999888877775 3
Q ss_pred -------cceeeeecCC-------CCchhHHHHHHHHHHHHHHHHHHHh
Q 048699 149 -------IPIYITEIAP-------KNVRGAYTATNQLLVASGLSVTYLV 183 (312)
Q Consensus 149 -------~~~~i~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~ 183 (312)
...+++|..+ ++..|...++.....-+|..++..+
T Consensus 329 ~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 329 YGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred hcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 3456666665 3445778888877776666665544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-05 Score=70.62 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=71.8
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------- 148 (312)
+++++.+|.++.+.+++. +...++.++++++.+++.||.++|+.+..+.++ ++..++.++.++
T Consensus 230 ~~~~~~lg~s~~~~G~~~---~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~ 305 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQ---AVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGA 305 (393)
T ss_pred HHHHHHcCCChhHHHHHH---HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345667899999999999 999999999999999999999998877766433 222222222221
Q ss_pred --------cceeeeecCCCCc-hhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 --------IPIYITEIAPKNV-RGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 --------~~~~i~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
....+.+..|++. +|++.++.+....+|..++..+.
T Consensus 306 ~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~ 350 (393)
T PRK11195 306 LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLY 350 (393)
T ss_pred hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence 2344566655554 79999999888888888776665
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=68.48 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=79.9
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh----------cc------
Q 048699 85 TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS----------KQ------ 148 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~----------~~------ 148 (312)
.+.+|.++.+.|... ....++.+++..+.+++.+|++.|+++.++.++.+++.+..... ++
T Consensus 280 ~~~lG~s~~~~G~~~---~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~ 356 (468)
T TIGR00788 280 TQCLPGGPSFSGMSK---VVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLG 356 (468)
T ss_pred cccCCCCcchhhhHH---HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeee
Confidence 356899999999999 88899999999999999999999999999999888876443211 11
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
...++.+..|++.+|+..++.....++|..+++.++
T Consensus 357 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred hhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 245668899999999999999888888888877655
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.4e-05 Score=69.08 Aligned_cols=106 Identities=12% Similarity=-0.020 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH-Hhc-----c---------------------cceeeee
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA-FSK-----Q---------------------IPIYITE 155 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~-~~~-----~---------------------~~~~i~e 155 (312)
.+..+...++.+++|+++||+|+|+++.++.+...++..... ..+ + +..++..
T Consensus 293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~ 372 (462)
T PRK15034 293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV 372 (462)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence 445677888889999999999999999888876665543211 111 0 2334555
Q ss_pred cCCC---------------------CchhHHHHHHHHHHHHHHHHHHHh-hhhH----HHHHHHHHHHHHHHHHHHHhh
Q 048699 156 IAPK---------------------NVRGAYTATNQLLVASGLSVTYLV-GTVV----SCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 156 ~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~-~~~~----~w~~~~~~~~~~~~~~~~~~~ 208 (312)
.+|+ ++-|.+.|+.+....+|+++.|.+ +... ++...|+...+..+++.++.+
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 5553 134566777777777777776644 3222 356667666666666555443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.5e-05 Score=69.19 Aligned_cols=57 Identities=9% Similarity=-0.074 Sum_probs=48.0
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 048699 85 TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIA 144 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~ 144 (312)
++.+|.++.+.++.. ..+.++..+|.++.|++.||+|+|+++..+.++..++.++..
T Consensus 287 ~~~~g~s~~~ag~~~---~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~ 343 (438)
T PRK10133 287 EEIPGMTAGFAANYL---TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA 343 (438)
T ss_pred hhcCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999 999999999999999999999999998887766555444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=70.72 Aligned_cols=117 Identities=11% Similarity=0.046 Sum_probs=86.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cc
Q 048699 92 VREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IP 150 (312)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 150 (312)
....|.+. ++.-+.-++.-.+..++.+|+|.|+.++++..+..+=.++++++++ .-
T Consensus 258 ~~~~G~l~---s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 258 NQMYGYLW---SVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHH---HHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666 8888999999999999999999999999999998888888888877 44
Q ss_pred eeeeecCCCCchhHHHHHH-HHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hccc
Q 048699 151 IYITEIAPKNVRGAYTATN-QLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFIP 211 (312)
Q Consensus 151 ~~i~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~p 211 (312)
-|+.+.+|++..++...+. +.+..+|..+.+.++ +.+|.+..|++.+.+.++..+.. +.++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 6889999999988888764 566666666554443 66788888888777665554443 4443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-05 Score=53.67 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=49.5
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHH
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFC 136 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~ 136 (312)
+...+..+...++.|++..+.|.+. ++..+...++++++|.++||+|+++.++....++
T Consensus 17 g~~~Pfl~~~~~~~Gl~~~~iGil~---~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 17 GCLYPFLPLYLKQLGLSPSQIGILS---AIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHhhhhHhhhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3345556666677999999999999 9999999999999999999999998887765543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=66.50 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh-cc----------------------cceeeeecCC-
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS-KQ----------------------IPIYITEIAP- 158 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~-~~----------------------~~~~i~e~~~- 158 (312)
....++.+++.+++++++||+|+|+.+.++.++..++.+...+. .+ ...+++|..+
T Consensus 271 ~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~ 350 (444)
T PRK09669 271 VTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDY 350 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 56677788899999999999999999887776555433322221 11 3345556553
Q ss_pred ------CCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 159 ------KNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 159 ------~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
++..|...+....+..+|..+++.++
T Consensus 351 ~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 351 EEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred hhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 23345666777666666666665544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.2e-05 Score=71.98 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=79.3
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh----cChhHHHHHH-HHHHHHHHHHHHHhcc---------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL----TGQRCAMRLS-DLFCILGWLAIAFSKQ--------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~Grk~~~~~~-~~~~~~~~~~~~~~~~--------- 148 (312)
.+....|++....+.+- ...-+.+.+.+++.|..+|| |||||.++.. .+...++.++..++.+
T Consensus 57 Pyl~~lGvphk~~S~iw---~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~ 133 (498)
T KOG0637|consen 57 PYLQSLGVPHKWSSIIW---LCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE 133 (498)
T ss_pred HHHHHcCCCcccccccc---cccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc
Confidence 34456788888777777 77778888899999999995 8988877654 5555667777666655
Q ss_pred -----------------------------cceeeeecCCCCchhH-HHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 048699 149 -----------------------------IPIYITEIAPKNVRGA-YTATNQLLVASGLSVTYLVGTVVSCLV 191 (312)
Q Consensus 149 -----------------------------~~~~i~e~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~~w~~ 191 (312)
.-+++.|...++.+.+ +++.+..+.++|..+|..++.+.+|+-
T Consensus 134 ~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 134 RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence 2256677776666666 888999999999999988887666653
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0024 Score=58.46 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=49.1
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 85 TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
+-.+|.+.....+.. .....+.+++.++..++++|+|+|+++.++.++..++.++..+.+.
T Consensus 264 ~y~lg~~~l~~~~~~---~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~ 324 (467)
T COG2211 264 TYVLGDPELFAYLLL---LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA 324 (467)
T ss_pred EEEcCChHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333555555556666 7777777788999999999999999999999999999988877764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=61.97 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=73.8
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh-cChhHHHHHHHHHHHHHHHHHHHhc---c
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL-TGQRCAMRLSDLFCILGWLAIAFSK---Q 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~---~ 148 (312)
++........+++.+.+++.++..++. +.+..-.++-++++|++.|| +|-|..-++-++...+|-++.+... .
T Consensus 59 cyd~p~alq~~fk~d~ni~~akftLlY---svYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~a 135 (459)
T KOG4686|consen 59 CYDAPGALQIDFKLDSNIEYAKFTLLY---SVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHA 135 (459)
T ss_pred ecCCchhhhhhhhcccccceeeeeeee---eeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 555555556677777888888888888 99999999999999999996 5666544444444444444333211 1
Q ss_pred ---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSV 179 (312)
Q Consensus 149 ---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~ 179 (312)
...|+.-++..++-+.++|+......+|+.+
T Consensus 136 Fw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 136 FWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV 187 (459)
T ss_pred HHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence 3468888999999999999887777777654
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00081 Score=63.54 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh-hHHHHHHHHHHHHHHHHHHHhcc-----------------------c
Q 048699 94 EDLLIEASLLLMTIGAISGSLINGKIADLTGQ-RCAMRLSDLFCILGWLAIAFSKQ-----------------------I 149 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr-k~~~~~~~~~~~~~~~~~~~~~~-----------------------~ 149 (312)
+.++.. ....++..+|+++.|.+..+++| |+.++++.+++.++.-+++.... .
T Consensus 350 ~~~~~s---~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~ 426 (599)
T PF06609_consen 350 EIGWIS---SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPA 426 (599)
T ss_pred eeehhh---hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHH
Confidence 567888 88999999999999999998887 45555666666554444433322 2
Q ss_pred ceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-------------------------------------------
Q 048699 150 PIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV------------------------------------------- 186 (312)
Q Consensus 150 ~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------------------------------------------- 186 (312)
....+-..|++.-|.+.++......+|+.+|..+...
T Consensus 427 ~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~ 506 (599)
T PF06609_consen 427 IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEAL 506 (599)
T ss_pred HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHH
Confidence 3344556788889999998888887777766444200
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHhhcccCChHhH
Q 048699 187 -----------------------VSCLVLALIAAVPCLLQVVGLFFIPEIAQSI 217 (312)
Q Consensus 187 -----------------------~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~ 217 (312)
.++|+.++....+++++++..+++++..+++
T Consensus 507 ~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 507 AAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence 0478889988888999988888888765544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00053 Score=62.18 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=66.0
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHH---HH--hcc-------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAI---AF--SKQ------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~---~~--~~~------- 148 (312)
.|.+.+++|.+..+.++.. ....++..+|.++.+++.||+|+|+.+....+...++.+.. .. .++
T Consensus 226 ~p~~~~~~g~s~~~~g~~~---~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 226 SPFILEQMGYSPADIGLSY---VPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred hHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4545566889988888877 78888999999999999999999986654443333322211 11 011
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT 185 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 185 (312)
......+..| ++||++.++.+.....+..+++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g 352 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123334444 57999999998776666666655543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.4e-05 Score=68.11 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=47.0
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLA 142 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~ 142 (312)
..++++.+|.+..+.++.. +...++..++.+++|+++||+|||+.+..+..+...+..+
T Consensus 249 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 307 (366)
T TIGR00886 249 AMFFKDQFGLSKVTAGAYA---SLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFL 307 (366)
T ss_pred HHHHHHHcCCcHHHHHHHH---HHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHH
Confidence 3456677899998999888 8899999999999999999999988777666555444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=58.15 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh--------------------
Q 048699 127 CAMRLSDLFCILGWLAIAFSKQIPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV-------------------- 186 (312)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------------------- 186 (312)
..++++.++.+.|..+.-.+ ...|+.+..+++++++.+++.+.++++|.+++|.++..
T Consensus 11 ~~~l~~~f~~g~G~~~lq~~--~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 11 VLFLGALFVLASGLTILQVA--ANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHhhHHHHHhh--HHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 34444444444443322221 66788888899999999999999999999999988731
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 048699 187 VSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 187 ~~w~~~~~~~~~~~~~~~~~~ 207 (312)
..|++++++.+.+.++..+.+
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899886655544443333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=59.70 Aligned_cols=102 Identities=17% Similarity=0.040 Sum_probs=66.8
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHH-HHHHHHHHHHHh--cc-----------
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDL-FCILGWLAIAFS--KQ----------- 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~-~~~~~~~~~~~~--~~----------- 148 (312)
.+.+.+|.+..+.++.. ....++..+++++.+++.||+|++........ +..+........ .+
T Consensus 233 ~~~~~~g~~~~~~~~~~---~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (394)
T PRK11652 233 LMGAVLGLSSMTVSILF---ILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALF 309 (394)
T ss_pred HHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 44555888888888888 88889999999999999999985443322221 111111111110 00
Q ss_pred ----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 048699 149 ----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVVS 188 (312)
Q Consensus 149 ----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 188 (312)
...+..|..| ++++...++.+....+|..+++.++....
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 310 FFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2334456665 57899999999888999999888875553
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=59.37 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=68.3
Q ss_pred cccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC-----hhHHHHH-HHHHHHHHHHHHHHh-----c-----
Q 048699 84 ITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG-----QRCAMRL-SDLFCILGWLAIAFS-----K----- 147 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G-----rk~~~~~-~~~~~~~~~~~~~~~-----~----- 147 (312)
+..|++++..-.+... ++..+... ..+.+|+.+|+.+ ||..+++ |.++...+..+..++ .
T Consensus 6 MIvEL~vpA~lv~~lv---al~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 6 MIVELGVPAWLVALLV---ALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred HHHHhccHHHHHHHHH---HHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 4566777766666666 66665554 5889999999999 7766655 455555444443322 2
Q ss_pred --c-------------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 148 --Q-------------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 148 --~-------------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
+ ..+.+.|..|+++|+++.++......+|.+++..+.
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 346779999999999999998887778887776665
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=61.64 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhH----HhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------------------
Q 048699 95 DLLIEASLLLMTIGAISGSLIN----GKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------- 148 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~----g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------- 148 (312)
.++.. ++..+...+..++. +++.+|++..+.+.+|.++.+++.+..+...+
T Consensus 318 ~~~~~---s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ 394 (500)
T PRK09584 318 PEQYQ---ALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSI 394 (500)
T ss_pred HHHHH---HHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence 44555 55555555555555 66666777777788888888888766443311
Q ss_pred --------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHHHHH
Q 048699 149 --------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV--------------VSCLVLALIAAVPCLLQ 203 (312)
Q Consensus 149 --------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--------------~~w~~~~~~~~~~~~~~ 203 (312)
...++.+..|++.||+.+|++.+...+|..++..+... .+..+.|...++.+++.
T Consensus 395 ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 471 (500)
T PRK09584 395 GELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVI 471 (500)
T ss_pred HHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 44677888999999999999988887887776555421 12556666666554443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=9.1e-05 Score=67.74 Aligned_cols=122 Identities=18% Similarity=0.125 Sum_probs=95.3
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------------
Q 048699 85 TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------- 148 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------- 148 (312)
.++.+..+.-.|... .....|-++.-++.+++..|+|+-+++.+++.+.++=.+......|
T Consensus 398 led~~~~~~LfGv~~---a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~a 474 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVS---ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHA 474 (618)
T ss_pred HhhcCCcceeeeehh---hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHH
Confidence 456666666677777 8888888999999999999999999999888877776666665555
Q ss_pred -----cceeeeecCCCCchhHHHHHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 -----IPIYITEIAPKNVRGAYTATNQL-----LVASGLSVTYLVGTVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 -----~~~~i~e~~~~~~r~~~~~~~~~-----~~~~g~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...|++...||+.|+++.++.+. +.++|+++|..+...++-|..|.+.++.+++.++....
T Consensus 475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999997744 44777888877777788888888877777666555443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=55.84 Aligned_cols=124 Identities=27% Similarity=0.300 Sum_probs=81.8
Q ss_pred eeeCCCccccccccCCcc--cchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 75 GYSSPAESGITADLGLSV--REDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
.......+.+..+++.+. ...++.. +...++..++.++.|.++||+|||+.+..+.....++.++.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 19 GLLSPALPLLLSTLSLSSGRLLYGLLL---SAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred chHHHHHHHHHHHcCCCchhHHHHHHH---HHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 333444555555555444 3667788 9999999999999999999999998887776543333333322211
Q ss_pred -------------------cceeeeecCCC-CchhHHHHHHHH-HHHHHHHHHHHhhh------hHHHHHHHHHHHHHHH
Q 048699 149 -------------------IPIYITEIAPK-NVRGAYTATNQL-LVASGLSVTYLVGT------VVSCLVLALIAAVPCL 201 (312)
Q Consensus 149 -------------------~~~~i~e~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~------~~~w~~~~~~~~~~~~ 201 (312)
...++.|..|+ +.|+...+.... ...+|..+++.++. ..+|++.+.+......
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44677888877 678888887766 46667777765542 2368886666555543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00092 Score=62.11 Aligned_cols=120 Identities=11% Similarity=-0.039 Sum_probs=73.8
Q ss_pred eeeeeCCCccccccc-cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh----cChhHHHHHHHHHHHH-HHHHHHHh
Q 048699 73 QIGYSSPAESGITAD-LGLSVREDLLIEASLLLMTIGAISGSLINGKIADL----TGQRCAMRLSDLFCIL-GWLAIAFS 146 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~Grk~~~~~~~~~~~~-~~~~~~~~ 146 (312)
..+.+....|.+.++ .|.+..+.+.+. ..+.++.+++.+++|+++|| ..+|..+.....+..+ +.+.....
T Consensus 288 v~~~~~~~lpl~l~~~~~~s~~~a~~ls---~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~ 364 (495)
T KOG2533|consen 288 VNYGFSYWLPLYLKSNGGYSELQANLLS---TPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA 364 (495)
T ss_pred ccccHHHHHHHHHHcCCCcChHHhcccc---chHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334345566755555 568888899999 99999999999999999999 6677776666555444 42433333
Q ss_pred cc---------------------cceeeeecCCCCch-hHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHH
Q 048699 147 KQ---------------------IPIYITEIAPKNVR-GAYTATNQLLVASGLSVTYLVG-----TVVSCLVLALI 195 (312)
Q Consensus 147 ~~---------------------~~~~i~e~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~-----~~~~w~~~~~~ 195 (312)
.. ....+++...++.| -...++...+.+.+.++++.+- ..+.|...|..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 365 AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 21 22233444444444 3444455555555555554442 33467776643
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0039 Score=54.75 Aligned_cols=127 Identities=17% Similarity=0.088 Sum_probs=87.1
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHHHHHHHhcc--------
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGWLAIAFSKQ-------- 148 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~~-------- 148 (312)
-.++|.+..|.|+|..+.|+.. +...+..+..++....+++|. .+|+..+...+++.++.+.+.+.+.
T Consensus 228 ~~WLP~ili~~G~sa~~aG~ll---sl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~ 304 (395)
T COG2807 228 IGWLPAILIDRGLSAAEAGSLL---SLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWAL 304 (395)
T ss_pred HHHHHHHHHHcCCCHHHhhhHH---HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567888889999999999999 999999999999999999965 4666666677777777777766655
Q ss_pred ------------cceeeeecC-CCCchhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHh
Q 048699 149 ------------IPIYITEIA-PKNVRGAYTATNQLLVASGLSVTYLVGTVV-----SCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 ------------~~~~i~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~ 207 (312)
....+.... .++.-+...++.+....+=...||.+.... +|+......+...++..+.-
T Consensus 305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 222333333 344445555565555444445566665332 68888777666655554433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.01 Score=54.89 Aligned_cols=103 Identities=10% Similarity=-0.040 Sum_probs=72.2
Q ss_pred ccccccccCCc-----ccchhHHHHHHHHHHHHHHHH-HHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh--c-----
Q 048699 81 ESGITADLGLS-----VREDLLIEASLLLMTIGAISG-SLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS--K----- 147 (312)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ig-~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~--~----- 147 (312)
+..++|.+..+ .+...++- +...+...+. .++.+++++|++|++.+.+..........+.++. +
T Consensus 26 LR~lKD~lvv~~~~~gae~i~fLk---~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 26 LRDTKDTLVVTAKGSGAEIIPFLK---TWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred HHhhhhheeecccCCchhhHHHHH---HHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 44566666553 34556665 6665555555 8899999999999998877655555444443332 0
Q ss_pred -------------------------c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHH
Q 048699 148 -------------------------Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTY 181 (312)
Q Consensus 148 -------------------------~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~ 181 (312)
+ ...+.+|..+.++-.+..++.+++.++|.++++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg 182 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG 182 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 335678899988889999999999999999988
Q ss_pred Hhhhh
Q 048699 182 LVGTV 186 (312)
Q Consensus 182 ~~~~~ 186 (312)
.+...
T Consensus 183 ~~~~~ 187 (472)
T TIGR00769 183 RTIKY 187 (472)
T ss_pred HHHHH
Confidence 77644
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0061 Score=56.53 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHH
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDL 134 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~ 134 (312)
.+.+. ..+.++.+++.+++++++||+|+|+.+..+.+
T Consensus 265 ~~~~l---~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~ 301 (460)
T PRK11462 265 FVAFL---TTYCVGNLIGSALAKPLTDWKCKVTIFWWTNA 301 (460)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 34555 77888899999999999999999988764443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0025 Score=59.34 Aligned_cols=109 Identities=22% Similarity=0.152 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh-----hHH--HHHHHHHHHHHHHHHHHh---------cc----------
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIADLTGQ-----RCA--MRLSDLFCILGWLAIAFS---------KQ---------- 148 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr-----k~~--~~~~~~~~~~~~~~~~~~---------~~---------- 148 (312)
.+++. ++..+..++.+++..++..+.+| +.. +.+|+++.+++.+..++. .+
T Consensus 314 ~~~~~---~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~ 390 (475)
T TIGR00924 314 VIWFQ---SLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLF 390 (475)
T ss_pred HHHHH---hhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHH
Confidence 45667 77777777777776554334433 333 366777777776665541 12
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHH
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV----SCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~ 206 (312)
...++.+..|++.||+.++++.+...+|..+++.+.... +|...+...++.+++..+.
T Consensus 391 ~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (475)
T TIGR00924 391 QTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVV 463 (475)
T ss_pred HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999998887776432 5777776666555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0029 Score=59.19 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhH-------HHHHHHHHHHHHHHHHH-----Hhc-----c-----------------
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRC-------AMRLSDLFCILGWLAIA-----FSK-----Q----------------- 148 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~-------~~~~~~~~~~~~~~~~~-----~~~-----~----------------- 148 (312)
++..+..++.+++.+++.||+|+|+ -+.+|.++.+++.+..+ ... +
T Consensus 316 ~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~ 395 (489)
T PRK10207 316 ALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELF 395 (489)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 6666778788999999999999986 36667776666654321 111 1
Q ss_pred ----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
...++.+..|++.+|.+++++.+...+|..++..++
T Consensus 396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999988888888887766
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0025 Score=58.24 Aligned_cols=46 Identities=7% Similarity=-0.017 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
+.+..+..+|.++.++++||+++|+++.++.++..+..++..+.++
T Consensus 276 ~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~ 321 (410)
T TIGR00885 276 IGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG 321 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6666888899999999999999999988888877777776666544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.022 Score=52.69 Aligned_cols=101 Identities=17% Similarity=0.120 Sum_probs=83.3
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHH-hhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLING-KIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g-~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------- 148 (312)
.-++...++.+..+.+... +...+...+++++.. .+...+|-|+.+.+|...-.+.....+++++
T Consensus 265 ~~yl~~~f~w~~~~~s~~~---~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~ 341 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLL---SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVV 341 (463)
T ss_pred EEEEeeecCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHH
Confidence 3456777999999999888 888888888887777 7888899999999999999999988888876
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
..++++-+..++++|++.++......+..++++.+-
T Consensus 342 ~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 342 ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence 334667778899999999999888888888777664
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0031 Score=59.41 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------------------cceeeeecCC
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------------------IPIYITEIAP 158 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~i~e~~~ 158 (312)
..............+.+.|++|||.....+.++..++.+..++... ...+..|.+|
T Consensus 357 ~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p 436 (521)
T KOG0255|consen 357 TLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIP 436 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444455566666789999999999999999998888888776553 4567799999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhHHH--H-HHHHHHHHHHHH-HHHHhhcccCChH
Q 048699 159 KNVRGAYTATNQLLVASGLSVTYLVGTVVSC--L-VLALIAAVPCLL-QVVGLFFIPEIAQ 215 (312)
Q Consensus 159 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~w--~-~~~~~~~~~~~~-~~~~~~~~pes~~ 215 (312)
+..|+.+.+...+...+|.++++.+...... . ..+.+.+..+.+ .++..+++||+..
T Consensus 437 t~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 437 TVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 9999999999999999999999888733321 1 122222333333 3444478899854
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.041 Score=49.31 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=87.9
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh-hcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD-LTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d-r~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
.-|+=-+.||++..+...+. .....|..+|-.+.|++.. |.++++.-.+++....++..+..++..
T Consensus 231 LEPygg~Vfgmsv~eTT~Lt---a~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~ 307 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLT---AFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPG 307 (403)
T ss_pred cCCchhHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 34566677999999999999 9999999999999998877 778888887888877776655444322
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----h----------hHHHHHHHHHHHHHH
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----T----------VVSCLVLALIAAVPC 200 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~----------~~~w~~~~~~~~~~~ 200 (312)
....+.+...+++.|..+|.++....++.-++..++ + ..+|-..|.+.++..
T Consensus 308 ~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll 387 (403)
T PF03209_consen 308 VFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLL 387 (403)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 334556778888899999999776655444443333 1 125666777766665
Q ss_pred HHHHHH
Q 048699 201 LLQVVG 206 (312)
Q Consensus 201 ~~~~~~ 206 (312)
+++..+
T Consensus 388 ~~a~~l 393 (403)
T PF03209_consen 388 LAALVL 393 (403)
T ss_pred HHHHHH
Confidence 555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00072 Score=59.86 Aligned_cols=126 Identities=17% Similarity=0.073 Sum_probs=80.6
Q ss_pred eCCCccc-cccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC--hhHHHHHHHHHHHHHHHHHHHhcc-----
Q 048699 77 SSPAESG-ITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG--QRCAMRLSDLFCILGWLAIAFSKQ----- 148 (312)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G--rk~~~~~~~~~~~~~~~~~~~~~~----- 148 (312)
.-+.++. ..+.+..+.-+.|..- .-..+.+.+|+.+.|.++||++ |-.....+.+..++.+....++++
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~f---Lp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~ 365 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAF---LPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW 365 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeee---cccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence 4455554 4445663333666666 7778899999999999999999 433333444444544444455544
Q ss_pred -----------------cc--eeeeecCCCC---chhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q 048699 149 -----------------IP--IYITEIAPKN---VRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 -----------------~~--~~i~e~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~ 202 (312)
.| .++.+.-..+ .-|...++...++.+|..+||.++ ..+|++|...+.++..++
T Consensus 366 vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 366 VPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 11 2233332233 557888888889999999888887 445888887777776655
Q ss_pred HHH
Q 048699 203 QVV 205 (312)
Q Consensus 203 ~~~ 205 (312)
-.-
T Consensus 446 yap 448 (464)
T KOG3764|consen 446 YAP 448 (464)
T ss_pred HHH
Confidence 443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.097 Score=48.00 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=40.4
Q ss_pred ccccccCCc---ccchhHHHHHHHHHHH-HHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh
Q 048699 83 GITADLGLS---VREDLLIEASLLLMTI-GAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS 146 (312)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~ 146 (312)
.+.+.+.++ ++..+++- +..-+ +.++..++.+++++++.|.+++-..+.......+++++.
T Consensus 48 ~lKDslvv~~~gae~I~FlK---~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLK---TWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred HhhhheEeecCcchhhHHHH---HHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 34444444 55555 677888899999999999999877666666666665553
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0044 Score=54.01 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------------cceeeeecCCCCchhH
Q 048699 105 MTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------------------IPIYITEIAPKNVRGA 164 (312)
Q Consensus 105 ~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~i~e~~~~~~r~~ 164 (312)
..-..+++-++.-.+.|-.--|+++++-.+...+...+..+.++ -++|+-+..+++++-+
T Consensus 51 wTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqr 130 (433)
T KOG3810|consen 51 WTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKR 130 (433)
T ss_pred hhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHH
Confidence 33455566667778999888888888766666666666666555 5678888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhcCCHHHHHHHHHHHhC
Q 048699 165 YTATNQLLVASGLSVTYLVG------TVVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMG 238 (312)
Q Consensus 165 ~~~~~~~~~~~g~~~~~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (312)
+.+......-.|-..|..++ ...++...-.+......++....+++|..+|-+ .-+.++++ ..
T Consensus 131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl---~f~~~~~~--~~------ 199 (433)
T KOG3810|consen 131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL---YFHRLEDK--IS------ 199 (433)
T ss_pred HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh---hhhccccc--ce------
Confidence 99888766666555555444 223445444555444555556667777666433 22222211 11
Q ss_pred CCCChhhhhHHHHHhhhhhcccccc---chhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHHHHc
Q 048699 239 KTADISMESPDIRDYTKTFKNDSRA---GIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIFAAA 306 (312)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (312)
..+.++...+.+. .+..+. .+..-+++-+.++.++.+.+|++...+|++-..+|.-.+-++.
T Consensus 200 -----v~~~e~~~~~~~~-~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~ 264 (433)
T KOG3810|consen 200 -----VGDLEEMNPQASY-MSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV 264 (433)
T ss_pred -----eccchhcCccchh-hHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh
Confidence 0111111000000 000001 1222223356677788899999999999999999987776654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0034 Score=57.73 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=83.0
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-----ChhHHHHHHHHHHHHHHHHHHHhcc------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-----GQRCAMRLSDLFCILGWLAIAFSKQ------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----Grk~~~~~~~~~~~~~~~~~~~~~~------ 148 (312)
..+.+++++|+++.+..... +...+-.. .-++.|.++|-+ .||+-++++.++..++.+..+..+.
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~---~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLS---SLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHH---HHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 35678899999999988777 66665554 456889999976 3566666677776555555544332
Q ss_pred -------------------cceeeeecC--CCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH
Q 048699 149 -------------------IPIYITEIA--PKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQ 203 (312)
Q Consensus 149 -------------------~~~~i~e~~--~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~ 203 (312)
.-....|.. .++.||...+.......+|.+++..++ ...+++..|.+.+++.++.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 223444544 223377777777777778888776665 3446788888877776665
Q ss_pred HHHhhcc
Q 048699 204 VVGLFFI 210 (312)
Q Consensus 204 ~~~~~~~ 210 (312)
.+..+++
T Consensus 168 ~~~~~~~ 174 (433)
T PF03092_consen 168 LIVALFL 174 (433)
T ss_pred HHHHHHh
Confidence 5444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.026 Score=50.73 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHH-HHHHHHHHHHHHHHHhcc------------------------c
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMR-LSDLFCILGWLAIAFSKQ------------------------I 149 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~-~~~~~~~~~~~~~~~~~~------------------------~ 149 (312)
.++..+..++..+..++-+++.|.++|+.|+||.+. +...+..++.++..+.++ .
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 344444458888999999999999999999766554 445555556666666554 2
Q ss_pred ceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----------------------hhHHHHHHHHHHHHHHHHHHHHh
Q 048699 150 PIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----------------------TVVSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 150 ~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----------------------~~~~w~~~~~~~~~~~~~~~~~~ 207 (312)
.+++.+..+++.-++..+.-.....+|+.+.-.+. +...-|..+.+.++..++..+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 34566667776666665544333334443332221 12246777777776665555443
Q ss_pred -hcccC
Q 048699 208 -FFIPE 212 (312)
Q Consensus 208 -~~~pe 212 (312)
+..|+
T Consensus 217 ~~~v~~ 222 (438)
T COG2270 217 ILNVHD 222 (438)
T ss_pred Hhcccc
Confidence 33443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=44.40 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------------cceeeeecCCCCch
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------------------IPIYITEIAPKNVR 162 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~i~e~~~~~~r 162 (312)
++.+....+++++.+.+.+++|.|+.++++.+...+-......... ...++.+..+++.|
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~ 123 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI 123 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence 7778888899999999999999999999998887755443322111 23455666666666
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 048699 163 GAYTATNQLLVASGLSVTY 181 (312)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~ 181 (312)
++..++.-.....+.++|.
T Consensus 124 ~~~~~ifw~i~~~s~i~G~ 142 (156)
T PF05978_consen 124 GRNTGIFWAIFQSSLIFGN 142 (156)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 6666655444444444443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.12 Score=47.15 Aligned_cols=42 Identities=7% Similarity=-0.012 Sum_probs=31.5
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhH
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRC 127 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~ 127 (312)
.+++.+|.+..+.++.. .....+..+++.+.+.+.++.++++
T Consensus 244 ~l~~~~g~s~~~~gl~~---~~~~~~~~i~~~l~~~~~~~~~~~~ 285 (413)
T PRK15403 244 ILIDAGGMTTSQFAWTQ---VPVFGAVIVANAIVARFVKDPTEPR 285 (413)
T ss_pred HHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCchh
Confidence 45666799999999888 8888888888888888765444433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.02 Score=51.13 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=57.1
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
.....+....++.+..|++..+.+... +.+..+.++|-+++.++..|+...+.+.+..++..+-++..+++.+
T Consensus 252 Eva~gsfl~~y~~~~~g~~~~~aa~~~---s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g 324 (422)
T COG0738 252 EVAIGSFLVSYLEELLGLNEQQAAYYL---SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG 324 (422)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444445555655888889999999 9999999999999999999999999888877776666666666655
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.16 Score=46.69 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhHHhhhh---hcChhHHHHHHHHHHHHHHHHHHHhc
Q 048699 103 LLMTIGAISGSLINGKIAD---LTGQRCAMRLSDLFCILGWLAIAFSK 147 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~d---r~Grk~~~~~~~~~~~~~~~~~~~~~ 147 (312)
....+|..+++.+.+.+.+ ++||++.+.++.++..++.++.....
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~ 333 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF 333 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc
Confidence 5566666777777777775 57899999999888888877765543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.055 Score=49.83 Aligned_cols=122 Identities=21% Similarity=0.214 Sum_probs=82.7
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh----------cc-----------
Q 048699 90 LSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS----------KQ----------- 148 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~----------~~----------- 148 (312)
.++...+.+. .+..++.++|..+.....-+..-|+++.++.++.++..+..... ++
T Consensus 252 fs~~f~~~~~---~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~ 328 (433)
T PF03092_consen 252 FSPSFYGTLS---IVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILE 328 (433)
T ss_pred cCHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHH
Confidence 6677777777 88888888888888887777788888887777666555432111 01
Q ss_pred ----------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----H--------HHHHHHHHHHHHHHHHHHH
Q 048699 149 ----------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV----V--------SCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 ----------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~--------~w~~~~~~~~~~~~~~~~~ 206 (312)
....++|+.|+..-|+..++.....++|..++..++.. + +-.+..++..+..++.+..
T Consensus 329 ~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l 408 (433)
T PF03092_consen 329 EVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL 408 (433)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 33467899999999999998877777777776666522 2 2334455555555555555
Q ss_pred hhcccCCh
Q 048699 207 LFFIPEIA 214 (312)
Q Consensus 207 ~~~~pes~ 214 (312)
..++|+..
T Consensus 409 l~lLp~~~ 416 (433)
T PF03092_consen 409 LFLLPPQK 416 (433)
T ss_pred HHHcCCCc
Confidence 66677654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.46 Score=44.36 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=53.3
Q ss_pred HHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh--cc-------------------------------------
Q 048699 108 GAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS--KQ------------------------------------- 148 (312)
Q Consensus 108 ~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~--~~------------------------------------- 148 (312)
+..+...+..+++++++|.+++.+..........+.++. ++
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 555667788999999999998877665555444444332 22
Q ss_pred --------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 --------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 --------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
-..+..|..+.++-.+..++.+.+.++|.+++..+.
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~ 200 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLT 200 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234557777777777888888888888777766554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.014 Score=53.38 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=73.9
Q ss_pred ccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh------c-c-----
Q 048699 81 ESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS------K-Q----- 148 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~------~-~----- 148 (312)
..++... |+++...|..- +...+.++.|.+.+.++.+|+|..+.=+++......+..++..+ + +
T Consensus 282 t~yl~~~-G~s~~~igi~R---~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 282 TAYLKSQ-GYSPSVIGIFR---GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred HHHHHHC-CCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 3344444 99999999999 99999999999999999999998887777666444333332211 1 1
Q ss_pred -------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 -------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 -------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
...+++|..|+++||...+.-.....+-.++...++
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556778999999999999888777777666665554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.095 Score=48.72 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCh-hHHHHHHHHHHHHHHHHHHHhc-----------------------c----------
Q 048699 103 LLMTIGAISGSLINGKIADLTGQ-RCAMRLSDLFCILGWLAIAFSK-----------------------Q---------- 148 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Gr-k~~~~~~~~~~~~~~~~~~~~~-----------------------~---------- 148 (312)
..+.+...+.+++..++++|+|+ |++..++.++.+++.+...+.+ .
T Consensus 312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 391 (477)
T TIGR01301 312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILG 391 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhh
Confidence 55555556778888999999994 7776777666666555443211 1
Q ss_pred ---------cceeeeecCCC--CchhHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHH-hhcc
Q 048699 149 ---------IPIYITEIAPK--NVRGAYTATNQLLVASGLSVTYLVGTVV------SCLVLALIAAVPCLLQVVG-LFFI 210 (312)
Q Consensus 149 ---------~~~~i~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~-~~~~ 210 (312)
-.+++++..++ +..|..+|+.|.+..+.+++..+....+ +-.+.+.+.++..+++.+. .+.+
T Consensus 392 i~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 392 IPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred HHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence 33566776764 5559999999999999988876544221 2345777778777776554 4566
Q ss_pred cCCh
Q 048699 211 PEIA 214 (312)
Q Consensus 211 pes~ 214 (312)
|+.+
T Consensus 472 ~~~~ 475 (477)
T TIGR01301 472 PRPR 475 (477)
T ss_pred CCCC
Confidence 7654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.038 Score=50.73 Aligned_cols=69 Identities=9% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHhhccCccccccceeeeeCCCccccccc--cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHH
Q 048699 53 AICGSFLMATHNGSLIDYFFQIGYSSPAESGITAD--LGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMR 130 (312)
Q Consensus 53 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~ 130 (312)
+.+.+++.|. -.|.....+|.+.++ -+.+-++.+..+++.--+.+=.+=..++=.....|+||||..+
T Consensus 5 L~~LY~lQGi----------P~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWi 74 (544)
T PF13000_consen 5 LVLLYFLQGI----------PLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWI 74 (544)
T ss_pred HHHHHHHcCc----------ccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhh
Confidence 3455777888 777765677877776 6777777776553333344333333333344455899998765
Q ss_pred H
Q 048699 131 L 131 (312)
Q Consensus 131 ~ 131 (312)
+
T Consensus 75 i 75 (544)
T PF13000_consen 75 I 75 (544)
T ss_pred h
Confidence 4
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.43 Score=43.95 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc--------------------cceeeeecCCCCch
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ--------------------IPIYITEIAPKNVR 162 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~i~e~~~~~~r 162 (312)
++.+....+++++++.+.|+.|.|+.+.++........+...+.+. -..|++|..+++.+
T Consensus 57 aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ti 136 (461)
T KOG3098|consen 57 AIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETI 136 (461)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhhH
Confidence 8889999999999999999999999999999888776665554444 34688999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 048699 163 GAYTATNQLLVASGLSVTY 181 (312)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~ 181 (312)
.+..++.-.....+.++|.
T Consensus 137 e~Nisi~Wai~~~~li~Gg 155 (461)
T KOG3098|consen 137 ERNISIFWAIGQSSLIIGG 155 (461)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 8888876555555555553
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.035 Score=49.24 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=76.4
Q ss_pred ccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcC--hhHHHHHHHHHHHHHHHHHHHhcc--------------
Q 048699 85 TADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTG--QRCAMRLSDLFCILGWLAIAFSKQ-------------- 148 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~G--rk~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (312)
...+|.++.+.|.+. +...+++.+.+....+..||.. -+..+..+.+++.-..++.+.+..
T Consensus 289 ~~rfg~ss~~~G~vl---~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~ 365 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVL---STTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS 365 (451)
T ss_pred cCccCCChhhheeee---ehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 467899999999888 8888999999988899999887 666666666665555555444433
Q ss_pred -------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 -------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 -------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
....+....|.+.||.++|+......++-.+||+++
T Consensus 366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~ 408 (451)
T KOG2615|consen 366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS 408 (451)
T ss_pred HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence 334557778999999999999999999999999887
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.0065 Score=56.01 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=57.4
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHH-HHHHHHHHHHHhc
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDL-FCILGWLAIAFSK 147 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~-~~~~~~~~~~~~~ 147 (312)
..+.+.+.++.+.+.+|+++.+.|.+. ..--+..+++.+++|+++||+-+|+.++++.. ....+.++..+.+
T Consensus 26 ~~g~l~pll~vy~kQLGl~p~~~Gtl~---g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~ 98 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFKQLGLNPAVVGTLT---GTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVP 98 (618)
T ss_pred cccccchHHHHHHHHcCCCHHHhhhhh---hHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeecc
Confidence 445566777788889999999999999 99999999999999999999988777666554 4455555555543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.21 Score=46.62 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh--hH-----HHHHHHHHHHHHHHHHHHhcc-------------------
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIADLTGQ--RC-----AMRLSDLFCILGWLAIAFSKQ------------------- 148 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr--k~-----~~~~~~~~~~~~~~~~~~~~~------------------- 148 (312)
.+|.. ++..+..++.+++.+++=.|.+| |. =+.+|+++.+++.+++.+...
T Consensus 310 ~~~~q---slNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~ 386 (493)
T PRK15462 310 TAMFQ---SINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAV 386 (493)
T ss_pred HHHHH---hHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 45677 88888888888888877666632 21 156677777777665543211
Q ss_pred -----------cceeeeecCCCCchhHHHHHHHHH-HHHHHHHHHHhh
Q 048699 149 -----------IPIYITEIAPKNVRGAYTATNQLL-VASGLSVTYLVG 184 (312)
Q Consensus 149 -----------~~~~i~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~ 184 (312)
..+.+++..|++.||..+|.+.+. ..+|..++..++
T Consensus 387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~ 434 (493)
T PRK15462 387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIA 434 (493)
T ss_pred HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999999998663 467776665554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.28 Score=46.73 Aligned_cols=131 Identities=16% Similarity=0.100 Sum_probs=88.5
Q ss_pred eeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHHHHHHHhcc-----
Q 048699 75 GYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGWLAIAFSKQ----- 148 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~~----- 148 (312)
++....+.++..+++.+...+.-.. +.+.-......+.+++++|-| ||-+++.++.++..+|..+..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v---~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~ 131 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNV---NAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL 131 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHH---HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4456667788888888776666666 777777777889999999964 8999999999888887655433211
Q ss_pred -----------------------------------------cceeeeecCC----CCchh--HHHHHHHHHHHHHHHHHH
Q 048699 149 -----------------------------------------IPIYITEIAP----KNVRG--AYTATNQLLVASGLSVTY 181 (312)
Q Consensus 149 -----------------------------------------~~~~i~e~~~----~~~r~--~~~~~~~~~~~~g~~~~~ 181 (312)
...+-+|-++ ++.+. .....+.....+|.+++.
T Consensus 132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~ 211 (571)
T KOG1237|consen 132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ 211 (571)
T ss_pred CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence 2234445554 22222 455566666777777765
Q ss_pred Hhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 182 LVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 182 ~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
.+. ...+|.+.|.+..+..++++++++
T Consensus 212 t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 212 TVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 554 445899999887777666655443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.82 Score=41.97 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHH
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCI 137 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~ 137 (312)
..-.+..++.++..|.+.||..|.+++..+.+..-
T Consensus 45 l~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 45 LVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQN 79 (432)
T ss_pred HHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHH
Confidence 56677778888999999999999988777665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.46 Score=45.46 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=78.2
Q ss_pred cccccccc-CCcccc--hhHHHHHHHHHHHHHHHHHHhHHhhhhhc---------ChhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 81 ESGITADL-GLSVRE--DLLIEASLLLMTIGAISGSLINGKIADLT---------GQRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 81 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~ig~~~~g~l~dr~---------Grk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
..++-+.+ |.+.+. ..... ++..++..+|-+..|.+.... .|--.+.+..+ +.++.++.++...
T Consensus 376 ~~qI~~sl~g~~~~~~~~~~~v---sL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p 451 (591)
T PTZ00207 376 ARFIYTALAGEAPDDALNTLLT---VLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLP 451 (591)
T ss_pred HHHHHHHhcCCCCCccceeeeh---hhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCC
Confidence 34555556 542222 22256 788888888888888777222 12222233333 4444444333322
Q ss_pred ---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHH--HHhhhhH-------------H---H
Q 048699 149 ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVT--YLVGTVV-------------S---C 189 (312)
Q Consensus 149 ---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~--~~~~~~~-------------~---w 189 (312)
.+..++|++. ++-|+-..+..++..+|+.+- .+.+..+ | .
T Consensus 452 ~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~ 530 (591)
T PTZ00207 452 KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCV 530 (591)
T ss_pred ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceee
Confidence 4567799999 888999998888888888774 2223222 1 6
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-CChHhH
Q 048699 190 LVLALIAAVPCLLQVVGLFFIP-EIAQSI 217 (312)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~p-es~~~~ 217 (312)
+..|++.+.+++++.+....+. ++.++.
T Consensus 531 ~~~~~v~~~~~~~g~~~s~~l~~R~r~~y 559 (591)
T PTZ00207 531 VMPLAFLLGLSFLAFITSTYVHLQYRRLC 559 (591)
T ss_pred HhHHHHHHHHHHHHHHHHhheeeehHHHH
Confidence 7788888888888776654433 444433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.36 Score=43.14 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhh-----hcChhH
Q 048699 53 AICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIAD-----LTGQRC 127 (312)
Q Consensus 53 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d-----r~Grk~ 127 (312)
..+.+...|. -.+... .+|.+.+.=|.|-++.+..+ .++. -..--+++.++.| |+|||+
T Consensus 36 Ll~LYllQGi----------P~GL~~-~iP~lL~ak~vSyt~~a~fS---~ay~--P~sLKllWaPiVDs~y~k~~Grrk 99 (510)
T KOG3574|consen 36 LLFLYLLQGI----------PLGLIG-AIPLLLQAKGVSYTSQAIFS---FAYW--PFSLKLLWAPIVDSVYSKRFGRRK 99 (510)
T ss_pred HHHHHHHcCC----------chhHhh-hhHHHhcCCCcchhhhhhhh---hhhh--HHHHHHHHHhhhHHHHHHhhcccc
Confidence 3344667777 777777 88888887788877776555 2211 1123467778888 999998
Q ss_pred HHHH
Q 048699 128 AMRL 131 (312)
Q Consensus 128 ~~~~ 131 (312)
..++
T Consensus 100 sWvv 103 (510)
T KOG3574|consen 100 SWVV 103 (510)
T ss_pred ceee
Confidence 7655
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.58 Score=39.87 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=40.1
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHH
Q 048699 78 SPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILG 139 (312)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~ 139 (312)
++..-++.+.++....+.+.+. ...+-..++.+.+.|-++|+-|||+.-+.-++...++
T Consensus 57 gPYvYyLYstYgFgkG~IgqLf---iaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs 115 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLF---IAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS 115 (454)
T ss_pred CceeeeeehhcCccCCccceee---ecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH
Confidence 3444556677888888877665 5555556677778889999999998654444444333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.12 Score=49.99 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=46.9
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHH-HHHHHHHhHHhhhhhcC--hhHHHHHHHHHHHHHHHH
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTI-GAISGSLINGKIADLTG--QRCAMRLSDLFCILGWLA 142 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~G--rk~~~~~~~~~~~~~~~~ 142 (312)
....++++.+|+++.+.+++. ....+ +.++|.+++|+++||++ .|+.+.++.++..++.++
T Consensus 352 ~lP~yl~~~~g~s~~~ag~l~---~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 352 FLPKYLENQYGISSAEANFLI---GVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHcCCcHHHHHHHh---hhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 334467778999999999888 77666 67899999999999998 456777777666666544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.82 Score=41.71 Aligned_cols=49 Identities=29% Similarity=0.354 Sum_probs=37.3
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcCh-hHHHHHHHHHHHHH
Q 048699 88 LGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQ-RCAMRLSDLFCILG 139 (312)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Gr-k~~~~~~~~~~~~~ 139 (312)
-|.+....|++. ....+++++|+.++|.++||... |.+.++......++
T Consensus 296 sgY~~~~aG~ig---~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 296 SGYEGVFAGYIG---ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred ccCCccccchhH---HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 344557788999 99999999999999999999865 55555555555555
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.6 Score=39.84 Aligned_cols=37 Identities=22% Similarity=0.088 Sum_probs=28.2
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChh
Q 048699 87 DLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQR 126 (312)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk 126 (312)
-+|.+....+.+. +++.+|..+|+.+++++.++.-++
T Consensus 44 ~~G~s~~~~~~ii---~~fl~glalGs~l~~~~~~~~~~~ 80 (521)
T PRK03612 44 LLGDSVTQFSTVI---GLMLFAMGVGALLSKYLLRDAAAG 80 (521)
T ss_pred HhCchHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3566666777777 999999999999999887543333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.66 Score=41.68 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=44.1
Q ss_pred cceeeeecCCCC---chhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 IPIYITEIAPKN---VRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 ~~~~i~e~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...+.+|.++++ +|......+..+.++|.+++..+. ...+|.+.|.+.++..+++++.++.
T Consensus 54 i~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 54 ISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 556666776554 456666777888999999887665 4468999999988887777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.88 Score=41.22 Aligned_cols=103 Identities=18% Similarity=0.075 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc------------cceee--------eecCCCCch
Q 048699 103 LLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------IPIYI--------TEIAPKNVR 162 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------~~~~i--------~e~~~~~~r 162 (312)
.+-.+-..+..+.+.+..+|+.-+.-+.++.++..++.++.+++++ ...-. ...+++
T Consensus 66 ladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~--- 142 (402)
T PF02487_consen 66 LADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGK--- 142 (402)
T ss_pred HHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCc---
Confidence 4445556666777888889887555556667777778887777666 11111 112332
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh---hhH--HHHHHHHHHHHHHHHHHHHhhc
Q 048699 163 GAYTATNQLLVASGLSVTYLVG---TVV--SCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 163 ~~~~~~~~~~~~~g~~~~~~~~---~~~--~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...+.+..+.+.|+++|+..- ... +-|..+++..++.++..+.+++
T Consensus 143 -~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~ 193 (402)
T PF02487_consen 143 -SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFF 193 (402)
T ss_pred -cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 234555555555666654432 113 3466777666665555444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.89 E-value=4.5 Score=36.62 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCChH
Q 048699 191 VLALIAAVPCLLQVVGLFFIPEIAQ 215 (312)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~pes~~ 215 (312)
..|.+..++.+++++.+..+|+.|.
T Consensus 184 ~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 184 IYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcchH
Confidence 4455566666666666666777763
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.6 Score=39.99 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 048699 89 GLSVREDLLIEASLLLMTIGAISGSLINGKIADLT 123 (312)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 123 (312)
|.+.....+.. .++..++.+|.+++|.++||+
T Consensus 279 ~~~~~~~~ifg---~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 279 GFDHNATLIFG---GVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred CCccccchhhh---hHHHhhchhhheehHHHHHHH
Confidence 34455556677 888999999999999999994
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.22 E-value=16 Score=33.80 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhcccCChH
Q 048699 192 LALIAAVPCLLQVVGLFFIPEIAQ 215 (312)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~pes~~ 215 (312)
.|.+.+++.+++++.+..+++.|.
T Consensus 177 YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 177 YFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344445555556666666677663
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.42 E-value=4.6 Score=28.87 Aligned_cols=38 Identities=18% Similarity=-0.099 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHH
Q 048699 103 LLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGW 140 (312)
Q Consensus 103 ~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~ 140 (312)
+.-++++.+.....||+.||| |.++..++..++.+.+.
T Consensus 49 ssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 49 SSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 666777777777889999997 67776666555554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=83.17 E-value=0.37 Score=45.71 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=0.0
Q ss_pred eCCCccccccccCCcccchhHHHHHHHHHHH-HHHHHHHhHHhhhhhcC--hhHHHHHHHHHHHHHHH
Q 048699 77 SSPAESGITADLGLSVREDLLIEASLLLMTI-GAISGSLINGKIADLTG--QRCAMRLSDLFCILGWL 141 (312)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~G--rk~~~~~~~~~~~~~~~ 141 (312)
.....-+++.+|++++++++.+. ....+ +.++|.+++|++..|+. .|..+.++.+...++.+
T Consensus 325 ~tF~pKylE~QF~~sas~A~~l~---G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~ 389 (539)
T PF03137_consen 325 ATFLPKYLESQFGLSASQASLLT---GIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI 389 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH---hhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 34445588999999999988776 55555 77789999999999874 45555555544444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.70 E-value=1.5 Score=40.66 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=32.1
Q ss_pred eecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q 048699 154 TEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVP 199 (312)
Q Consensus 154 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~ 199 (312)
+|...|+.++...+.+.....++..+++.+. ...|.|+...+.+..
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~ 463 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCL 463 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHH
Confidence 5667788888888888888888888887776 334556555554433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.29 E-value=3 Score=35.30 Aligned_cols=50 Identities=6% Similarity=-0.000 Sum_probs=31.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHH--Hhh-------hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 160 NVRGAYTATNQLLVASGLSVTY--LVG-------TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 160 ~~r~~~~~~~~~~~~~g~~~~~--~~~-------~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
++|+....+...++++|.++.. .+. ..-+|++.+.+.+++.++-++++.+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777776652 222 1226999998888877666665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 312 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-04 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 312 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 9e-04
Identities = 39/312 (12%), Positives = 81/312 (25%), Gaps = 91/312 (29%)
Query: 2 ETSESLEEGLIPDPPFLVPRPVITNNEISNGSCLQESDSVATPAVVF-------SSLVAI 54
E + L + V R ++ L E A ++ + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQ--ALLE-LRPAKNVLIDGVLGSGKTWVAL- 168
Query: 55 CGSFLMATHNGSLIDYF-FQIGYSSPAESGITADLGLSVREDLLIEA-SLLLMTIGAISG 112
+ + F+I + + L + ++E LL I
Sbjct: 169 -----DVCLSYKVQCKMDFKIFW-------LN--LKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 113 SLINGKIA-DLTGQRCAMRLSDLFC---------IL-----GWLAIAFSKQIPIYIT--- 154
S + L L L +L AF+ I +T
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 155 -EIAPKNVRGAYTATNQLLVASGLSVTY-----LVGTVVSC--------------LVLAL 194
++ + A T T+ L +++T L+ + C L++
Sbjct: 275 KQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 195 IAAVPCLLQVVGLFFIPEIAQSIIRRATIGKEKELDTTLQRLMGKTADISMESPDIRDYT 254
IA I + + + +K L ++ + + +E + R
Sbjct: 333 IAE-----------SIRDGLATWDNWKHVNCDK-----LTTIIESSLN-VLEPAEYRKMF 375
Query: 255 KTFKNDSRAGIF 266
+F
Sbjct: 376 DRL------SVF 381
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 312 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.93 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.81 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.81 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.69 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.58 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.37 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.18 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.12 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.1 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.87 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.62 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.05 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.69 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=204.53 Aligned_cols=245 Identities=22% Similarity=0.349 Sum_probs=188.4
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCc--------ccchhHHHHHHHHHHHHHHHHHH
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLS--------VREDLLIEASLLLMTIGAISGSL 114 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ig~~ 114 (312)
+++.+.++++++++.+.+|| +.++++..++.+.++++.+ ....+++. +.+.+|.++|++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gy----------d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---s~~~~G~~iG~~ 73 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGY----------DTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV---ASALIGCIIGGA 73 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHH---HTHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHHHHHHHH
Confidence 35567777778889999999 8888888888887776432 23456777 999999999999
Q ss_pred hHHhhhhhcChhHHHHHHHHHHHHHHHHHHH------------------hcc---------------------cceeeee
Q 048699 115 INGKIADLTGQRCAMRLSDLFCILGWLAIAF------------------SKQ---------------------IPIYITE 155 (312)
Q Consensus 115 ~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~------------------~~~---------------------~~~~i~e 155 (312)
++|+++||+|||++++++.+++.++.+++++ +++ .+.+++|
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E 153 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998874 333 6689999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHhhcccCChHhHHHHHhc
Q 048699 156 IAPKNVRGAYTATNQLLVASGLSVTYLVGT------------VVSCLVLALIAAVPCLLQVVGLFFIPEIAQSIIRRATI 223 (312)
Q Consensus 156 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------~~~w~~~~~~~~~~~~~~~~~~~~~pes~~~~~~~~~~ 223 (312)
+.|+++|++..++.+.+..+|.++++.++. ...||+.+.+..+..++.++..+++||||+|+ ..+
T Consensus 154 ~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L---~~~ 230 (491)
T 4gc0_A 154 LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL---MSR 230 (491)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHH---HHT
T ss_pred hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHH---HHc
Confidence 999999999999999999999888877652 23688888888888888888888999999999 999
Q ss_pred CCHHHHHHHHHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHHH
Q 048699 224 GKEKELDTTLQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYIF 303 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (312)
++.+++++.+++.++.+... ++..+.++..+.+++ .......+ ..++..+......++++.+.+.+.+|.+.++
T Consensus 231 ~~~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (491)
T 4gc0_A 231 GKQEQAEGILRKIMGNTLAT-QAVQEIKHSLDHGRK--TGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVF 304 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CchhHHHHhHHHhcCCchhH-HHHHHHHHHHHhhhh--hhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence 99999999998876543211 111111111111111 11111222 2355667777788888999999999999999
Q ss_pred HHcCCC
Q 048699 304 AAAGKF 309 (312)
Q Consensus 304 ~~~G~~ 309 (312)
+..|.+
T Consensus 305 ~~~~~~ 310 (491)
T 4gc0_A 305 KTLGAS 310 (491)
T ss_dssp HHSSCC
T ss_pred HhcCCC
Confidence 988765
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=163.66 Aligned_cols=210 Identities=13% Similarity=0.045 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHH
Q 048699 49 SSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCA 128 (312)
Q Consensus 49 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~ 128 (312)
..+.+.+..+..++ ......+..|.+.+++|++..+.+++. +.+.++.++++++.|+++||+|||++
T Consensus 27 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~s~~~~g~~~---~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 27 PFALLCSLFFLWAV----------ANNLNDILLPQFQQAFTLTNFQAGLIQ---SAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHSCCCSHHHHHHH---HHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 33344455566666 666677788899999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHhcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 129 MRLSDLFCILGWLAI---AFSKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~---~~~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
++++.++.+++.+++ +++++ ...++.|++|+++|+++.++.+.+..+|.++++.++
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 66666 557889999999999999999999999999998887
Q ss_pred hhHH------------------------------HHHHHHHHHHHHHHHHHHhhc--ccCChHhHHHHHhcCCHHHHHHH
Q 048699 185 TVVS------------------------------CLVLALIAAVPCLLQVVGLFF--IPEIAQSIIRRATIGKEKELDTT 232 (312)
Q Consensus 185 ~~~~------------------------------w~~~~~~~~~~~~~~~~~~~~--~pes~~~~~~~~~~~~~~~~~~~ 232 (312)
.... ||+.|++.+++.++..+..++ .||+++.. +
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~-------- 239 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------H-------- 239 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC------C--------
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc------c--------
Confidence 4432 999998777665555443332 34443110 0
Q ss_pred HHHHhCCCCChhhhhHHHHHhhhhhccccccchhhhccccchhHHHHHHHHHHHhhhhchhHHHhcHHHH-HHHc-CCCC
Q 048699 233 LQRLMGKTADISMESPDIRDYTKTFKNDSRAGIFYLFQRNYAYSLSVGVGLMVMQPLVGSAAIAYYASYI-FAAA-GKFT 310 (312)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-G~~~ 310 (312)
+ + +++++.+.+++++++++..+...+...+.. .....+..|.|.+ +++. |+++
T Consensus 240 -------~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 240 -------S-D-------------AKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp -------C-C-------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSTTCCH
T ss_pred -------c-c-------------ccccchhhhHHHHHhChHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccCCcch
Confidence 0 0 001112235667777765555444433333 2355677888888 8776 7764
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=166.91 Aligned_cols=160 Identities=12% Similarity=-0.001 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 048699 44 PAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT 123 (312)
Q Consensus 44 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 123 (312)
+.++.......++.+..++ ......+..|.+.+++ .+..+.+++. +++.++..++++++|+++||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~s~~~~g~~~---~~~~~~~~~~~~~~G~l~dr~ 89 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYL----------VRKNFALAMPYLVEQG-FSRGDLGFAL---SGISIAYGFSKFIMGSVSDRS 89 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHTSHHHHHHHTTSST-TCSSCHHHHH---HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-ccHhHHHHHH---HHHHHHHHHHHHhHHHHHHhc
Confidence 3445555566666677777 6666777888999999 9999999999 999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH----hcc---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHH
Q 048699 124 GQRCAMRLSDLFCILGWLAIAF----SKQ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLS 178 (312)
Q Consensus 124 Grk~~~~~~~~~~~~~~~~~~~----~~~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~ 178 (312)
|||++++++.++.+++.+++++ +++ ...++.|++|+++|++++++.+.+..+|.+
T Consensus 90 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 90 NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 776 456889999999999999999999999988
Q ss_pred HHHHhh----hhHH-HHHHHHHHHHHHHHHHH-HhhcccCChHhH
Q 048699 179 VTYLVG----TVVS-CLVLALIAAVPCLLQVV-GLFFIPEIAQSI 217 (312)
Q Consensus 179 ~~~~~~----~~~~-w~~~~~~~~~~~~~~~~-~~~~~pes~~~~ 217 (312)
+++.++ ...+ ||+.|++.++++++..+ ..+++||+|+..
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 888776 3457 99999998887766544 456778887543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=147.21 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=119.5
Q ss_pred eeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----
Q 048699 73 QIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---- 148 (312)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---- 148 (312)
......+..|.+.+++|.+..+.+++. +.+.++..+++++.|+++||+|||+++.++.++..++.++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVM---GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL 91 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHH---HHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 445556778888999999999999999 9999999999999999999999999999999999999888877766
Q ss_pred -----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH-H
Q 048699 149 -----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVV-G 206 (312)
Q Consensus 149 -----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~-~ 206 (312)
...++.|++|+++|+++.+..+.+..+|..+++.++ ...+||+.+++.+++.++..+ .
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999998888876 445899999988887776655 4
Q ss_pred hhcccCChH
Q 048699 207 LFFIPEIAQ 215 (312)
Q Consensus 207 ~~~~pes~~ 215 (312)
.+++||+++
T Consensus 172 ~~~~~~~~~ 180 (375)
T 2gfp_A 172 ARWMPETRP 180 (375)
T ss_dssp CCSSCCCST
T ss_pred HHHCcccCC
Confidence 456677653
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=131.13 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=105.5
Q ss_pred Cccccccc-----cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh-cChhHHHHHHHHHHHHHHHHHHHhcc-----
Q 048699 80 AESGITAD-----LGLSVREDLLIEASLLLMTIGAISGSLINGKIADL-TGQRCAMRLSDLFCILGWLAIAFSKQ----- 148 (312)
Q Consensus 80 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~~----- 148 (312)
..+++.++ +|.+..+.+++. +.+.++..++++++|+++|| +|||+++.++.++.+++.++++++++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIM---AIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALF 112 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHH
T ss_pred HHHHHHhccchhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555 999999999999 99999999999999999999 89999999999999999998888776
Q ss_pred ----------------cceeeeecCCCCc--hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKNV--RGAYTATNQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVG 206 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~ 206 (312)
...++.|++|+++ |+.+.+.++.+..+|..+++.++ ...+||+.|++.++..++..+.
T Consensus 113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 5578899999988 77778888888888888887776 4468999999987776665554
Q ss_pred hh
Q 048699 207 LF 208 (312)
Q Consensus 207 ~~ 208 (312)
.+
T Consensus 193 ~~ 194 (491)
T 4aps_A 193 YY 194 (491)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=120.12 Aligned_cols=127 Identities=15% Similarity=0.078 Sum_probs=106.9
Q ss_pred CccccccccC------CcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc-ChhHHHHHHHHHHHHHHHHHHHhc-c---
Q 048699 80 AESGITADLG------LSVREDLLIEASLLLMTIGAISGSLINGKIADLT-GQRCAMRLSDLFCILGWLAIAFSK-Q--- 148 (312)
Q Consensus 80 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~-~--- 148 (312)
..+++.+++| .+..+.+++. +.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~---~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVF---HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHH---HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 3446677888 9999999999 999999999999999999999 999999999999999999988887 6
Q ss_pred ------------------cceeeeecCCCCchhHHHHH---HHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH
Q 048699 149 ------------------IPIYITEIAPKNVRGAYTAT---NQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQ 203 (312)
Q Consensus 149 ------------------~~~~i~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~ 203 (312)
...++.|++|+++|+++.+. .+.+..+|..+++.++ ...+|++.|++.+++.++.
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 45688999999999877666 7888888888888776 3458999999888776666
Q ss_pred HHHhhc
Q 048699 204 VVGLFF 209 (312)
Q Consensus 204 ~~~~~~ 209 (312)
.+..++
T Consensus 192 ~~~~~~ 197 (524)
T 2xut_A 192 TVFFWL 197 (524)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.3e-11 Score=108.69 Aligned_cols=133 Identities=15% Similarity=0.084 Sum_probs=97.1
Q ss_pred CCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc----------
Q 048699 79 PAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------- 148 (312)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------- 148 (312)
...+.+.+..+.+........ ....+...++.++++++.||+|||+.++.+.....++.+..+....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQT---IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hcchHHHHhcCCCccchhhHH---HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 344566666777666666667 7788889999999999999999999998888777766655443211
Q ss_pred ----------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHHH
Q 048699 149 ----------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGT----------VVSCLVLALIAAVPCLL 202 (312)
Q Consensus 149 ----------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----------~~~w~~~~~~~~~~~~~ 202 (312)
...+.+|.+|++.|+++.++......+|.++++.+.. ..++.+.|++.++++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2357899999999999999998888777777654431 12344567776666666
Q ss_pred HHH-HhhcccCCh
Q 048699 203 QVV-GLFFIPEIA 214 (312)
Q Consensus 203 ~~~-~~~~~pes~ 214 (312)
..+ .++++||++
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 554 457889985
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.2e-12 Score=112.61 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=82.8
Q ss_pred CCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHH---HHHHHh----cc--
Q 048699 79 PAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGW---LAIAFS----KQ-- 148 (312)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~---~~~~~~----~~-- 148 (312)
+..| ++++++|++..+.+++. +.+.++..++++++|+++||+|||++++++.++..++. ....+. ..
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~---~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIF---AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHH---HHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56677999999999999 99999999999999999999999999998877654321 111111 11
Q ss_pred ----------------cceeeeecCCC--CchhHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHh
Q 048699 149 ----------------IPIYITEIAPK--NVRGAYTATNQLLVASGLSVTYLVGTV---VSCLVLALIAAVPCLLQVVGL 207 (312)
Q Consensus 149 ----------------~~~~i~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~ 207 (312)
....+.++.++ +.|+...+....+..+|..+++.++.. .+|++.|++.+++.++..+..
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 01112223222 344555555544555565566555422 478999887766655544444
Q ss_pred hcccC
Q 048699 208 FFIPE 212 (312)
Q Consensus 208 ~~~pe 212 (312)
++.++
T Consensus 185 ~~~~~ 189 (417)
T 2cfq_A 185 FFAKT 189 (417)
T ss_dssp CSSCC
T ss_pred HHcCc
Confidence 44443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=104.61 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=98.3
Q ss_pred cccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhc--ChhHHHHHHHHHHH-HHHHHHHHhc--c--------
Q 048699 82 SGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLT--GQRCAMRLSDLFCI-LGWLAIAFSK--Q-------- 148 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--Grk~~~~~~~~~~~-~~~~~~~~~~--~-------- 148 (312)
.++++.+|.+..+.+++. +...++.+++.++.|++.||+ |||+.+.++.++.. ++.++..+.+ +
T Consensus 277 ~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (451)
T 1pw4_A 277 TYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 353 (451)
T ss_dssp HHBTTBSCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 345555899999999999 999999999999999999999 99998887776655 5554444432 2
Q ss_pred -------------cceeeeecCCCCchhHHHHHHHHHHHH-HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhc
Q 048699 149 -------------IPIYITEIAPKNVRGAYTATNQLLVAS-GLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLFF 209 (312)
Q Consensus 149 -------------~~~~i~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (312)
...++.|..|++.|+++.++.+....+ |..+++.+. +..+|+..|++.+++.++..+..++
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 336779999999999999999988888 888887775 3347889988888777776655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=97.37 Aligned_cols=123 Identities=10% Similarity=-0.082 Sum_probs=91.3
Q ss_pred ccc-cccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-----------
Q 048699 81 ESG-ITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ----------- 148 (312)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~----------- 148 (312)
..+ +++.+|.+..+.++.. +...++.+++.++.|+++||+|||+.+.++.++..++.++..+.++
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 358 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYL---TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCS 358 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 345 5566799999999999 9999999999999999999999999999998888888777766554
Q ss_pred ---------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhHH-HHHHHHHHHHHHHHHHHHhh
Q 048699 149 ---------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG----TVVS-CLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 ---------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~-w~~~~~~~~~~~~~~~~~~~ 208 (312)
...+..|.+|++ |+.+.++.. ...+|..+++.+. +..+ ++..|++.+++.++..+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 334557778766 788877666 3446666666654 4556 77777776555444444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-09 Score=98.34 Aligned_cols=119 Identities=11% Similarity=0.018 Sum_probs=87.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc---------------------cce
Q 048699 93 REDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ---------------------IPI 151 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 151 (312)
...++.. ++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++ ...
T Consensus 259 ~~~g~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 259 RVFGYVT---TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666 7778888899999999999999999988887777666555443333 345
Q ss_pred eeeecCCCCchhHHHHH-HHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hcccCCh
Q 048699 152 YITEIAPKNVRGAYTAT-NQLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFIPEIA 214 (312)
Q Consensus 152 ~i~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~pes~ 214 (312)
++.|.+|++.|+++.+. ++....+|..++|.+. +..++...|.+.+++++++.+.. ++.||.+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 78999999999999888 4766777777776665 34578888888777777665543 4455543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=92.10 Aligned_cols=122 Identities=12% Similarity=-0.017 Sum_probs=87.7
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHH-----HHHHHHHHHHHHHHHhc---------c
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMR-----LSDLFCILGWLAIAFSK---------Q 148 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~-----~~~~~~~~~~~~~~~~~---------~ 148 (312)
+..+.++.+..+.++.. +...++..++.++.|++.||+|||+... ++.++.+++.++..... +
T Consensus 309 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQ---SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVS 385 (491)
T ss_dssp HHHHSCCCSSSCSGGGT---THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCC
T ss_pred HHHHHhccCccCHHHHh---ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44555666667778888 8889999999999999999999986544 55655555554444321 1
Q ss_pred ---------------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHH
Q 048699 149 ---------------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTVV---SCLVLALIAAVPCLLQV 204 (312)
Q Consensus 149 ---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~ 204 (312)
...++.|.+|++.|+++.++.+....+|..+++.+.... ++.+.+.+.++++++..
T Consensus 386 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (491)
T 4aps_A 386 PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLG 465 (491)
T ss_dssp THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 345779999999999999999999999999998887433 45566666666655554
Q ss_pred HHh
Q 048699 205 VGL 207 (312)
Q Consensus 205 ~~~ 207 (312)
+..
T Consensus 466 ~~~ 468 (491)
T 4aps_A 466 IVL 468 (491)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-06 Score=76.44 Aligned_cols=109 Identities=18% Similarity=0.021 Sum_probs=73.6
Q ss_pred ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHH-HHHHHH------------------HHHH
Q 048699 83 GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSD-LFCILG------------------WLAI 143 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~-~~~~~~------------------~~~~ 143 (312)
++++.+|.+..+.++.. +...++..++.++.+++.||+|++..+.... ...++. .++.
T Consensus 225 ~~~~~~g~~~~~~g~~~---~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 301 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILF---ILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF 301 (375)
T ss_dssp SSHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Confidence 44555888888899988 9999999999999999999999843332221 111000 0000
Q ss_pred HHhcc-----cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHH
Q 048699 144 AFSKQ-----IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVGTV----VSCLVLALI 195 (312)
Q Consensus 144 ~~~~~-----~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~w~~~~~~ 195 (312)
++... ...++.|..| ++|+++.++.+....+|..+++.+... .+|...+++
T Consensus 302 g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 302 FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 11100 4466788888 899999999999999998888766533 345555544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.69 E-value=3e-05 Score=71.34 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhh----hhcChh----HHHHHHHHHHHHHHHHHHHhc---------c---------
Q 048699 95 DLLIEASLLLMTIGAISGSLINGKIA----DLTGQR----CAMRLSDLFCILGWLAIAFSK---------Q--------- 148 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~~ig~~~~g~l~----dr~Grk----~~~~~~~~~~~~~~~~~~~~~---------~--------- 148 (312)
.+++. ....++..++.++.+++. +|.|+| +.+.++.++.+++.++.++.. +
T Consensus 337 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (524)
T 2xut_A 337 PAMMQ---ALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYA 413 (524)
T ss_dssp HHHHH---TTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 45555 555566677777777664 555432 455566666666555444321 1
Q ss_pred ------------cceeeeecCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ------------IPIYITEIAPKNVRGAYTATNQLLVASGLSVTYLVG 184 (312)
Q Consensus 149 ------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 184 (312)
...++.|..|++.||+++++.++...+|..+++.+.
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999988888776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 312 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.82 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.13 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.98 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.3e-20 Score=168.68 Aligned_cols=159 Identities=12% Similarity=-0.003 Sum_probs=125.2
Q ss_pred chHHHHHHHHHHHHHHHHhhccCccccccceeeeeCCCccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 048699 43 TPAVVFSSLVAICGSFLMATHNGSLIDYFFQIGYSSPAESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADL 122 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr 122 (312)
++.+|.+.+.+.++++...+ +...++...|.+. ++|++.++.+++. +.+.++.+++++++|+++||
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~----------~~~~~~~~~p~~~-~~g~s~~~~g~~~---s~~~~~~~~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYL----------VRKNFALAMPYLV-EQGFSRGDLGFAL---SGISIAYGFSKFIMGSVSDR 85 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHTSHHHHHHHTT-SSTTCSSCHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HhCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666 5555566677776 5899999999999 99999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhc----c---------------------cceeeeecCCCCchhHHHHHHHHHHHHHH
Q 048699 123 TGQRCAMRLSDLFCILGWLAIAFSK----Q---------------------IPIYITEIAPKNVRGAYTATNQLLVASGL 177 (312)
Q Consensus 123 ~Grk~~~~~~~~~~~~~~~~~~~~~----~---------------------~~~~i~e~~~~~~r~~~~~~~~~~~~~g~ 177 (312)
+|||+++.++.++.+++.++++++. + ...++.|++|+++|++++++.+.+..+|.
T Consensus 86 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 165 (447)
T d1pw4a_ 86 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 165 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh
Confidence 9999999999999999888877653 2 44688999999999999999999999998
Q ss_pred HHHHHhhh-----hHHHHHHHHHHHHHHHHHHHH-hhcccCChH
Q 048699 178 SVTYLVGT-----VVSCLVLALIAAVPCLLQVVG-LFFIPEIAQ 215 (312)
Q Consensus 178 ~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~-~~~~pes~~ 215 (312)
.+++.++. ..+||+.+++.+++.++..+. .++.++.|+
T Consensus 166 ~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 166 GIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp TSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 88776552 237999988877776655444 455566554
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.3e-11 Score=107.26 Aligned_cols=68 Identities=10% Similarity=-0.076 Sum_probs=58.0
Q ss_pred CCCcc-ccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 048699 78 SPAES-GITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ 148 (312)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
.+..| ++.+++|++.++.|++. +++.++..++++++|+++||+|||++++++.++..++..+..+..+
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~i~---s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T d1pv7a_ 27 FPFFPIWLHDINHISKSDTGIIF---AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHH---HHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH
T ss_pred HHHHHHHHHHccCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444 46778999999999999 9999999999999999999999999999988888877776665443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=2e-11 Score=105.92 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=93.7
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcc-------------------
Q 048699 88 LGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFSKQ------------------- 148 (312)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~------------------- 148 (312)
.+.+....+... +...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++
T Consensus 254 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 254 GEQGTRVFGYVT---TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccc---cccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 344455556666 8888999999999999999999999999999999888888877766
Q ss_pred --cceeeeecCCCCchhHHHHHH-HHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh-hccc
Q 048699 149 --IPIYITEIAPKNVRGAYTATN-QLLVASGLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGL-FFIP 211 (312)
Q Consensus 149 --~~~~i~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~-~~~p 211 (312)
...++.|.+|++.|++..++. ++...+|..+++.+. +..|++..+++.+++.++..+.. +.++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999974 455666666665554 66789999988877766655544 4443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=7.6e-10 Score=97.50 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=87.1
Q ss_pred CccccccccCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh---c--c------
Q 048699 80 AESGITADLGLSVREDLLIEASLLLMTIGAISGSLINGKIADLTGQRCAMRLSDLFCILGWLAIAFS---K--Q------ 148 (312)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dr~Grk~~~~~~~~~~~~~~~~~~~~---~--~------ 148 (312)
...++.+.++.+..+.++.. +...++.+++.++.|++.||++||+......+...+..+..... . +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 348 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred hhhhcccccccccchhhhhh---hcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHH
Confidence 34566777899999999999 99999999999999999999998754433332222221111111 0 0
Q ss_pred ---------------cceeeeecCCCCchhHHHHHHHHHHHH-HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 048699 149 ---------------IPIYITEIAPKNVRGAYTATNQLLVAS-GLSVTYLVG----TVVSCLVLALIAAVPCLLQVVGLF 208 (312)
Q Consensus 149 ---------------~~~~i~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~ 208 (312)
...+..|.+|++.|+++.++.+....+ |.++++.+. +..||+..+++.++.++++.+...
T Consensus 349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 445778999999999999988776555 445555554 456889888877766666554443
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