Citrus Sinensis ID: 048703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MKKQSSIAANVGDSTGIMTRSRAATLASQSSGFVASSRAPSVQTRKRVLRENPKKAASDENNIIVTDNPCRQHKRRAVLQDVTNVCCENSYRSFFHAAKIQPKNSKQAKNGQAQISKLAPSVSVKVLHVQANSKTRINKGTVKAGHKPVELSTSLGADMTVQLGSINECTRGNQRPSELQICTKKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN
cccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccc
cccccHHHHHcccccccHHHHHHHHHcccccccccccccccHHccccHHHHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHc
mkkqssiaanvgdstgimTRSRAATLasqssgfvassrapsvqTRKRVLRenpkkaasdenniivtdnpcrqhkRRAVLQDVTnvccensyrsffhaakiqpknskqakngqaqisklapsvsVKVLHvqansktrinkgtvkaghkpvelstslgadmtvqlgsinectrgnqrpselqICTKKvekdnfsgklmtscypdhvdidsdhtdpqlcsLYAADIYSNLqvaelnrrpfpnfmETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEeicapraeefcfitdntysREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN
mkkqssiaanvgdstgimTRSRAATLasqssgfvassrapsvqtrkrvlrenpkkaasdenniivtdnpcrqHKRRAVLQDVTNVCCENSYRSFFHAAKIQPKNSKQAKNGQAQIsklapsvsvkvlhvqansktrinkgtvkaghkPVELSTSLGADMTVQLGsinectrgnqrpselqICTKKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLgfqlfvpttKTFLRYFN
MKKQSSIAANVGDSTGIMTRSRAATLASQSSGFVASSRAPSVQTRKRVLRENPKKAASDENNIIVTDNPCRQHKRRAVLQDVTNVCCENSYRSFFHAAKIQPKNSKQAKNGQAQISKLAPSVSVKVLHVQANSKTRINKGTVKAGHKPVELSTSLGADMTVQLGSINECTRGNQRPSELQICTKKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN
**************************************************************IIVTDNPCRQHKRRAVLQDVTNVCCENSYRSFFHAAK**************************VLH********************************VQLG*I*************QICTKKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF*
*******************************************************************************QDVTN********************************************************************************************************************PDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN
*********NVGDSTGIMTRS***********************************ASDENNIIVTDNPCRQHKRRAVLQDVTNVCCENSYRSFFHAAKIQ************QISKLAPSVSVKVLHVQANSKTRINKGTVKAGHKPVELSTSLGADMTVQLGSINECTRGNQRPSELQICTKKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN
****************************************************************************************************************************************************************************************KVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKQSSIAANVGDSTGIMTRSRAATLASQSSGFVASSRAPSVQTRKRVLRENPKKAASDENNIIVTDNPCRQHKRRAVLQDVTNVCCENSYRSFFHAAKIQPKNSKQAKNGQAQISKLAPSVSVKVLHVQANSKTRINKGTVKAGHKPVELSTSLGADMTVQLGSINECTRGNQRPSELQICTKKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYFN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q9C968 461 Cyclin-A2-4 OS=Arabidopsi yes no 0.922 0.722 0.506 6e-87
Q38819 450 Cyclin-A2-3 OS=Arabidopsi no no 0.864 0.693 0.489 1e-78
Q2QQ96 490 Cyclin-A2-1 OS=Oryza sati yes no 0.988 0.728 0.441 5e-74
Q39071 443 Cyclin-A2-1 OS=Arabidopsi no no 0.853 0.695 0.463 3e-67
Q147G5 436 Cyclin-A2-2 OS=Arabidopsi no no 0.795 0.658 0.449 1e-64
Q7F830 508 Cyclin-A1-1 OS=Oryza sati no no 0.556 0.395 0.524 1e-56
Q0JPA4 477 Cyclin-A1-2 OS=Oryza sati no no 0.556 0.421 0.524 2e-56
Q9C6Y3 460 Cyclin-A1-1 OS=Arabidopsi no no 0.756 0.593 0.420 2e-56
Q0INT0 491 Cyclin-A1-3 OS=Oryza sati no no 0.556 0.409 0.514 7e-55
Q0DJR9 356 Cyclin-A1-4 OS=Oryza sati no no 0.434 0.441 0.592 2e-53
>sp|Q9C968|CCA24_ARATH Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1 Back     alignment and function desciption
 Score =  321 bits (822), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 185/365 (50%), Positives = 224/365 (61%), Gaps = 32/365 (8%)

Query: 1   MKKQSSIAANVGDSTG-IMTRSRAATLASQSSGFVASSRAPSVQTRKRVLRENPKKAASD 59
           M K+++++ N     G  +TR+ A+ L + S    +S  A + Q + RVLR   K+ A D
Sbjct: 1   MGKENAVSGNSIPIHGRPVTRALASALRASSKLITSSEVAATTQNQGRVLRAKSKRTALD 60

Query: 60  ENNIIVTDNPCRQHKRRAVLQDVTNVCCENSYRSFFHAAKIQPKNSKQAKNGQAQISKLA 119
           E             K+RAVL+D+TNV CENSY S F  A    +N KQ K G+   S   
Sbjct: 61  EKK-------ANAPKKRAVLKDITNVTCENSYTSCFSVAV---ENIKQIKKGRQSSSSSK 110

Query: 120 PSVSVKVLHVQANSKTRINKGTVKAGHKPVELSTSLGADMTVQLGSINECTRGNQRPSEL 179
            + S     V  ++K  +   +  A    V   TSLG + T         +R   RP   
Sbjct: 111 VASSSATSQV-TDAKVEVVSNSAGASLS-VFTDTSLGTNETSYSIIAKPSSRSPPRPF-- 166

Query: 180 QICTKKVEKDNFSGKLMTSC----YPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRR 235
                        G +  SC     P  VDIDSD  DP LCSLYA DIY NL+VAEL RR
Sbjct: 167 -------------GTVERSCGGASSPKFVDIDSDDKDPLLCSLYAPDIYYNLRVAELKRR 213

Query: 236 PFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRL 295
           PFP+FME  QRD+T+ MRGILVDWLVEVSEEY LVPDTLY+TVYLIDWFL  NY+ERQRL
Sbjct: 214 PFPDFMEKTQRDVTETMRGILVDWLVEVSEEYTLVPDTLYLTVYLIDWFLHGNYVERQRL 273

Query: 296 QLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKT 355
           QLLGITCMLIASKYEEI APR EEFCFITDNTY+R++VL+MESQVLK   FQ++ PT+KT
Sbjct: 274 QLLGITCMLIASKYEEIHAPRIEEFCFITDNTYTRDQVLEMESQVLKHFSFQIYTPTSKT 333

Query: 356 FLRYF 360
           FLR F
Sbjct: 334 FLRRF 338

Arabidopsis thaliana (taxid: 3702)
>sp|Q38819|CCA23_ARATH Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=1 SV=2 Back     alignment and function description
>sp|Q2QQ96|CCA21_ORYSJ Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q39071|CCA21_ARATH Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=3 Back     alignment and function description
>sp|Q147G5|CCA22_ARATH Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q7F830|CCA11_ORYSJ Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0JPA4|CCA12_ORYSJ Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6Y3|CCA11_ARATH Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q0INT0|CCA13_ORYSJ Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=2 SV=2 Back     alignment and function description
>sp|Q0DJR9|CCA14_ORYSJ Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYCA1-4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
224054182 482 predicted protein [Populus trichocarpa] 0.966 0.724 0.580 1e-109
255552983 496 cyclin A, putative [Ricinus communis] gi 0.975 0.709 0.582 1e-106
225442739 490 PREDICTED: cyclin-A2-4 [Vitis vinifera] 0.991 0.730 0.541 1e-104
147840544 872 hypothetical protein VITISV_017610 [Viti 0.991 0.410 0.544 1e-103
224073784 463 predicted protein [Populus trichocarpa] 0.944 0.736 0.570 1e-101
359476069 533 PREDICTED: cyclin-A2-2-like [Vitis vinif 0.977 0.662 0.521 3e-92
356519423 482 PREDICTED: cyclin-A2-4-like [Glycine max 0.952 0.713 0.519 8e-91
449436090 503 PREDICTED: cyclin-A2-4-like [Cucumis sat 0.961 0.689 0.487 1e-86
449520565 503 PREDICTED: LOW QUALITY PROTEIN: cyclin-A 0.961 0.689 0.487 2e-86
356528942 481 PREDICTED: cyclin-A2-4-like [Glycine max 0.966 0.725 0.520 4e-86
>gi|224054182|ref|XP_002298132.1| predicted protein [Populus trichocarpa] gi|222845390|gb|EEE82937.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/372 (58%), Positives = 261/372 (70%), Gaps = 23/372 (6%)

Query: 1   MKKQSSIAANVGDSTGIMTRSRAATLASQSSGFVASSRAPSVQTRKRVLRENPKKAASDE 60
           MKK++++ +N     G +TR+ A     ++SG +   +A S Q +KR+LR NPK+AA DE
Sbjct: 1   MKKENTLPSNFRQLNGPVTRAAAL----RASGKMPPLKASSKQDQKRILRANPKRAALDE 56

Query: 61  NNIIVTDNPCRQHKRRAVLQDVTNVCCENSYRSFFHAAKIQPKNSKQAKNGQAQISKLAP 120
           NN     N   Q KRRAVLQDVTNVCCENSY S F A KIQ   +K AK GQ ++SK+AP
Sbjct: 57  NNTSGPANAGNQRKRRAVLQDVTNVCCENSYTSCFSATKIQ---AKIAKKGQLKVSKIAP 113

Query: 121 SVSVKVLHVQANSKTRINKGTVK-AGHKPVELSTSLGADMTVQLGSI-----------NE 168
           SV+++  H++ANSK +I    VK   +  +  S++   D++ Q   I           N+
Sbjct: 114 SVALEHRHLRANSKKKIICQEVKRVPYSEIVCSSTQEKDVSSQPSGIRGVGIDDPQLPNQ 173

Query: 169 CTRGNQRPSELQICTKKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQ 228
           C+R    P      + K EK N S     S   + +DIDS+H DPQLCSLYAADIYSNL+
Sbjct: 174 CSRVPSHPHN----SPKKEKCNVSENQKISRDQEFIDIDSNHKDPQLCSLYAADIYSNLR 229

Query: 229 VAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQN 288
           VAEL RR  PNFMETVQRDITQ+MRGIL+DWLVEVSEEYKLVPDTLY+TVYLID FL QN
Sbjct: 230 VAELVRRSLPNFMETVQRDITQSMRGILIDWLVEVSEEYKLVPDTLYLTVYLIDRFLSQN 289

Query: 289 YIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQL 348
           YIERQRLQLLGITCMLIASKYEEIC+PR EEFCFITDNTY+  EVL+ME+QVL   GFQ+
Sbjct: 290 YIERQRLQLLGITCMLIASKYEEICSPRVEEFCFITDNTYTSHEVLRMETQVLNFFGFQI 349

Query: 349 FVPTTKTFLRYF 360
           F PT KTFLR F
Sbjct: 350 FAPTAKTFLRRF 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552983|ref|XP_002517534.1| cyclin A, putative [Ricinus communis] gi|223543166|gb|EEF44698.1| cyclin A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225442739|ref|XP_002280592.1| PREDICTED: cyclin-A2-4 [Vitis vinifera] gi|297743331|emb|CBI36198.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147840544|emb|CAN63857.1| hypothetical protein VITISV_017610 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224073784|ref|XP_002304171.1| predicted protein [Populus trichocarpa] gi|222841603|gb|EEE79150.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476069|ref|XP_002281863.2| PREDICTED: cyclin-A2-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356519423|ref|XP_003528372.1| PREDICTED: cyclin-A2-4-like [Glycine max] Back     alignment and taxonomy information
>gi|449436090|ref|XP_004135827.1| PREDICTED: cyclin-A2-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520565|ref|XP_004167304.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-A2-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356528942|ref|XP_003533056.1| PREDICTED: cyclin-A2-4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2034250 461 CYCA2;4 "Cyclin A2;4" [Arabido 0.750 0.587 0.574 2.2e-73
TAIR|locus:2196563 450 CYCA2;3 "CYCLIN A2;3" [Arabido 0.855 0.686 0.501 2.3e-71
TAIR|locus:2148052 436 CYC3B "mitotic-like cyclin 3B 0.434 0.360 0.713 4.8e-62
TAIR|locus:2205871 460 CYCA1;1 "Cyclin A1;1" [Arabido 0.894 0.702 0.390 9.2e-52
TAIR|locus:2031407 442 CYCA1;2 "CYCLIN A1;2" [Arabido 0.434 0.355 0.579 2.6e-47
TAIR|locus:2030648 372 CYCA3;2 "cyclin-dependent prot 0.432 0.419 0.544 1.4e-46
TAIR|locus:2167761 355 CYCA3;1 "Cyclin A3;1" [Arabido 0.432 0.439 0.538 3.5e-43
TAIR|locus:2036756 370 CYCA3;4 "CYCLIN A3;4" [Arabido 0.623 0.608 0.424 1.6e-40
TAIR|locus:2036761 327 CYCA3;3 "Cyclin A3;3" [Arabido 0.432 0.477 0.518 1.8e-39
RGD|1310639 421 Ccna1 "cyclin A1" [Rattus norv 0.379 0.325 0.514 1.9e-35
TAIR|locus:2034250 CYCA2;4 "Cyclin A2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 165/287 (57%), Positives = 193/287 (67%)

Query:    74 KRRAVLQDVTNVCCENSYRSFFHAAKIQPKNSKQAKNGQAQISKLAPSVSVKVLHVQANS 133
             K+RAVL+D+TNV CENSY S F  A    +N KQ K G+ Q S  +   S        ++
Sbjct:    68 KKRAVLKDITNVTCENSYTSCFSVAV---ENIKQIKKGR-QSSSSSKVASSSATSQVTDA 123

Query:   134 KTRINKGTVKAGHKPVELSTSLGADMTVQLGSINECTRGNQRPSELQICTKKVEKDNFSG 193
             K  +   +  A    V   TSLG + T         +R   RP         VE+ +  G
Sbjct:   124 KVEVVSNSAGASLS-VFTDTSLGTNETSYSIIAKPSSRSPPRPFGT------VER-SCGG 175

Query:   194 KLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMR 253
                 +  P  VDIDSD  DP LCSLYA DIY NL+VAEL RRPFP+FME  QRD+T+ MR
Sbjct:   176 ----ASSPKFVDIDSDDKDPLLCSLYAPDIYYNLRVAELKRRPFPDFMEKTQRDVTETMR 231

Query:   254 GILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCMLIASKYEEIC 313
             GILVDWLVEVSEEY LVPDTLY+TVYLIDWFL  NY+ERQRLQLLGITCMLIASKYEEI 
Sbjct:   232 GILVDWLVEVSEEYTLVPDTLYLTVYLIDWFLHGNYVERQRLQLLGITCMLIASKYEEIH 291

Query:   314 APRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360
             APR EEFCFITDNTY+R++VL+MESQVLK   FQ++ PT+KTFLR F
Sbjct:   292 APRIEEFCFITDNTYTRDQVLEMESQVLKHFSFQIYTPTSKTFLRRF 338
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA;IGI;RCA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0008283 "cell proliferation" evidence=IGI
GO:0010374 "stomatal complex development" evidence=IGI
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051510 "regulation of unidimensional cell growth" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
TAIR|locus:2196563 CYCA2;3 "CYCLIN A2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148052 CYC3B "mitotic-like cyclin 3B from Arabidopsis" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205871 CYCA1;1 "Cyclin A1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031407 CYCA1;2 "CYCLIN A1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030648 CYCA3;2 "cyclin-dependent protein kinase 3;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167761 CYCA3;1 "Cyclin A3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036756 CYCA3;4 "CYCLIN A3;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036761 CYCA3;3 "Cyclin A3;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1310639 Ccna1 "cyclin A1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C968CCA24_ARATHNo assigned EC number0.50680.92240.7223yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 5e-56
COG5024 440 COG5024, COG5024, Cyclin [Cell division and chromo 7e-29
cd0004388 cd00043, CYCLIN, Cyclin box fold 4e-20
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 4e-17
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  178 bits (455), Expect = 5e-56
 Identities = 64/127 (50%), Positives = 91/127 (71%), Gaps = 1/127 (0%)

Query: 222 DIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLI 281
           DIY+ L+  E   RP P++++  Q DI   MR IL+DWLVEV EE+KL+P+TLY+ V  +
Sbjct: 1   DIYAYLRELEEEDRPPPDYLD-QQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYL 59

Query: 282 DWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVL 341
           D FL +  + R +LQL+G+TC+LIA+KYEEI  P  E+F +ITDN Y++EE+L+ME  +L
Sbjct: 60  DRFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLIL 119

Query: 342 KCLGFQL 348
             L + L
Sbjct: 120 STLNWDL 126

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
KOG0653 391 consensus Cyclin B and related kinase-activating p 100.0
COG5024 440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0655 408 consensus G1/S-specific cyclin E [Cell cycle contr 99.97
KOG0656 335 consensus G1/S-specific cyclin D [Cell cycle contr 99.96
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.93
KOG0654 359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.92
TIGR00569 305 ccl1 cyclin ccl1. University). 99.59
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.51
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.43
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 99.35
COG5333 297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.12
KOG0835 367 consensus Cyclin L [General function prediction on 98.96
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.71
KOG0794 264 consensus CDK8 kinase-activating protein cyclin C 98.71
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.31
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.2
KOG2496 325 consensus Cdk activating kinase (CAK)/RNA polymera 98.06
KOG1597308 consensus Transcription initiation factor TFIIB [T 96.94
KOG1674218 consensus Cyclin [General function prediction only 96.56
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 96.16
KOG1675343 consensus Predicted cyclin [General function predi 95.45
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 95.16
PRK00423310 tfb transcription initiation factor IIB; Reviewed 91.7
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 91.44
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 88.05
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-34  Score=286.52  Aligned_cols=158  Identities=47%  Similarity=0.786  Sum_probs=148.3

Q ss_pred             CcccCCC-CCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 048703          202 DHVDIDS-DHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYL  280 (361)
Q Consensus       202 ~~~did~-~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l  280 (361)
                      .+.|+|. +..+|+++.+|..+||.+|+..|..+.|. .|+. -|.++++.||.++||||++||..|+|.+|||||||+|
T Consensus       108 ~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p~-~~~~-~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnl  185 (391)
T KOG0653|consen  108 SILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLPL-SYDI-SQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNL  185 (391)
T ss_pred             CccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCch-hhhc-ccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHH
Confidence            6889988 88999999999999999999999755564 4444 3889999999999999999999999999999999999


Q ss_pred             HHHhhhcCccCccCeEEEeeeehh-hhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHh
Q 048703          281 IDWFLCQNYIERQRLQLLGITCML-IASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRY  359 (361)
Q Consensus       281 ~DRfLs~~~v~~~~lqLvgitCL~-IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~  359 (361)
                      +||||++..+.+.++||+|++||| ||+||||+++|.+.+|++++++.||.+||++||+.||.+|+|++..|+|+.||++
T Consensus       186 iDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr  265 (391)
T KOG0653|consen  186 IDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRR  265 (391)
T ss_pred             HHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHH
Confidence            999999988999999999999966 9999999999999999999999999999999999999999999999999999999


Q ss_pred             hC
Q 048703          360 FN  361 (361)
Q Consensus       360 Fs  361 (361)
                      |+
T Consensus       266 ~~  267 (391)
T KOG0653|consen  266 FL  267 (391)
T ss_pred             HH
Confidence            84

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3qhr_B 261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 3e-32
4i3z_B 257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 3e-32
4ii5_B 258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 3e-32
3dog_B 264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 5e-32
3ddq_B 269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-32
3ddp_B 268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-32
3bht_B 262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-32
4bcq_D 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 7e-32
2g9x_B 262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 7e-32
1vin_A 268 Bovine Cyclin A3 Length = 268 7e-32
4bcq_B 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 7e-32
1vyw_B 265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 8e-32
4bco_B 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 8e-32
2x1n_B 261 Truncation And Optimisation Of Peptide Inhibitors O 9e-32
1fin_B 260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 9e-32
3f5x_B 256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 9e-32
1qmz_B 259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 1e-31
1jst_B 258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 1e-31
1e9h_B 261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 1e-31
1ogu_B 260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 1e-31
2b9r_A 269 Crystal Structure Of Human Cyclin B1 Length = 269 3e-30
2jgz_B 260 Crystal Structure Of Phospho-Cdk2 In Complex With C 6e-30
1w98_B 283 The Structural Basis Of Cdk2 Activation By Cyclin E 2e-15
2w9z_A 257 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-13
2w96_A 271 Crystal Structure Of Cdk4 In Complex With A D-Type 3e-13
3g33_B 306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 2e-11
1g3n_C257 Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Com 5e-08
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 3e-07
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 5e-07
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 95/143 (66%), Gaps = 2/143 (1%)
Query: 219 YAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTV 278
           Y  DI++ L+  E+  +P   +M+  Q DIT +MR ILVDWLVEV EEYKL  +TL++ V
Sbjct: 7   YQEDIHTYLREMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 279 YLIDWFLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMES 338
             ID FL    + R +LQL+G   ML+ASK+EEI  P   EF +ITD+TYS+++VL+ME 
Sbjct: 66  NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 125
Query: 339 QVLKCLGFQLFVPTTKTFL-RYF 360
            VLK L F L  PT   FL +YF
Sbjct: 126 LVLKVLAFDLAAPTVNQFLTQYF 148
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex Length = 257 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-78
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 2e-78
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 4e-78
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 3e-77
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 3e-76
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 3e-76
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 4e-75
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-65
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 2e-12
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 4e-07
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-05
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 4e-05
2ivx_A 257 Cyclin-T2; transcription regulation, cell division 5e-04
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
 Score =  242 bits (619), Expect = 1e-78
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 4/177 (2%)

Query: 184 KKVEKDNFSGKLMTSCYPDHVDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMET 243
              +    S +L+  C            DP+L       +  +L   E    P  ++ + 
Sbjct: 6   DDDKSPGGSMELL--CCEGTRHAPRAGPDPRLL--GDQRVLQSLLRLEERYVPRASYFQC 61

Query: 244 VQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQNYIERQRLQLLGITCM 303
           VQR+I   MR +L  W++EV EE +   +   + +  +D +L      + +LQLLG  CM
Sbjct: 62  VQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCM 121

Query: 304 LIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF 360
           L+ASK  E      E+ C  TD+  S  ++   E  VL  L + L       FL + 
Sbjct: 122 LLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFI 178
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.9
2ivx_A 257 Cyclin-T2; transcription regulation, cell division 99.9
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.88
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 99.87
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.86
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 99.82
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.63
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.35
3k7a_M 345 Transcription initiation factor IIB; RNA polymeras 98.91
2pmi_B 293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.54
4bbr_M 345 Transcription initiation factor IIB; RNA polymeras 98.02
1ais_B200 TFB TFIIB, protein (transcription initiation facto 95.95
1c9b_A207 General transcription factor IIB; protein-DNA comp 91.47
2ivx_A257 Cyclin-T2; transcription regulation, cell division 83.38
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 83.06
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
Probab=100.00  E-value=1.4e-37  Score=293.40  Aligned_cols=154  Identities=24%  Similarity=0.460  Sum_probs=140.0

Q ss_pred             ccCCCCCCCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 048703          204 VDIDSDHTDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDW  283 (361)
Q Consensus       204 ~did~~~~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DR  283 (361)
                      .+++.+..||+++++  +||| +|+..|.++.|+++|+...|++|++.||.++||||++++..|++.++|+|+||+||||
T Consensus         5 ~~~~~~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DR   81 (257)
T 1g3n_C            5 NNPPSGLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR   81 (257)
T ss_dssp             -----------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCCccCCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            346678899999987  9999 9999999999999999767999999999999999999999999999999999999999


Q ss_pred             hhhcCccCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceecCCCHHHHHHhh
Q 048703          284 FLCQNYIERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLFVPTTKTFLRYF  360 (361)
Q Consensus       284 fLs~~~v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~~pTp~~FL~~F  360 (361)
                      |++...+.+.++||+|+||||||||+||..+|.+++|++++++.|+.++|++||+.||++|+|+++.|||++||++|
T Consensus        82 fls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~  158 (257)
T 1g3n_C           82 LLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFL  158 (257)
T ss_dssp             HTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred             HHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-48
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 8e-48
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 5e-47
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-45
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 2e-42
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 4e-30
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 2e-25
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 6e-23
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (400), Expect = 2e-48
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 212 DPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVP 271
            P L      +++  +   E       +F+E     +   MR IL+DWL+EV E YKL  
Sbjct: 3   LPVLSWANREEVWKIMLNKEKTYLRDQHFLE-QHPLLQPKMRAILLDWLMEVCEVYKLHR 61

Query: 272 DTLYMTVYLIDWFLCQNY-IERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSR 330
           +T Y+     D ++     + +  LQL+GI+ + IA+K EEI  P+  +F ++TD   S 
Sbjct: 62  ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 121

Query: 331 EEVLKMESQVLKCLGFQL 348
           +E+L ME  ++K L ++L
Sbjct: 122 DEILTMELMIMKALKWRL 139
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.98
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.96
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.77
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.52
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.39
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 96.92
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 95.98
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.27
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 90.41
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=254.68  Aligned_cols=138  Identities=32%  Similarity=0.557  Sum_probs=132.4

Q ss_pred             CCcchhhccHHHHHHHHHHHHhccCCCCCccccccccCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcC-c
Q 048703          211 TDPQLCSLYAADIYSNLQVAELNRRPFPNFMETVQRDITQAMRGILVDWLVEVSEEYKLVPDTLYMTVYLIDWFLCQN-Y  289 (361)
Q Consensus       211 ~dp~~~~eY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~lIdwL~~v~~~~~L~~eTl~lAV~l~DRfLs~~-~  289 (361)
                      .+|+++..|++|||.+|+++|.++.++++|+.. |++|++.||..+||||++++..|+++.+|+|+||+||||||+.. .
T Consensus         2 ~~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~-q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~   80 (140)
T d1w98b2           2 PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN   80 (140)
T ss_dssp             CSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCccccccCHHHHHHHHHHHHHhhCCChHHHhC-CCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccc
Confidence            478999999999999999999999999999986 89999999999999999999999999999999999999999865 5


Q ss_pred             cCccCeEEEeeeehhhhhhhhccCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCceec
Q 048703          290 IERQRLQLLGITCMLIASKYEEICAPRAEEFCFITDNTYSREEVLKMESQVLKCLGFQLF  349 (361)
Q Consensus       290 v~~~~lqLvgitCL~IASK~EE~~~p~l~~l~~i~~~~yt~~eI~~mE~~IL~~L~w~L~  349 (361)
                      +.++++||+|+||||||+|+||..+|.+.+|+.++++.|+.++|++||+.||++|+|+|+
T Consensus        81 v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          81 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             ccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            889999999999999999999999999999999999999999999999999999999985
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure